Category Archives: Birds

I And The Bird

I And The Bird #34 is up on Tortoise Trail.

I and the Bird

Beyond nest eggs: I and the Bird #33 is up on Don’t Mess With Taxes.

You’re ugly, but I like your kids anyway

Mother Birds Give A Nutritional Leg Up To Chicks With Unattractive Fathers:

Mother birds deposit variable amounts of antioxidants into egg yolks, and it has long been theorized that females invest more in offspring sired by better quality males. However, a study from the November/December 2006 issue of Physiological and Biochemical Zoology shows that even ugly birds get their day. Providing new insight into the strategic basis behind resource allocation in eggs, the researchers found that female house finches deposit significantly more antioxidants, which protect the embryo during the developmental process, into eggs sired by less attractive fathers.

It’s moved from sex steroids to antioxidants, I see. Can someone please send me this paper so I can comment more fully?

But HOW do they do it?

Bird Moms Manipulate Birth Order To Protect Sons:

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Since 2002, Badyaev, Oh and their colleagues have been intensively documenting the lives of a population of house finches (Carpodacus mexicanus) on the UA campus.
Throughout the year, the researchers capture birds several times a week to band and measure them and to take DNA and hormone samples. During the breeding season, the researchers locate the nests, keep track of activity in the nest, follow nestling growth and development, and take DNA samples from the chicks.
The researchers have also been counting the numbers of mites on the birds and documented a seasonal pattern. When breeding starts in February, the mites are absent. As winter turns to spring, mites start showing up on the adult females, in their nests and on their nestlings. The exact timing depends on the year.
Mites can kill nestlings.
“When it is safer inside the nest than outside, then there’s no need for young to leave the nest until growth is complete, but when mortality risk of staying in the nest is great, chicks need to complete their growth fast and get out as soon as they can,” Badyaev said. “What should a mother do in the face of shifting mortality risk?”
“To leave the nests sooner and still survive outside of nests, the kids need to grow faster,” Badyaev said. “But the mechanisms which regulate nestling growth in relation to changing mortality were not known.”
So the researchers looked to see how finch moms changed their child-rearing strategy so as to always do best by their kids.
The birds lay one egg per day. To successfully raise baby finches in the presence of mites, the mothers altered the order in which male and female eggs were laid.
When mites were absent, the chances of any particular egg being male or female were even. But once mites came into the picture, the mothers laid female eggs first and male eggs last.
Males that grew during mite season did more of their development in the egg before hatching. Their mothers accelerated their sons’ growth, both in the egg and after they hatched.
“Mothers essentially hid their sons in the eggs,” Badyaev said.
It’s remarkable that the fledglings have such similar morphology with or without mites, he said. “Mothers did that by modifying the order of laying of male and female eggs and the pattern of their growth.”

This is cool ecology and evolution. But where is the physiology, i.e., the mechanism of birth-order of sexes?

March Of The Penguins, again

Hungry Hyena has an interesting critique of the movie.

BIRDS!!!!

I And The Bird #32 is up on Sand Creek Almanac

New Bird Species!

New bird species found in India after more than 50 years
bugun%20leocichla.jpg

New Delhi: A striking multi-coloured bird has been discovered in India’s remote northeast, making it the first ornithological find in the country in more than half a century, experts said on Tuesday.
The Bugun Liocichla, scientifically known as Liocichla bugunorum, a kind of babbler, was discovered in May at the Eaglenest Wildlife Sanctuary in the hilly state of Arunachal Pradesh.
The bird with olive and golden-yellow plum-age, a black cap and flame-tipped wings is 20 cm in length and named after the Bugun tribespeople who live on the sanctuary’s periphery.
Professional astronomer and keen birdwatcher, Ramana Athreya, who discovered the bird said that although two Bugun Liocichlas were caught and examined at the sanctuary, both were released and no scientific specimen collected.
“We thought the bird was just too rare for one to be killed [for scientific study],” said Athreya. He wrote a paper which was circulated among foreign and Indian experts including Pamela C. Rasmussen, assistant curator of mammalogy and ornithology at Michigan State university, and author of The Ripley Guide of Birds of South Asia.
The experts verified the Bugun Liocichlas as a new species and the International Commission on Zoological Nomenclature then approved the name.
The last new bird species to be discovered in mainland India was the Rusty-throated “Mishmi” Wren-babbler Spelaeornis badeigularis in Arunachal Pradesh in 1948. The known population of the Bugun Liocichla consists of only 14, including three breeding pairs.
Athreya said he had first briefly spotted the bird in 1995. “But it was only this year after I had a sufficiently good look that we could move into the matter.”

Are cryptochromes involved in magnetoreception in migratory birds?

Scientists discover molecule behind birds’ magnetic sense:

“Some birds, notably migratory species, are able to detect the Earth’s magnetic field and use it to navigate. New results from a team of Franco-German researchers suggest that light-sensitive molecules called cryptochromes could be the key to the birds’ magnetic sense.

They did not suggest it – they tested a 10-year old hypothesis.

Cryptochromes are photoreceptors which are sensitive to blue light, and they are involved in a number of processes linked to the circadian cycle, such as growth and development.

Caution: cryptochromes have different functions in different organisms. They are very closely related to photolyases, molecules involved in DNA repair. They are photopigments in plants, but have no circadian function in them. They are involved in circadian phototransduction in insects, but are not pigments and are not clock genes in them. They are core circadian genes in vertebrates, but are not pigments in them. So, we have to be careful when dealing with such a jack-of-all-trades.

Birds’ ability to detect magnetic fields is affected by light; this ‘sixth sense’ only works properly in the presence of blue or green light, while light of other wavelengths disrupts the magnetic sense.

Do you know how much I hate the phrase “sixth sense’?

The scientists realised that the cryptochromes could well be involved in the perception of the magnetic field, as they have all the physical and chemical properties needed, notably the absorption of blue and green light and the formation of ‘radical pairs’ – molecules which respond to magnetic fields. Crucially, the retina of birds’ eyes is rich in cryptochromes.
Unable to test their hypothesis on migratory birds, the researchers turned to a laboratory plant, Arabidopsis thaliana, with similar properties. It is known that the activation of their cryptochromes by blue light influences the behaviour of these plants; for example it inhibits the growth of the hypocotyle (stem).

This is creative, but poses a problem that I mentioned above – in different environments (i.e. inside the bodies of different organisms with different genomes), cryptochromes assume different functions.

To determine whether the magnetic field influences the function of the cryptochromes, researchers from France’s National Centre for Scientific Research (CNRS) and universities in Frankfurt and Marbourg grew the plants in the presence of blue and red light and magnetic fields of varying strengths. They found that increasing the magnetic field only increases the inhibition of the growth of the hypocotyle in the presence of blue light. When red light is used, the plant uses other photoreceptors called phytochromes, and the growth of the hypocotyle is not affected by changes in the magnetic field. Furthermore, mutant plants which have no cryptochromes are also insensitive to changes in the magnetic field.

This is a nice piece in the puzzle, but nothing conclusive yet, of course.

The study shows for the first time that in plants, the work of the cryptochromes is affected by magnetic fields and suggests that the mechanisms of magnetic field perception in plants, and by extension in migratory birds, use the same photosensitive molecules. The researchers also suggest that, as cryptochromes have been strongly conserved throughout evolution, all biological organisms could have the ability to detect magnetic fields, even if they do not use them.”

The phrase “and by extension” worries me for the reasons I noted above.
As for all organisms detecting magnetic fields – yes, decades of research show that most can, from bacteria to, perhaps, even humans. However, this does not mean that cryptochromes are the magnetosensory molecules in all of them, or even that the radical-pair model of magnetoreception applies to all organisms.
It is well established that many organisms do not require the presence of blue-green light in order to orient by he magnetic fields. It is also known that many organisms, from bacteria through salmon to pigeons, possess miniscule crystals of feromagnetite. In bacteria, those form a chain running through the posterior medial line of the cell. In salmon and pigeons, they are embedded inside cell membranes of the dendrites of the trigeminal nerve.
So, cryptochromes may be involved in some way in magnetic sense of some organisms. Extrapolating any broader (i.e., it is the only mechanism; cryptochromes are the main element of the mechanism; this mechanism works in all organisms) is unlikely to be correct. So, the press release is hypoing the work beyond what it really shows. It is good. Actually, it is really cool. But the press release soured me on it.
For an excellent (and quite current) review of the topic, see this review (pdf) and for a moer lay-audience oriented, also quite current article, see this article on The Science Creative Quarterly.

Another Pretty Bird

Blue-throatedHummingbird_Female_01-Sipping_nectar.JPGI have a bunch of plants on my porch, mostly ferns, but also some flowers. One of these has really tiny flowers that I thought would be pollinated by small insects – not bigger than a honeybee. So, I was really surprised to see a hummingbird come and sip nectar out of it. Moreover, it is a huge hummingbird! OK, not as big as a stork, but huge for a hummingbird, bigger than any hummingbird I’ve seen before.
The bird is coming every day. It is noisy like a bumblebee. It looks at me and, as long as I do not move, it goes on and feeds, only 3-4 feet away from my face.
My daugher an I looked it up in Paterson – nothing there. We checked Sibley and it looks like a Blue-throated Hummingbird – a female. But the Sibley map does not show North Carolina as the place where this species is supposed to be found. It does have a single dot in southern South Carolina, though.
So, either I misidentified the species, in which case – what is it?
Or, Blue-throated hummingbird is normally found in North Carolina but Sibley does not register that.
Or, this is a strange individual lost in North Carolina.
Or, the species is slowly moving north in its geographical distribution due to global warming.
Which is it?

On This Day In History: Martha

Ectopistes_migratoriusFCN2P29CA.jpg
The last Passenger Pigeon, named Martha, died in the Cincinnati Zoo on September 1, 1914.

Pretty bird

American%20Goldfinch.jpgI have never seen these birds around here before, yet, over the last few days I saw tons of them all over the place. Where did they come from? Why do they seem to still be paired this late in the summer?
At first, I saw them flying, mostly from the car, and their flight is undulating, almost pulsating. Then, yesterday when I was walking the dog, I followed a pair around, from tree to tree, until I managed to get a good look at one of them for a good minute or so. I was surprised at how much larger they look in flight than when sitting still.
Anyway, after getting a good look, I went home and figured out that this is definitely American Goldfinch. I don’t have right kind of photo equipment to take a picture of such a small and flighty bird from a distance, so I am showing you a picture found on the Internet instead. A beautiful bird!

Bird Haiku

I And The Bird #31 is up on Migrateblog. Enjoy the poetry leading you to the best bird-writing on the Internet.

Phase-Response Curve and T-Cycles: Clocks and Photoperiodism in Quail

Blogging on Peer-Reviewed Research

This is a summary of my 1999 paper, following in the footsteps of the work I described here two days ago. The work described in that earlier post was done surprisingly quickly – in about a year – so I decided to do some more for my Masters Thesis.
The obvious next thing to do was to expose the quail to T-cycles, i.e., non-24h cycles. This is some arcane circadiana, so please refer to the series of posts on entrainment from yesterday and the two posts on seasonality and photoperiodism posted this morning so you can follow the discussion below:
There were three big reasons for me to attempt the T-cycle experiment at that time:

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Birds!

I And The Bird #30 is up on Burning Silo. Get your birding blogging thirst quenched today!

Does circadian clock regulate clutch-size in birds? A question of appropriatness of the model animal.

Blogging on Peer-Reviewed Research

 Does circadian clock regulate clutch-size in birds? A question of appropriatness of the model animal.This post from March 27, 2006 starts with some of my old research and poses a new hypothesis.

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Quail: How many clocks?

Blogging on Peer-Reviewed Research

One of the assumptions in the study of circadian organization is that, at the level of molecules and cells, all vertebrate (and perhaps all animal) clocks work in roughly the same way. The diversity of circadian properties is understood to be a higher-level property of interacting multicelular and multi-organ circadian systems: how the clocks receive environmental information, how the multiple pacemakers communicate and synchronize with each other, how they convey the temporal information to the peripheral clocks in all the other cells in the body, and how perpheral clocks generate observable rhythms in biochemistry, physiology and behavior.

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Persistence In Perfusion

Blogging on Peer-Reviewed Research

Persistence In PerfusionThis post, from January 25, 2006, describes part of the Doctoral work of my lab-buddy Chris.

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How eyes talk to each other?

Blogging on Peer-Reviewed Research

One of the important questions in the study of circadian organization is the way multiple clocks in the body communicate with each other in order to produce unified rhythmic output.

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Clock Tutorial #9: Circadian Organization In Japanese Quail

Circadian Organization In Japanese QuailGoing into more and more detail, here is a February 11, 2005 post about the current knowledge about the circadian organization in my favourite animal – the Japanese quail.

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Clock Tutorial #8: Circadian Organization In Non-Mammalian Vertebrates

Blogging on Peer-Reviewed Research

Circadian Organization In Non-Mammalian Vertebrates This post was originally written on February 11, 2005. Moving from relatively simple mammalian model to more complex systems.

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Birds on vacation

I And The Bird #29 is up on Alis Volat Propiis

Hot Peppers – Why Are They Hot?

Blogging on Peer-Reviewed Research

Some plants do not want to get eaten. They may grow in places difficult to approach, they may look unappetizing, or they may evolve vile smells. Some have a fuzzy, hairy or sticky surface, others evolve thorns. Animals need to eat those plants to survive and plants need not be eaten by animals to survive, so a co-evolutionary arms-race leads to ever more bizzare adaptations by plants to deter the animals and ever more ingenious adaptations by animals to get around the deterrents.
One of the most efficient ways for a plant to deter a herbivore is to divert one of its existing biochemical pathways to synthetise a novel chemical – something that will give the plant bad taste, induce vomiting or even pain or may be toxic enough to kill the animal.
But there are other kinds of co-evolution between plants and herbivores. Some plants need to have a part eaten – usually the seed – so they can propagate themselves. So, they evolved fruits. The seeds are enveloped in meaty, juicy, tasty packages of pure energy. Those fruits often evolve a sweet smell that can be detected from a distance. And the fruits are often advertised with bright colors – red, orange, yellow, green or purple: “Here I am! Here I am! Please eat me!”
hot_pepper_fresno.jpg
So, the hot peppers are a real evolutionary conundrum. On one hand, they are boldly colored and sweet-smelling fruits – obvious sign of advertising to herbivores. On the other hand, once bitten into, they are far too hot and spicy to be a pleasant experience to the animal. So, what gives?
Back in 1960s, Dan Johnson had an interesting proposal he dubbed “directed deterrence” which suggested that some plants may make choices as to exactly which herbivores to attract and which to deter. Hot peppers are prime candidates for such a phenomenon. What is hot in peppers is capsaicin, a chemical that elicits a sensation of pain when it bind the vanilloid receptors in the nerve endings (usually inside the mouth) of the trigeminal nerve. As it happens, all mammals have capsaicin receptors, but it was found, relatively recently, that birds do not.
To test that hypothesis, Josh Tewksbury used two variants of hot peppers – one very hot (Capsicum annuum) and the other with a mutation that made it not hot at all (Capsicum chacoense) – and offered both as meals to rodents (packrats and cactus mice) and to birds (curve-billed thrashers).
All species ate the sweet kind about equally. When Josh offered them identically prepared meals made out of the hot stuff, the two rodents refused to eat it while the birds happily munched on it.
hot%20peppers%20graph.JPG
The study appeared in 2001 in Nature (pdf) and I saw Josh give a talk about it at that time as he was joining our department to postdoc with Dr.Nick Haddad. While my lab-buddy Chris and I gave him a lot of grief in the Q&A session on his lenient criteria of what constitutes a “hungry animal” (he needed them to be hungry for the feeding tests), still the main conclusions of the study are OK.
More importantly, it really happens in nature. Mammals avoid hot peppers out in Arizona where Josh studied them (and made videos of their behavior), but the birds gorged on peppers. When he analyzed the droppings of rodents and birds fed peppers, he saw that seeds that passed through avian intestinal tracts were fully fertile, while seeds eaten by mammals were chewed, crushed, broken or semi-digested and not fertile at all.
Additionally, the thrashers tend to spend a lot of time on fruiting shrubs of different kinds. While there, they poop. The hot pepper seeds in the droppings germinate right there and this is an ideal shady spot for them to grow.
What a great example of (co)evolutionary adaptations. Next time on this blog, the second Big Question: Why do we like to eat hot peppers?
Related: Hot Peppers

I and the Bird

I and the Bird #28 is up on Bogbumper

Obligatory Readings of the Day – Tetrapod Zoology

Do you read Darren Naish’s blog Tetrapod Zoology? If not, you should start now. Just check out some of the most recent posts, for example this two-parter on sea snakes: ‘A miniature plesiosaur without flippers’: surreal morphologies and surprising behaviours in sea snakes and Sea kraits: radical intraspecific diversity, reproductive isolation, and site fidelity.
Or, this two-part post about the importance of the shape of the birds’ bills: The war on parasites: a pigeon’s eye view and The war on parasites: an oviraptorosaur’s eye view.
Or an amazing four-part story about Angloposeidon, a dinosaur from the Isle Of Wight: ‘Angloposeidon’, the unreported story, part I, ‘Angloposeidon’, the unreported story, part II, ‘Angloposeidon’, the unreported story, part III and ‘Angloposeidon’, the unreported story, part IV.
Enjoy and have a good weekend!

I and the Bird #27

The first anniversary edition of I and the Bird is up on 10000 birds.

I and the Bird #26

A delightful World Cup-themed edition of I and the Bird is up on The Hawk Owls’ Nest. A great round-up and an excellent example of creative hosting.
Next edition is the First Year Anniversary of the carnival, so it goes back home to 10000 Birds. The theme is “why you blog, why you bird, or why you blog about birds”. Send your entries to Mike by July 5.

The Webbed Feet

The Aquatic Ape theory is bunk, but Aquatic Sparrow theory just got a huge boost. There is no way I can explain the Big Evolution News Of The Day as well as Grrrlscientist did, so please go here and enjoy the amazing news of the wading/aquatic ancestors of all modern birds, with the beuatiful pictures of excuisitely well-preserved fossils from China.

Transgenic Chicken

SEED Magazine has an interesting article on the advances in avian transgenics….

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New York City trip – Part V: Central Park

Friday, May 26th.
Morning
After such an exciting and exhausting first day, we gave ourselves the luxury of sleeping late on Friday. After grabbing some bagels and pretzels from street vendors, we took the kids on their first ever ride on the Underground. They were excited. Of course, we got on a wrong train which took us to Brooklyn. After we realized we have crossed a bridge, kids got nervous, but we just got out, crossed to the other side of the tracks and got on the same line in the other direction and back to Manhattan in minutes.

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What is ‘Coturnix’?

Where did I get my Internet handle? Answer below the fold…

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