Science and the New Media

Sheril Kirshenbaum will be on a panel on Science and the New Media at the AAAS Forum On Science And Technology Policy on May 9th and, as bloggers tend to do, she is asking for questions, comments and ideas from the readers. If you have some thoughts on the topic – science on the Web, etc., – go and join the discussion in the comments there.

Today’s carnivals

Grand Rounds 4.31, the medical blog carnival, is up on Dr. Val and The Voice of Reason
The newest edition of Gene Genie, the human genetics blog carnival, is up on My Biotech Life.
The Boneyard – Edition #18 – is up on Archaeozoology
Accretionary Wedge #8 is up on Andrew’s Geology Blog
The 39th edition of Four Stone Hearth is up on Hominin Dental Anthropology
The 168th edition of The Carnival of Education is up on The Education Wonk
Carnival of the Liberals #63 is up on Vagabond Scholar
Carnival of the Green #124 is up on EcoTech Daily
The 121st edition of the Carnival of Homeschooling is up on Principled Discovery

EuroTrip ’08 – Belgrade, Mom’s cooking is the best in the world

Nothing better than coming back home after a long time (13 years since my last visit), seeing my family and eating Mom’s food:

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Clock Tutorial #14: Interpreting The Phase Response Curve

Clock Tutorial #14:  Interpreting The Phase Response CurveThis is the sixth post in a series about mechanism of entrainment, running all day today on this blog. In order to understand the content of this post, you need to read the previous five installments. The original of this post was first written on April 12, 2005.

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ClockQuotes

A good time to keep your mouth shut is when you’re in deep water.
– Sidney Goff

OpenLab 2007

The second science blogging anthology, the Open Laboratory 2007 is now up for sale on Amazon.com. As the profits will go towards the organization of ScienceOnline’09, it is the best if you guide your readers to buy it directly from Lulu.com. However, it would be really nice if some of the readers wrote reviews on the Amazon.com page.
Also, do not forget to keep submitting new entries for the OpenLab’08.

New and Exciting in PLoS Medicine and PLoS Biology

Mutations in a Novel, Cryptic Exon of the Luteinizing Hormone/Chorionic Gonadotropin Receptor Gene Cause Male Pseudohermaphroditism:

A person’s sex is determined by their complement of X and Y (sex) chromosomes. Someone who has two X chromosomes is genetically female and usually has ovaries and female external sex organs. Someone who has an X and a Y chromosome is genetically male and has testes and male external sex organs. Sometimes, though, the development of the reproductive organs proceeds abnormally, resulting in a person with an “intersex” condition whose chromosomes, gonads (ovaries or testes), and external sex organs do not correspond. Leydig cell hypoplasia (LCH; also called male pseudohermaphroditism or a disorder of sex development) is an XY female intersex condition. People with this inherited condition develop testes but also have a vagina (which is not connected to a womb), and they do not develop breasts or have periods. This mixture of sexual characteristics arises because the Leydig cells in the testes are underdeveloped. Leydig cells normally secrete testosterone, the hormone that promotes the development and maintenance of male sex characteristics. Before birth, chorionic gonadotropin (CG; a hormone made by the placenta) stimulates Leydig cell development and testosterone production; after birth, luteinizing hormone (LH), which is made by the pituitary gland, stimulates testosterone production. Both hormones bind to the LH/CG receptor, a protein on the surface of Leydig cells. In LCH, this receptor either does not bind CG and LH or fails to tell the Leydig cells to make testosterone.
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These findings identify a new, functional exon in the LHCGR gene and show that mutations in this exon cause some cases of LCH. This is the first time that a human disease has been associated with mutations in an exon that is a target for NMD. In addition, these findings provide important insights into how the LHCGR is regulated. The researchers speculate that a complex network that involves the exon 6A-containing transcripts and NMD normally tightly regulates the production of functional LHCGR already at the transcriptional level. When mutations are present in exon 6A, they suggest, NMD is the predominant pathway for all the exon 6A-containing transcripts, thereby drastically decreasing the amount of functional LHCGR.

Iroquois Complex Genes Induce Co-Expression of rhodopsins in Drosophila:

Most sensory systems follow the rule “one receptor molecule per receptor cell.” For example, photoreceptors in the fly eye and cones in the human eye each express only one light-sensitive rhodopsin. Rhodopsins are G-coupled protein receptors, a class of ancient signaling molecules that mediate not just vision but also the sense of smell, the inflammatory response, and other physiological processes. However, the mechanisms that regulate mutual exclusion of receptor genes in the visual and olfactory systems are poorly understood. Each ommatidium in the fly eye consists of eight photoreceptors (R1-R8); six of which mediate broad-spectrum motion vision (R1-R6) and two that mediate color vision (R7 and R8). We identified a new class of photoreceptors in the fly retina that violates the one rhodopsin-one receptor rule. This subset of ommatidia, located in the dorsal third of the eye, co-expresses two ultraviolet-sensitive rhodospins (rh3 and rh4) in R7, while maintaining discrimination between green and blue opsins in R8. We took advantage of the genetic tools offered by the fruit fly to show that this co-expression depends on the Iroquois Complex (Iro-C) genes that are both necessary and sufficient to allow the two ultraviolet-sensitive rhosopsins to be expressed in the same R7 cell. These results shed new light on the mechanisms regulating co-expression of rhodopsins in the eye, and may well have implications for regulating co-expression in olfactory receptors and other G-protein coupled systems.

My picks from ScienceDaily

Neanderthals Speak Again After 30,000 Years:

Dr. Robert McCarthy, an assistant professor of anthropology in the Dorothy F. Schmidt College of Arts and Letters at Florida Atlantic University, has reconstructed vocal tracts that simulate the sound of the Neanderthal voice.

Slowly-developing Primates Definitely Not Dim-witted:

Some primates have evolved big brains because their extra brainpower helps them live and reproduce longer, an advantage that outweighs the demands of extra years of growth and development they spend reaching adulthood, anthropologists from Duke University and the University of Zurich have concluded in a new study.

Researchers Identify New Class Of Photoreceptors, Pointing To New Ways Sights And Smells Are Regulated:

The identification of a new class of photoreceptors in the retina of fruit flies sheds light on the regulation of the pigments of the eye that confer color vision, researchers at New York University’s Center for Developmental Genetics report in a new study appearing in the Public Library of Science’s journal, PloS Biology. The findings, they write, may also have implications for the regulating of olfactory receptors, which are responsible for the detection of smells, because both types of receptors belong to the same protein family.

Low Grades, Bad Behavior? Siblings May Be To Blame, Study Say:

We all know the story of a man named Brady and the group that somehow formed a family. But if the iconic ’70s sitcom about a “blended” family reflected reality, the Brady Bunch likely would have been dealing with much more than silly sibling squabbles. Here’s the real story: On average, adolescents living with half- or stepsiblings have lower grades and more school-related behavior problems, and these problems may not improve over time, according to Florida State University Assistant Professor of Sociology Kathryn Harker Tillman.

Many Captive Tigers Are Of Purebred Ancestry; Finding Raises Their Conservation Value:

Tigers held in captivity around the world–including those in zoos, circuses, and private homes–may hold considerable conservation value for the rapidly dwindling wild populations around the world, according to a new report published online on April 17th in Current Biology. Using a new method for assessing the genetic ancestry of tigers, researchers discovered that many apparently “generic” tigers actually represent purebred subspecies and harbor genomic diversity no longer found in nature.

Mice Can Sense Oxygen Through Their Skin:

Biologists at the University of California, San Diego have discovered that the skin of mice can sense low levels of oxygen and regulate the production of erythropoietin, or EPO, the hormone that stimulates our bodies to produce red blood cells and allows us to adapt to high-altitude, low-oxygen environments.

Blogrolling for Today

Niyaz Ahmed’s Blog


Worst Result Ever


Tomorrow’s Table


Stimulating Aliquot


Little Grassroots


A Baltimore Block


Via Ginnastica

Science 2.0 (repost)

From the ArchivesI think I have a profile on Friendster – I don’t know, I haven’t checked since 2003. I have bare-bones profiles on MySpace, LinkedIn and Change.Org and I will get an e-mail if you “friend” me (and will friend you back), but I do not have time to spend on there. I refuse to even look at all the other social networking sites like Twitter – there are only so many hours in the day.
But I am interested in possible ways of making science communication more interactive and more Webby 2.0, beyond just blogs. Pedro, Carl and Phillip have recently written thoughtful posts about this topic as well.

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Clock Tutorial #13: Using The Phase Response Curve

Clock Tutorial #13:  Using The Phase Response CurveThis is the fifth post in a series about mechanism of entrainment. Originally written on April 11, 2005.

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ClockQuotes

The other day I put instant coffee in my microwave oven … I almost went back in time.
– Steven Wright

Science 2.0

Do you remember when Mitch Waldrop wrote a draft of an article about Science 2.0 and asked for community feedback? He got 125 comments. Using them, he has now finalized the text and it appears in today’s edition of Scientific American: Science 2.0 — Is Open Access Science the Future? Is posting raw results online, for all to see, a great tool or a great risk?

Phase-Response Curve and T-Cycles: Clocks and Photoperiodism in Quail

Phase-Response Curve and T-Cycles: Clocks and Photoperiodism in QuailThis is a summary of my 1999 paper, following in the footsteps of the work I described here two days ago. The work described in that earlier post was done surprisingly quickly – in about a year – so I decided to do some more for my Masters Thesis.
The obvious next thing to do was to expose the quail to T-cycles, i.e., non-24h cycles. This is some arcane circadiana, so please refer to the series of posts on entrainment from yesterday and the two posts on seasonality and photoperiodism posted this morning so you can follow the discussion below:
There were three big reasons for me to attempt the T-cycle experiment at that time:

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Clock Tutorial #12: Constructing the Phase Response Curve

Clock Tutorial #12:  Constructing the Phase Response CurveThe fourth post in the series on entrainment, originally written on April 10, 2005, explains the step-by-step method of constructing a PRC.

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ClockQuotes

One must learn a different … sense of time, one that depends more on small amounts than big ones.
– Sister Mary Paul

EuroTrip ’08 – Trieste, Sunday dinner

In the end, late at night, I had dinner (goulash – excellent) with the Director of FEST and a bunch of young science journalists, all graduates (Masters) of the Trieste program in Science Communication (SISSA) and most of them involved in some way in the organization of FEST:

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EuroTrip ’08 – Trieste, Lawrence Krauss talk

FEST ended with a (excellent) keynote lecture by Lawrence Krauss:

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How eyes talk to each other?

How eyes talk to each other?One of the important questions in the study of circadian organization is the way multiple clocks in the body communicate with each other in order to produce unified rhythmic output.

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My picks from ScienceDaily

Mighty Microbes: Bacteria Filaments Can Bundle Together And Move Objects 100,000 Times Bacterium’s Body Weight:

Researchers from The University of Arizona and Columbia University have discovered that tiny filaments on bacteria can bundle together and pull with forces far stronger than experts had previously thought possible.

Work Hassles Hamper Sleep, Study Shows:

Common hassles at work are more likely than long hours, night shifts or job insecurity to follow workers home and interfere with their sleep. That’s the conclusion of a University of Michigan study presented April 17 at the annual meeting of the Population Association of America.

Are Humans Hardwired For Fairness?:

Is fairness simply a ruse, something we adopt only when we secretly see an advantage in it for ourselves? Many psychologists have in recent years moved away from this purely utilitarian view, dismissing it as too simplistic. Recent advances in both cognitive science and neuroscience now allow psychologists to approach this question in some different ways, and they are getting some intriguing results.

Older People Are Nation’s Happiest: Baby Boomers Less Happy Than Other Generational Groups:

Americans grow happier as they grow older, according to a University of Chicago study that is one of the most thorough examinations of happiness ever done in America.

Early Elephant ‘Was Amphibious’:

The scientists were investigating the lifestyle of two early elephants (proboscideans) Moeritherium and Barytherium that lived in the Eocene period, over 37 million years ago. By analysing isotopes in tooth enamel from Moeritherium they were able to deduce that it was very likely a semi-aquatic mammal, spending its days in water eating freshwater plants.’

Open Access in Italian

The podcast of the radio interview with Derek Law and me about Open Access is now available online. Most of the show is in Italian, but if you cannot understand it, our interview is in English and it starts at the 22:07 minute point.

Science Communication in the Age of Internet – in Belgrade

Yup, as soon as I land in Belgrade, I will be giving two lectures about Open Access and the Science Communication in the Age of Internet. The first one, this Tuesday at 11am, will be in the beautiful hall of the Museum of Contemporary Art in Belgrade, sponsored by the Serbian Museum Association and the Museum of Contemporary Art. The main target audience are librarians, but I gather that the lecture is open and quite heavily advertised.
The second lecture will be on the same day at 2pm in the Decanate of the Medical school at the University of Belgrade, geared more towards the physicians, students and researchers. More information will follow, as soon as I get it.
Many thanks to Vedran and two of my childhood friends who are now professors in the Medical school, for organizing these events.
You can RSVP on Facebook:

Serbian Museum Association
e-mail: mdsrbije@infosky.net
www.mds.org.yu
i
Salon Muzeja savremene umetnosti
Pariska 14, Beograd
tel/fax: +381 (0)11 2630 940
www.msub.org.yu
Utorak, 22. april 2008. u 11 casova
Predavanje Bore Zivkovica:
KOMUNIKACIJA NAUKE U DOBA INTERNETA
Bora Zivkovic je internet menadzer za Public Library of Science, organizaciju koja objavljuje naucne radove po principu Otvorenog Pristupa (Open Access). Predavanje ce predstaviti najnovije razvoje u komunikaciji nauke na internetu, ukljucujuci naucne blogove i vikije, koncept Javne Laboratorijske Sveske i Otvorenog Pristupa.
Predavanje ce se odrzati u Salonu Muzeja savremene umetnosti.
Molim vas da potvrdite svoje prisustvo na predavanju.
Kontakt osoba:
– Olivera Nastic, predsednik Sekcije bibliotekara i knjiznicara specijalnih bilioteka MDS
Muzej savremene umetnosti, Beograd, 011/3115-713.
Slicno predavanje, istoga dana u 14h, ce se odrzati u sali Dekanata medicinskog fakulteta u Beogradu. Pristup otvoren.

EuroTrip ’08 – Trieste, the last day

Some more pictures….

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Clock Tutorial #11: Phase-Shifting Effects Of Light

Clock Tutorial #11: Phase-Shifting Effects Of LightThe third post in the series on entrainment, first written on April 10, 2005, starts slowly to get into the meat of things…As always, clicking on the spider-clock icon will take you to the site of the original post.

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EuroTrip ’08 – Trieste, Professor Steve Steve makes a splash

Professor Steve Steve went to FEST with me yesterday and made many friends (I told his story 50 times at least). Here he is with Lawrence Krauss:
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And I hope Mrs.Coturnix does not click on the “Read on….” button, as Professor Steve Steve is a well-known and certified babe magnet:

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EuroTrip ’08 – Trieste, the Scienceblogging session, part II

Here are some even better pictures from the panel:
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EuroTrip ’08 – Trieste, the Scienceblogging session

The science blogging session yesterday was really fun. I am wearing headphones as everyone else was speaking Italian, so I listened to the simultaneous translation. The locals also listened to me via the interpreter:
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ClockQuotes

Who can tell whether learning may not even weaken invention in a man that has great advantages from nature and birth; whether the weight and number of so many men’s thoughts and actions may not suppress his own or hinder the motion and agitation of them, from which all invention arises; as heaping on wood, or too many sticks, or too close together, suppresses, and sometimes quite extinguishes a little spark, that would otherwise have grown up to a noble flame.
– Sir William Temple

Quail: How many clocks?

Quail:  How many clocks?One of the assumptions in the study of circadian organization is that, at the level of molecules and cells, all vertebrate (and perhaps all animal) clocks work in roughly the same way. The diversity of circadian properties is understood to be a higher-level property of interacting multicelular and multi-organ circadian systems: how the clocks receive environmental information, how the multiple pacemakers communicate and synchronize with each other, how they convey the temporal information to the peripheral clocks in all the other cells in the body, and how perpheral clocks generate observable rhythms in biochemistry, physiology and behavior.

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EuroTrip ’08 – Trieste, James Joyce

Not many people know that James Joyce spent 11 years in Trieste as a lecturer at the University. Now, his bronze statue still walks the bridge across the canal on Ponte Rossa:
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EuroTrip ’08 – Trieste, dogs at FEST

I love how many dogs I saw roaming FEST and learning about science….
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Clock Tutorial #10: Entrainment

Clock Tutorial #10: EntrainmentThis is the second in a series of posts on the analysis of entrainment, originally written on April 10, 2005.

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EuroTrip ’08 – Trieste, the Friday dinner

Yes, that is Lawrence Krauss on the left….

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EuroTrip ’08 – Trieste, Radio3

Last night, Derek Law and I were taped for about 15 minutes for Radio3, about Open Access and the world of publishing:

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EuroTrip ’08 – Trieste, Open Access for Dummies

Yesterday afternoon, Sely Costa and Derek Law did a fun session, where she pretended to be an unconcerned citizen and he tried to persuade her that OA is a good thing. It was a fun way to demonstrate how OA benefits everyone, not just researchers.

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My picks from ScienceDaily

Clues To Ancestral Origin Of Placenta Emerge In Genetics Study:

Researchers at the Stanford University School of Medicine have uncovered the first clues about the ancient origins of a mother’s intricate lifeline to her unborn baby, the placenta, which delivers oxygen and nutrients critical to the baby’s health.

Lizards Undergo Rapid Evolution After Introduction To A New Home:

In 1971, biologists moved five adult pairs of Italian wall lizards from their home island of Pod Kopiste, in the South Adriatic Sea, to the neighboring island of Pod Mrcaru. Now, an international team of researchers has shown that introducing these small, green-backed lizards, Podarcis sicula, to a new environment caused them to undergo rapid and large-scale evolutionary changes.

Presumed Extinct Javan Elephants May Have Been Found Again – In Borneo:

The Borneo pygmy elephant may not be native to Borneo after all. Instead, the population could be the last survivors of the Javan elephant race – accidentally saved from extinction by the Sultan of Sulu centuries ago, a new publication suggests.

The Deep History of the Microsoft Help-Desk

EuroTrip ’08 – Trieste, Franc Nekrep

One of the highlights of the visit to Trieste was the opportunity to finally meet an old blog-friend of mine. Franc Nekrep is a professor of Mikrobiology in Ljubljana, Slovenia and we have been reading each others blogs for a couple of years now. It was so much fun to finally meet in person. He came to the Open Access session and then we went out for lunch and had a great time. Check his blogs (as much as you can understand Slovenian): MIKROB(io)LOG and LiLoLe:
Franc.jpg
Oh, and for my foodblogging friends who would chastise me if I missed posting pictures of the food we had, here they are – buffalo mozzarella, chicken with mushrooms, and steak with (embedded) parmesan:

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EuroTrip ’08 – Trieste, the Open Access panel

Here are, quickly for now, some pictures from the yesterday’s panel “Open Access; let’s do it: top down, bottom up or both?” Stevan Harnad did his presentation first via Skype (from Montreal) which was, unfortunately, not recorded. The rest of the session was recorded and at some time in the future will become available online – I will let you know when this happens.
Since most of the panel discussed institutional library repositories, I felt I needed to focus entirely on the “other Open Access”, i.e., the OA journals, especially PLoS. More later….(also it seems that the wifi at the hotel is working better today).
The first picture is of the empty room – I forgot to take the “after” picture of the full room, but believe me it was:

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Today’s carnivals

To Hell with Expelled! a special, one-time carnival is up on Dinosaurs and The Bible: A Creationist’s Fairy Tale
Change of Shift: Volume Two, Number 21 is up on Nurse Sean (dot) com
I and the Bird #73 is up on A Snail’s Eye View
Friday Ark #187 is up on Modulator

ClockQuotes

Politicians are quite unfit for government. They are however very useful for ceremonial banquets, official openings, launchings, unveilings, and greeting foreign delegations, leaving more time for the genuine work of government to those of us who have the proper training and experience.
– Sir Humphrey Appleby

EuroTrip ’08 – Trieste, the Open Access dinner

It’s nice to get to know your fellow panelists REALLY well over a dinner and wine the night before the event. So we got together and had great fun: Sely Costa from Brasil, A.R.D. Prasad from India, Derek Law and his wife from Scotland, Stefania from Italy and myself.
Warning – marine biology bloggers should not look under the fold.
Warning 2 – those offended by the idea that a Kinder-egg contains a winged Barbie look-alike as a toy should not look under the fold. Also, do not try to imagine the double- and triple-entendres and innuendo as I was trying to put her together and find the appropriate holes…
You were warned.

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EuroTrip ’08 – Trieste, part V

Trieste at night. Smell of the Adriatic sea, in which I learned to swim some decades ago, just two towns (and two border crossings) away from here. Ponte Rossa, where I got my first jeans, back in 1970 or so. Nostalgia.
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Ah, Zugunruhe!

Ah, Zugunruhe! How birds know when and where to migrate (from April 03, 2006)

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Clock Tutorial #9: Circadian Organization In Japanese Quail

Circadian Organization In Japanese QuailGoing into more and more detail, here is a February 11, 2005 post about the current knowledge about the circadian organization in my favourite animal – the Japanese quail.

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ClockQuotes

Rest is not idleness, and to lie sometimes on the grass under trees on a summer’s day, listening to the murmur of the water, or watching the clouds float across the sky, is by no means a waste of time.
– Sir John Lubbock

Sometimes I really want to use the F-word

I am having a blast in Trieste – FEST is fantastic, people friendly, program interesting, the smell of Adriatic evokes nostalgia (I learned to swim in the northern Adriatic), but I am really pissed with the Jolly Hotel I am in. Room is fine. But they charge wifi at exorbitant prices.
About a year ago, there was an outrage in the USA about hotels not providing internet access. But then, market forces kicked in as all the high-powered travellers started choosing those hotels that do provide free access. This forced most other hotels to do the same. Some still charge – but those charges are relatively reasonable – 5 or 10 dollars per day and the service you get is excellent.
Not here.
I am paying 50 euro for 5.5 hours. And the access is so shitty I cannot open up Google or Gmail most of the time, PLoS mail occasionally, the scienceblogs back-forums sometimes. I can see my blog and the Sb homepage (and other sciblings’ blog) but it is maddeningly slow. I cannot open Blogspot blogs almost ever, sitemer opens, MT opens fine, Facebook sometimes. This shitty service is provided by HiPort and the worst thing is that it is so bad I sometimes cannot access their own homepage in order to logout, so my gold-plated minutes keep ticking even when I am not doing anything productive (or at least trying to).
What a highway robbery!

Circadian Rhythms, or Not, in Arctic Reindeer

Blogging on Peer-Reviewed Research

Circadian Rhythms, or Not, in Arctic ReindeerA January 20, 2006 post placing a cool physiological/behavioral study into an evolutionary context.

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How do bats in a cave know if it is dark outside yet? Guest post by Anne Marie Hodge.

As traveling is not conducive to vigorous blogging (apart from posting travelogue pictures), I have asked a couple of friends to write guest posts here. The first to step up to the plate is Anne Marie who put together her passion for bats and my passion for biological clocks and wrote this fascinating post:

Blogging on Peer-Reviewed Research

Casinos on the infamous Vegas “strip” spare no expenses when it comes to extravagant decorations and architecture. You can find everything from indoor gondola rides to full-sized pirate ships that are sunk in mock-battles multiple times each day. One thing that you might notice, however, is that these massive, opulent buildings almost always lack windows in the rooms where major gambling activity takes place. The massive interior rooms echo with the bells of slot machines and the soft buzz of cards being dealt at hundreds of tables all throughout the day and night, and after several hours inside one of these caverns of opulence it is easy to forget what time of day it is supposed to be. That, of course, is the point: if you aren’t able to keep track of the passing hours by subtle cues such as the angle of the sun, casino managers hope that it will keep you (and your money) around for longer periods of time.
Fortunately, whether you are a high-rolling VIP showing off your Rolex or a more budget-minded tourist playing the quarter slots with your trusty plastic Aquatech strapped to your wrist, chances are you have some way to tell time even when you are sequestered from typical environmental day length clues. Other mammals, however, don’t have the luxury of mechanical time instruments. If even a few hours inside a windowless casino is enough to distort our natural perception of time, how do other mammals manage to keep regular daily rhythms?
Obviously, most mammals do not hang out in windowless casinos, and thus are able maintain circadian rhythms using external cues such as day length and temperature. Bora recently gave an excellent primer on mammalian circadian clocks, definitely check out that post for detailed information on how these rhythms are regulated.
Light cycles are crucial for proper circadian clock calibration, but some animals live in large, isolated places that lack both sunlight and slot machines. The most notable cave mammals are bats, the winged wonders of the mammal world. The idea that all bats are caves-dwellers is actually a misconception. Many bat species roost in trees, buildings, or “bat houses” put out by helpful humans in areas where natural forest roots have been destroyed. Studies have shown that day length is the most common factor regulating bats’ daily activity cycles. Foraging strategies and diet specialization seem to have an impact on what time of night specific species emerge from their roosts. Insectivorous species often begin foraging a bit before true sunset, in spite of exposing themselves to increased predation risk, in order to take advantage of the peaks in insect activity at dusk (Jones and Rydell 1994). Fruit eating bats can afford to sleep in a little, because their “prey” isn’t likely to go anywhere between dusk and full darkness, so it’s not worth risking increased predation by diurnal or crepuscular predators. Thus, being able to detect the rising and setting of the sun is crucial for these bats to regulate their activity cycles.
While many common species of bats never even venture into caves, some species do indeed roost in large caves that are entirely devoid of light. Without being able to see when the sun rises and sets, how do these little guys maintain regular circadian rhythms?
bat.JPGThe most extensive studies of the circadian rhythms of cave bats have focused on Hipposideros speoris, Schneider’s roundleaf bat, which is native to India and Sri Lanka. Back in the 1980s, a group from Madurai Kamaraj University did some fascinating work to determine how these bats are able to tell when it is time to leave the cave for foraging each night (Marimuthu et al. 1981). Within the cave roost, bats are isolated from both light and temperature fluctuations, so the researchers sought another explanation for how they calibrate their circadian clocks. They did this by capturing some of the bats within a large colony of H. speoris, then putting them in holding cages inside the original cave, to observe their activity patterns in situ without ever letting them access a chamber of the cave that could give them external light or noise cues.
So, what did the Cave Cage experiment tell us? Surprisingly, it appears that social interactions are the key. The bats were observed to become mildly active within the cave well before the sun went down, and they spent some time grooming and flitting around within the roost chamber. Some of those bats ventured in between the roost chamber and into an outer portion of the cave, “sampling” the light. Once adequate darkness set in, all of the bats (not just the “samplers,” left the cave to forage. The caged bats also increased their activity in sync with the rest of the colony, even though they were unable to “sample” the outer chambers. The researchers concluded that the bats’ circadian rhythms were entrained by social cues. Bats could have been responding to the noise of the wingbeats of the first bats to leave the cage, or there could have been active vocal signaling. Pheromones could also come into play, if specific hormones are released by “samplers” as they prepare to leave for foraging, signaling the rest of the colony that it is time to leave.
One question that immediately crossed my mind was how the bats know when to start stirring around in the first place, It seems probable that the nightly emergence “sets” their clocks so that they’re properly entrained to wake up slightly before sunset, using hormones such as melatonin to control the length of their sleep cycle. These are largely tropical bats, so day length does not vary much throughout the year, allowing them to have a fairly constant interval of sleep in between returning from foraging in the morning and waking up in the evening.
The group also observed activity patterns of captive bats kept inside a cave after exterminating all of the other bats that roosted there (not the most conscientious field method, but not quite as terrible as it sounds: it was a small bachelor roost and only two bats were killed). They found that bats that were isolated from conspecifics displayed “free run” activity cycles that were significantly less than 24 hours long. Thus, it appears that the bats use social cues from other colony members to time their outflight.
There is no information on whether the same individuals are “samplers” each night, although that would be a fascinating study. While social cues do appear to play a large factor in determining the circadian rhythms of H.speoris colonies, sunlight is still a factor: the “samplers” couldn’t determine the time of day without sunlight available for sampling. The researchers did a follow-up study a few years later that shows that both light and conspecific communication are necessary to maintain accurate cycles. This time, they illuminated a cave around the clock (Marimuthu and Chandrashekaran 1983). Being exposed to constant light, with conspecifics resulted in free run cycles longer than 24 hours, as opposed to the shortened cycles displayed by isolated bats in constant darkness, showing that light cues facilitated by social communication appear to entrain the circadian clocks of these bats.
So, it appears that some bats depend upon social cues to help regulate their circadian clocks, with a few individuals in the colony serving as light “samplers” and alerting the other bats when it is time to emerge for nightly foraging. They still depend upon light cues for regulation, but the significant factor is that only a few actually see the light levels before emerging each evening, the rest rely upon social cues to tell them when it’s dinner time and entrain their internal clocks.
1. Image credit: Phil Richardson
References:
Jones, and Rydell. 1994. Foraging strategy and predation risk as factors influencing emergence time in echolocating bats. Phil. Trans. R. Soc. Lond. B. 345: 445-455.
Marimuthu, G.S. and M.K. Chandrashekaran. 1983. Continuous light inside a cave abolishes the social synchronization of the circadian rhythm in a bat. Behavioral Ecology and Sociobiology. 12: 321-323.
Marimuthu, G., S. Rajan, and M.K. Chandrashekaran. 1981. Social entrainment of the circadian rhythm in the flight activity o fthe microchiropteran bat Hipposideros speoris. Behavioral Ecology and Sociobiology, 8: 147-150.

EuroTrip ’08 – Trieste, part IV, the Professor Steve Steve edition

Professor Steve Steve went to FEST with me today and saw some impostors that came all the way from China, some nice FEST employees (good – I realized I did not do enough teasing of Mrs.Coturnix by posting pictures of beautiful people of the XY karyotype lately), cool Italian science journalists and bloggers like Elisabetta Tola and Marco Boscollo, and had a real Italian pizza for lunch:

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