Monthly Archives: January 2011

ScienceOnline2010 – interview with Steve Koch

Continuing with the tradition from last two years, I occasionally post interviews with some of the participants of the ScienceOnline2010 conference that was held in the Research Triangle Park, NC back in January 2010. See all the interviews in this series here. You can check out previous years’ interviews as well: 2008 and 2009.

Today, I asked Steve Koch to answer a few questions.

Welcome to A Blog Around The Clock. Would you, please, tell my readers a little bit more about yourself? Where are you coming from (both geographically and philosophically)? What is your (scientific) background?

I was raised in Ann Arbor, Michigan, USA, a town that embraces the University of Michigan’s Athletic and Academic programs (in that order probably!). I remain a huge fan of Michigan and, sadly, Detroit professional sports teams. My mom and dad adopted me when I was about two months old and raised my sister and me in this house. My parents were very encouraging of my love of science. I remember many trips with my mom to the bookmobile to get the science books that the driver had found for me in the library. It boggles my mind to think of what I could have learned if I had the internet and Wikipedia around when I was young! My dad was an audiologist and helped me with all my science fair projects and taught me to be a good experimentalist. One project I remember the best was when he brought home an audiometer and I tested the noise reduction capabilities of various ear plugs. He helped me with the title too and “Stick it in your ear!” won my 9th grade science fair. Yes, I am bragging about that.

Mr. Mastie was our earth science teacher in junior high school, but more importantly, he was our leader for Science Olympiad. He had a spectacular amount of energy and enthusiasm for science and launched science careers for quite a few of us, I’d expect. Richard Taylor, my physics teacher in 12th grade was another outstanding teacher that played a huge part in my career.

After high school graduation, I asked my friend Liz if she could ask her dad, Francis Collins, if I could work in his lab that summer. He said yes! So, my first research job at Michigan (where I did my undergraduate degree in physics) was in a genetics lab. I LOVED it and wrote a bit about it in a blog post, Assistant to Robot, Promoted to Robot. I worked in a lab every semester I was at Michigan, working for professors doing genetics (Collins), granular systems (Nori), atomic physics (Bucksbaum), and high energy physics. I also did an internship in non-destructive evaluation with Bill Ellingson at Argonne National Lab – probably the first time I saw my research in a lab produce results that people outside the lab were actually excited about.

Tell us a little more about your career trajectory so far: interesting projects past and present?

After my undergraduate work, I went to the Cornell physics Ph.D. program. Why did I choose Cornell? At the time, Bose-Einstein condensation had recently been achieved. I was accepted at MIT and dying to work in atomic physics with the Ketterle and Pritchard labs. However, my best friend had already decided to go to Cornell for MechE Ph.D. At the time, it was a tough decision, but I finally decided that I was sure it would be fun to be at the same school as my friend, whereas it was less certain that I’d thrive in atomic physics or MIT in general. In retrospect, it’s clear I made the right decision. Nowadays, when I talk with undergraduates who are choosing graduate schools, I make it a point to discuss factors besides the science: distance from family or boyfriends/girlfriends, climate, etc. Cornell did not have any atomic physics, which I was in love with at the time. Even so, it still took me two years to realize that biology is the science I love the most. It’s so obvious in retrospect. But back then, I spent half a year in low temperature physics with Jeevak Parpia. The science and the experiments were very cool. And Jeevak was a terrific advisor. But I eventually realized that biophysics was where I belonged, so I switched to a single-molecule / optical tweezers lab.

What is taking up the most of your time and passion these days? What are your goals?

I have a wonderful five-year-old son and a wonderful three-year-old daughter. One of my goals is to succeed at being a scientist to serve as an example for my kids. Without a doubt, for me it’s a huge challenge to switch mental gears between being a scientist and being a dad. And I can only imagine how much tougher this is for scientist moms. I need to get better at it. Last spring, I coached tee ball, which was surprisingly rewarding (and time-consuming). Before starting, I assumed I just wanted to have fun watching my own son play ball. But it turns out that I really enjoyed it when any of the children learned a new skill. And they were like sponges and got better every game, so it was a ton of fun and I will do it again next spring. If you’re going to click on one link in this interview, check out the photo of my son in the Wikipedia tee ball article. Looks like a great catcher!

The rest of my time is taken up by teaching and managing our research lab and talking science with the students in our lab. I have non-talents that impede my grant writing and paper writing. Definitely I am not passionate about those tasks. I love thinking up experiments, looking at data, thinking of data analysis algorithms, coding, and seeing unexpected and / or new results. So, I still have a strong passion for being an experimentalist. And the lab has really taken off since getting our first big grant a year and a half ago. We are having a lot of fun in the lab, but it also takes more and more time the better the students get at generating and analyzing the data…so it’s a bit crazy, and one of my goals is to survive. 🙂 What are my specific goals? For my lab, I want my students to learn a lot about their talents during their time in the lab. And I want them to succeed after leaving the lab and I want to get vicarious happiness from that. For my family, I want to show my kids that you can succeed while having fun. I will be happy whatever my kids do as long as they strive for excellence.

What’s the worst thing about being a professor?

I don’t like how many jobs I have that I am not good at and how often I have to switch from one task to another. In graduate school, after completing my required courses, I loved being able to focus on a single task for 20 hours straight, and then come right back to it the next day. Especially if it were a computer programming / data analysis problem. Well, those days are gone and now I have to constantly switch from teaching to advising to grant writing to committee work to paper writing to friendfeed to… Yes, I know that’s reality for most of us, I’m just sayin’ I don’t like it. I also don’t like the pressure of having graduate students depend on me obtaining research grants for their livelihood. Not the kind of stress I thrive on.

What’s the best thing about being a professor?

By far it’s being able to interact with students – both in teaching and in the research lab. I’ve been here about four years, and have interacted with hundreds of students. I’d say I know close to a dozen very well and dozens remain in touch. I have one strong talent necessary for teaching / managing students, and that is that I get true enjoyment out of seeing students succeed, both now and later in their careers. I think that’s an essential talent for this career, which I fortunately have. Of course, I get to know the students best when they’re in our research lab. I have been so lucky to have many outstanding students contribute to our lab’s success. We’ve had some students in our lab who are now or soon will be in graduate school elsewhere—Diego Ramallo Pardo (Stanford), Caleb Morse, Pat Jurney (UT Austin), Nas Manole (UNM Med.), Linh Le (UNM), Brandon Beck. Currently we have four graduate students—Andy Maloney, Pranav Rathi, Anthony Salvagno, and Nadia Fernandez-Oropeza—and one undergraduate—Brian Josey. All of these students are carrying out Open Notebook Science, inspired by Jean-Claude Bradley and many others. And, big news: We just graduated our first Ph.D. student, Larry Herskowitz! And he even got a job already!!! The students are what I love the most, and I am continually regretting that I don’t spend enough time with them. Maybe 2011 will be the year I can fix that??? We’ll see…

How does (if it does) blogging figure in your work? How about social networks, e.g., Twitter, FriendFeed and Facebook? Do you find all this online activity to be a net positive (or even a necessity) in what you do?

I think social networking is now a necessity for me and my students. I enjoy blogging but have not been able to keep it up consistently. For the past couple years, FriendFeed has been a wonderful resource—so many clever, dedicated, and supportive people to interact with.

What was the best aspect of ScienceOnline2010 for you?

By far the best part of ScienceOnline2010 was getting to meet in-person many of the people whom I’d only previously known electronically. I had great conversations over lunch, dinner, and at the bar. By the time the conference was over, I had serious insomnia from so many inspiring ideas. At the time I blogged a little about them, along with some resolutions. It’s been over half a year now, and I’m happy to see that I’ve made progress on the resolutions, even if very slowly. I talk with the students in the lab frequently about how we can continue to make our lab notebooks better and easier to manage, and we’re making some progress. I’ve started a collaboration with a new library scientist at UNM, Rob Olendorf. So, hopefully within a year we’ll have figured out a lot about how our library can host our open data. Research in the lab is going really well and we’ve recently submitted two papers to PLoS ONE.

It was so nice to meet you in person and thank you for the interview. I will see you again very soon!

ScienceOnline2011 – introducing the participants

Continuing with the introductions to the attendees/participants of ScienceOnline2011. You can find them all on the list, but it may help if you get them in smaller chunks, focusing on a few at a time.

Peter Janiszewski is an exercise physiologist, writer and editor. He is a co-creator of Science of Blogging and he blogs at Obesity Panacea and tweets as @pmjaniszewski.

Gabrielle Lyon is the Cofounder and Executive Director of Project Exploration where she runs the blog and the @ProjExplore twitter account. I interviewed Gabe two years ago.

Thomas Peterson is the Chief Scientist at the National Oceanic and Atmospheric Administration (NOAA) National Climatic Data Center.

Mark MacAllister is the Coordinator of Online Learning Projects at the North Carolina Zoological Society. He founded and runs the Field Trip Earth educational resource and tweets as @fieldtripearth. I interviewed Mark back in March.

Cristine Russell is a Freelance writer for outlets like Columbia Journalism Review. She tweets as @russellcris.

Andrea Kuszewski is a Researcher at Metodo, a Behavior Therapist, and an artist. She blogs at Rogue Neuron and tweets as @AndreaKuszewski.

Tabitha Powledge is a freelance science & medical writer-editor as well as a member of the Executive Board of the National Association of Science Writers (NASW) where she runs the homepage news blog. She tweets as @tamfecit.

Paul Groth is a Postdoc at VU University Amsterdam. He blogs at Think Links and tweets as @pgroth.

Kathleen Raven is a graduate student and freelance writer in the Knight Health Medical Journalism program at Grady College of Journalism and Mass Communication at the University of Georgia. She blogs at Paragraphs and tweets as @ravenkathleen.

Ann Allen is the Science Editor at The Charlotte Observer.

New post on the SciAm Guest Blog – history of the science of glaciers

Another year, another post on the Scientific American Guest Blog.

Today, David Bressan traces the history of our understanding of what glaciers are and how they form in The discovery of the ruins of ice: The birth of Glacier research. Enjoy, comment, share.

Can WordPress do this?

Is there a plugin in WordPress that can do this – a tabbed blog:

How would that work?

Example #1

I could pick a few Top Categories on my blog, e.g., Science, Media, Education, Politics and Other and assign each to one of the tabs. Thus, every time I post, I would have to use one or more Top Categories as well as second-level categories if and as many as I want to add. This way a reader can check out only my content of interest (e.g., Science) and not waste time on content of lesser interest (e.g., Politics). The reader would also be able to subscribe to only the feed for one of the tabs/categories and ignore the rest. I would also be able to, for example, import only the feeds of select Tabs into other services (e.g., facebook, friendfeed, twitter).

Example #2

A conference has multiple ‘tracks’ or rooms. Each of these has its own tab for (live)blogging. The official conference bloggers would log in to a particular account or be instructed to use a particular Top Category in order to have their posts appear under the correct tab.

Example #3

A group blog in which each co-blogger has his or her own tab (or even an entire multi-blog network which just appears on surface to be a single multi-author blog). Each person would either have a separate login/password which would automatically place their posts under the correct tab, or each person would have his/her own Top Category.

Settings

Depending on the needs and uses, the placement and order of tabs should be easy to manage by the bloggers. Possible options for such settings are:

– set up manually the order of tabs which always appears the same way to the readers. For example, I could place my Science tab to be the first one, Media as second, etc., thus providing Science as the top layer of the blog at all times.

– set it to “Random” so each time each reader comes to the site, the order of tabs (and thus which one is visible as the top layer) is different.

– set it in a way that Users can pick their own Default order of tabs. That may be good for official conference blogs as users may want to pick a “track” to follow. Or I can set it that way so my readers can choose which of my categories to see up on top each time they visit.

– set it for regular rotation, e.g., be able to tell WordPress to rotate all the tabs in a particular way (e.g., move them all one position to the left, moving the first tab back to become the last one, or the other way round, or random, etc.) at a particular time interval (e.g., every X days). This may be good for group blogs or networks or news-sites in which all co-bloggers/authors/topics post with the same frequency.

– have the order of tabs determined by the recency of posts in each tab, so the tab with the most recent post is the first (“left”, “top”), etc. This would be useful for multi-author blogs or blog networks where authors greatly vary in their frequency of posting – the rare new post by the infrequent blogger will be appearing up front for a while for readers who may not often check out that blogger.

– Ideally, one could do a hybrid of the above, e.g., a preset default for the top layer (Tab #1, e.g., the news homepage), while the order of the other tabs (individual topics or authors) would be ordered either randomly, or by timed schedules, or by the recency of the last posting.

Needless to say, it would be very easy to add, delete or rename tabs, and there would be either no limit or a very high limit (12? 20? stacked up in rows of 4-5?) to the number of tabs one can have.

What would a reader see?

All the reader would need to do is remember or bookmark a single URL. Clicking on tabs would expand the experience to a broader – and more organized – range of content.

In most cases, clicking on a tab would only change the content of the column in the middle. This makes sense for an individual blog with multiple categories, or a news-site, or a conference blog.

But in cases of some big multi-author blogs or multi-blog networks, clicking on the tab can possibly change much more – banner, URL, sidebars, About page (and other pages), background, font, etc. There would be a possibility to customize quite a lot, leaving only some agreed elements common to all the tabs.

So, does such a plugin exist? If not, would it be easy to make? Any takers taking a shot at it?

Quick Links

Just a few more, if you already finished all the yesterday’s ones:
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Gallery

2010 in review – blog stats

This is something that WordPress sends to all people who use their blogging platform, or so it seems. Interesting to see – my BIO101 posts are getting a lot of traffic from searches, as always. Funny to see “3 views” … Continue reading

Quick Links

Happy New Year!!!!

And while you are recovering from the holidays, and before you have to go back to work, here are a few good reads:
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Best of December

I posted 67 times in December. I reviewed the entire year yesterday, but here is just the last month.

This is usually a busy time for me. There is ScienceOnline2011 to organize, Open Laboratory to edit, Scienceblogging.org to upgrade, and SciAm blogging network to build. Oh, and holidays and family!

That does not leave too much time for writing original pieces. But I did write one in December – and it’s a big one: The line between science and journalism is getting blurry….again, my first article at Scientific American, also cross-posted at Science Progress.

I was interviewed by a Staten Island Academy student for their Extreme Biology blog – read the interview here.

The latest two in the series of interviews with the participants of ScienceOnline2010 came in December – with Kelly Rae Chi and Princess Ojiaku.

The big event of the month in science was the brouhaha over arsenic in bacteria – so I collected a linkfest of the key articles and blog posts on the topic.

We closed submissions for Open Laboratory 2010 on December 1st, you can see all the entries here.

I went to NYC again and lived to tell about it.

While I may not have written much myself, I certainly made sure that the SciAm Guest Blog kept busy all month. Here are the December posts there – check them all out:

Excuse me, Sir. There’s a moss-animal in my Lake By Jennifer Frazer
Texas “Tea” becomes the Texas “E”? By Melissa C. Lott
Breaking our link to the “March of Progress” By Brian Switek
How to stop a hurricane (good luck, by the way) By Casey Rentz
Carnivore crossing: How predator species dominated mammal diversity on the Kuril Islands By Anne-Marie Hodge
Waste to Energy: A mountain of trash, or a pile of energy? By Melissa C. Lott and David M. Wogan
The worms within By Robin Ann Smith
5 things you never knew about penguins! By Daniel Ksepka
Scientific accuracy in art By Glendon Mellow
Pimp My Virus: Ocean Edition By Jennifer Frazer
I don’t have a 28-day menstrual cycle, and neither should you By Kathryn Clancy
How to name a dinosaur By David Orr
Mixed cultures: art, science, and cheese By Christina Agapakis
Habitable and not-so-habitable exoplanets: How the latter can tell us more about our origins than the former By Kelly Oakes.