Clock Quotes

It is odd but agitation or contest of any kind gives a rebound to my spirits and sets me up for a time.
– George Gordon Noel Byron

#scio10 intro Cameron Neylon (video)

#scio10 intro: Rhitu Chatterjee (video)

#scio10 intro: Carmen Drahl, C&E News (video)

Today’s carnivals

I and the Bird #117 is up on the Marvelous in Nature
Change of Shift – Volume 4, No. 15 – is up on Emergiblog
Friday Ark #279 is up on Modulator

Elia Ben-Ari at ScienceOnline2010 (video)

New and Exciting in PLoS ONE

There are 18 new articles in PLoS ONE today. As always, you should rate the articles, post notes and comments and send trackbacks when you blog about the papers. You can now also easily place articles on various social services (CiteULike, Mendeley, Connotea, Stumbleupon, Facebook and Digg) with just one click. Here are my own picks for the week – you go and look for your own favourites:

Continue reading

Clock Quotes

You are permitted in time of great danger to walk with the devil until you have crossed the bridge.
– Bulgarian proverb

ScienceOnline2010 – Desiree Schell video interview


Bora jumps!

ScienceOnline2010 video interview with Natalie Villalobos

Melina Interviews Glendon Mellow at ScienceOnline2010 (video)

Rachel Ward Interview at #scio10 (video)

Mike (Miss Baker’s student) interviews David Shiffman at ScienceOnline2010

New and Exciting in PLoS this week

Busy with ScienceOnline2010 I did not have time to check out the new articles in PLoS ONE and other PLoS titles. Finally I found some time today, and here are my picks from the past few days. As always, you should rate the articles, post notes and comments and send trackbacks when you blog about the papers. You can now also easily place articles on various social services (CiteULike, Mendeley, Connotea, Stumbleupon, Facebook and Digg) with just one click. There are my own picks for the week – you go and look for your own favourites:

Continue reading

Carl Zimmer and BoraZ on push and pull strategies for science communication at #scio10 (video)

Clock Quotes

Nature gives to every time and season some beauties of its own; and from morning to night, as from the cradle to the grave, it is but a succession of changes so gentle and easy that we can scarcely mark their progress.
– Charles Dickens

Making it real: People and Books and Web and Science at ScienceOnline2010


People
You cannot see the feedback that many participants at ScienceOnline2010 have already provided to Anton and me (keep them coming – we take the responses very seriously), but the recurring theme for the “highlight of the conference” question was “Meeting the People”; and the main request for the future is “provide more time for informal conversations”.
You will see even more of that kind of sentiment if you peruse the growing list of blog coverage. Or glean it from photographs posted on Flickr and Picasa here, here, here, here and here. Or on YouTube videos here and here.
While Early Bird Dinner, Friday Workshops, Coffee Cupping, Lab/Museum Tours, Friday gala, long lunch breaks, evenings at the hotel bar, and Saturday banquet were all good opportunities for mingling and schmoozing and networking, obviously people crave even more, and we will try to make sure to provide even more such opportunities next year. Your suggestions as to how to do this are welcome.
As the conference is growing, each year I get to meet many people I have only interacted online before. And for over 90% of them, as soon as they walk in I recognize them from their pictures on blogs and Facebook or their Twitter avatars, and squeal and jump and hug them as if seeing a long-lost friend. That is exactly how it feels. Some online denizens spill a lot of their personal life, glories and worries, on their blogs. But even those who write ‘serious’ blogs and never post anything personal or introspective, perhaps do not realize how much of their personality seeps through between the lines. And it is quite incredible how offline personalities match online personalities – no matter how hard one tries to concoct an artificial online persona, the real person comes through and is recognizable in Real Life at first Hello.
There were 267 people there. If I spent an hour with everyone, that would take almost two weeks with little-to-no sleep. Not having that much time, I at least tried to say Hello to everyone (almost succeeded!). Even a brief handshake and a smile is enough to put a human face to an online name and to make future online interactions more meaningful.
The importance of meeting online friends in real life is something that Anton Zuiker has instilled in all us locals here over the years. The BlogTogether is his brainchild – the unofficial organization of local (Triangle NC) bloggers that has over the years organized numerous meetups, Long Tables, and conferences, including the 2005 Bloggercon (where Anton and I first met – he was wondering who this n00b was sitting next to Dave Winer, not that I had any idea at the time who Dave Winer was), 2006 Podcastercon, and the four ScienceOnline conferences in 2007, 2008, 2009 and 2010.
Out of the small band of early adopters in the region grew a huge community of people who use the Web in various ways. And everyone craves the human touch and face-to-face contact. Just check the Social Carolina calendar – so many opportunities for online folks to meet in meatspace. There is a regular Triangle Tweetup, and Ignite Raleigh and soon the first TEDxRTP, there are monthly Techie Tuesdays at the RTP headquarters, not to mention all the smaller ad hoc gatherings. More specifically to science, there is now a large organization of Science Communicators of North Carolina, most of whom do at least part of their work online, and we have recently started Science In The Triangle website and blog where we announce, and subsequently report, on science and technology events and news in the area.
We kicked off the conference program on Saturday morning with a session on the importance of meatspace, science freelancing, science motels and coworking. One of the moderators of that session, Brian Russell, runs Carrboro Creative Coworking space, and the PRC building where we held the Friday workshops was just waiting for the conference to be over before it undergoes a complete redesign and renovation to become the second coworking space in the Triangle, focused on science and technology. The importance of face-to-face interactions was noted in several other sessions. And the BlogTogether spirit permeated the entire meeting.
Books
Who would have thunk that books would be such a hit at a gathering of Web evangelists (many of whom probably have Kindles and are salivating at the prospect of laying their hands on the iSlate)! But it was. There were two sessions dedicated to the topic, both often mentioned as “my favourite session” by the attendees. See some excellent coverage of those by Jennifer, Morgan, Eric and an entire series of posts by Brian.
Months ago, when I was putting together the program schedule and trying to assign rooms for session, I did not predict that books would be such a hot topic. It is totally my mistake, for which I apologize, for assigning one of these sessions to the small room.
The books included in the swag bags were quite a hit – and not just with us old fogies, but also with the younger set: Miss Baker’s high school students who went home with quite a loot! A number of people brought books for the book-exchange table in the back of the room, and if I am correct, all the books found new owners.
Many book authors were present, as well as bloggers who snagged book deals recently. Several brought (or had their publishers send) free copies of their books to the conference and were at the ready to sign them for the lucky winners. Durham’s Regulator Bookshop sold many copies of Michael Specter’s ‘Denialism’ and Felice Frankel’s ‘No Small Matter’ at the Friday Gala and ten lucky attendees at the gala got copies of ‘Denialism’ by raffle.
During Saturday banquet, books (including more ‘Denialism’ and ‘No Small Matter’, several copies of ‘Immortal Life of Henrietta Lacks’ by Rebecca Skloot, ‘Newton and the Counterfeiter’ by Tom Levenson, ‘The Carbon Age’ by Eric Roston, ‘The Tangled Bank’ by Carl Zimmer, ‘Jacob’s Ladder’ by Henry Gee, and several copies of 2006, 2007 and 2008 editions of Open Laboratory anthologies) went to the winners of Twitter Trivia Contest held in-between Ignite talks. The questions were about stuff said at the meeting earlier in the day and the guests tweeted their answers. We could all see on the screen who got the correct answers first. Some answers were very funny, and the people following from outside were confused with a flurry of short, seemingly meaningless tweets referring to duck penises and such. The toughest question was “what do Anton and Bora drink to celebrate the successful ending of the conference each year?” – only four people got it right (slivovitz – the fastest tweeter was John McKay, probably the person at the conference I waited the longest to finally meet in person – six years!) and no, it’s not Carl Zimmer’s blood.
On Friday, everyone signed the conference board and those whose signatures were covered by the dice won the remaining books:
signed board.jpg
Finally, those who could not get the books by luck, had to resort to blackmail
So, why are dead-tree books so popular with the online set? No idea! But perhaps there is something real about a book that kindles and slates and tablets and iPhones don’t have. Just like a conversation with a person while sitting at the same table feels more real than the conversation with the same person online (though the online dialogue may well be much more information-rich), it seems like a book feels more real than the electronic book reader. Both are objects of about the same size and weight, both have words on a page to be read – yet there is something more intimate about the paper book. You may read an eBook on an airplane or during daily commute on a train, but you want an old-timey book to take with you to the beach, or to snuggle with at home under the covers. Will that feeling disappear in another generation or two? I don’t know.
But if this sentiment persists for another year, perhaps we can organize something more next year, perhaps find all the published authors in the list of registrants in advance and get copies of everyone’s book for giveaways and other stuff – suggestions are welcome.
Twitter
One thing that happened between last year’s conference and this one was the explosion of Twitter. While collecting information about all the participants I also linked to their Twitter accounts and put together a Twitter List of all the participants. Obviously, a very large proportion of attendees were going to use Twitter, and many others were curious to follow the proceedings using this channel.
Anticipating this, we determined the hashtag (#scio10) early on and started our own Twitter account which, with 568 followers, obviously attracted many more people than just the participants.
In previous years, wifi was nice, but (except for moderators/presenters) not necessary. But this year, with everyone trying to tweet, wifi was essential. So we hired the pros – the amazing guys from SignalShare who made sure we were swimming in bandwidth and will also provide us with stats in a couple of weeks, which we may share with you later – for now: we transmitted 25 gigabytes of data over 2 days!
Not just that everyone could tweet and liveblog at all times, but session moderators got bold and logged into SecondLife in one session, and Skyped in guest speakers in two sessions (Science And Entertainment, and Open Access in the Developing World) without a glitch. Not to mention that (almost) all sessions were recorded (videos will be on YouTube shortly – a professional is editing them right now) and several were livestreamed on Ustream and a couple into SecondLife.
twitterscreen at RTP HQ.jpg
[Twitter Board at the RTP headquarters on Friday night]
Dr.Free-Ride was voted to be the best live-tweeter of the conference and has blogged some interesting thoughts about the experience (as well as a whole series of posts containing well organized collections of her tweets from each session – a good way to save the tweets forever). Check out also what Dave Munger wrote about it, as well as Chris Brodie’s links to (and evaluation of) various ways to find stored tweets (apparently almost 7000 of them, and still going strong three days after the meeting).
twitterscreen at SigmaXi.jpg
[Live Twitter screen]
Interestingly, our FriendFeed room was not used as much, considering that scientists and science bloggers tend to love it and use it a lot. I guess the purchase of FriendFeed by Facebook led many people to abandon the service although it is still, IMHO, the best venue for live online coverage of conferences. We’ll see what future brings – Google Wave?
Twitter itself was mentioned in many sessions as one of the tools people use to do, teach or communicate science. Considering that it was mentioned in only one session last year, this is a huge change. Now that Twitter is more of a way of talking than a company, something twitter-like is likely here to stay.
Diversity
We started and ended the conference with sessions on diversity in science online and offline, both of which got high marks from everyone who attended. Here, I only want to note that out of 269 people who registered at the door (or did not, but were reliably spotted by two or more witnesses, or locals who did not register but crashed the meeting and we know them well), 133 were men and 134 were women. This is a rare parity at tech, bloggy or science conferences. And it felt that way – comfortable for all. Also, we had 10 attendees younger than 18 and, if I am correct, two older than 70 – and every possible age in-between.
Overarching Themes
It is interesting how the conference evolved over the past four years. The first meeting was all about blogging – all sessions and conversations were about the way people use blogs to do, teach and communicate science. Most of the people gathered back in 2007 were bloggers. But things have changed over time…more about it in a second.
The 2008 meeting started expanding from blogs to other stuff scientists and those interested in science do online. If there was a theme, it was Activism – how to use blogs and other online tools to push back against enemies of reason and also how to influence the influentials (especially elected officials at various levels).
The 2009 meeting had one huge underlying theme – that of Power. But the other big theme then was Openness. We talked a lot about everything Open – from Open Notebook Science to Open Access Publishing. It was an appropriate year to have a lot of focus on it as this was the time when Open Access movement made huge strides, many scientists first became aware of Open Access and what it is, and many scientists were first made aware of the bankruptcy of the Impact Factor.
Since then, the emotions about it have calmed down a little bit – there is a sense that “good guys won” (the NIH open access mandate, the domino effect of Harvard’s OA mandate, huge growth in participation in OA week around the globe, enormous growth in the number of OA journals, etc.) and that we can now talk calmly about building the future system together. A number of people, including representatives of Nature and Elsevier, told me (or tweeted or mentioned in their feedback forms) that they really liked the session led by Pete Binfield on article-level metrics – instead of being combative (PLoS rulz!), it was a constructive discussion of strategies for moving forward all together to make the publishing world better adapted to the modern world.
As ScienceOnline is a modified Unconference – see this post for the detailed explanation of how we build the program – the content tends to reflect the composition of the meeting. First two years, the meeting was dominated by bloggers. Third by Open Access Evangelists. This one? Three groups, really: the ocean bloggers (not so much numerically as the fact that they are highly visible…..er, audible), the librarians, and, biggest cohort of all: science and medical journalists and writers.
As the Program grew on a wiki page with potential attendees suggesting sessions and volunteering to lead them, this year’s Program matched the profile of the group. Thus, there is no surprise that a couple of sessions, a couple of demos and an Ignite talk had marine themes. Likewise for sessions about librarianship and databases and reference managers.
But what was noticeable was lots and lots of sessions on the media and journalism. Which is perfectly fitting – 2009 was a year of great turmoil in the world of journalism, including science/medical journalism, with newspaper folding, journalists losing jobs and vigorous discussions about the future media ecosystems occuring throughout the year in various online and offline venues. This WAS the perfect year to have a focus on the media.
For the best coverage of the media ‘track’, see Ed Yong before and after, Christine Ottery before and after, David Dobbs, DeLene Beeland before and after and some more after, Andria Krewson, Sabine Vollmer, Ryan Somma, Janet Stemwedel and Eric Johnson.
What about my prediction that this year’s theme will be Trust? I think it was right. The word was used over and over again in many sessions, in various meanings, but mainly in the context of journalists and scientists (especially blogging scientists) eyeing each other with semi-suspicion and trying to (re)learn to trust each other. This world is changing, and the establishment of trust between these two formerly warring parties is a necessity. It was great to see the entire journalistic track start with Ed Yong opening his session with “Bloggers vs. Journalists is over – we will not talk about that, let’s move on”. And that sentiment remained with us throughout the meeting (perhaps meeting face-to-face engenders trust). During the provocative and excellent session on “Which scientists should journalists trust?” led by Connie St.Louis and Christine Ottery (who shared with me the 1st prize for Bounciest Happiest Energizer Bunny of #scio10), some outside onlookers on Twitter tried to inject the bloggers vs. journalists division into the conversation (something like “but bloggers can never be journalists”) and it was wonderful to see several people in the room politely (or is it civilly?) counter that (OK, OK, it was delicious to watch the wicked smack-downs by the likes of Ed Yong and Brian Switek).
But there are several other themes this year besides Trust, Bloggers vs. Journalists is over, and Importance of Meatspace and they are all related to each other in a way. One of them we shall perhaps call Integration.
Blog is software. If you search my blog for that phrase (or similar) you will find several instances of it. I was happy to see that phrase quoted on Twitter in another session and also happy to see Carl Zimmer repeat it at the beginning of his session. Blog is a tool, a medium. Like every other medium, it affects the form and format and the message. But it is not in itself a different means of communication. Corporate blogs and science blogs and political action blogs and personal blogs all have very different tones. It doesn’t matter.
One reason this meeting did not feel like a bloggers’ conference, unlike the previous ones, is that most people in attendance have by now gone beyond the idea of ‘being a blogger’, whatever that means. Whatever one does – scientific research, or science publishing, or science teaching, or science journalism, or freelance writing, etc, these days one needs to use a whole plethora of tools, only one of which is a blogging software. To succeed in this business, one cannot be a single-medium person any more. One has to use both the traditional channels of communication – books, scientific journals, popular science magazines, newspapers, photography, art, radio, television, movies – and the new communications technologies – websites, blogs, wikis, Twitter, FriendFeed, Facebook, photoshop, art Tablets, podcasts, videos, etc. and combine most or all of them in one’s work.
Which explains why there was so much energy in the dialogue between people whose background is in Old Media and those who first entered the world of communication in the New Media, usually as bloggers. The two groups were eager to learn from each other how to best use each other’s tools. This may also explain why there was so much interest in the sessions about the book business – scientists who entered communication by becoming bloggers are now looking to expand into some of the more traditional realms because the non-techie segments of the population still use (and trust more!) the traditional channels. The Web-savvy scientists eager to improve the way science is reported, explained and presented in the media, in order to make the society more scientific, are intent on penetrating the traditional media – from books to newspapers to radio to Hollywood – in order to improve it from within by bringing their expertise into it.
Another big difference between previous three meetings and this one, in my opinion, is a switch from pure communication to Engagement. What do I mean by that? Everything we discussed in the previous years was geared toward a goal of making the information available and making sure people get it – that is a one-to-many approach: we are the experts, you are the non-experts, listen to us! This year, everyone was exploring the ways to get people engaged in some action. We had several sessions and demos covering a whole range of Citizen Science projects, in which communication tools were not just a way for scientists to talk to an audience, but for the public to get engaged in science – to do science. The scientists and journalists were exploring ways to engage each other more deeply (the Talking Trash session was a great example of this), Anil Dash was trying to figure out how to get people engaged in giving expertise to the government and affect policy, Nate Silver and Arikia Millikan were interested in scientifically studying how to best engage with people online, etc.
Most clear example of this shift between the past years and this one was the session by Miss Baker and her students. Last year she was teaching in a high school in Baltimore and her eight students from there came to the conference to tell us how they use online tools. That is, how they find, read and evaluate the scientific information we put out there – a more-or-less passive reading process. This year, students from her new school in Staten Island did something completely different: they showed us how they do stuff online, how they study the Web, how they design educational materials, make videos, run blogs, design computer games, and what criteria they find important in estimating the potential success of their projects with their peers. I don’t think these kids are any different from the kids we saw last year, or that they grew up in much different environments. I think it is just the case that the world of the Web has changed in the past year in a way that crossed over a threshold from expert=>non-expert communication (with potential for feedback in comments, sure) to a ‘we can all help each other become experts’ way of thinking and doing things, where experts are there more in an advisory role than as lecturers.
What will be the theme next year? Who knows, too early to tell. But it will be affected by the composition of the registrants, so start thinking now and recruiting your friends and colleagues now.
The Unconference
Our conference is growing (roughly 130, 170, 210 and 270 people attended them in the past four years respectively). We like it that way. We like to bring in fresh blood, not just have a reunion each year. But this also means that many of the n00bs at the meeting have never experienced an Unconference before. Some instantly fall in love with the format. But others find its perceived lack of structure uncomfortable (and pick Keynote, workshops, Ignite and demos as their faves in the feedback form). When I hear a complaint that the ‘audience hijacked the session from the moderator’ I think to myself “Great – that session was in the true unconference spirit”.
It is the job of the audience to NOT let the person on stage drone on. This is why the people on the stage are called moderators, not speakers. Most of our audience grokked this fast, and of course many have already been to unconferences before, either ours, or Scifoo, or various other Bar Camps etc. This year’s sessions, at least those I saw myself, were all highly participatory. And we want them that way.
The trick is how to get new people to understand the concept beforehand and embrace it. How to make sure that all the moderators are up to speed with the concept and able to function as moderators in it? What can be done online in advance to help that transition? How can the conference begin so everyone ‘gets it’ fast? Suggestions are welcome.
The fact that the conference is growing so fast means there are now many people who have attended it at least once and, perhaps with this experience under their belts, can moderate sessions next year. We hope that over the years the unconference format becomes so ubiquitous at conferences of all kinds that nobody will be surprised by it any more.
Plans for the Future
Yes, we have started planning already 😉
The first big question is growth. There were 267 people here this year. There were 168 on the waitlist (though some of these managed to get in, but most did not). There is a huge interest in attending future meetings. What do we do? How big can the conference get before it loses its fun and intimate atmosphere? If we allow it to grow, where do we do it? We love Sigma Xi – it is so….scientific! Would a new venue that can hold more people be as nice?
As I said at the Friday event, before Michael Specter’s talk, we are not moving the conference to another town. There are good reasons we want to have this meeting permanently in the Triangle area: the incredible scientific community and an incredible online community, plus infrastructure and….well, I don’t want to move 😉
People who want to organize a ‘franchise’ elsewhere should be free to do so – just contact us if you want to tap into our experience and expertise in organizing such an event. The ScienceOnline London version of the event is already going strong, planning for the third meeting this June. In 2011, there will be ScienceOnline Belgrade in Serbia. Anyone else who wants to organize it somewhere else, let us know.
Timing? We traditionally do this during the MLK, Jr weekend mainly because it is the time when the smallest number of other (scientific, skeptical, techie, etc.) meetings are taking place in any given year. But we will re-evaluate this – moving the conference to a later date, or to workdays instead of weekend, are ideas on the table for us to think about.
Thanks to everyone who has already filled the feedback form – we will read and re-read and analyze these carefully. We do it every year and use your feedback to make the next event even better. Stay in touch.

Fenella Saunders interview at ScienceOnline2010 (video)

ScienceOnline2010 – interview with me (video)


Thanks, Ernie Hood!

ScienceOnline2010 video mashup by Miss Baker and students

Jessica Ricco at #scio10 (video)

#scio10 – Nate Silver and Arikia Millikan after their session on Web Science (video)

ScienceOnline2010 – Sights & Sounds (video)

Clock Quotes

Times of luxury do not last long, but pass away very quickly; nothing in this world can be long enjoyed.
– Siddhartha Gautama

#scio10: Salina Interviews Beth Beck from NASA (video)

Stacy Baker’s students got a Flip camera and did a bunch of brief video interviews of ScienceOnline2010 participants. Here’s one of them:

Chris Brodie & Russ Campbell interview at ScienceOnline2010

Clock Quotes

Time is never wasted when you’re wasted all the time.
– Catherine Zandonella

Let us know how was ScienceOnline2010 for you

If you have participated in ScienceOnline2010 (including virtually), please let us know the good and the bad about it and help us make the next year’s event even better. Just go to this online form and fill it. Give us details. Every year we carefully study your responses and incorporate much of your ideas and critiques in the planning for the next event.
Thanks

Christopher Perrien interview at ScienceOnline2010

Chris Perrien interviewed by Ernie Hood about ScienceOnline2010 and Science In The Triangle:

Video interview with David Kroll and Damond Nollan at ScienceOnline2010

Today’s carnivals

The Giant’s Shoulders #19 is up on The Renaissance Mathematicus
The new Scientia Pro Publica is up on Deep Thoughts and Silliness
Skeptics Circle #128 is up on Ionian Enchantment
Friday Ark #278 is up on Modulator

Awesome video interview with Anton Zuiker at ScienceOnline2010

Anton, interviewed in front of Sigma Xi by Ernie Hood:

Clock Quotes

It is a commonplace observation that work expands so as to fill the time available for its completion.
– C. Northcote Parkinson

Clock Quotes

Mark how fleeting and paltry is the estate of man: yesterday in embryo, tomorrow a mummy or ashes. So for the hair’s breadth of time assigned to thee live rationally, and part with life cheerfully, as drops the ripe olive, extolling the season that bore it and the tree that matured it.
– Marcus Aurelius

Clock Quotes

Sometimes when I consider what tremendous consequences come from little things – I am tempted to think there are no little things.
– Bruce Barton

Clock Quotes

If you spend more time asking appropriate questions rather than giving answers or opinions, your listening skills will increase.
– Brian Koslow

ScienceOnline2010 iPhone app

Yes, we have it.
You can check out the app in iTunes here.
Features include a schedule quick-reference, information about the conference as a whole, and a brief nod to the participating sponsors.
The app is named ‘SciOnline10’ due to the (visible) naming restrictions on the device. Searching for Science, Online, or ScienceOnline2010 (or the app name, SciOnline10) will find it on the App Store if the link doesn’t work for you.

New and Exciting in PLoS ONE

There are 20 new articles in PLoS ONE today. As always, you should rate the articles, post notes and comments and send trackbacks when you blog about the papers. You can now also easily place articles on various social services (CiteULike, Mendeley, Connotea, Stumbleupon, Facebook and Digg) with just one click. Here are my own picks for the week – you go and look for your own favourites:
Spiny Mice Modulate Eumelanin to Pheomelanin Ratio to Achieve Cryptic Coloration in ‘Evolution Canyon,’ Israel:

Coat coloration in mammals is an explicit adaptation through natural selection. Camouflaging with the environment is the foremost evolutionary drive in explaining overall coloration. Decades of enquiries on this topic have been limited to repetitive coat color measurements to correlate the morphs with background/habitat blending. This led to an overwhelming endorsement of concealing coloration as a local phenotypic adaptation in animals, primarily rodents to evade predators. However, most such studies overlooked how rodents actually achieve such cryptic coloration. Cryptic coloration could be attained only through optimization between the yellow- to brown-colored “pheomelanin” and gray to black-colored “eumelanin” in the hairs. However, no study has explored this conjecture yet. “Evolution Canyon” (EC) in Israel is a natural microscale laboratory where the relationship between organism and environment can be explored. EC is comprised of an “African” slope (AS), which exhibits a yellow-brownish background habitat, and a “European” slope (ES), exhibiting a dark grayish habitat; both slopes harbor spiny mice (Acomys cahirinus). Here, we examine how hair melanin content of spiny mice living in the opposing slopes of EC evolves toward blending with their respective background habitat. We measured hair-melanin (both eumelanin and pheomelanin) contents of 30 spiny mice from the EC using high-performance liquid chromatography (HPLC) that detects specific degradation products of eumelanin and pheomelanin. The melanin pattern of A. cahirinus approximates the background color of the slope on which they dwell. Pheomelanin is slightly (insignificantly) higher in individuals found on the AS to match the brownish background, whereas individuals of the ES had significantly greater eumelanin content to mimic the dark grayish background. This is further substantiated by a significantly higher eumelanin and pheomelanin ratio on the ES than on the AS. It appears that rodents adaptively modulate eumelanin and pheomelanin contents to achieve cryptic coloration in contrasting habitats even at a microscale.

Non-Additive Effects of Genotypic Diversity Increase Floral Abundance and Abundance of Floral Visitors:

In the emerging field of community and ecosystem genetics, genetic variation and diversity in dominant plant species have been shown to play fundamental roles in maintaining biodiversity and ecosystem function. However, the importance of intraspecific genetic variation and diversity to floral abundance and pollinator visitation has received little attention. Using an experimental common garden that manipulated genotypic diversity (the number of distinct genotypes per plot) of Solidago altissima, we document that genotypic diversity of a dominant plant can indirectly influence flower visitor abundance. Across two years, we found that 1) plant genotype explained 45% and 92% of the variation in flower visitor abundance in 2007 and 2008, respectively; and 2) plant genotypic diversity had a positive and non-additive effect on floral abundance and the abundance of flower visitors, as plots established with multiple genotypes produced 25% more flowers and received 45% more flower visits than would be expected under an additive model. These results provide evidence that declines in genotypic diversity may be an important but little considered factor for understanding plant-pollinator dynamics, with implications for the global decline in pollinators due to reduced plant diversity in both agricultural and natural ecosystems.

Clock Quotes

Nothing of importance is ever achieved without discipline. I feel myself sometimes not wholly in sympathy with some modern educational theorists, because I think that they underestimate the part that discipline plays.
– Bertrand Russell

Snake-mimicking Moth

Leptiric i zmije.jpg
[copyright Miroslav Midanovic]

ScienceOnline2010 – introducing the participants


A couple of last-minute cancellations allowed us to bring in a few more people from the (enormous!) waitlist. Here are the lucky, under-the-wire, last-day registrants:
Chris Mooney is a science journalist and writer. He blogs on The Intersection and tweets.
Anne Frances Johnson is a Freelance Science Writer, a graduate of the The Medical and Science Journalism Program at UNC.
Kevin Smith is the Scholarly Communications Officer at Perkins Library at Duke University and he blogs on Scholarly Communications @ Duke.
Jennifer Brock is a science teacher at Martin Middle School in Raleigh.
Susan Booker is the News Editor for Environmental Health Perspectives. And she is on Twitter.

Big Question: Feast or famine? (video)

Medicine at ScienceOnline2010

scienceonline2010logoMedium.jpgOf course, our conferences always attract a nice contingent of physicians, nurses, medical journalists, biomedical researchers and med-bloggers, so it is not surprising that ScienceOnline2010 will also have sessions devoted to the world of medicine. Check them out:
Medicine 2.0 and Science 2.0–where do they intersect? – Walter Jessen
Description: Medicine 2.0 applications, services and tools are defined as Web-based services for healthcare consumers/patients, health professionals and biomedical researchers that use Web 2.0 technologies and/or semantic web and virtual reality approaches to enable and facilitate (1) social networking; (2) participation; (3) apomediation (guidance generated and available from peripheral mediators); (4) openness; and (5) collaboration within and between these user groups for the purposes of maintaining and/or restoring human health. How are these themes being applied in scientific research? What are the reasons some themes are better applied than others? How are researchers integrating Science 2.0 tools into their workflows? Do they offer an immediate benefit? Where could there be improvement? What are the social and cultural obstacles to widespread adoption of Medicine 2.0 and Science 2.0? Discuss here.
Privacy, ethics, and disasters: how being online as a doctor changes everything – Pal MD and Val Jones.
Description: We all know that there are potential pitfalls to having a prominent online presence, but for physicians, the implications affect more than just themselves. How should doctors and similar professionals manage their online life? What are the ethical and legal implications? Discuss “here”:http://www.scienceonline2010.com/index.php/wiki/Privacy_ethics_and_disasters/
Medical journalism – Walter Jessen and Karl Leif Bates
Description: It could be argued that healthcare already has a “killer app” – search. According to research by the Pew Internet & American Life Project, 61% of us look online for medical information. In an age of horizontal information distribution and social networks, what sort of medical information, disinformation and misinformation does one find? How do we fight publishers of medical information that is inaccurate, misleading or wrong? Is a website sponsored by a drug company more reliable than one sponsored by a disease group? Can a University PR site be trusted? How about an M.D or Ph.D. that blogs on medicine or medical research? What about a federal agency such as the FDA or CDC? What difference does a seal of approval from the Health on the Net Foundation (HONcode) make if Google’s algorithms don’t value it? Discuss here.

New and Exciting in PLoS ONE

There are 42 new articles in PLoS ONE today. As always, you should rate the articles, post notes and comments and send trackbacks when you blog about the papers. You can now also easily place articles on various social services (CiteULike, Mendeley, Connotea, Stumbleupon, Facebook and Digg) with just one click. Here are my own picks for the week – you go and look for your own favourites:

Continue reading

Clock Quotes

Whenever people say we mustn’t be sentimental, you can take it they are about to do something cruel. And if they add, we must be realistic, they mean they are going to make money out of it.
– Brigid Antonia Brophy

Announcing the posts that will be published in The Open Laboratory 2009!

The time has come….the moment many of you have been waiting for, for months!
The most amazing 2009 guest editor Scicurious and I are ready to announce the 50 posts that have made it through a grueling judging process to emerge as winners to be included in the Open Laboratory 2009, the anthology of the best writing on science blogs of the past year.
Out of 760 posts, all of amazing quality (we could have collected something like ten anthologies, all good), the survivors of all the rounds, the posts that will actually get printed on physical, dead-tree paper, are:
Breastatistics, by Dr. Jekyll and Mrs. Hyde.
Beyond Energy, by Tom Paine’s Ghost.
Making the Archeological Record, by Aarvarchaeology.
I want to be Carl Sagan but Can’t by NeuroDojo.
The Weird History of Vaccine Adjuvants by Neuron Culture.
Why you didn’t really want the job, the Waiting for Godot Edition at The Oyster’s Garter.
Cosmopithicus at The Beagle Project.
Blood and brains – can vampires survive a zombie apocalypse? by Southern Fried Science.
Pressure to Preserve by the Culture of Chemistry.
Bittersweet, from Beyond the Short Coat.
How research saved the large blue butterfly, from Not Exactly Rocket Science.
How science reporting works, from Saturday Morning Breakfast Cereal.
Good Head (Don’t worry, it’s about beer!) from Bayblab.
Brain and behavior of dinosaurs, from Neurophilosophy.
The Origin of Big from the Loom.
Stripped, part II, the Aquiline Nose, by Anna’s Bones.
Male chauvinist chimps or the meat market of public opinion? from The Primate Diaries.
Seagulls at Sunset, from Partiallyclipse.
Astronomical art: representing planet earth, from 10 Days of science.
Addiction and the Opponent-Process theory, at Neurotopia.
Academia: slowing down the search for cures? at Respectful Insolence.
It’s official: we really have saved the ozone layer, at Highly Allocthonous.
The Cuttlefish Genome project, by the Digital Cuttlefish.
Why social insects do not suffer from ill effects of rotating and night shift work by Blog Around the Clock.
Does faking amnesia permanently distort your memory? from Cognitive Daily.
Why swine flu is resistance to adamantane drugs by the Scientific Activist.
Betting on the poor boy: whorf strikes back by the Language Log.
A sorry saga, the crumbling cookie from the Mr. Science Show.
The rightful place of the science and the African-American community from the Young Black Professional Guide.
Friday (Isaac) Newton blogging: Monday/Newton+Darwin Edition from the Inverse Square Blog.
The glamour of marine biology from Evolutionary Novelties.
Impediments to dialogue about animal research, parts 2, 3, and 4 from Adventures in Ethics and Science.
What exactly am I ambivalent about, parts 1 and 2 from Ambivalent Academic.
Eye-opening access by Reciprocal Space.
Aspartame and Audrey by Bench Twentyone.
The incredible shrinking genome, at Byte Size Biology.
Genital mimicry, social erections, and spotted hyenas, from Wild Muse.
A squishy topic, by Expression Patterns.
Start seeing micro-inequities by Female Science Professor.
Darwin’s degenerates – evolution’s finest, by Observations of a Nerd.
The first great mammoth, by archy.
In which I ramp up, at Mind the Gap.
Sleep paralysis, from Wired.
Because as we all know, the green party runs the world, by no moods, ads, or cutesy fucking icons.
Deep sea corals and methane seeps, by Deep Sea News.
Maiacetus, the good mother whale, by Laelaps.
More of the science of the influenza “cytokine storm” by Effect Measure.
And The Old World Passed Away… The Geologic History of the Colorado Plateau from Geotripper.
Spermophilus (it’s about squirrels, really!) by Coyote Crossing.
The Grid of Disputation from Cosmic Variance.
Congratulations to all the winners, and to everyone whose posts were submitted over the past year.
We would especially like to thank our distinguished panel of judges – people who had to, in short order, read and evaulate many, many posts and provide us with useful comments we needed in making the final decision. The judges are:
Joshua Rosenau of Thoughts from Kansas and the National Center for Science Education.
Kevin Zelnio of Deep Sea News.
Greg Laden of Greg Laden’s Blog.
Stephanie Zvan of Almost Diamonds.
Comrade Physioprof
Dr. Isis
The Digital Cuttlefish
T. DeLene Beeland of Wild Muse.
Christie Wilcox of Observations of a Nerd.
Suzanne Franks of Thus Spake Zuska.
DrugMonkey
Anne Jefferson and Chris Rowan of Highly Allocthonous.
Brian Switek of Laelaps.
Jean-Claude Bradley of Useful Chemistry.
Peter A. Lipson, MD of White Coat Underground.
Michael D Barton of the Dispersal of Darwin.
Anna Kushnir of Lab Life.
Moheb Costandi of Neurophilosophy.
Revere of Effect Measure.
Liz Borkowski of the Pump Handle.
Carl Feagans of A Hot Cup of Joe
Carel P. Brest van Kempen of Rigor Vitae.
Laurent of Seeds Aside.
GrrlScientist
Ed Yong of Not Exactly Rocket Science
Janet Stemwedel of Adventures in Ethics and Science.
Greg Gbur of Skulls in the Stars
Pamela Gay of Starstryder
Ethan Siegal of Starts with a Bang
Female Science Professor
Ambivalent Academic
Art Kilner of AK’s Rambling Thoughts.
Afarensis
It will take another couple of weeks for all the posts to get edited and ‘typeset’ and for the book to be ready for sale. Watch this blog and Neurotopia for the announcement.
And in the meantime, while waiting, you can go back and re-read (of course you have them already! Don’t you?!) the 2006, 2007 and 2008 editions.

The Weather at ScienceOnline2010

forecast_7day_wral_raleigh-300x225.jpg
At least no snow….

Spider

This one is big:
Pauk i cigare.jpg
[Copyright Miroslav Midanovic]

Doing Science at ScienceOnline2010 – data, search, publishing and putting it all together

scienceonline2010logoMedium.jpg
Of course, this conference would not be itself if it was not full of Open Access evangelists and a lot of sessions about the world of publishing, the data, repositories, building a semantic web, networking and other things that scientists can now do in the age of WWW. This year, apart from journalists/writers, the largest cohort appear to be librarians and information scientists. So it is not surprising to see a number of sessions (and several demos) on these topics, for example:
Repositories for Fun and ProfitDorothea Salo
Description: Why are my librarians bothering me with all this repository nonsense? What’s a repository, and how is it different from a website? What can a repository do for me? Why should I bother with them? Does anybody use them? What’s all this about metadata, anyway? Find out from a real live repository librarian!
Science in the cloud – John Hogenesch
Description: A series of parallel revolutions are occurring in science as data, analysis, ideas, and even scientific manuscript authoring are moving away from the desktop and into the cloud. In this session we will focus on science and the cloud starting with the concept of Open Access, moving to cloud-based computation and its use cases, and how new efforts are bringing cloud approaches to the entire authorship and review process. Discuss here.
Shakespeare wasn’t a semantic web guy – Jonathan Rees
Description: That which we call a rose, by any other name, wouldn’t be identified by a computer as a rose. This talk will go through the Shared Name initiative which promotes community-wide use of shared names for records from public databases. The goal is to have a significant effect on the practice of bioinformatics by making it easier to share and link data sets and tools across projects. Selecting and maintaining names is a serious capacity building problem for moving the RDF world from the hacker and hobbyist community to the regular user. And a growing body of experience emphasizes that for any solution to be generally adopted, it must not only be technically sound, but also serve and empower the community of users. Discuss here.
Medicine 2.0 and Science 2.0–where do they intersect? – Walter Jessen
Description: Medicine 2.0 applications, services and tools are defined as Web-based services for healthcare consumers/patients, health professionals and biomedical researchers that use Web 2.0 technologies and/or semantic web and virtual reality approaches to enable and facilitate (1) social networking; (2) participation; (3) apomediation (guidance generated and available from peripheral mediators); (4) openness; and (5) collaboration within and between these user groups for the purposes of maintaining and/or restoring human health. How are these themes being applied in scientific research? What are the reasons some themes are better applied than others? How are researchers integrating Science 2.0 tools into their workflows? Do they offer an immediate benefit? Where could there be improvement? What are the social and cultural obstacles to widespread adoption of Medicine 2.0 and Science 2.0? Discuss here.
Scientists! What can your librarian do for you? – Stephanie Willen Brown and Dorothea Salo
Description: Find free, scholarly, science stuff on the Internet, via your public or state library, or on the “free Web.” Learn tips & tricks for getting full-text science research at all levels, through resources like DOAJ and NC Live (for those with a North Carolina library card; other states often offer free resources to library card holders). Find out about some options for storing science material at your academic institution’s Institutional Repository. We will also talk about the broader access to material stored in institutional repositories and elsewhere on the Web. Discuss here.
Open Access Publishing and Freeing the Scientific Literature (or Why Freedom is about more than just not paying for things) – Jonathan Eisen
Description: Open Access (OA) publishing in science has and continues to spread. We will discuss a variety of issues relating to OA publishing including different types of OA, why “open” and “free (as in no cost)” mean different things, the latest government and university mandates on OA publishing, financial aspects of OA, and the interdependence of OA and other forms of open science. Discuss here.
Online Reference Managers – John Dupuis and Christina Pikas moderating, with Kevin Emamy, Jason Hoyt, Trevor Owens and Michael Habib (Scopus) in the ‘hot seats’.
Description: Reference managers, sometimes called citation managers or bibliography managers, help you keep, organize, and re-use citation information. A few years ago, the options were limited to expensive proprietary desktop clients or BibTeX for people writing in LaTeX. Now we’ve got lots of choices, many that are online, support collaboration and information sharing, and that work with the authoring tools you use to write papers. In this session we’ll hear from representatives of some of these tools and we’ll talk about the features that make them useful. Together we will discuss some tips and tricks, best practices and maybe even get into upcoming features, wish lists and the future of citation management software. Discuss here.
Earth Science, Web 2.0+, and Geospatial Applications – Jacqueline Floyd and Chris Rowan
Description: We will discuss online and mobile applications for earth science research, including solid earth, ocean, and atmosphere subtopics. Current topics planned for discussion are Google Earth for geospatial applications, iPhone and other mobile applications, collaboration tools such as Google Wave, and cloud computing platforms such as Amazon’s EC2 for computationally intensive applications such as seismic tomography or climate modeling. Also, we’ll discuss web analytics: defining and measuring what makes a science website or online application successful. Discuss here.
Open Access and Science Career Hurdles in the Developing world – Tatjana Jovanovic-Grove and Jelka Crnobrnja Isailovic
Description: Changes in a country in neverending transition are affecting deeply both PhD students and qualified researchers. To enter or to stay in Serbian scientific community depends only on participation in journals positioned on SCI list. Moreover, ranking system is not stable, it could be changed quickly upon decision of small group of scientists already established as tenured. More than thinking about challenging topics in science that are worthy to work on, scientists in Serbia should calculate what and where to publish with the minimum of costs in order to reach as high score as possible, and ensure payment for the following months. Changing ranking system amongst scientists, as well Bologna accords implementation in practice: what are thoughts amongst students and researchers at two institutions in Serbia: IBISS and Faculty of Natural Sciences University of Nis. What are the guidelines to help overcoming obstacles in this process? Are promotion and approval of the Open Access journals the best helping hands in overcoming obstacles and bringing Serbian science where it belongs? The results of discussed session ScienceOnline in 2009 and points of view of researchers in natural sciences. Importance of the short time in publishing in open science with urgency of protecting endangered species and habitats. Discuss here.
Article-level metricsPeter Binfield
Description: In an attempt to measure the article, as opposed to the journal it is published in, PLoS has recently implemented a suite of article-level metrics on all PLoS Articles. These metrics include online usage, citations, social bookmarks, comments, notes, ratings, and blog coverage. This presentation will go into the motivation for this program; provide information on how it has been implemented; and cover plans for future enhancements. Discuss here.
Open Notebook Science – Jean-Claude Bradley, Steven J. Koch and Cameron Neylon
Description: The sharing of experimental data under near real-time conditions has a place in the scientific process. Some recent examples in chemistry will be detailed using social software such as blogs, wikis and public Google Spreadsheets. In one example the utility of sharing solubility measurements not available from the traditional scientific literature will be detailed. In another case work published in the peer-reviewed literature was evaluated extremely quickly by the blogosphere to resolve some controversial claims. The full sharing of experimental details was essential to resolving the issue. See here for more information on Open Notebook Science. Discuss here.

New and Exciting in PLoS Biology and PLoS Medicine

Evolving Towards Mutualism:

Plants, and all other living things, require nitrogen for growth; it is an essential component of nucleic acids and proteins. Although air is mostly nitrogen, this gaseous form is inaccessible to plants and must be fixed into ammonium to render it biologically relevant. Soil bacteria called rhizobia fix nitrogen, but to do this they must first take up residence inside the roots of legumes like pea, alfalfa, clover, and soybean.

Experimental Evolution of a Plant Pathogen into a Legume Symbiont:

Most leguminous plants can form a symbiosis with members of a group of soil bacteria known as rhizobia. On the roots of their hosts, some rhizobia elicit the formation of specialized organs, called nodules, that they colonize intracellularly and within which they fix nitrogen to the benefit of the plant. Rhizobia do not form a homogenous taxon but are phylogenetically dispersed bacteria. How such diversity has emerged is a fascinating, but only partly documented, question. Although horizontal transfer of symbiotic plasmids or groups of genes has played a major role in the spreading of symbiosis, such gene transfer alone is usually unproductive because genetic or ecological barriers restrict evolution of symbiosis. Here, we experimentally evolved the usually phytopathogenic bacterium Ralstonia solanacearum, which was carrying a rhizobial symbiotic plasmid into legume-nodulating and -infecting symbionts. From resequencing the bacterial genomes, we showed that inactivation of a single regulatory gene allowed the transition from pathogenesis to legume symbiosis. Our findings indicate that following the initial transfer of symbiotic genes, subsequent genome adaptation under selection in the plant has been crucial for the evolution and diversification of rhizobia.

The Global Health System: Strengthening National Health Systems as the Next Step for Global Progress:

Three circumstances make the present moment unique for global health. First, health has been increasingly recognized as a key element of sustainable economic development [1], global security, effective governance, and human rights promotion [2]. Second, due to the growing perceived importance of health, unprecedented–albeit still insufficient–sums of funds are flowing into this sector [3]. Third, there is a burst of new initiatives coming forth to strengthen national health systems as the core of the global health system and a fundamental strategy to achieve the health-related Millennium Development Goals.
In order to realize the opportunities offered by the conjunction of these unique circumstances, it is essential to have a clear conception of national health systems that may guide further progress in global health. To that effect, the first part of this Policy Forum examines some common misconceptions about health systems. Part two explains a framework to better understand this complex field. Finally, I offer a list of suggestions on how to improve national health system performance and what role global actors can play.

‘Working the System’–British American Tobacco’s Influence on the European Union Treaty and Its Implications for Policy: An Analysis of Internal Tobacco Industry Documents:

The primary goal of public health, the branch of medicine concerned with the health of communities, is to improve lives by preventing disease. Public-health groups do this by assessing and monitoring the health of communities, by ensuring that populations have access to appropriate and cost-effective health care, and by helping to formulate public policies that safeguard human health. Until recently, most of the world’s major public-health concerns related to infectious diseases. Nowadays, however, many major public-health concerns are linked to the goods made and marketed by large corporations such as fast food, alcohol, tobacco, and chemicals. In Europe, these corporations are regulated by policies drawn up both by member states and by the European Commission, the executive organ of the European Union (EU; an economic and political partnership among 27 democratic European countries). Thus, for example, the tobacco industry, which is widely recognized as a driver of the smoking epidemic, is regulated by Europe-wide tobacco control policies and member state level policies.