Yearly Archives: 2007

Today’s Carnivals

Grand Rounds 3.52 are up on Six Until Me.
Carnival of the Green #95 is up on Green Style Mag.
The latest Carnival of the Godless is up on Ain’t Christian.

I heard that badmouthing Microsoft is good for traffic…

The program of the Microsoft/RENCI conference is now up. They would not let me give a talk, but I’ll have to make a poster (using the darned MS Power Point, I guess #$%^&*) which makes me pretty mad. Heck, there is some unknown talking about science blogs instead of me. Who made this decision?
Compared to the organizers of every other meeting this year, from SciFoo, to ConvergeSouth, to ASIS&T, to the panel at Harvard (and yes, our own Science Blogging Conference), these guys are positively Palaeolitic in their attitude – from the haughtily-official looking site, to the very idea of submitting ‘abstracts’ (not to mention that this is done via a cumbersome submission form), it appears they barely scratched Web 1.0, yet they want to discuss Web 2.0.
Perhaps I should withdraw my poster and just go and schmooze with the likes of Timo Hannay and Jean Claude-Bradley instead, and try to actually teach some people there about Science 2.0 in the hallways.
Or perhaps I am just in a really bad mood today….and should be back to my usual sunny self by tomorrow.

The State of Life Sciences

The State of Life Sciences in North Carolina, that is.

ClockQuotes

Men talk of killing time, while time quietly kills them.
– Dion Boucicalt

My Picks From ScienceDaily

Cyprian Honeybees Kill Their Enemy By Smothering Them:

For the first time, researchers have discovered that when Cyprian honeybees mob and kill their arch enemy, the Oriental hornet, the cause of death is asphyxiation. They reported their findings in Current Biology.

More
Cell Death In Sparrow Brains May Provide Clues In Age-related Human Diseases:

A remarkable change takes place in the brains of tiny songbirds every year, and some day the mechanism controlling that change may help researchers develop treatments for age-related degenerative diseases of the brain such as Parkinson’s and dementia.

Which is very interesting to people who don’t care at all about human medicine, but one gotta sell the study to the media somehow…
New Light Shed On Hybrid Animals:

What began more than 50 years ago as a way to improve fishing bait in California has led a University of Tennessee researcher to a significant finding about how animal species interact and that raises important questions about conservation. In the middle of the 20th century, local fishermen who relied on baby salamanders as bait introduced a new species of salamander to California water bodies. These Barred Tiger salamanders came into contact with the native California Tiger salamanders, and over time the two species began to mate.

How Some Algae Tolerate Very Salty Environments:

Researchers have identified unique proteins that allow a unicellular alga called Dunaliella salina to proliferate in environments with extreme salt content. These results might provide ways to help crop plants resist the progressive accumulation of salt in soil, which is a major limitation for agricultural productivity worldwide.

Thank you!

Dr.Tatiana.jpgA dear reader checked out my amazon wish-list and sent me Dr.Tatiana’s Sex Advice to All Creation, a book I wanted for a long time. Thank you!

Textbooks

There have been a couple of recent posts about textbooks lately. Jim Fiore started it all with a look at the textbook business from the perspective of the authors and students, looking primarily at the problem of money. One sentence really hit me, though:

The problem with a large, institutionalized used book market is that it completely cuts out the publisher and the author.

In a larger economy, it is called ‘stock market’. When you buy stocks, most often you will be buying them from a broker, not directly from the company. In other words, you are entering the used-stocks market. You are investing, but not into the company. Yet, the worth of a company is measured by the way its stocks are doing on this second-hand stock market. Only about 6% of the stocks in any given year are sold by the businesses themselves, i.e., the money invested in those stocks go back to the company which can then use it for R&D or for PR or for salaries, etc. Many old, well-established companies have not sold any new stocks in decades. This is as if the performance of, for instance, Ford is measured not in the sales of new cars, but in the re-sale value of the second-hand cars. Ford does not get a penny out of any of those transactions, can do very little to influence that market, yet it is required to do whatever it takes to increase the worth of its stock despite of no money coming in. The stockowners demand it, without ever giving back anything to the company. So, the CEOs slash and cut left and right, trying to get growth without having anything coming back in with which to water the plant. This is much better explained in this book (written by a small business owner and no enemy of capitalism) by Marjorie Kelly.
But, back to the textbooks. PZ Myers looks at the business from the perspective of a teacher:

It makes it difficult for students to sell off their used textbooks, it gives faculty the headache of having to constantly update their assignments, and if you allow your students to use older editions, it means we have to maintain multiple assignments. It’s extraordinarily annoying, and to no good purpose at the university (to great purpose at the publisher, though).

Jim responds:

In the arena of science and engineering there are issues with the fairly narrow audience and resultant low volume, and some difficulties with the used book market. There is, of course, the issue of the publishers. I am going to risk having my snout slapped by biting the hand that feeds me, but hey, I noticed something the other day that has my head spinning anyway.

But David Warlick goes further. If you decide to abandon or downgrade the textbooks for your classes, and start using the Web instead, you cannot just let the students go on a wild hunt. They will come up with stuff of questionable quality. With a textbook, it’s easy – it is a text that is approved by you as a teacher and by your colleagues who wrote it, edited it, and promoted it to institutions and school districts. Students know that the textbook is to be trusted, thus they do not need to learn the skills of critically evaluating it. But if they have to find their own sources, they need to learn how to separate the wheat from the chaff:

We teach from textbooks, from reference books, from journals, online databases, and from our own educated expertise. It’s part of our arsenal, as teachers, to help us instill confidence in the sources of that which we are teaching. I’m not saying that textbooks, reference books, and commercial databases are bad, and that we shouldn’t use them. They are enormously valuable. But we’re missing something that’s very important when we rely so exclusively on carefully packaged content and then lament that our students and children rely so readily on Google.
We have to practice what we preach, and we have to practice it out loud!
At the same time that we continue to use our textbooks (or what ever they evolve into), reference works, databases, and our own expertise, we should also bring in, at every opportunity, content and resources that we have found, evaluated, processed, and prepared for teaching and learning, and that we should include conversations about how we found it, evaluated, and processed it. If the are seeing us, every day, asking the questions that are core to being literate today, then perhaps they will not only develop the skills of critical evaluation, but also the habits.

The discussion in the comments is quite contentious there, actually. What do you think?

Scienceblogs taking over Europe!

Seed Media Group, publisher of the Seed Magazine and the Seed Scienceblogs (the site you are on right now), made an announcement last week (PDF) about its new international partnership with Hubert Burda Media conglomerate:

The partnership will initially lead to the European development of ScienceBlogs, the largest online science community (www.scienceblogs.com). Since its launch in January 2006 by Seed Media Group, ScienceBlogs has grown to include 65 blogs across all areas of science, and attracted more than 1.7 million visits in August (Google Analytics), its twentieth straight month of growth. ScienceBlogs has seen its traffic grow by more than 500 percent since launch, with 30 percent now coming from outside the United States.
“We are excited to be entering the European market with Hubert Burda Media, a company that shares our values and that we consider to be among the most visionary and forward-thinking in the media industry,” said Adam Bly, founder and CEO of Seed Media Group. “Today marks an important first step in Seed Media Group’s international expansion.”
“We see this partnership as a chance to help grow a global digital community of high social relevance. We share Seed Media Group’s belief that ‘Science is Culture’ and are delighted to now be associated with an organization at the forefront of this cultural shift,” said Dr. Marcel Reichart, Managing Director, R&D, Marketing & Communications, Hubert Burda Media.

This is great news! First – don’t worry: nobody is getting fired or “downsized” and you will not see any obvious changes here any time soon. But there will be great changes in the future, i.e., more European blogs (perhaps even in languages other than English at some point in the future) and even more European readers. Stay tuned.

Bloggers for Peer Review icon finals

Dave alerts us that the number of entries has ben winnowed to the top three finalists. Check them out and suggest modifications at the BPR3 blog. And vote:

Science Blogging Survey

There is a new online survey up, designed by some of my SciBlings, about the background and online habits of science bloggers and science blog readers (not just scienceblogs.com, but all science blogs). Please take a minute to respond:

This survey attempts to access the opinions of bloggers, blog-readers, and non-blog folk in regards to the impact of blogs on the outside world. The authors of the survey are completing an academic manuscript on the impact of science blogging and this survey will provide invaluable data to answer the following questions:
Who reads or writes blogs?
What are the perceptions of blogging, and what are the views of those who read blogs?
How do academics and others perceive science blogging?
What, if any, influence does science blogging have on science in general?
Please consider participating in the survey as an act of ‘internet solidarity’! It will likely take 10 minutes, and a bit more if you are a blogger yourself. We thank you in advance.

Just click here and answer a few questions, please – it is for a good cause, but you’ll have to wait a little until everything is revealed.

Deep Sea News on TV!

My SciBling Craig McClain is one of the people considered by a major cable channel to host a show about the deep sea. You can help him get this cool job by showing your support in the comments on this post. Please do.

ClockQuotes

It is a commonplace observation that work expands so as to fill the time available for its completion.
– C. Northcote Parkinson, Parkinson’s Law, 1958

My Picks From ScienceDaily

Mathematics Might Save You A Trip To The ER:

Since the days of Hippocrates, people have known that certain illnesses come and go with the seasons. More recently, researchers have learned that these cyclic recurrences of disease, known as seasonality, are often related to the weather. In order to accurately predict when outbreaks of disease will occur, and how many people will be effected, Elena Naumova, PhD, associate professor in the Department of Public Heath and Family Medicine at Tufts University School of Medicine in Boston, and colleagues, are studying seasonality by creating mathematical models based on environmental factors like outdoor temperature.

Shape Encoding May Start In The Retina:

New evidence from the University of Southern California suggests that there may be dedicated cells in the retina that help compile small bits of information in order to recognize objects. The research was conducted by Ernest Greene, professor of psychology in the area of brain and cognitive sciences at USC. It is well established that the images the observer sees are divided in half as they are sent to the two hemispheres of the brain. When a person looks at the center of an object, the image from the right half of the object will be sent to one hemisphere of the brain and the image of the left half is sent to the other. This is true whether a person uses one eye or two to look at the object. “Given that the primary visual areas in each hemisphere are seeing only half of the object, it has been assumed that communication between the hemispheres was needed to combine the information,” said Greene.

What Makes One Wasp Queen? Old Developmental Pathways Spawn Revolutionary Evolutionary Changes:

When the larvae of the primitive social insect Polistes metricus, a paper wasp, slips into the quiet pupal stage, she doesn’t know if she’ll arise a worker or gyne (future queen) — unless she consults with Arizona State University’s social insect researcher Gro Amdam. Amdam’s group is shedding new light on the development of colonial insects from solitary ancestors through study of a primitive social order of wasps. In a paper highlighted on the cover and published Aug. 28 in the Proceedings of the National Academy of Sciences (PNAS), ASU’s Amdam and Florian Wolschin teamed up with Kari Norberg, from Amdam’s laboratory at the Norwegian University of Life Sciences, and James Hunt and others from the University of Missouri. They reveal that the Polistes larvae that can become future queens show signs of developmental diapause, a period of overt quiescence and a life history trait of many insect orders.

New on….

Too busy with the pseudo-moving right now, so just a quick set of links to other people’s good stuff:
An amazing, fantastic post on Laelaps about horse evolution (also noted by Larry Moran). While at first glance, this post on Pondering Pikaia on naturally occurring hybrids in fish is not related, I beg to differ – she does mention other instances of hybridism in nature, including those in Equids – the well-known mules and hinnies, and not so well-known zebroids and others. And I just finished reading a book Hemi: A Mule, which, IMHO, compares quite favorably to Black Beauty – after all, it was written in early 1970s USA (instead of in Victorian England) and is quite blunt on a number of topics, including sex and war. And the overall message is much more pleasing to me…but you’ll have to read it yourself.
Kate looks at a new study in Animal Behavior about the trade-offs between social/affiliative behaviors (e.g., embracing, grooming) and access to infants in New vs. Old World monkeys.
Archy looks at a new technique developed to read the old books and manuscripts without the need to open them.
There is an ongoing series of posts about the science museums and how much they have gone downhill in recent years, starting with Doctor Vector who is angry (and there is a great comment section there to read). Brian Switek responds.
The ethnobiology of voodoo zombification on Neurophilosophy.
RPM caught some wheel bugs in flagrante delicto…
T. Ryan Gregory, Larry Moran, Anne-Marie and PZ Myers discuss the so-called C-Value and why it has been thrown onto the trash-heap of history a long time ago.
Quixote on trained rats (sniffing explosives and such stuff).
Action!
Bring back the Office of Technology Assessment!
Blog Action Day 2007 focuses on the environment this year.
Restore habeas corpus.
Help make NIH-funded research findings freely available to everyone.
Stop the Centers for Medicare and Medicaid Services (CMS) from cutting reimbursements for two radioimmunotherapy drugs to less than their cost.

ClockQuotes

God Himself chasteneth not with a rod but with time.
– Baltasar Gracian, 1601 – 1656

My Picks From ScienceDaily

Who Went There? Matching Fossil Tracks With Their Makers:

Fossilized footprints are relatively common, but figuring out exactly which ancient creature made particular tracks has been a mystery that has long stumped paleontologists. In the latest issue of the Journal of Vertebrate Paleontology, a team of researchers overcome this dilemma for the first time, and link a fossil trackway to a well-known fossil animal.

Bird Completes Epic Flight Across The Pacific:

A female bar-tailed godwit, a large, streamlined shorebird, has touched down in New Zealand following an epic, 18,000-mile-long (29,000 km) series of flights tracked by satellite, including the longest non-stop flight recorded for a land bird.

Primate Behavior Explained By Computer ‘Agents’:

The complex behaviour of primates can be understood using artificially-intelligent computer ‘agents’ that mimic their actions, shows new research published in a special edition of Philosophical Transactions of the Royal Society B and presented at the BA Festival of Science in York.

Human C-reactive Protein Regulates Myeloma Tumor Cell Growth And Survival:

Scientists report that a protein best known as a common marker of inflammation plays a key role in the progression of human cancer. The research, published in the journal Cancer Cell, implicates C-reactive protein (CRP) as a potential target for cancer treatment.

Mother’s Milk A Gift That Keeps On Giving:

Extensive medical research shows that mothers’ milk satisfies babies’ nutritional needs far better than any manufactured infant formula. It also protects babies against many common infectious diseases and certain inflammatory diseases, and probably helps lower the risk of a child later developing diabetes, lymphoma and some types of leukemia.

K-12 Open Minds Conference

It will be on October 9-11, 2007 in Indianapolis:

The Open Minds Conference is the first national K-12 gathering for teachers, technicians and educational leaders to share and explore the benefits of open source in education. Virtual Learning Environments that provide 24X7 access to teaching and learning resources, cutting-edge and easy-to-use desktop applications, coupled with powerful management tools and low-cost computer strategies make the classroom of tomorrow available today!

(Via via)

Today’s Carnivals

Oekologie #9 is up on Fish Feet
Boneyard #5 is up on The Ethical Palaeontologist

15

Mrs. Coturnix and I (amidst all of the packing and cleaning), are also celebrating our anniversary today. I just put some champaign to chill and, just in time for this, the mailman brought us something to drink out of:

Continue reading

My Picks From ScienceDaily

Extra Gene Copies Were Enough To Make Early Humans’ Mouths Water:

To think that world domination could have begun in the cheeks. That’s one interpretation of a discovery, published online September 9 in Nature Genetics, which indicates that humans carry extra copies of the salivary amylase gene. Humans have many more copies of this gene than any of their ape relatives, the study found, and they use the copies to flood their mouths with amylase, an enzyme that digests starch. The finding bolsters the idea that starch was a crucial addition to the diet of early humans, and that natural selection favored individuals who could make more starch-digesting protein.

Very Young Children Can Step Into The Minds Of Storybook Characters:

A large part of enjoying a good book is getting immersed in the life of a character, especially a character’s thoughts and feelings. A new University of Waterloo psychology study shows that preschoolers can already perform this impressive perspective-taking feat and get into the minds of story characters.

Manic Phase Of Bipolar Disorder Benefits From Breast Cancer Medication:

The medication tamoxifen, best known as a treatment for breast cancer, dramatically reduces symptoms of the manic phase of bipolar disorder more quickly than many standard medications for the mental illness, a new study shows. Researchers at the National Institutes of Health’s National Institute of Mental Health (NIMH) who conducted the study also explained how: Tamoxifen blocks an enzyme called protein kinase C (PKC) that regulates activities in brain cells. The enzyme is thought to be over-active during the manic phase of bipolar disorder.

Is Social Networking Changing The Face Of Friendship?:

Online social networks tend to be far larger than their real-life counterparts, but online users say they have about the same number of close friends as the real-life average person. The advent of online social networking sites like Myspace and Facebook is changing the average number of friends people have, with some users befriending literally thousands of others, Dr Will Reader of Sheffield Hallam University told the BA Festival of Science on September 10. Past research by Professor Robin Dunbar at the Evolutionary Psychology and Behavioural Ecology Research Group at Liverpool University has shown that the average person has a social network of around 150 friends, ranging from very close friends to casual acquaintances.

Condoms Are Not ‘One Size Fits All’:

The following article considers condoms that don’t fit well, a brief and effective treatment for sexual problems that occur after treatment for gynecological cancers, and how to set health and fitness goals that really work.

Ethical Issues Of Scientific Research In Developing World Examined:

The first comprehensive examination of the ethical, social and cultural (ESC) challenges faced by major science programs in developing countries has identified a complex assortment of issues with the potential to slow critical global health research if left unaddressed.

ClockQuotes

Time deals gently only with those who take it gently.
– Anatole France, 1844 – 1924

Student Science Blogging, Part II

A few days ago I wrote about the Zoo School in Asheboro, NC. It is even better than I thought – I got in touch with their lead teacher and she told me that all of their students have laptops in the classroom with wireless access. Their classrooms also have Smartboards and other cool technology. And they are very interested in their students utilizing the Web in a variety of ways, including blogging.
And obviously, some of them already are, as one of the students discovered the post on her own and posted this comment that I want to promote to the front page:

I am a Senior at the North Carolina Zoo School and it is a wonderful experience. You get to work with some of the latest technology, work on projects by yourself, and also work on research papers that will take you inside the Zoo. I would recommend the Zoo School to everyone who lives near one of the four Zoo Schools in the U.S. -Anne Mayberry

I invited the teachers and students to the Science Blogging Conference – Asheboro is barely an hour away from RTP. There, they can schmooze with other students, scientists, science blogging stars, publishers, science teachers, science writers and journalists and participate in all the sessions, including the two education-focused sessions, the first about using the Web in teaching led by David Warlick, a nationally recognized expert on the use of online technologies in teaching, and the other one on ‘Student Blogging: K to PhD’, moderated by a group of undergraduate and graduate students, but we certainly hope that the students from K-12 will also participate in the discussion.

A Full Deck of Cards!

Yes, we can play now – 52 with no Jockers! Though, to play rummy, we’d need a whole another deck. And we can get there fast if you hurry up!

Student Science Blogging, Part I

A few days ago PZ Myers announced he will have some special guest bloggers on Pharyngula soon. While the first commenters were guessing Big Names, like Dawkins, my comment was: “I am hoping for your students….”. A little later, PZ Myers updated his post to announce that yes, indeed, it will be his Neuroscience students who will be guest-blogging this semester.
And today, they started. They were thrown into a lions’ den, but they are doing great, holding their own against the famously ruthless Pharynguloids who call them ‘kids’ and then slam them anyway in many, many comments (they are all among the ‘most active posts’ on scienceblogs.com today!). Talk about Baptism By Fire (or is it Counter-Baptism?)! It’s nice that PZ Myers is protective of them (and ruthless with the commenters who cross the line), but it seems the students are doing just fine on their own so far.
Anyway, check their first posts and keep an eye on them the next few weeks or so – they are bright young people :
New kid on the block by Bright Lights
An Introduction by Blue Expo
I’ll give this a shot… by Lua Yar
A Very new kid on the block! by Bright Lights
Hey folks by Mark Antimony

Open Education: HippoCampus.org

In the news today, I received a link to this press release:
Open education resource site HippoCampus launches:

The Monterey Institute for Technology and Education has launched an interactive homework help Web site funded by the William and Flora Hewlett Foundation. The Monterey-based institution said late Thursday that open education resource site HippoCampus provides comprehensive high school, advanced placement, and college general education course content.

You can now go to the HippoCampus site and test it out and start using it.

New and Exciting in PLoS Community Journals

As always on Fridays, there are new papers published in PLoS Genetics, PLoS Pathogens and PLoS Computational Biology. I like to take my own picks, and today I pick this pre-publication (there is a provisional PDF online) in my own field:
Meta-analysis of Drosophila Circadian Microarray Studies Identifies a Novel Set of Rhythmically Expressed Genes:

Five independent groups have reported microarray studies that identify dozens of rhythmically expressed genes in the fruit fly Drosophila melanogaster. Limited overlap among the lists of discovered genes makes it difficult to determine which, if any, exhibit truly rhythmic patterns of expression. We reanalyzed data from all five reports and found two sources for the observed discrepancies, the use of different expression pattern detection algorithms and underlying variation among the data sets. To improve upon the methods originally employed, we developed a new analysis that involves compilation of all existing data, application of identical transformation and standardization procedures followed by ANOVA based statistical pre-screening, and three separate classes of post-hoc analysis: cross-correlation to various cycling waveforms, autocorrelation, and a previously described Fast Fourier Transform (FFT) based technique [1-3]. Permutation based statistical tests were used to derive significance measures for all post-hoc tests. We find application of our method, most significantly the ANOVA prescreening procedure, to significantly reduce the false discovery rate (FDR) relative to that observed among the results of the original five reports while maintaining desirable statistical power. We identify a set of 81 cycling transcripts previously found in one or more of the original reports as well as a novel set of 133 not found in any of the original studies. We introduce a novel analysis method that compensates for variability observed among the original five Drosophila circadian array reports. We identify a set of previously found cycling transcripts as well as a set of novel ones. Based on the statistical fidelity of our meta-analysis results, and the results of our initial validation experiments (quantitative RT-PCR), we predict many of our newly found genes to be bona fide cyclers, and suggest that they may lead to new insights into the pathways through which clock mechanisms regulate behavioral rhythms.

The other one I chose is this one, as it is related to some stuff I published way back when I was still in the lab:
Food Deprivation Attenuates Seizures through CaMKII and EAG K+ Channels:

Accumulated research has demonstrated the beneficial effects of dietary restriction on extending lifespan and increasing cellular stress resistance. However, reducing nutrient intake has also been shown to direct animal behaviors toward food acquisition. Under food-limiting conditions, behavioral changes suggest that neuronal and muscle activities in circuits that are not involved in nutrient acquisition are down-regulated. These dietary-regulated mechanisms, if understood better, might provide an approach to compensate for defects in molecules that regulate cell excitability. We previously reported that a neuromuscular circuit used in Caenorhabditis elegans male mating behavior is attenuated under food-limiting conditions. During periods between matings, sex-specific muscles that control movements of the male’s copulatory spicules are kept inactive by UNC-103 ether-a-go-go-related gene (ERG)-like K+ channels. Deletion of unc-103 causes ∼30%-40% of virgin males to display sex-muscle seizures; however, when food is deprived from males, the incidence of spontaneous muscle contractions drops to 9%-11%. In this work, we used genetics and pharmacology to address the mechanisms that act parallel with UNC-103 to suppress muscle seizures in males that lack ERG-like K+ channel function. We identify calcium/calmodulin-dependent protein kinase II as a regulator that uses different mechanisms in food and nonfood conditions to compensate for reduced ERG-like K+ channel activity. We found that in food-deprived conditions, calcium/calmodulin-dependent protein kinase II acts cell-autonomously with ether-a-go-go K+ channels to inhibit spontaneous muscle contractions. Our work suggests that upregulating mechanisms used by food deprivation can suppress muscle seizures.

Today’s Carnivals

Carnival of the Liberals #47 is up on Plural Politics.
Friday Ark #156 is up on the Modulator.

Ethics Code for Scientists?

BBC reports that scientists working in the UK government have adopted a Scientific Ethics Code, written by Professor Sir David King. Here is the Code:

Act with skill and care, keep skills up to date
Prevent corrupt practice and declare conflicts of interest
Respect and acknowledge the work of other scientists
Ensure that research is justified and lawful
Minimise impacts on people, animals and the environment
Discuss issues science raises for society
Do not mislead; present evidence honestly

Several bloggers have responded to this. Here is Janet’s take:

They seem like quite sensible principles — so sensible, in fact, that you might ask why they need to be formalized in a code of ethics. Don’t scientists already know that they should be honest, be fair to their fellow scientists, avoid conflicts of interest, keep up with the literature in their field, and all that good stuff?
Surely they do, but we’ve noted before that knowing what you ought to do and actually doing it are two different things. The question then becomes, how exactly does having a code of ethics help?

Oldcola has several suggestions to edit or add to the Code – I like them all but of course I especially like this one:

In general, I would like to make it mandatory to spend a week per year discussing issues science raises for society for every single scientist. And maybe mandatory to read and rate papers on PLoS ONE. Now, come on, I’m not joking. And yes, I do started doing so myself, with a minimal objective of 3/week.
And maybe the scientists should be trained to blog, also.

Perhaps they will discuss the Code at the ESF-ORI First World Conference on
RESEARCH INTEGRITY: FOSTERING RESPONSIBLE RESEARCH

What do you think?

A kick-ass Conference: Autonomy, Singularity, Creativity

Unfortunately, due to the Murphy’s Law of conference dates, I will have to miss this fantastic meeting, because I will at the time be at another fantastic meeting, but if you can come, please do – registration will be open online in a few days.

Autonomy, Singularity, Creativity

The conference theme is about bringing scientists and humanities scholars to talk about ways that science is changing human life.

November 8th, 9th, and 10th, the National Humanities Center will host the second ASC conference.

And the program features a Who’s Who list:

Thursday, November 8th
Frans de Waal
Martha Nussbaum
Friday, November 9th
Dan Batson
Margaret Boden
Joseph Carroll
Frans de Waal
Evelyn Fox Keller
David Krakauer
William Lycan
Martha Nussbaum
Steven Pinker
Paul Rabinow
Margery Safir
Robert Sapolsky
Saturday, November 10th
Terrence Deacon
Daniel Dennett
Alex Rosenberg
Mark Turner

Of those, I have seen Sapolsky, Fox Keller and Deacon speak before, and I know Alex Rosenberg, and for each one of them alone, it is worth showing up!

ClockQuotes

All of us are watchers – of television, of time clocks, of traffic on the freeway – but few are observers. Everyone is looking, not many are seeing.
– Peter M. Leschak

My Picks From ScienceDaily

Fire Ants Killing Baby Song Birds At High Rates:

Red imported fire ants may be killing as many as a fifth of baby song birds before they leave the nest, according to research recently completed at Texas A&M University.

Ecologist Finds Dire Devastation Of Snake Species Following Floods:

In science, it’s best to be good, but sometimes it’s better to be lucky.

Fossil Whale Puts Limit On Origin Of Oily, Buoyant Bones In Whales:

A fossilized whale skeleton excavated 20 years ago amid the stench and noise of a seabird and elephant seal rookery on California’s Año Nuevo Island turns out to be the youngest example on the Pacific coast of a fossil whale fall and the first in California, according to University of California, Berkeley, paleontologists.

Wild Male Chimpanzees Use Stolen Food To Win Over The Opposite Sex:

They say that the way to a man’s heart is through his stomach and the same could be said for female chimpanzees. Researchers studying wild chimps in West Africa have discovered that males pinch desirable fruits from local farms and orchards as a means of attracting female mates.

Predation Linked To Evolution, Study Suggests:

The fossil record seems to indicate that the diversity of marine creatures increased and decreased over hundreds of millions of years in step with predator-prey encounters, Virginia Tech geoscientists report in the Proceedings of the National Academy of Science.

Coral Reef Fish Harbor An Unexpectedly High Biodiversity Of Parasites:

IRD researchers showed that Epinephilus maculates, a fairly abundant species of grouper off New Caledonia, was parasitized by 12 species of microscopic monogenean worms. This diversity of parasites has just been confirmed also in the malabar grouper, Epinephilus malabaricus, another the coral reef species. If such a level of parasite diversity prevails in all coral-reef fish, tens of thousands of parasite species are in this ecosystem waiting to be discovered.

‘Killer Bees’ Now Established In New Orleans:

Africanized honeybees have been found in the New Orleans area since July of 2005, but the regularity and frequency of finding them there is new cause for concern.

Ancient Egyptians Mummified Their Cats With Utmost Care:

Examination of Egyptian mummies has shown that animals such as cats and crocodiles were given a far more careful and expensive trip to the afterlife than previously thought.

Extinction Crisis Escalates: Red List Shows Apes, Corals, Vultures, Dolphins All In Danger:

Life on Earth is disappearing fast and will continue to do so unless urgent action is taken, according to the 2007 IUCN Red List of Threatened Species.

The Anthropology Blog Carnival

The latest edition of the Four Stone Hearth is up on John Hawks Weblog.

Pseudo-moving!

Well, I was busy with work and everything, but behind the scenes, Mrs.Coturnix took some vacation time and started completely re-doing our apartment with a help of two of her best friends. It already looks better than ever and feels great, but it is not done yet. Oh, no. This weekend, we’ll be taking the cats to the vet, kids and the dog to Grandma’s house, bringing in a truck and loading all of our stuff on it so people can come in on Monday and Tuesday and paint, replace the carpets and vinyl floors, etc., so we can move back in on Tuesday night. I’ll be going back and forth between Raleigh and Chapel Hill, taking the kids to and from school and spending my time in my ‘office’ on the corner working during those two days. How is that going to affect my blogging? Who knows. Depends on Grandma’s internet connection and how much time all the kids (and their cousins) will let me spend online.

Space-blogging of the week

Carnival of Space #20 is up on Music of the Spheres

Skeptical Saloon

Fighting against pseudoscience, quackery and superstition sometimes resembles the Wild, Wild West, so it is quite appropriate that the latest edition of the Skeptic’s Circle is a Western set in a Saloon in a small town somewhere Out West: Brent Rassmussen narrates.

Will Raymond For President!

OK, that is an overstatement (for now). Will Raymond for Town Council!
There. That’s better.
I thought Will must be busy as I did not hear from him lately and he did not show up at any of the recent bloggy events in the area. So, he was busy preparing for his second run for the Town Council. He did not make it last time around, but now the voters know him better, so anything can happen! And having the broad support of local bloggers is not something to scorn at in a place like Chapel Hill either!
I am sure that he’ll announce on his blog when he needs locals to volunteer, but until then (or if you are not local), you can always help him with some money. He calculates that the campaign will cost about $5000 and he already has collected around $600. We can help him have a good start by donating today. I just did.

ClockQuotes

One day at a time – this is enough. Do not look back and grieve over the past, for it is gone: and do not be troubled about the future, for it has not yet come. Live in the present, and make it so beautiful that it will be worth remembering.
– Ida Scott Taylor

Today’s Carnivals

Tangled Bank #88 is up on Behavioral Ecology Blog
History Carnival LVI is up on Walking the Berkshires
The 136th Carnival of Education is up on History Is Elementary
The newest edition of the Carnival of the Liberals will be posted some time today at Eteraz.org

ClockQuotes

Though I am not naturally honest, I am so sometimes by chance.
– William Shakespeare

My Picks From ScienceDaily

Was Ability To Run Early Man’s Achilles Heel?:

The earliest humans almost certainly walked upright on two legs but may have struggled to run at even half the speed of modern man, new research suggests.

Tasmanian Tiger No Match For Dingo:

The wily dingo out-competed the much larger marsupial thylacine by being better built anatomically to resist the “mechanical stresses” associated with killing large prey, say Australian scientists.

A Dog In The Hand Scares Birds In The Bush:

New research showing that dog-walking in bushland significantly reduces bird diversity and abundance will lend support to bans against the practice in sensitive bushland and conservation areas.

Neuronal Conduction Of Excitation Without Action Potentials Based On Ceramide Production:

Researchers have succeeded in demonstrating that a neuronal network in mammals can work perfectly with a mode of conduction of excitation that is independent of action potentials. This new mechanism involves molecules known to play a role in numerous mechanisms of cell functioning, but not hitherto in conduction of excitation. To elucidate this mechanism, the teams have used a model of integrated physiology on an in vitro preparation in the mammal. This study has been performed using neuropharmacological and biochemical techniques.

Chocolate Is The Most Widely Craved Food, But Is It Really Addictive?:

Chocolate is the most widely and frequently craved food. People readily admit to being ‘addicted to chocolate’ or willingly label themselves as ‘chocoholics’. A popular explanation for this is that chocolate contains mood-enhancing (psychoactive) ingredients that give it special appeal.

How Vitamin C Stops Cancer:

Nearly 30 years after Nobel laureate Linus Pauling famously and controversially suggested that vitamin C supplements can prevent cancer, a team of Johns Hopkins scientists have shown that in mice at least, vitamin C – and potentially other antioxidants – can indeed inhibit the growth of some tumors ¯ just not in the manner suggested by years of investigation.

Molecular Probe ‘Paints’ Cancer Cells In Living Animals, Researchers Find:

Researchers at the Stanford University School of Medicine have developed a molecular probe that sets aglow tumor cells within living animals. Their goal is to use the probe to improve the diagnosis and treatment of cancer and other diseases.

Efforts To Save Greenback Cutthroat Trout Snagged: Wrong Fish Restocked For Decades:

A new study led by the University of Colorado at Boulder indicates biologists trying to save Colorado’s native greenback cutthroat trout from extinction over the past several decades through hatchery propagation and restocking efforts have, in most cases, inadvertently restored the wrong fish.

Gray Whales A Fraction Of Historic Levels, Genetic Research Shows:

Gray whales in the Pacific Ocean, long thought to have fully recovered from whaling, were once three to five times as plentiful as they are now, according to a new article.

Why Genes Of One Parent Are Expressed Over Genes Of The Other: New Ideas In Genomic Imprinting:

How we come to express the genes of one parent over the other is now better understood through studying the platypus and marsupial wallaby — and it doesn’t seem to have originated in association with sex chromosomes.

Wild Male Chimpanzees Use Stolen Food To Win Over The Opposite Sex:

They say that the way to a man’s heart is through his stomach and the same could be said for female chimpanzees. Researchers studying wild chimps in West Africa have discovered that males pinch desirable fruits from local farms and orchards as a means of attracting female mates.

Prehistoric Reptiles From Russia Possessed The First Modern Ears:

The discovery of the first anatomically modern ear in a group of 260 million-year-old fossil reptiles significantly pushes back the date of the origin of an advanced sense of hearing, and suggests the first known adaptations to living in the dark.

Biological Invasions Can Begin With Just One Insect:

A new study by York University biologists Amro Zayed and Laurence Packer has shown that a lone insect can initiate a biological invasion.

Student Proves Giant Whorled Sunflower’s Extreme Rarity:

For several months last spring, the Vanderbilt greenhouse held more individual plants of a rare species of native sunflower than are known to exist in the wild. This unusual bounty was the result of research being conducted by Jennifer Ellis, a doctoral student in the biological sciences department.

Download the actual papers and blog away!

Blogrolling for Today

Learning, Playing, Cooking…


tHE tiDE cHAsER


Pulau Hantu – A celebration of marine life


Manta Blog


Sea Slug Forum


The bird ecology study group (Singapore)


Nature Spies

New and Exciting in PLoS ONE

Holy Cow! Every Tuesday night I like to link to 5-6 of the brand new papers on PLoS ONE that I find personally most intriguing. But today, it is so difficult to choose – I want to highlight something like 20 out of today’s 39. So, here are a few and you definitely go and see the whole list for yourself (and you know the drill, as I parrot it every week: read, rate, comment):
Impedance-Matching Hearing in Paleozoic Reptiles: Evidence of Advanced Sensory Perception at an Early Stage of Amniote Evolution

Insights into the onset of evolutionary novelties are key to the understanding of amniote origins and diversification. The possession of an impedance-matching tympanic middle ear is characteristic of all terrestrial vertebrates with a sophisticated hearing sense and an adaptively important feature of many modern terrestrial vertebrates. Whereas tympanic ears seem to have evolved multiple times within tetrapods, especially among crown-group members such as frogs, mammals, squamates, turtles, crocodiles, and birds, the presence of true tympanic ears has never been recorded in a Paleozoic amniote, suggesting they evolved fairly recently in amniote history.
In the present study, we performed a morphological examination and a phylogenetic analysis of poorly known parareptiles from the Middle Permian of the Mezen River Basin in Russia. We recovered a well-supported clade that is characterized by a unique cheek morphology indicative of a tympanum stretching across large parts of the temporal region to an extent not seen in other amniotes, fossil or extant, and a braincase specialized in showing modifications clearly related to an increase in auditory function, unlike the braincase of any other Paleozoic tetrapod. In addition, we estimated the ratio of the tympanum area relative to the stapedial footplate for the basalmost taxon of the clade, which, at 23:1, is in close correspondence to that of modern amniotes capable of efficient impedance-matching hearing.
Using modern amniotes as analogues, the possession of an impedance-matching middle ear in these parareptiles suggests unique ecological adaptations potentially related to living in dim-light environments. More importantly, our results demonstrate that already at an early stage of amniote diversification, and prior to the Permo-Triassic extinction event, the complexity of terrestrial vertebrate ecosystems had reached a level that proved advanced sensory perception to be of notable adaptive significance.

Chimpanzees Share Forbidden Fruit:

It is common for chimpanzee communities that engage in hunting to use meat as a “social tool” for nurturing alliances and social bonds; however the sharing of wild plant foods is rare. As part of a study directly observing adult chimpanzees in West Africa, Hockings and colleagues found that cultivated plant foods were shared more frequently than wild plant foods. The results suggest that the challenge of crop-raiding provides adult male chimpanzees with food that may be considered highly desirable to the opposite sex.

Sleep in the Human Hippocampus: A Stereo-EEG Study

Our data imply that cortical slow oscillation is attenuated in the hippocampal structures during NREM sleep. The most peculiar feature of hippocampal sleep is the increased synchronization of the EEG rhythms during REM periods. This state of resonance may have a supportive role for the processing/consolidation of memory.

Successful Biological Invasion despite a Severe Genetic Load

Through population genetic analysis of neutral microsatellite markers and a gene experiencing balancing selection, we demonstrate that the solitary bee Lasioglossum leucozonium experienced a single and severe bottleneck during its introduction from Europe. Paradoxically, the success of L. leucozonium in its introduced range occurred despite the severe genetic load caused by single-locus complementary sex-determination that still turns 30% of female-destined eggs into sterile diploid males, thereby substantially limiting the growth potential of the introduced population. Using stochastic modeling, we show that L. leucozonium invaded North America through the introduction of a very small number of propagules, most likely a singly-mated female. Our results suggest that chance events and ecological traits of invaders are more important than propagule pressure in determining invasion success, and that the vigilance required to prevent invasions may be considerably greater than has been previously considered.

Self-Referential Cognition and Empathy in Autism

Individuals with autism spectrum conditions (ASC) are known to have difficulties empathizing with others, but this study shows them to have lesser self awareness as well. Thirty individuals with Asperger Syndrome or high-functioning autism were compared to matched controls in a number of standard tests. Individuals with ASC had broad impairments in both self-referential cognition and empathy, suggesting specific dysfunctions within brain areas such as the medial prefrontal cortex.

Ubx Regulates Differential Enlargement and Diversification of Insect Hind Legs

In many insect groups, such as in grasshoppers and crickets, there has been an evolutionary trend over time towards the development of larger hind legs. The actual processes responsible for this trend are still to be determined. This paper examines the molecular basis of hind leg enlargement in the house cricket and the milkweed bug. The results show that the gene Ultrabithorax (Ubx) regulates the differential growth and enlargement of the hind leg, suggesting that the diversity of insect hind leg size can result from alterations in the timing and duration of expression of a single gene.

Crown Plasticity and Competition for Canopy Space: A New Spatially Implicit Model Parameterized for 250 North American Tree Species

We introduce a new, simple and rapidly-implemented model-the Ideal Tree Distribution, ITD-with tree form (height allometry and crown shape), growth plasticity, and space-filling, at its core. The ITD predicts the canopy status (in or out of canopy), crown depth, and total and exposed crown area of the trees in a stand, given their species, sizes and potential crown shapes. We use maximum likelihood methods, in conjunction with data from over 100,000 trees taken from forests across the coterminous US, to estimate ITD model parameters for 250 North American tree species. With only two free parameters per species-one aggregate parameter to describe crown shape, and one parameter to set the so-called depth bias-the model captures between-species patterns in average canopy status, crown radius, and crown depth, and within-species means of these metrics vs stem diameter. The model also predicts much of the variation in these metrics for a tree of a given species and size, resulting solely from deterministic responses to variation in stand structure.

Retinal Encoding of Ultrabrief Shape Recognition Cues

Shape encoding mechanisms can be probed by the sequential brief display of dots that mark the boundary of the shape, and delays of less that a millisecond between successive dots can impair recognition. It is not entirely clear whether this is accomplished by preserving stimulus timing in the signal being sent to the brain, or calls for a retinal binding mechanism. Two experiments manipulated the degree of simultaneity among and within dot pairs, requiring also that the pair members be in the same half of the visual field or on opposite halves, i.e., across the midline from one another. Recognition performance was impaired the same for these two conditions. The results make it likely that simultaneity of cues is being registered within the retina. A potential mechanism is suggested, calling for linkage of stimulated sites through activation of PA1 cells. A third experiment confirmed a prior finding that the overall level of recognition deficit is partly a function of display-set size, and affirmed submillisecond resolution in binding dot pairs into effective shape-recognition cues.

Nonassociative Learning Promotes Respiratory Entrainment to Mechanical Ventilation

Patient-ventilator synchrony is a major concern in critical care and is influenced by phasic lung-volume feedback control of the respiratory rhythm. Routine clinical application of positive end-expiratory pressure (PEEP) introduces a tonic input which, if unopposed, might disrupt respiratory-ventilator entrainment through sustained activation of the vagally-mediated Hering-Breuer reflex. We suggest that this potential adverse effect may be averted by two differentiator forms of nonassociative learning (habituation and desensitization) of the Hering-Breuer reflex via pontomedullary pathways.

Declining Rates in Male Circumcision amidst Increasing Evidence of its Public Health Benefit

Male circumcision was common among men seeking STD services in San Francisco but has declined substantially in recent decades. Male circumcision rates differed by race/ethnicity and sexual orientation. Given recent studies suggesting the public health benefits of male circumcision, a reconsideration of national male circumcision policy is needed to respond to current trends.

Degeneration of the Olfactory Guanylyl Cyclase D Gene during Primate Evolution

The mammalian olfactory system consists of several subsystems that detect specific sets of chemical cues and underlie a variety of behavioral responses. ———— These data suggest that signaling through GC-D-expressing cells was probably compromised more than 40 million years ago, prior to the divergence of New World monkeys from Old World monkeys and apes, and thus cannot be involved in chemosensation in most primates.

No Language-Specific Activation during Linguistic Processing of Observed Actions

These results show that linguistic tasks do not only share common neural representations but essentially activate a subset of the action observation network if identical stimuli are used. Our findings strongly support the evolutionary hypothesis that fronto-parietal systems matching action execution and observation were co-opted for language, a process known as exaptation.

Age- and Sex-Specific Mortality Patterns in an Emerging Wildlife Epidemic: The Phocine Distemper in European Harbour Seals

Analyses of the dynamics of diseases in wild populations typically assume all individuals to be identical. However, profound effects on the long-term impact on the host population can be expected if the disease has age and sex dependent dynamics. The Phocine Distemper Virus (PDV) caused two mass mortalities in European harbour seals in 1988 and in 2002. We show the mortality patterns were highly age specific on both occasions, where young of the year and adult (>4 yrs) animals suffered extremely high mortality, and sub-adult seals (1-3 yrs) of both sexes experienced low mortality. Consequently, genetic differences cannot have played a main role explaining why some seals survived and some did not in the study region, since parents had higher mortality levels than their progeny. Furthermore, there was a conspicuous absence of animals older than 14 years among the victims in 2002, which strongly indicates that the survivors from the previous disease outbreak in 1988 had acquired and maintained immunity to PDV. These specific mortality patterns imply that contact rates and susceptibility to the disease are strongly age and sex dependent variables, underlining the need for structured epidemic models for wildlife diseases. Detailed data can thus provide crucial information about a number of vital parameters such as functional herd immunity. One of many future challenges in understanding the epidemiology of the PDV and other wildlife diseases is to reveal how immune system responses differ among animals in different stages during their life cycle. The influence of such underlying mechanisms may also explain the limited evidence for abrupt disease thresholds in wild populations.

A Fully Automated Robotic System for Microinjection of Zebrafish Embryos

As an important embodiment of biomanipulation, injection of foreign materials (e.g., DNA, RNAi, sperm, protein, and drug compounds) into individual cells has significant implications in genetics, transgenics, assisted reproduction, and drug discovery. This paper presents a microrobotic system for fully automated zebrafish embryo injection, which overcomes the problems inherent in manual operation, such as human fatigue and large variations in success rates due to poor reproducibility. Based on computer vision and motion control, the microrobotic system performs injection at a speed of 15 zebrafish embryos (chorion unremoved) per minute, with a survival rate of 98% (n = 350 embryos), a success rate of 99% (n = 350 embryos), and a phenotypic rate of 98.5% (n = 210 embryos). The sample immobilization technique and microrobotic control method are applicable to other biological injection applications such as the injection of mouse oocytes/embryos and Drosophila embryos to enable high-throughput biological and pharmaceutical research.

Evidence for Paternal Leakage in Hybrid Periodical Cicadas (Hemiptera: Magicicada spp.)

Mitochondrial inheritance is generally assumed to be maternal. However, there is increasing evidence of exceptions to this rule, especially in hybrid crosses. In these cases, mitochondria are also inherited paternally, so “paternal leakage” of mitochondria occurs. It is important to understand these exceptions better, since they potentially complicate or invalidate studies that make use of mitochondrial markers. We surveyed F1 offspring of experimental hybrid crosses of the 17-year periodical cicadas Magicicada septendecim, M. septendecula, and M. cassini for the presence of paternal mitochondrial markers at various times during development (1-day eggs; 3-, 6-, 9-week eggs; 16-month old 1st and 2nd instar nymphs). We found evidence of paternal leakage in both reciprocal hybrid crosses in all of these samples. The relative difficulty of detecting paternal mtDNA in the youngest eggs and ease of detecting leakage in older eggs and in nymphs suggests that paternal mitochondria proliferate as the eggs develop. Our data support recent theoretical predictions that paternal leakage may be more common than previously estimated.

Today’s Carnivals

Carnival of the Professoriate #1 and #2 are up on ACRLog.
Grand Rounds are up at The Efficient MD
Carnival of Homeschool #89 is up on Why Homeschool

Meetup tomorrow night

The Triangle blogging season has started, so I hope many of you locals and visitors join us for the first meetup of the year:

The Durham bloggers meetup will be the second Wednesday of each month at 6pm at Tyler’s Tap Room in the American Tobacco Warehouse District. First meetup will be Sept.12th. Anton will coordinate. Duke is rapidly taking to blogging, and we’ve discovered some cool food bloggers in Durham — and Pam Spaulding has represented the city well — so we hope this meetup gets good attendance.

I bet there will be a lot of science and health bloggers there! What with Anton’s new job, and the recent growth of Duke student blogging: see these young, new bloggers for instance, as well as the already established bloggers like Abel, Sheril, Eric and Sarah, to name just a few (see more on top of this page), this is going to be a fun evening, so join us tomorrow night at 6pm.

My Picks From ScienceDaily

Device To Predict Proper Light Exposure For Human Health:

Scientists have long known that the human body runs like clockwork, guided by a circadian system that responds to daily patterns of light and darkness. Now a team of researchers is developing a personal device to measure daily light intake and activity, which could allow them to predict optimal timing for light therapy to synchronize the circadian clock to the 24-hour solar day and relieve psychosocial stress.

Pivotal Hearing Structure Revealed:

Scientists have shed light on how our bodies convert vibrations entering the ear into electrical signals that can be interpreted by the brain. Exactly how the electrical signal is generated has been the subject of ongoing research interest. When a noise occurs, such as a car honking or a person laughing, sound vibrations entering the ear first bounce against the eardrum, causing it to vibrate. This, in turn, causes three bones in the middle ear to vibrate, amplifying the sound. Vibrations from the middle ear set fluid in the inner ear, or cochlea, into motion and a traveling wave to form along a membrane running down its length.

PCBs May Threaten Killer Whale Populations For 30-60 Years:

Orcas or killer whales may continue to suffer the effects of contamination with polychlorinated biphenyls (PCBs) for the next 30 — 60 years, despite 1970s-era regulations that have reduced overall PCB concentrations in the environment, researchers in Canada report. The study calls for better standards to protect these rare marine mammals.

Marine Team Finds Surprising Evidence Supporting A Great Biblical Flood:

Did the great flood of Noah’s generation really occur thousands of years ago? Was the Roman city of Caesarea destroyed by an ancient tsunami? Will pollution levels in our deep seas remain forever a mystery? These are just a few of the questions that are being addressed by a new environmental marine research team from Tel Aviv University and the non-profit research and education organization, EcoOcean.

Dinosaur To Birds: Height Or Flight?:

Paleontologists have long theorized that miniaturization was one of the last stages in the long series of changes required in order for dinosaurs to make the evolutionary “leap” to take flight and so become what we call birds. New evidence from a tiny Mongolian dinosaur, however, may leave some current theories about the evolution of flight up in the air.

ClockQuotes

My evening visitors, if they cannot see the clock, should find the time in my face.
– Ralph Waldo Emerson

Cool Stuff on PLoS Today

In PLoS Biology:
High-Resolution Genome-Wide Dissection of the Two Rules of Speciation in Drosophila:

The evolution of reproductive isolation is a fundamental step in the origin of species. One kind of reproductive isolation, the sterility and inviability of species hybrids, is characterized by two of the strongest rules in evolutionary biology. The first is Haldane’s rule: for species crosses in which just one hybrid sex is sterile or inviable, it tends to be the sex defined by having a pair of dissimilar sex chromosomes (e.g., the “XY” of males in humans). The second rule is the large X effect: the X chromosome has a disproportionately large effect on hybrid fitness. We dissected the genetic causes of these two rules of speciation by replacing many small chromosomal segments of the fruit fly Drosophila sechellia with those of a closely related species, D. mauritiana. Together, these segments cover 70% of the genome. We found that virtually all segments causing hybrid sterility or inviability act recessively and that hybrid male sterility is by far the most common type of hybrid incompatibility, confirming two leading theories about the causes of Haldane’s rule. We also found that X-linked segments are more likely to cause hybrid male sterility than similarly sized autosomal segments. These results show that the large X effect is caused by a higher density of hybrid incompatibilities on the X chromosome.

In PLos Medicine – a series of policy papers from the Grand Challenges in Global Health initiative aimed towards solving health problems in the developing world:
Grand Challenges in Global Health: The Ethical, Social and Cultural Program:
Grand Challenges in Global Health: Ethical, Social, and Cultural Issues Based on Key Informant Perspectives:
Grand Challenges in Global Health: Community Engagement in Research in Developing Countries:
Grand Challenges in Global Health: Engaging Civil Society Organizations in Biomedical Research in Developing Countries:
In PLoS Computational Biology – a compilation of wildly popular “Ten Simple Rules” articles on the professional development for career scientists, now all on a single PDF:
Ten Simple Rules for a Good Poster Presentation
Ten Simple Rules for Making Good Oral Presentations
Ten Simple Rules for a Successful Collaboration
Ten Simple Rules for Selecting a Postdoctoral Position
Ten Simple Rules for Reviewers
Ten Simple Rules for Getting Grants
Ten Simple Rules for Getting Published

Today’s Carnivals

Encephalon #31 is up on Dr.Deb‘s blog.
The 15th Edition of The International Carnival Of Pozitivities is up on Living Mindfully with HIV/AIDS.
The carnival of the Green #94 is up on Camphor’s.

ClockQuotes

Time is like a river made up of the events which happen, and a violent stream; for as soon as a thing has been seen, it is carried away, and another comes in its place, and this will be carried away too.
– Marcus Aurelius

Now you can see “Flock of the Dodos” in the peace of your home

Randy Olson’s movie had a very short and limited release. Reed rallied the troops so NCSU library got a copy and there was a public viewing that I could not attend.
But now, everyone can watch it, as Jennifer reports. It is available, for instance, on amazon.com. I’ll put it on my wishlist for now, so it is there, ready for me to buy it when I get some money next time.