Author Archives: Bora Zivkovic

Twelve Months of A Blog Around The Clock

Thanks to DrugMonkey for the reminder. We do this meme every year in December – the only rule is to “post the link and first sentence from the first blog entry for each month of the past year.” Here we go (ClockQuotes are usually the first post of the day and thus of the month, so there is not much in terms of my own words):
January:

A man may fail many times, but he isn’t a failure until he begins to blame someone else.

February:

I have called this principle, by which, each slight variation, if useful, is preserved, by the term of Natural Selection.

March:

Two things are aesthetically perfect in the world – the clock and the cat.

April:

People spend too much time finding other people to blame, too much energy finding excuses for not being what they are capable of being, and not enough energy putting themselves on the line, growing out of the past, and getting on with their lives.

May:

After a lovely flight, Catriona met me at the airport.

June:

The important thing in science is not so much to obtain new facts as to discover new ways of thinking about them.

July:

Mammalian Clock Protein Responds Directly To Light: We all know that light effects the growth and development of plants, but what effect does light have on humans and animals?

August:

I hope you have not been leading a double life, pretending to be wicked, and being really good all the time. That would be hypocrisy.

September:

The individual woman is required … a thousand times a day to choose either to accept her appointed role and thereby rescue her good disposition out of the wreckage of her self-respect, or else follow an independent line of behavior and rescue her self-respect out of the wreckage of her good disposition.

October:

Failure is simply the opportunity to begin again, this time more intelligently.

November:

You don’t tell deliberate lies, but sometimes you have to be evasive.

December:

Checking one’s incoming links on Sitemeter, Technorati and Google Blogsearch is essential tool for a blogger – it allows one to notice responses to one’s posts in approximately real time, so the blog-to-blog conversation can continue fluently.

But what if I really, truly don’t like green eggs and ham?

Even after Sam-I-Am persuades me to try them?
On the other hand, can we learn something from this book about selling science? Evolution? Are our anti-Creationist tactics, for instance, better or worse than Sam’s? Or is his strategy inappropriate for this topic?

What’s an office for?

You build a mine where the ore is. And facilities right next to the mine, to extract the metals from it. And a factory next to it that turns the raw metal into parts and objects. And a train station or a port next to it, so you can move the objects to the stores you built where the people are. And you also build a town where all your employees will live.
That’s how it’s always been done.
You cannot work the land, without living on it and getting your boots muddy. If you are hoarding something valuable, you need to hire night-guards who will actually show up at work. I understand, there are many jobs that require a person to show up at a particular place at a particular time to get the job done. The actors have to actually show up at the theater for the show to go on.
But many of those same companies also have offices and headquarters. Not to mention that more and more companies are dealing with information, education, knowledge, news or entertainment. Why do they still require people to show up at the office?
When the economic times are tough, why do CEOs fire people?
Why don’t they close the offices instead?
And keep the people?
Is it because they hate to relinquish personal micromanaging control?
That’s what telecommuting and coworking are all about. Recognition that the concept of the “office” is something that belongs to the previous millennium. All the office-typical work can now be done online.
If you force people to come to the office every day, they will resent the lack of freedom. They will resent you for being overbearing and controlling. People who rub elbows with each other every day are bound to sometimes rub each other the wrong way, starting animosities, cliques and general sense of disgruntleness. The result can be this. And will be, more and more, as the new generations were not brought up to suffer indignities in silence.
There is a lot of complaining going around the business leaders’ circles about the Millennials being lazy or demanding. No, the kids see an antiquated system and are working to change it from within, demanding that you change the way you do business – it is you who ‘don’t get it’, the kids are fine.
If you close the office and keep the employees, you will get stronger loyalty and greater job satisfaction. The job will get done better. People will come up with creative ideas that can save your company.
Furthermore, you will be able to hire the best – the people who live elsewhere and have no intention to move for the job, people who are aware of their quality and cannot be bullied into uprooting their families just to work for you.
Even better, if your employees are all around the world, this means that they are walking billboards for your company. They go around certain circles wherever they are and answer the usual question “what do you do?” every day. If they are all at the HQ, you need to pay for PR. If they are everywhere, the PR is automatic and free.
But apparently, the CEOs are not even aware how outdated their thinking is. A recent survey prompted some of them to think, for the first time, about the possibilities. It will be too late by the time they moved from “hmmm, interesting idea” to “yes, we’ll do this right now”.
Kevin Gamble asks:

When working with organizations, I’ve heard it said more than once, “People are our most important resource,” and yet how many are downsizing? Do you hear them seriously considering the savings that could accrue from closing unneeded offices? I have yet to hear a single person mention that their organizations are considering closing offices in order to preserve staffing. I have heard a few mentions of consolidation of offices, but that’s different.
Even without an economic meltdown the closing of offices makes total sense. Given our current situation, closing offices is a no-brainer. Seriously, unless you are selling or producing a physical product what function does your office serve? Make a list– yes, I am challenging you to justify why you keep your offices while at the same time downsizing your work force. I’ll wait… go make that list. Now which of those functions could be satisfied in some less expensive, and perhaps better manner by a co-working facility, hot-desking, or virtual meeting space?

Managing your online persona like a Superhero

Michelle asks: What Kind of Online Superhero Are You?

The easiest way to think of this is through superheroes, of course. In many comics such as Superman, Spiderman, and Batman, the protagonist has double life. The characters seem to cherish both roles-the closeness of relationships with others in the standard life and the power and responsibility of the superhero life. In other comics such as X Men, the hero and the person are the same. Wolverine, although sometimes escaping into solitude as Logan, is always a Mutant. Jean Grey is always Jean Grey and Storm is always Storm. There is no separation of character and alter ego here.
Do you use the internet world to escape or improve your current life? Do you have a deadbeat job and use it as an outlet for your talent? Or do you use it to show what you do on a day to day basis, with no need to escape your current situation? Which superhero are you when you are online?

I was told that Coturnix is just like real me in real life. I am online everywhere under my own name AND my handle. But then, my job is to be online 24/7 and promote myself in order to be able to promote the brand.
Others have very different personalities online and offline. They surprise you when you finally meet them in person. They even nurture that well-known difference, e.g., PZ Myers who is fiery online and very quiet and shy in person.
Then, some have two personalities even online. Perhaps they write under their own names on a personal blog where they post the pictures of kids so grandma can see them, and at the same time blogging pseudonymously on a political blog. And trying really hard to make sure nobody connects the dots.
But really, why shouldn’t passionate online advocates also be gentle family people and parents? Humans are not so one-dimensional.
A lot of nervousness about pseudonymity comes from the clash of cultures (“generations” in terms of worldview and technical modernity, not age) – how will one’s online presence affect one’s personal or professional life?
But in a couple of decades, this clash of cultures will be gone. The people hiring will be of the Facebook generation themselves. Seeing drunken party pictures on Facebook profiles of potential employees will be perfectly OK as that is what everyone has. No big deal. Actually, people who have no drunken party pictures online will be suspect – what are they hiding; why are they hyper-managing their online presence so much? That would be a red flag!
If you are not online, you do not exist. But if you are online, you have to manage your online persona. Don’t let others do it for you, because that may hurt you. Do what you need to do to make sure that the drunken party pictures are there, but only in the second 100 hits on Google, not right at the top. Make sure that what Google brings about you first is your best stuff and your best face. But don’t worry about the mere and inevitable presence of bad stuff (e.g., someone smearing you in a blog post) – it will be OK in the near future.
So, are you Superman or Wolverine?

ScienceOnline’09 – Danielle Lee in the media

scienceonline09.jpg
Danielle Lee was profiled in The St.Louis American the other day. Among else, the article says:

Recently, she was invited to co-moderate a panel on diversity in the sciences at the third annual ScienceOnline conference in Research Triangle Park, N.C. In January, scientists, science bloggers, journalists and students from around the world will meet to explore how online and digital technologies influence science communication and education, and vice versa.

SciBlings Abbie and Ed on Blogginheads.tv

erv and Ed Yong discuss science, blogging, science communication, HIV, and, er, vampires….

Molecules with funny names

Have you ever heard of Cummingtonite?

Cummingtonite or magnesium iron silicate hydroxide is a metamorphic amphibole with the chemical composition (Mg,Fe)7Si8O22(OH)2. Monoclinic cummingtonite is compositionally similar and polymorphic with orthorhombic anthophyllite, which is a much more common form of magnesium-rich amphibole, the latter being metastable. Cummingtonite shares few compositional similarities with alkali amphiboles such as arfvedsonite, glaucophane-riebeckite. There is little solubility between these minerals due to different crystal habit and inability of substitution between alkali elements and ferro-magnesian elements within the amphibole structure.

Well, there are many chemical compounds with funny names. Some of those are inadvertently funny, some on purpose, some are funny only when one looks at the structural formula, others only if one mispronounces the name slightly.
But they are all collected here – three long pages of funny examples. What I like about that site is that it is not just a simple listing of names. For each molecule, there is some additional information, e.g., the structural formula, a picture of the mineral, some chemical properties, how humans may use it, or how it got its name in the first place. So, you can find everything you need to know about Dickite, Fucitol, and Clitorin, for instance.
And once you are done with all three pages and want more, go to my SciBling’s blog Molecule of the Day and see how even the compunds with somber, serious names can be fun and interesting.

My picks from ScienceDaily

Why The ‘Perfect’ Body Isn’t Always Perfect: How Hormones Interact With Waist-to-hip Ratios In Women:

Having an imperfect body may come with some substantial benefits for some women, according to a new article in the December issue of Current Anthropology. The hormones that make women physically stronger, more competitive and better able to deal with stress also tend to redistribute fat from the hips to the waist, according to Elizabeth Cashdan, an anthropologist at the University of Utah. So in societies and situations where women are under pressure to procure resources, they may be less likely to have the classic hourglass figure.

Virtual Faces Created With Emotions, Moods And Personality:

A team of researchers from the University of the Balearic Islands (UIB) has developed a computer model that enables the generation of faces which for the first time display emotions and moods according to personality traits.

Mobile Phones Affect Memory In Laboratory Animals, Swedish Study Finds:

Can radiation from cell phones affect the memory? Yes — at least it appears to do so in rat experiments conducted at the Division of Neurosurgery, Lund University, in Sweden. Henrietta Nittby studied rats that were exposed to mobile phone radiation for two hours a week for more than a year. These rats had poorer results on a memory test than rats that had not been exposed to radiation.

La moisson de mon coeur (video)

Clock Quotes

Madness is consistent, which is more than can be said of poor reason. Whatever may be the ruling passion at the time continues so throughout the whole delirium, though it should last for life. Our passions and principles are steady in frenzy, but begin to shift and waver as we return to reason.
– Lawrence Sterne

Is this true? Perhaps it’s time for me to find where that TV controller is….

An Injection of Hard Science Boosts TV Shows’ Prognosis:

It’s no fiction: Scientific fact has usurped science fiction as TV’s favorite inspiration for prime-time story lines. And to keep everything on the up and up, show writers and producers are hiring scores of researchers and technical consultants to get the science straight.

We’ll remember H.M. even if he could not remember us

Everyone who’s ever taken a Neuroscience class in college remembers the strange case of H.M.
H.M. suffered from epilepsy. Back in 1953, his brain was operated on – some large chunks (the hippocampi) were removed. Epilepsy was gone. So was his memory.
He could remember his life before surgery, but could not form any new memories. More specifically, he could not remember any new events (‘declarative memory’), things that happened to him. Whatever he experienced years, months, weeks, days, hours, even minutes before, was forever lost. Every moment was a fresh moment. Every day a new beginning.
But there were things he could remember – new skills (‘episodic procedural memory’). If he practiced something one day, he would be better at it the next day even though he could not remember he ever did it before. His brain could remember those subconscious new memories.
Of course, he was studied and studied all his life. A lot of what we now know about memory, we learned from studies on H.M.
H.M. died this Tuesday at the age of 82. His real name was revealed after his death: Henry Gustav Molaison. When we talk about “heroes of science” we usually think about scientists. But in cases like Henry Gustav Molaison, the real scientific hero was a subject.
Mo, DrugMonkey, Greg Laden, Omnibrain and Jake Young have more.

Birds and Canada’s Tar Sands: Why America’s Number 1 Source of Oil is Removing Millions of Birds


More:
Millions of birds could die from oilsands development: report
Report Finds Millions of Birds will be Lost from Tar Sands Development

Top 100 Anthropology Blogs

Not so long ago, the four existing anthropology bloggers were wondering “where are the others?” Now, there are so many that one can pick the Top 100 and still leave some excellent blogs out! Check them out. Who is missing from the list?

The world that contains giant spherical bunnies and poisonous birds is worth living in

And blogging about! Obligatory readings of the day:
The Evolution of Poisonous Birds:

This research elegantly demonstrates that the evolution of just one character — in this case, toxicity — can profoundly affect the evolution of a suite of other characters, ranging from body size and behavioral traits to ecological niche.

Allen’s Rule, Phenotypic Plasticity, and The Nature of Evolution:

Within species … across clines or subspecies … this raises very significant (and addressable) questions regarding adaptation in the genetic vs. the ontogenetic realms. If Allen’s rule is primarily an ontogenetic effect in some species, one can still consider the possibility that it is adaptive, but the nature of adaptation becomes somewhat more nuanced. Which is appropriate, because adaptation is probably never as straight forward as the textbook version of it towards which we tend to gravitate.

No more science on CNN!

Oh, there was before? Anyway, the story that everyone on science blogs is talking about these days is that CNN has ditched their science and tech team. I was going to comment on it, but Chad puts it the best and there is no way I can best it. So go on over and add your 2c to the interesting ongoing discussion in the comments.
[Possibly related….]

New and Exciting in PLoS ONE

There are 9 new articles in PLoS ONE today. As always, you should rate the articles, post notes and comments and send trackbacks when you blog about the papers. You can now also easily place articles on various social services (CiteULike, Connotea, Stumbleupon, Facebook and Digg) with just one click. Here are my own picks for the week – you go and look for your own favourites:
BK Channels Regulate Spontaneous Action Potential Rhythmicity in the Suprachiasmatic Nucleus:

Circadian (~24 hr) rhythms are generated by the central pacemaker localized to the suprachiasmatic nucleus (SCN) of the hypothalamus. Although the basis for intrinsic rhythmicity is generally understood to rely on transcription factors encoded by “clock genes”, less is known about the daily regulation of SCN neuronal activity patterns that communicate a circadian time signal to downstream behaviors and physiological systems. Action potentials in the SCN are necessary for the circadian timing of behavior, and individual SCN neurons modulate their spontaneous firing rate (SFR) over the daily cycle, suggesting that the circadian patterning of neuronal activity is necessary for normal behavioral rhythm expression. The BK K+ channel plays an important role in suppressing spontaneous firing at night in SCN neurons. Deletion of the Kcnma1 gene, encoding the BK channel, causes degradation of circadian behavioral and physiological rhythms. To test the hypothesis that loss of robust behavioral rhythmicity in Kcnma1−/− mice is due to the disruption of SFR rhythms in the SCN, we used multi-electrode arrays to record extracellular action potentials from acute wild-type (WT) and Kcnma1−/− slices. Patterns of activity in the SCN were tracked simultaneously for up to 3 days, and the phase, period, and synchronization of SFR rhythms were examined. Loss of BK channels increased arrhythmicity but also altered the amplitude and period of rhythmic activity. Unexpectedly, Kcnma1−/− SCNs showed increased variability in the timing of the daily SFR peak. These results suggest that BK channels regulate multiple aspects of the circadian patterning of neuronal activity in the SCN. In addition, these data illustrate the characteristics of a disrupted SCN rhythm downstream of clock gene-mediated timekeeping and its relationship to behavioral rhythms.

The Role of Medical Language in Changing Public Perceptions of Illness:

This study was designed to investigate the impact of medical terminology on perceptions of disease. Specifically, we look at the changing public perceptions of newly medicalized disorders with accompanying newly medicalized terms (e.g. impotence has become erectile dysfunction disorder). Does using “medicalese” to label a recently medicalized disorder lead to a change in the perception of that condition? Undergraduate students (n = 52) rated either the medical or lay label for recently medicalized disorders (such as erectile dysfunction disorder vs. impotence) and established medical conditions (such as a myocardial infarction vs. heart attack) for their perceived seriousness, disease representativeness and prevalence. Students considered the medical label of the recently medicalized disease to be more serious (mean = 4.95 (SE = .27) vs. mean = 3.77 (SE = .24) on a ten point scale), more representative of a disease (mean = 2.47 (SE = .09) vs. mean = 1.83 (SE = .09) on a four point scale), and have lower prevalence (mean = 68 (SE = 12.6) vs. mean = 122 (SE = 18.1) out of 1,000) than the same disease described using common language. A similar pattern was not seen in the established medical conditions, even when controlled for severity. This study demonstrates that the use of medical language in communication can induce bias in perception; a simple switch in terminology results in a disease being perceived as more serious, more likely to be a disease, and more likely to be a rare condition. These findings regarding the conceptualization of disease have implications for many areas, including medical communication with the public, advertising, and public policy.

Bullying of Medical Students in Pakistan: A Cross-Sectional Questionnaire Survey:

Several studies from other countries have shown that bullying, harassment, abuse or belittlement are a regular phenomenon faced not only by medical students, but also junior doctors, doctors undertaking research and other healthcare professionals. While research has been carried out on bullying experienced by psychiatrists and psychiatry trainees in Pakistan no such research has been conducted on medical students in this country. We conducted a cross-sectional questionnaire survey on final year medical students in six medical colleges of Pakistan. The response rate was 63%. Fifty-two percent of respondents reported that they had faced bullying or harassment during their medical education, about 28% of them experiencing it once a month or even more frequently. The overwhelming form of bullying had been verbal abuse (57%), while consultants were the most frequent (46%) perpetrators. Students who were slightly older, males, those who reported that their medical college did not have a policy on bullying or harassment, and those who felt that adequate support was not in place at their medical college for bullied individuals, were significantly more likely to have experienced bullying. Bullying or harassment is faced by quite a large proportion of medical students in Pakistan. The most frequent perpetrators of this bullying are consultants. Adoption of a policy against bullying and harassment by medical colleges, and providing avenues of support for students who have been bullied may help reduce this phenomenon, as the presence of these two was associated with decreased likelihood of students reporting having being bullied.

Prefrontal Cortex Glutamate Correlates with Mental Perspective-Taking:

Dysfunctions in theory of mind and empathic abilities have been suggested as core symptoms in major psychiatric disorders including schizophrenia and autism. Since self monitoring, perspective taking and empathy have been linked to prefrontal (PFC) and anterior cingulate cortex (ACC) function, neurotransmitter variations in these areas may account for normal and pathological variations of these functions. Converging evidence indicates an essential role of glutamatergic neurotransmission in psychiatric diseases with pronounced deficits in empathy. However, the role of the glutamate system for different dimensions of empathy has not been investigated so far. Absolute concentrations of cerebral glutamate in the ACC, left dorsolateral PFC and left hippocampus were determined by 3-tesla proton magnetic resonance spectroscopy (1H-MRS) in 17 healthy individuals. Three dimensions of empathy were estimated by a self-rating questionnaire, the Interpersonal Reactivity Index (IRI). Linear regression analysis showed that dorsolateral PFC glutamate concentration was predicted by IRI factor “perspective taking” (T = −2.710, p = 0.018; adjusted alpha-level of 0.017, Bonferroni) but not by “empathic concern” or “personal distress”. No significant relationship between IRI subscores and the glutamate levels in the ACC or left hippocampus was detected. This is the first study to investigate the role of the glutamate system for dimensions of theory of mind and empathy. Results are in line with recent concepts that executive top-down control of behavior is mediated by prefrontal glutamatergic projections. This is a preliminary finding that needs a replication in an independent sample.

Bringing back the Quagga

For almost 20 years, The Quagga Project has been working on recreating this extinct species of zebra:

The Quagga Project was officially launched in South Africa in 1987,
with Reinhold Rau at its helm. It has the aim of recreating quagga by
selective breeding from plains zebra; ultimately returning quagga to the
wild. What makes this project so innovative and revolutionary is that
this is a simple, selective breeding programme over generations. There
is no genetic manipulation, and no cloning. It’s the only project of its
kind in the world.
“The important thing is that we’re not creating a new species,” says
Professor Eric Harley, an expert in conservation genetics at the University
of Cape Town, and an integral member of the Quagga Project. “You can’t
bring an animal back from extinction. It’s also important to point out that
the whole project has nothing to do with genetic engineering or genetic
manipulation. It’s purely a selective breeding programme.”
Genetic manipulation, such as with cloning, can only be undertaken with
live cells, so this was never an option for the quagga. The only reason that
quagga can be brought back to life, so to speak, is because it’s a subspecies
with similar genetic coding.

Now you can see a video of the most recent results here.

Inter-connectedness of science blogs

Euan analyzed connectivity of science blogs using their blogrolls, revealing a Big Head, a Skinny Neck and a Long Tail, as expected in every community. Linkfests, carnivals, aggregators, commenting on each other’s blogs, signing up for ResearchBlogging.org, showing up at meetups and conferences – all of these are methods for people to move from the end of the Long Tail into the neck and head.
Christina did something similar and her lecture on this will be live video streamed on Wednesday (Dec.10th) from 14:15 till 14:45 American Eastern Standard Time (EST).
This also depends on the definition of a “science blog” – I bet that subgroups tend to link to each other, e.g., medical blogs will mostly link to each other, nature blogs, lab-life blogs, women-in-science blogs, skeptical blogs, etc, would all link more within than between each other’s niche.

The Big Bang Theory – a new nerdy CBS show

From PopSci: Return of the (Televised) Nerds:

The show not only delivers a healthy dose of nerd-culture references, it also offers up some legitimate scientific content, something that’s pretty rare in mainstream television. How many TV nerds do you see engaging in real scientific banter? It’s more than the big words and convoluted sentence structure; the dialogue actually contains scientifically sound ideas.
UCLA Professor of Physics and Astronomy David Saltzberg is the science man behind the curtain, and many of the punchlines. He also writes equations on the set’s white boards. “Physicists love to nitpick, so for the 100 in the 10 million people who might watch the show, I try to get it as close to 100% accurate as I can,” Saltzberg commented in an interview with USA Today.

Networked Student

The Networked Student was inspired by CCK08, a Connectivism course offered by George Siemens and Stephen Downes during fall 2008. It depicts an actual project completed by Wendy Drexler’s high school students. The Networked Student concept map was inspired by Alec Couros’ Networked Teacher. I hope that teachers will use it to help their colleagues, parents, and students understand networked learning in the 21st century.

Related

Oscar Benton – Not the same dreams anymore – skating by Anissina & Peizerat (video)

My picks from ScienceDaily

Continue reading

Today’s carnivals

The Totally Hot December Scientiae is up on On Becoming a Domestic and Laboratory Goddess
Friday Ark #220 is up on Modulator
79th Carnival Of The Liberals is up on Capitol Annex

Clock Quotes

A poor surgeon hurts one person at a time. A poor teacher hurts thirty.
– Ernest Leroy Boyer

2008 Edublog Awards – time to vote

Nomination for 2008 Edublog Awards is now closed and you can now go and vote.
Go and check them all out – there are some great edublogs there I was not aware of from before. This is how I voted:
1. Best individual blog
Using Blogs in Science Education
2. Best group blog
360
3. Best new blog
Teaching in Second Life
4. Best resource sharing blog
Discovering Biology in a Digital World
5. Most influential blog post
THE MACGYVER PROJECT
6. Best teacher blog
Endless Forms Most Beautiful
7. Best librarian / library blog
Blue Skunk Blog
8. Best educational tech support blog
JoeWoodOnline
9. Best elearning / corporate education blog
Presentation Zen
10. Best educational use of audio
Project Xiphos
11. Best educational use of video / visual
Steve Spangler blog
12. Best educational wiki
Miss Baker’s Biology Class Wiki
13. Best educational use of a social networking service
Principles of Biology
14. Best educational use of a virtual world
Drexel Island on Second Life
15. Best class blog
Extreme Biology
16. Lifetime achievement
David Warlick
Now go and do the same thing – check them all out and vote for your picks.

The Millionth Comment Contest Winner has landed

Remember the Millionth Comment Contest? Remember that Peggy Kolm won it?
Well, she is in NYCity now on her winner’s trip and blogging about it. Stay tuned over there, as this is just the first of four days…

Interview with Judge Jones

Those interested in the struggles against infusion of Intelligent Design Creationism into public schools, have followed, with great interest, the highly publicized trial in Dover, PA a couple of years ago. At the end of it, Judge Jones not just made the right decision, but also wrote one of the best and most scathing indictments of IDC in our legal history. So, you may be interested in the latest interview with Judge Jones, just published in PLoS Genetics:
Taken to School: An Interview with the Honorable Judge John E. Jones, III:

“My call to the Judge’s chambers in request for an interview was answered in vivo by his assistant, who suggested simply e-mailing the Judge directly. I did, and back came an immediate reply of “Happy to do it.” On the appointed July day, in near 100-degree heat, I drove from my father’s home in Pottstown along country roads through the corn-laden, cow-dotted agricultural landscape that I love. But as I got closer to my destination, the state capital of Harrisburg, billboard outcroppings disrupted the fields’ quiet beauty with warnings such as, “It’s your choice – heaven or hell.” It appeared that I had arrived at the crux of the matter.”

If you blog about it, please, if your software allows it, send a trackback.

New and Exciting in PLoS ONE

There are 12 new articles in PLoS ONE today. As always, you should rate the articles, post notes and comments and send trackbacks when you blog about the papers. You can now also easily place articles on various social services (CiteULike, Connotea, Stumbleupon, Facebook and Digg) with just one click. Here are my own picks for the week – you go and look for your own favourites:

Continue reading

One of the rare people capable of singing oneself to tears


Marie Laforet….

Today’s carnivals

Carnival of Evolution #6 is up on Observations Of A Nerd
Mendel’s Garden #26 is up on A Free Man
Skeptics’ Circle 101: The African Edition, is up on Ionian Enchantment

My picks from ScienceDaily

Continue reading

Clock Quotes

There is no royal road to anything. One thing at a time, all things in succession. That which grows fast, withers as rapidly. That which grows slowly, endures.
– Josiah Gilbert Holland

New and Exciting in PLoS ONE

There are 14 new articles in PLoS ONE today. As always, you should rate the articles, post notes and comments and send trackbacks when you blog about the papers. You can now also easily place articles on various social services (CiteULike, Connotea, Stumbleupon, Facebook and Digg) with just one click. Here are my own picks for the week – you go and look for your own favourites:

Continue reading

ScienceOnline09 on Radio In Vivo

scienceonline09.jpg
As you know, Anton Zuiker, David Kroll and I were on the radio earlier today, chatting for an hour with Ernie Hood of Radio In Vivo, here in Carrboro.
We discussed science communication, education, publishing, blogging, popularization, journalism, social networking, Second Life, etc. The focus was on ScienceOnline09, but we also mentioned The Open Laboratory anthologies (2006, 2007 and 2008), LabLit.com, the NCCU BRITE, Duke Health, Inside Duke Medicine, PLoS, BlogTogether, SCONC and, of course, our blogs.
Try to find an hour of peace and quiet and listen to the show here (mp3).
And then check out the podcasts of the old Radio In Vivo science shows – there are some excellent previous shows with great scientists.

Update:
David took some pictures – you can see them here.

Landing in San Francisco – view from the Cockpit of a 747 (video)

I landed in SF twice (it’s a great visual spectacle approaching the Bay), but I had no idea what was going on in front of me, in the cockpit:

Five-Fiftysix meme – solutions to the puzzle

I promised solutions in 24 hours, and it’s been a little more than that now, so here are the sources:

1. I suppose that the mere fact that I was in the company of two friends itself proves that I wasn’t actually some kind of hermit when it came to my rat studies.

Rats by Robert Sullivan (not a blogger, as far as I know)

2. They’re screwing the security guards in the bathroom.

The Wisdom of Whores by Elizabeth Pisani

3. By the end of the nineteenth century, organic synthesis was widely accepted and the vital force theory was abandoned.

Tomorrow’s Table by Pamela Ronald

4. Cyanobacteria actually can tell time using a mechanism similar to our circadian clock, from the Latin meaning “about a day”.

The Carbon Age by Eric Roston

5. Half blind, I picked myself up and ran and ran and ran.

It’s Every Monkey For Themselves by Vanessa Woods

6. The idea that the transmission of news via paper might become a bad idea, that all those huge, noisy printing presses might be like steam engines in the age of internal combustion, was almost impossible to grasp.

The Revolution Will Not Be Televised by Joe Trippi

7. Born in 1769, the twenty-year-old seminary student had weathered the French revolution by working at the Jardin des Plantes in Paris with the dashing eccentric zoological genius Etienne Geoffroy Saint-Hillaire.

Siege of Stars by Henry Gee

8. Males place packets of sperm everywhere on the female’s head or tentacles.

Dr. Tatiana’s Sex Advice to All Creation by Olivia Judson

9. Escoffier begins with the browning of beef and veal bones in the oven.

Proust Was a Neuroscientist by Jonah Lehrer

10. The bourgeoisie, during its rule of scarce one hundred years, has created more massive and more colossal productive forces than have all preceding generations together.

The Communist Manifesto by Karl Marx and Frederick Engels, who, I think, are not bloggers….

Today’s carnivals

BONEYARD #26: “My Favourite Museum” – is up on Traumador the Tyrannosaur
Carnival of the Blue #19 is up on WaterNotes
December 2008 History Carnival is up on Frog in a Well
The 54th issue of the Four Stone Hearth Anthropology Blog Carnival is up on Cognition and Culture
The 153rd Carnival of Homeschooling is up on Po Moyemu–In My Opinion

Reminder….

Tune in if you can, or listen online later…

My picks from ScienceDaily

Continue reading

Clock Quotes

Don’t limit a child to your own learning, for he was born in another time.
– Rabbinic Saying

New and Exciting in PLoS ONE

There are 10 new articles in PLoS ONE today. As always, you should rate the articles, post notes and comments and send trackbacks when you blog about the papers. You can now also easily place articles on various social services (CiteULike, Connotea, Stumbleupon, Facebook and Digg) with just one click. Here are my own picks for the week – you go and look for your own favourites:
If I Were You: Perceptual Illusion of Body Swapping:

The concept of an individual swapping his or her body with that of another person has captured the imagination of writers and artists for decades. Although this topic has not been the subject of investigation in science, it exemplifies the fundamental question of why we have an ongoing experience of being located inside our bodies. Here we report a perceptual illusion of body-swapping that addresses directly this issue. Manipulation of the visual perspective, in combination with the receipt of correlated multisensory information from the body was sufficient to trigger the illusion that another person’s body or an artificial body was one’s own. This effect was so strong that people could experience being in another person’s body when facing their own body and shaking hands with it. Our results are of fundamental importance because they identify the perceptual processes that produce the feeling of ownership of one’s body.

The Evolution of Invasiveness in Garden Ants:

It is unclear why some species become successful invaders whilst others fail, and whether invasive success depends on pre-adaptations already present in the native range or on characters evolving de-novo after introduction. Ants are among the worst invasive pests, with Lasius neglectus and its rapid spread through Europe and Asia as the most recent example of a pest ant that may become a global problem. Here, we present the first integrated study on behavior, morphology, population genetics, chemical recognition and parasite load of L. neglectus and its non-invasive sister species L. turcicus. We find that L. neglectus expresses the same supercolonial syndrome as other invasive ants, a social system that is characterized by mating without dispersal and large networks of cooperating nests rather than smaller mutually hostile colonies. We conclude that the invasive success of L. neglectus relies on a combination of parasite-release following introduction and pre-adaptations in mating system, body-size, queen number and recognition efficiency that evolved long before introduction. Our results challenge the notion that supercolonial organization is an inevitable consequence of low genetic variation for chemical recognition cues in small invasive founder populations. We infer that low variation and limited volatility in cuticular hydrocarbon profiles already existed in the native range in combination with low dispersal and a highly viscous population structure. Human transport to relatively disturbed urban areas thus became the decisive factor to induce parasite release, a well established general promoter of invasiveness in non-social animals and plants, but understudied in invasive social insects.

Five-Fiftysix meme

It started with Henry who was bored with the simplicity of the “pick the nearest book” meme and decided to make it really hard!
Mike picked it up and tagged a few people, including me and Wilkins.
So, what are the rules? Hey, Henry came up with this, so feel free to make the rules as you go. After all, what’s he gonna do – release calcium from intracellular stores?
OK, pick not one but TEN books. They don’t need to be the closest to you – take your time and make good picks. It’s not easy – you want people to work hard, but still figure out the sources eventually. Goldilocks Principle applies – not too obvious, not too obscure. Or whatever you prefer – make it easy so everyone can have fun, or make it so darned hard nobody gets it and you can gloat about your sophistication!
The unalterable rule: take ten books, and transcribe the fifth sentence from page fifty six.
If you want, you can have five of them be fiction, but you can change that as well.
If you want, you can provide hints, but you don’t have to.
Then tag six people, or some other number (including zero) as you wish. As Wilkins notes, memes are supposed to mutate and evolve, so don’t be a stickler for the rules. Just have fun!
OK – here are my ten:
1. I suppose that the mere fact that I was in the company of two friends itself proves that I wasn’t actually some kind of hermit when it came to my rat studies.
2. They’re screwing the security guards in the bathroom.
3. By the end of the nineteenth century, organic synthesis was widely accepted and the vital force theory was abandoned.
4. Cyanobacteria actually can tell time using a mechanism similar to our circadian clock, from the Latin meaning “about a day”.
5. Half blind, I picked myself up and ran and ran and ran.
6. The idea that the transmission of news via paper might become a bad idea, that all those huge, noisy printing presses might be like steam engines in the age of internal combustion, was almost impossible to grasp.
7. Born in 1769, the twenty-year-old seminary student had weathered the French revolution by working at the Jardin des Plantes in Paris with the dashing eccentric zoological genius Etienne Geoffroy Saint-Hillaire.
8. Males place packets of sperm everywhere on the female’s head or tentacles.
9. Escoffier begins with the browning of beef and veal bones in the oven.
10. The bourgeoisie, during its rule of scarce one hundred years, has created more massive and more colossal productive forces than have all preceding generations together.
Hints: 8 of the 10 authors also write blogs.
I tag:
John McKay
Peggy Kolm
Tom Levenson
Dr.Isis
Carl Zimmer
Brian Switek
Honor system – refrain from Google for 24 hours. Post your best guesses in the comments. I will post the solutions to the riddle in 24 hours in the comments here.

My picks from ScienceDaily

Continue reading

Clock Quotes

A timid person is frightened before a danger, a coward during the time, and a courageous person afterward.
– Jean Paul Richter

The Open Laboratory 2008 – all the submissions fit to print

It’s midnight! So, the submission form is now closed.
Over the past year we have collected hundreds of excellent entries for the anthology – thanks to all who made the submissions.
Jennifer Rohn has lined up some star people to judge all the entries, and in the end, we’ll have the best 50 (plus a poem and a cartoon/image) published in a book with Lulu.com. We will announce the winners in a couple of weeks or so, but in the meantime, bookmark this post – this is the best of science blogging for the year!
And if the winter break is long enough for you to read all of these entries and still crave more – you can read the The Open Laboratory: The Best Writing on Science Blogs 2006 and The Open Laboratory: The Best Science Writing on Blogs 2007 all over again. We are hoping to have the book out and ready for sale before the ScienceOnline09 so we can sell some copies right then and there.
So, here are ALL the entries for The Open Laboratory 2008:
==================================
49 percent: Textbooks and reproduction– why they gotta embellish?
49 percent: *groan*
49 percent: She said to no one in particular
A Blog Around the Clock: The Nobel Prize conundrum
A Blog Around The Clock: Science vs. Britney Spears
A Blog Around The Clock: Domestication – it’s a matter of time (always is for me, that’s my ‘hammer’ for all nails)
A Blog Around The Clock: Scientists are Excellent Communicators (‘Sizzle’ follow-up)
A Blog Around The Clock: Why do earthworms come up to the surface after the rain?
A Blog Around The Clock: Clock Classics: It all started with the plants
A Blog Around The Clock: The Future is Here and it is Bright: Interview with Anne-Marie Hodge
A canna’ change the laws of physics: Expect The Unexpected
A canna’ change the laws of physics: Lost In Translation? Part I: What Is Incommensurability And Why Should I Care?
A canna’ change the laws of physics: Lost In Translation? Part II: Kuhnian Incommensurability
A Developing Passion: Wunderpus photogenicus!
A Developing Passion: Realize your potential!
A Free Man: Weird Fishes and the Origin of Fingers
A Free Man: Science Tuesday: The MMR vaccine and autism – truth, lies and the media
A Free Man: Science Tuesday: Breath-taking insanity
A Free Man: Science Tuesday: Transatlantic STDs
A Free Man: Science Tuesday: In Response to an Animal Rights Apologist
A k8, a cat, a mission: Providing and nurturing
A k8, a cat, a mission: We can count on each other
A k8, a cat, a mission: Open Access Day
A Mad Tea-Party: Birds of a feather?
A Mad Tea-Party: Bigfoot, Nessie, and the 40-hour Work Week
A Mad Tea-Party: Swimming With The Big Kids
A Meandering Scholar: Braindrain
A Somewhat Old, But Capacious Handbag: Maladaptation
Aardvarchaeology: The Strange Fate of the First Christian Burials on Gotland
Aardvarchaeology: Investigating the Field of Saint Olaf
Adventures in Applied Math: Things I Love about My Job
Adventures in Applied Math: Game Theory and Human Behavior, Part I
Adventures in Applied Math: Game Theory and Human Behavior, Part II
Adventures in Ethics and Science: Girls, boys, and Math
Adventures in Ethics and Science: Research with vulnerable populations: considering the Bucharest Early Intervention Project (part 1).
Adventures in Ethics and Science: Research with vulnerable populations: considering the Bucharest Early Intervention Project (part 2).
Adventures in Ethics and Science: The Hellinga Retractions (part 1): when replication fails, what should happen next?
Adventures in Ethics and Science: The Hellinga retractions (part 2): trust, accountability, collaborations, and training relationships.
Aetiology: What’s it like to work an Ebola outbreak?
Aetiology: Where did syphilis come from?
All My Faults are Stress-Related: Data, Interpretations and Field Work
All My Faults are Stress-Related: Analogies, analog modeling, and squashed chocolate
Almost Diamonds: Diversity Now
Amphidrome: Crabs and Barnacles of the Texas Panhandle
Antimatter: The Big Bang and the Mind of God
Antimatter: Hamilton and maths week in Ireland
Antimatter: Zeilinger in Ireland
Antimatter: Town, gown and college life
Antimatter: Standard Model at Trinity College
Antimatter: LHC: Hawking v Higgs
Antimatter: Science week, Walton and the LHC
Antimatter: Do anti-depressants work?
Antimatter: The Standard Model
Antimatter: Supersymmetry
Antimatter: Cambridge conference review
Antimatter: Hubble puzzle
Antimatter: Hubble solution
Antimatter: The Denial of Global Warming
Archaeoastronomy: A Sapphic Ode to Pan scientiae
Archaeoporn: Moral Dilemas in Teaching Anthropology
Archaeoporn:
A Reivew of Methodology in ‘Biblical Entheogens’

Archaeoporn: Discovery Channel, Teaching the Debate
Archaeoporn: Muslim Sailors, A Skeptical Redux
Archy: A Century of Tunguska
Archy: On Planets X and Names
Backreaction: We have only ourselves to judge on each other
Backreaction: Blaise Pascal, Florin Perier, and the Puy de Dome experiment
Backreaction: The Equivalence Principle
Backreaction: The Spirits that We Called
Backyard Arthropod Project: Snow Fly – Chionea valga
Backyard Arthropod Project: Carpet Beetle Larva
Bad Astronomy: Is science faith-based?
Bad Astronomy: WR 104: A nearby gamma-ray burst?
Bad Astronomy: Vaccines do not cause autism!
Bayblab: Fact or Fiction: Tryptophan Turkey Sleep
Bayblab: A History of Beardism and the Science that Backs It
Biocurious: We need to stop pigeon-holing science
BioJobBlog: Academia: A Feudal System That Is Running on Empty
Biological Ramblings: New species in 2008
Biological Ramblings: Avian relationships – What do we know?
Blind.Scientist: How to improve scientific software?
Blogfish: Saving the ocean with guilt or desire?
Blogging the PhD: Multidiscipline
Bootstrap Analysis: Malnourished waterfowl dying in Michigan-Ontario
Boston blog: What is fair play in the blogo/commentosphere?
BrainBlogger: The Human Injury of Lost Objectivity
Brontossauros em meu Jardim: Personal Genomes will be the new horoscope
Bug Girl’s Blog: Do those mosquito zapper things really work?
Bug Girl’s Blog: Pubic Lice: ‘Sea monkeys in your pants’
Building confidence: Big data: an informaticians best friend
Building confidence: We need to create a market for genetic-association data
Cabinet of Wonders: A Rule of Thumb
Carbon Nation: The Giant’s Shoulders: Edwin Salpeter edition
Catalogue of Organisms: The Strangest of Spiders
Catalogue of Organisms: The Origins of Flowers
Catalogue of Organisms: Conversations with Cothurnocystis
Catalogue of Organisms: Are You Sucking on a Lemon or a Lime?
Catalogue of Organisms: Eating Mum from the Inside Out
Charles Darwin’s blog: If only I’d had a magic results machine in 1836…
Charles Darwin’s Blog: Someone should invent a device to look at the micro world
Chem-bla-ics: Open{Data|Source|Standards} is not enough: we need Open Projects
Clastic Detritus: Petroleum Resources and the Outer Continental Shelf (OCS)
Cocktail Party Physics: tit for tat
Cocktail Party Physics: hot capillary action
Coding Horror: How Should We Teach Computer Science?
Coding Horror: The Years of Experience Myth
Coding Horror: I Repeat: Do Not Listen to Your Users
Coding Horror: Designing For Evil
Coding Horror: The Greatest Invention in Computer Science
Coffee & Conservation: Know your coffee birds: Jacu
Coffee Talk: What motherhood has taught me
Cognitive Daily: Changing belief in free will can cause students to cheat
Cognitive Daily: How to make your eye feel like it’s closed, when it’s actually open
Cognitive Daily: Will video games solve sex-discrimination in science?
Cognitive Daily: Toddlers play with impossibly small toys as if they’re the real thing
Cognitive Daily: The origins of the study of memory
Cognitive Daily: A baby’s psychological development at age 6 months
Cosmic Variance: The First Quantum Cosmologist
Cosmic Variance: Dark Photons
Cosmic Variance: The Physics of Chocolate
DamnGoodTechnician: Why I’m a tech
Dara Sosulski’s blog: Quantum Keats
Denialism blog: My New Product: All Natural Pb
Denialism blog: Why good medicine requires materialism
Denialism blog: There is no such thing as alternative medicine
Denialism blog: I’m a holistic doctor
Denialism blog: Were the ancients fools?
Denialism blog: Fountain pens
Denialism blog: Try and beat this one, alties!
Dear Blue Lobster: Bloop: A Crustacean Phenomenon?
Deep Sea News: Mommy, Where Do Dwarf Male Harems Come From?
Deep Sea News: The Big 3: Shrimp, Tuna, and Salmon
Deep Sea News: Dumping Pharmaceutical Waste In The Deep Sea
Deep Sea News: You Should Fear and Respect the Radula
Deep Sea News: An Update On Nautilus Mining
Deep Sea News: Does Lightning Kill Marine Animals?
Deep Sea News: Hydromedusa Mounts Ninja Style Invasion
Deep Thoughts and Silliness: The Hierarchical Structure of Bad Writing
Deep Thoughts and Silliness: The Deeper Meaning of a Residual Plot
Digital Cuttlefish: Danger! Warning!
Digital Cuttlefish: The singularity can’t come soon enough
Digital Cuttlefish: The Evolutionary Biology Valentine’s Day Poem
Digital Cuttlefish: Apology 130 to William Shakespeare
Digital Cuttlefish: I Am The Very Model Of A Devious Creationist
Digital Cuttlefish: How Chromosome Numbers Change
Digital Cuttlefish: Oh Ye Of Little Faith
Digital Cuttlefish: I Am Charles Darwin
Dreams and hopes of a (post doc) scientist: Why I (shouldn’t) don’t tell too many people what I (really) do
Dreams and hopes of a (post doc) scientist: TLR, PPR, cytokines and signaling
Dr. Jekyll & Mrs. Hyde: Why I blog….
Dr. Mom, My Adventures as a Mommy-Scientist: The Long and Winding Road
Dr Petra’s blog: Well, you can tell by the way I use my walk I’m a vaginal orgasm woman, no time to talk
Dr Petra’s blog: Superdrug and sex supplements – should you take Viapro?
Dr Petra’s blog: How latest UK trafficking statistics don’t quite add up
Dr Petra’s blog: Ooh! Ooh! Ooh! Watch the media get into a feeding frenzy over the latest g-spot research
DrugMonkey (PhysioProf): Academic Science: Not A Care Bears Fucking Tea Party
DrugMonkey (PhysioProf): Why Comrade PhysioProf Loves Teaching Medical Physiology
DrugMonkey (DrugMonkey): Most Scientists are Perfectly Happy Not Publishing in GlamourMagz
DrugMonkey (DrugMonkey): It Doesn’t Hurt a Bit to Be ‘That Guy’
Dynamic Earth: Expanding Earth and the Conspiracy of Science
Dynamics of Cats: Physics Made Magical
Earth Impacts: Home Climate
Earth Impacts: Your Radioactive Kitchen
Earth Impacts: Stop Illegal Climate Immigration
Ed Boyden’s Blog: Research as a Community-Building Activity
evolgen: The Probability of Winning the NBA Draft Lottery
Effect Measure: More on the human trials of a ‘universal’ flu vaccine
Effect Measure: Important new flu paper in Cell: part I
Effect Measure: Important new flu paper in Cell: part II
Effect Measure: Important new flu paper in Cell: part III
Effect Measure: What killed people in the 1918 flu?
Effect Measure: The problem of testing the effectiveness of bird flu vaccines
Effect Measure: Why fever screening at airports is unlikely to work
Effect Measure: Why the Right Wing attacks science
eTrilobite: Walcott’s Quarry #28: Council of Hallucigenia (cartoon)
evolgen: How many genes do you share with your twentieth cousin?
Evolutionary Novelties: Gould: Pluralism by monism
Evolutionblog: Report on the Sixth International Conference on Creationism, Part One
Evolutionblog: Report on the Sixth International Conference on Creationism, Part II
Evolutionblog: Report on the Sixth International Conference on Creationism, Part Three
Evolutionblog: Report on the Sixth International Conference on Creationism, Part Four
Evolutionblog: Report on the Sixth International Conference on Creationism, Conclusion
Evolving Thoughts: Darwin, God and chance
Evolving Thoughts: Fallacies on Fallacies
Evolving Thoughts: Aristotle on the mayfly
Evolving Thoughts: On Ontology and Metaphysics: Substance Abuse
Expression Patterns: What will you be?
Expression Patterns: Last Saturday
Expression Patterns: This is my brain on grad school
Expression Patterns: How to get scientists to adopt web 2.0 technologies
Extreme Biology: Humorless Homework
FairerScience: Sid the Science Kid: A Review
Female Science Professor: Journal Matchmaking
FemaleScienceProfessor: The Best Woman
Fine Structure: Parton Distribution Functions
Freelancing science: Freelancing science – today and tomorrow
Freelancing science: By any measure I’m average at most
Further thoughts: Disturbance and recovery in tropical dry forests
Further thoughts: Rethinking the way we study ecological succession
Further thoughts: What is natural? Reinterpreting rivers in the eastern US
Further thoughts: Teaching undergrads how to use online literature
Further thoughts: Bt cotton and the evolution of resistance
Giovanna Di Sauro’s blog: Who’s afraid of Bisphenol A? (part 1)
Giovanna Di Sauro’s blog: Who’s afraid of Bisphenol A? (part 2)
Good Math, Bad Math: The Genius of Donald Knuth: Typesetting with Boxes and Glue
Green Gabbro: The Igneous Petrology of Ice Cream
Green Gabbro: The Metamorphic Petrology of Ice Cream
Green Gabbro: The Sedimentary Geology of Ice Cream
Greg Laden’s Blog: Cultural Evolution from Mosquitos to Worm Grunting
Greg Laden’s blog: Size and Scaling in Hominid Evolution
Greg Laden’s blog: Stone Age Graveyard Reveals Lifestyles of a Green Sahara
Greg Laden’s blog: The Scientific, Political, Social, and Pedagogical Context for the claim that ‘Race does not exist.’
Greg Laden’s blog: The Political Gender Gap
Guadalupe Storm-Petrel: To Equine Things There is a Season (guest post by Barn Owl)
Guadalupe Storm-Petrel: Otocephaly in the Guinea Pig
Guadalupe Storm-Petrel: Earliest Axons in the Early Bird Embryo
GumbyTheCat: The Texas Two-Step
GumbyTheCat: An Open Letter To Creationists
Highly Allochthonous: Where the Earth’s magnetic field comes from
Highly Allochthonous: Active, dormant, and extinct volcanoes
Hope for Pandora: Dear Reviewer
Huckleberry Days: What’s flowering in the Delta this week: wild morning-glory
Humans in Science: National Science Policies – Upheaval in France
Humans in Science: Green tea shenanigans
Hypo-theses: Geology and Beer
Ilovebacteria.com blog: Evolution isn’t perfect…
Isis the Scientist: Isis’s Super Family Fun Day
It’s a Micro World after all: Primum non nocere – Part I
It’s a Micro World after all: Celebrity Death Match – Biodiesel vs. Bioethanol (Part I)
It’s a Micro World after all: Celebrity Death Match – Biodiesel vs Bioethanol (Part II)
It’s a Micro World after all: Bacterial Farts – Part Deux
I was lost but now I live here: Departmental retreats: academia with a twist of karaoke
I was lost but now I live here: The future of science, gradical change, and tools for the people
Jacks of Science: Using Adobe Photoshop for Research and Profit
Jacks of Science: White Stuff and Black Stuff That People Like
Joel on Software: Architecture astronauts take over
Juniorprof: Why I support open access
Juniorprof: Postdoc to PI transition
Knowing and Doing: No One Programs Any More
Knowing and Doing: Scripting Languages, Software Development, and Novice Programmers
Knowing and Doing: Math and Computing as Art
Laelaps: Reaction to Darwin’s Descent
Laelaps: Geese from barnacles
Laelaps: Thomas Jefferson’s All-American incognitum
Laelaps: Wallowing dinosaurs and birds on the 5th day
Laelaps: The life, and death, of Ota Benga
Laelaps: John Daniel, the civilized gorilla
Laelaps: Evolutionary Phreno-Geology
Laelaps: Who scribbled all over Darwin’s work?
Lecturer Notes: Getting Anyone to expand their horizons is hard
Life, Birds, and Everything: Do we see what bees see?
Life of a Lab Rat: Squeeze Me
Living the Scientific Life (Scientist, Interrupted): Northeastern Bats Mysteriously Dying in the Thousands
Living the Scientific Life (Scientist, Interrupted): There Are More Giraffe Species Than You Think
Living the Scientific Life (Scientist, Interrupted): Audubon’s Aviary: Portraits of Endangered Species
Living the Scientific Life (Scientist, Interrupted): America’s Food Availability Crisis
Living the Scientific Life (Scientist, Interrupted): Science Blogging for Scientists: Planting the Seed
Living the Scientific Life (Scientist, Interrupted): Lovebird Behavior: Nature or Nurture?
Lunartalks: The Gordian Worm (or what Gordon Brown is doing to Britain).
Mad Scientist, Jr.: Brain Extractions
Magma Cum Laude: Cenozoic magmatism and the subduction of the Farallon Slab
Mario’s Entangled Bank: The Year of Evolution in the age of Open Access
Marmorkrebs: How Marmorkrebs can make the world a better place
Michael Nielsen’s Blog: The Future of Science
Michael Nielsen’s Blog: Open science
Michael Nielsen’s Blog: Why the world needs quantum mechanics
Michael Nielsen’s Blog: Quantum computing for everyone
Microecos: Dust. Wind. Dude. Or, the comparative social phenology of Girls Gone Wild and Socrates
Mild Opinons: Ideal free ducks
Mindshavings: The Impossible Lamp
Mind the Gap: In which two dreams and an episode of CSI change the course of history
Mind the Gap: In which my dreams come true
Mind the Gap: In which we retreat
Mind the Gap: In which words stick
Mind the Gap: In which science becomes a sport – hypothetically speaking
Mind The Gap: In which work follows me on holiday
Mind the Gap: In which I am star-struck by the invisible world
Mindshavings: Further Recursion Excursion
Minor Revisions: To Whom it May Concern
My Favourite Places: Pepijn’s Livingroom Urban Research Program (PLURP)
Nano2Hybrids: Girly Girls in Science
Nano2Hybrids: Ethical Scientist Code
Nano2Hybrids: What IS a carbon nanotube?
Neuroanthropology: Poverty Poisons the Brain
Neuroanthropology: Girls closing math gap?: Troubles with intelligence #1
Neuroanthropology: Studying Sin
Neuroanthropology: Cultural Aspects of Post-Traumatic Stress Disorder: Thinking on Meaning and Risk
NeuroDojo: Making mimetics scientific
Neurophilosophy: Wilder Penfield: Neural Cartographer
Neurotic Physiology: Uber Coca, by Sigmund Freud
Neurotic Physiology: Passage of an Iron Rod through the Head
Neurotic Physiology: Diabetes Insipidus as a Sequel to a Gunshot Wound of the Head
Neurotic Physiology: Broca’s Area, 1865
Neurotic Physiology: Weird Science Friday REDUX
Neurotopia 2.0: An Essay on the Shaking Palsy
Neurotopia 2.0: Warm fuzzies and getting to know your profs
Neurotopia 2.0: Birds of a Feather in Academia
NoR: Feature Creep I
Not Exactly Rocket Science: Scientists heart journalists? Plus a quick guide to dealing with the media
Not Exactly Rocket Science: Space Invader DNA jumped across mammalian genomes
Nothing’s Shocking: The laboratory isn’t a safe place for experiments anymore
Nothing’s Shocking: Poster session paparazzi
NOVA Geoblog: Perspectives on coastal tectonics
Observations of a Nerd: Having Some Fun With Evolution
Observations of a Nerd: Religion v. Science: the fallacy of Intelligent Design
Of Two Minds: How to Sex a Chick
On Becoming a Domestic and Laboratory Goddess: Where Dr. Isis Tells the Students to Sack Up….
One Big Lab: Envisioning the scientific community as One Big Lab
Open Reading Frame: An Open Access partisan’s view of ‘Electronic Publication and the Narrowing of Science and Scholarship’
O’Really?: Famous for fifteen people
O’Really?: If Science was an Olympic Sport…
Ouroboros: The evolution of negligible senescence
Over Land, Under Sea: Ode to a Horseshoe Crab
Panda’s Thumb: Choosey Peahens Choose Evolution
Panda’s Thumb: ID: Intelligent Design as Imitatio Dei (report on the 2007 ‘Wistar Retrospective Symposium’)
Panda’s Thumb: A Follow-Up on Evolution and Thermodynamics
Panda’s Thumb: Scientific Vacuity of ID: Lactose Digestion in E. coli
Panthera studentessa: What ecology is NOT
Partially Attended: Why the LHC is not really that impressive
Pharyngula: Old scientists never clean out their refrigerators
Pharyngula: Snake segmentation
Pharyngula: Evolving snake fangs
Pharyngula: Epigenetics
Pharyngula: Amphioxus and the evolution of the chordate genome
Pharyngula: Reproductive history writ in the genome
Pharyngula: Plant and animal development compared
Pharyngula: Where do the hagfish fit in?
Pharyngula: Reprogramming the pancreas
Pharyngula: Basics: Sonic Hedgehog
Pharyngula: My connection to Sonic Hedgehog
Physiology physics woven fine: Neural Networking, Alzheimer’s Disease and Memory Share a Few Things
Plus magazine – news from the world of maths: United Kingdom – Nil Points
Podblack Blog: The Specialness Of Species
Podblack Blog: Looking Good – Scientifically
Podblack Blog: Smart Bitches, Not Meerly Sex
Podblack Blog: She’s Already Got Science – Women, Skepticism And The Need For More Research
Podblack Blog: Political Punditry on McCain’s Magical Thinking
Podblack Blog: The Sarah Silverman Of Skepticism
Podblack Blog: Classic Science Paper: Belief in Fortune Telling Amongst College Students
Podblack Blog: Political Punditry on McCain’s Magical Thinking
Podblack Blog: Women and Superstitions – Part One
Podblack Blog: Women and Superstitions – Part Two
Podblack Blog: Women and Superstitions – Part Three
Podblack Blog: Women and Superstitions – Part Four
Podblack Blog: ‘Tis the Season For Superstition
Podblack Blog: Are U(FO) Dreaming Of A Paranormal Christmas?
Pondering Pikaia: Social Clocks: How do cave bats know when it is dark outside?
Potspoon!: The New Environmentally-Friendly (?!?!) Plastic
Prairie Mary: Religion for Scientists
Principles of Neurobiotaxis: The evolution and evolvability of modularity in the brain
Professor Douglas Kell’s blog: To blogin at the bloginning
Providentia: Dr. Fliess’ Patient
Public Rambling: Post-publication journals
Quintessence of Dust: Finches, bah! What about Darwin’s tomatoes?
Rants of a Feminist Engineer: Stories of an academic panel discussion
Reciprocal Space: I hate blogs, bloggers and blogging
Reciprocal Space: The battle for my eternal soul
Reciprocal Space: I depend on the kindness of strangers
Reciprocal Space: I get my kicks from thermodynamicks!
rENNISance woman: Nobody expects…
rENNISance woman: My first Nature paper
rENNISance woman: Submit your neologisms here
Rubor Dolor Calor Tumor: Calor?
Sauropod Vertebra Picture of the Week: Sauropod pneumaticity, the early years
Science After Sunclipse: The Necessity of Mathematics
Science After Sunclipse: Physics Makes a Toy of the Brain
Science After Sunclipse: An Alloy of Pleasures
Science After Sunclipse: Curently Reading: Just Add Exploding Spaceship Edition
Science After Sunclipse: The EmDrive Story, or How to Propel Pseudoscience
Science After Sunclipse: Dawkins and the D-Word
Science After Sunclipse: Cinematic Combinatorics
Science After Sunclipse: Reverse the Baryon Flux Polarity!
Sciencebase Science Blog: Dark Energy
Science behind the scenes: Time to come home, love…
Science behind the scenes: From the Antarctic to biofueling America – Marc Pomeroy
Science behind the scenes: Cam and Kinari Webb
Science Blog: Modern Cosmology
Science in the open: Avoid the pain and embarassment – make all the raw data available
Science in the open: How I got into open science – a tale of opportunism and serendipity
Sciencewomen: Prioritizing research time
Sciencewomen: A reckless proposal, or ‘Scientists are people too, and it’s time we started treating them that way.’
Sciencewomen: Academic foolishness
Sciencewomen: Ask a ScienceBlogger: Why do I blog?
Sciencewomen: Engineer, thy name is enlightenment hero
Sciencewomen: What will academia (need to) look like when gas is $20/gallon?
Sciphu: The Swedish Chlamydia Mystery
See Jane Compute: The care and feeding of research students
Skulls in the Stars: The gallery of failed atomic models, 1903-1913
Skulls in the Stars: What a drag: Arago’s Experiment (1810)
Skulls in the Stars: ‘Interference between different photons never occurs:’ Not! (1963)
Skulls in the Stars: The discovery, rediscovery, and re-rediscovery of computed tomography
Stop Procrastinating: You Can All Sleep Sound Tonight
Stripped Science: Last question (comic strip)
Stripped Science: The Nobel Prize in Chemistry 2008 (comic strip)
Swans on Tea: ‘Classic’ Timekeeping, Part I
Swans on Tea: ‘Classic’ Timekeeping, Part II
Swans on Tea: ‘Classic’ Timekeeping, Part III
Swans on Tea: Optipessimism
Tangled Up in Blue Guy: Respect Astrology
Tangled Up in Blue Guy: One Gene, One Trait? (Part 1 in a series)
Tangled Up in Blue Guy: One Gene, One Trait? (Part 2)
Tangled Up in Blue Guy: One Gene, One Trait? (Part 3)
Terra Sigilatta: Liveblogging the Vasectomy Chronicles
Terra Sigilatta: Is organic chemistry still relevant in the pre-medical curriculum?
Tetrapod Zoology: Sleep behaviour and sleep postures
The Beagle Project Blog: Genomics and plant evolution: blogging on my own peer reviewed research
The Beagle Project Blog: Detecting natural selection: a pika’s tale
The Beagle Project Blog: Saving Darwin’s muse
The Beagle Project Blog: A guest post by Wallace’s Rottweiler on the 150th anniversary of natural selection.
The Beagle Project Blog: Would that which we call a rose, by a DNA barcode, smell as sweet?
The Bean Chronicles: At home again
The Big Room: A small modification of Koch’s plating method
The Daily Transcript: From Metabolism to Oncogenes and Back – Part I
The Daily Transcript: From Metabolism to Oncogenes and Back – Part II
The Daily Transcript: From Metabolism to Oncogenes and Back – Part III
The Dragon’s Tales: Once Upon the Permian: Gazes of Fear
The Dragon’s Tales: Once Upon the Permian: Beaked Bites of a Lost Lineage
The Dragon’s Tales: The Ecology of the Carbon Age
The Dragon’s Tales: The Caste Ecology of the Age of Carbon
The Dragon’s Tales: Gasping for Paleo Air
The Dragon’s Tales: Were the Basal Archosaurs Endothermic?
The End of the Pier Show: Ashtrays and Authority
The End Of The Pier Show: On The Hardness of Biology
The Filter: Choose Research
The Flying Trilobite: Haldane’s Precambrian Puzzle
The Flying Trilobite: Flying & Asthma
The Flying Trilobite: Support The Beagle Project with Flying Trilobite Reproductions (just the art, instead of a cartoon)
The Flying Trilobite: Haldane’s Precambrian Puzzle (the picture)
The Green Grok: Understanding Oil
The Gulf Stream: The Accidental Locavore
The Ideophone: Migration stories
The Ideophone: Zotero, an Endnote alternative
The Ideophone: Under the spell of ideophones
The Ideophone: Fresh wild melon and meat full of gravy: food texture verbs in G|ui (Khoisan)
The Inverse Square Blog: Friday (Isaac) Newton Blogging: Monday Cosmology Edition
The Inverse Square Blog: 2%: The US Civil War, mathematics, and why we have already lost in Iraq
The Inverse Square Blog: Bad Science Kills People: Bush administration/heroin edition.
The Inverse Square Blog: A Little Weekend Palin/Physics Snark
The Loom: Whales: From So Humble A Beginning…
The Loom: The Clock That Breeds
The Loom: Even Blood Flukes Get Divorced
The Loom: The Allure of Big Antlers
The Loom: The Bird That Dare Not Speak Its Name
The Loom: A New Step In Evolution
The Loom: Dawn of the Picasso fish
The Mouse Trap: Evolution of Life: the eight stage process repeating again and again?
The Mouse Trap: The (eight) basic adaptive problems faced by all animals (esp humans)
The Musings of a Life-Long Scholar: Because I like it
The Musings of a Life-Long Scholar: How I became a Geologist
The Musings of a Life-Long Scholar: Connecting Microscopic and Continental Scales
The Natural Patriot: Biodiversity and the limits to growth
The OpenHelix Blog: The Beginnings of Immunofluorescence
The Other 95%: Right Whale Lice
The Oyster’s Garter: Urochordata, Urochordata, Rah, Rah, Rah!
The Oyster’s Garter: Perverted cannibalistic hermaphrodites haunt the Pacific Northwest!
The Oyster’s Garter: How a coccolithophore without its plates is like a grin without a cat
The RNA Underworld: De novo origination of a gene encoding a functional protein
The Scientific Activist: Why Are Veins Blue?
The Scientific Activist: Do You Want to Be Able to Crap Gold?
The Scientific Activist: Water on Mars, Part 1
The Scientist: On depression–a personal perspective
The Scientist: On the Nature of Networking
The Scientist: We are Stardust
The Sciphu Weblog: Now this is why we need genetic counselors
The Sciphu Weblog: How everything is a mess and still ok
The Sciphu Weblog: Was it all in vain ? The scientific method tale
The Skeptical Alchemist: From chance to function: the story of one gene (part 1)
The Skeptical Alchemist: From chance to function: the story of one gene (part 2)
The Skeptical Alchemist: From chance to function: the story of one gene (part 3)
The Tree of Life: The Fake Science News (or, Spitzer on OA): Eisen Resigns in Disgrace Over Scandal
The Tree of Life: What is so bad about brain doping? Apparently, NIH thinks something is.
The Tree of Life: Freeing My Father’s Scientific Publications
The Tree of Life: Tracing the evolutionary history of Sarah Palin: links to a parasitic nematode and the pathogenic fungus Botryotinia fuckeliana
The Wild Side: Cancer of the Devil
Thesis – with Children: What is Fair?
Thesis – with Children: The Semi-Adult
Thinking is Dangerous: Bluffer’s Guide to Consumer-Related Science Papers
Thoughts from Kansas: King penguin becomes a knight; his relatives are endangered by global warming
Thoughts from Kansas: The business of psychics
Thoughts from Kansas: Back to the framing wars
Thoughts from Kansas: With friends like these, or Tony Campolo gets eaten by the Hitler zombie
Thus Spake Zuska: The Proper Way To Be A Woman In Science
Tomorrow’s Table: The Whirlpool of Scientific Thought
Tomorrow’s Table: 10 Things about GE crops to Scratch From Your Worry List
Tomorrow’s Table: Blogging from Bangladesh, part 5 of 7
Tom Paine’s Ghost: Biochemistry of Halloween: Installment 1
Tom Paine’s Ghost: Freedom of the Genetic Press? Can newly created letters of life’s alphabet be patented?
Uncertain Principles: Physical Theories Squeak When You Chew Them
Uncertain Principles: What Everyone Should Know About Science
Uncertain Principles: The Innumeracy of Intellectuals
Uncertain Principles: We Are Science
Uncertain Principles: Relative Dog Motion
Uncertain Principles: Everything is Relative in the Magic Closet
UsefulChem: Experimental Uncertainty Principle
UsefulChem: Science is about mistrust
Web 2.0 and Semantic Web for Bioinformatics: Open Access, Science Commons, Open Science
What is interesting me today?: Science – the new cool?
What is Life?: Work and Life Balance & Importance of Sleep!
What is Life?: Who am I?
Wired Science: The Nanotech Antidote to Food Poisoning
Wired Science: Semen Proteomics Sheds Light on Loyalty and Evolution
Wired Science: Molecular Evidence that Broccoli Fights Prostate Cancer
Wired Science: Gene Editing Could Make Anyone Immune to AIDS
Wired Science: Experimental Drug Makes the Immune System Revolt Against Cancer
Wired Science: Should Scientists Date People Who Believe in Astrology?
Wired Science: Video: The Biggest Medical Scam Since Alex Chiu’s Immortality Device
Wired Science Blog: Correlations: The Third Branch of Science?
Working the Bench: Publications & Grants Don’t Matter – Just Pedigree
XKCD: Unscientific
XKCD: Height
XKCD: Scientific Fields arranged by Purity
Zimblog: The gender gap in math has disappeared

Today’s carnivals

Berry Go Round # 11 is up on Catalogue of Organisms
Carnival of Elitist Bastards, VIII is up on Cafe Philos
Carnival of the Green #156 is up on Healthy Child Healthy World

ScienceOnline’09 on the Radio!

scienceonline09.jpg
This Wednesday at 11am, tune in to Radio In Vivo with Ernie Hood at WCOM-FM 103.5 in Carrboro, NC (or check out the podcast online afterwards), because the show will be fantastic:

Radio In Vivo
December 3, 2008
Guests: David Kroll (NCCU), Anton Zuiker (Duke), Bora Zivkovic (PLOS) – co-organizers of ScienceOnline’09
Topic: ScienceOnline’09, coming Jan. 16-18, 2009, Sigma Xi, RTP

Ernie will even open up the phone lines (919-929-9601) for the audience so you can call in to heckle us or ask really tough questions 😉

Plant a Seed in every classroom

Now you can donate a subscription to Seed Magazine to a classroom of your choice:

Earlier this year, as part of the DonorsChoose Blogger Challenge, ScienceBlogs readers donated over $18,000 toward science literacy.
Seed Media Group was proud to donate a further $15,000, bringing the ScienceBlogs community’s total contribution to over $33,000. Schools around the nation are already putting these badly-needed funds toward science classrooms and labs.
Science literacy is a crucial element in driving progress. We believe that by providing the next generation access to scientific perspectives, by introducing them to the stories of how we, our world, and our universe work, we are handing them the first critical tools to help build a healthy, prosperous future.
In the spirit of the DonorsChoose Blogger Challenge, we are offering the chance to give the gift of science year-round. Donate a Seed magazine subscription to a science classroom and we’ll give you the base subscription price of $14.95. You may donate one or more subscriptions to a school (or schools) of your choice, or, if you do not have a specific school in mind, DonorsChoose has selected schools that are most in need of these donations and will happily choose one for you.
We’re proud of the ScienceBlogs community, and of what we’ve been able to achieve together for science education. Thank you!

New and Exciting in PLoS this week

Let’s see what is new in PLoS Medicine, PLoS Biology and PLoS ONE today:
Time-of-Day-Dependent Enhancement of Adult Neurogenesis in the Hippocampus:

Adult neurogenesis occurs in specific regions of the mammalian brain such as the dentate gyrus of the hippocampus. In the neurogenic region, neural progenitor cells continuously divide and give birth to new neurons. Although biological properties of neurons and glia in the hippocampus have been demonstrated to fluctuate depending on specific times of the day, it is unclear if neural progenitors and neurogenesis in the adult brain are temporally controlled within the day. Here we demonstrate that in the dentate gyrus of the adult mouse hippocampus, the number of M-phase cells shows a day/night variation throughout the day, with a significant increase during the nighttime. The M-phase cell number is constant throughout the day in the subventricular zone of the forebrain, another site of adult neurogenesis, indicating the daily rhythm of progenitor mitosis is region-specific. Importantly, the nighttime enhancement of hippocampal progenitor mitosis is accompanied by a nighttime increase of newborn neurons. These results indicate that neurogenesis in the adult hippocampus occurs in a time-of-day-dependent fashion, which may dictate daily modifications of dentate gyrus physiology.

Mutualistic Interactions Drive Ecological Niche Convergence in a Diverse Butterfly Community:

What governs the composition of communities of species? Competition promotes divergence in behavior and habitat, allowing species to co-exist. But the effects of other interactions, such as mutualism, are less well understood. We examined the interplay between mutualistic interactions, common ancestry and competition in mimetic butterflies, one of the best studied examples of mutualism, in which species converge in wing pattern to advertize their toxicity to predators. We showed that mutualism drives convergence in flight height and forest habitat, and that these effects outweigh common ancestry (which should lead related species to be more similar) and competition (which promotes ecological divergence). Our findings imply that species that benefit from one another might evolve to form more tightly knit local communities, suggesting that adaptation is a more important process affecting community composition than is commonly suspected. Our results also support the idea that mimicry can cause speciation, through its multiple cascading effects on species’ biology.

The Prevalence of Mental Disorders among the Homeless in Western Countries: Systematic Review and Meta-Regression Analysis:

There are well over a million homeless people in Western Europe and North America, but reliable estimates of the prevalence of major mental disorders among this population are lacking. We undertook a systematic review of surveys of such disorders in homeless people. We searched for surveys of the prevalence of psychotic illness, major depression, alcohol and drug dependence, and personality disorder that were based on interviews of samples of unselected homeless people. We searched bibliographic indexes, scanned reference lists, and corresponded with authors. We explored potential sources of any observed heterogeneity in the estimates by meta-regression analysis, including geographical region, sample size, and diagnostic method. Twenty-nine eligible surveys provided estimates obtained from 5,684 homeless individuals from seven countries. Substantial heterogeneity was observed in prevalence estimates for mental disorders among the studies (all Cochran’s χ2 significant at p 85%). The most common mental disorders were alcohol dependence, which ranged from 8.1% to 58.5%, and drug dependence, which ranged from 4.5% to 54.2%. For psychotic illness, the prevalence ranged from 2.8% to 42.3%, with similar findings for major depression. The prevalence of alcohol dependence was found to have increased over recent decades. Homeless people in Western countries are substantially more likely to have alcohol and drug dependence than the age-matched general population in those countries, and the prevalences of psychotic illnesses and personality disorders are higher. Models of psychiatric and social care that can best meet these mental health needs requires further investigation.