Clock Quotes

Sometimes the best gain is to lose.
– George Herbert

Last call for submissions for ‘Praxis’ and ‘The Giants’ Shoulders’

Only two ways left to submit!
Next edition of The Giant’s Shoulders will be on May 15th on Curving Normality. History of science, ‘classical’ papers? If you have blogged about those over the past 30 days, please send in your entry.
I understand that the next edition of Praxis will also be on May 15th on The Lay Scientist. Next month, it will be on Quiche Morraine and in July here on A Blog Around The Clock – we need hosts for after that! Let Martin or me know if you are interested.

Laziness in reporting – what’s new?

You may have heard about a recent Wikipedia hoax:

A WIKIPEDIA hoax by a 22-year-old Dublin student resulted in a fake quote being published in newspaper obituaries around the world.
The quote was attributed to French composer Maurice Jarre who died at the end of March.
It was posted on the online encyclopedia shortly after his death and later appeared in obituaries published in the Guardian, the London Independent, on the BBC Music Magazine website and in Indian and Australian newspapers

Yup. Journalists check their sources carefully. Especially the despised untrustworthy Wikipedia, only a notch above the unruly mobs of bloggers.
But that’s not new.
Back in 1899, there was no Wikipedia, but there were Dictionaries. Trustworthy. Except when they are not. Pwnd.

New and Exciting in PLoS ONE

There are 18 new articles in PLoS ONE today. As always, you should rate the articles, post notes and comments and send trackbacks when you blog about the papers. You can now also easily place articles on various social services (CiteULike, Connotea, Stumbleupon, Facebook and Digg) with just one click. Here are my own picks for the week – you go and look for your own favourites:
The Abdominal Circulatory Pump:

Blood in the splanchnic vasculature can be transferred to the extremities. We quantified such blood shifts in normal subjects by measuring trunk volume by optoelectronic plethysmography, simultaneously with changes in body volume by whole body plethysmography during contractions of the diaphragm and abdominal muscles. Trunk volume changes with blood shifts, but body volume does not so that the blood volume shifted between trunk and extremities (Vbs) is the difference between changes in trunk and body volume. This is so because both trunk and body volume change identically with breathing and gas expansion or compression. During tidal breathing Vbs was 50-75 ml with an ejection fraction of 4-6% and an output of 750-1500 ml/min. Step increases in abdominal pressure resulted in rapid emptying presumably from the liver with a time constant of 0.61±0.1SE sec. followed by slower flow from non-hepatic viscera. The filling time constant was 0.57±0.09SE sec. Splanchnic emptying shifted up to 650 ml blood. With emptying, the increased hepatic vein flow increases the blood pressure at its entry into the inferior vena cava (IVC) and abolishes the pressure gradient producing flow between the femoral vein and the IVC inducing blood pooling in the legs. The findings are important for exercise because the larger the Vbs the greater the perfusion of locomotor muscles. During asystolic cardiac arrest we calculate that appropriate timing of abdominal compression could produce an output of 6 L/min. so that the abdominal circulatory pump might act as an auxiliary heart.

Using Classical Population Genetics Tools with Heterochroneous Data: Time Matters!:

New polymorphism datasets from heterochroneous data have arisen thanks to recent advances in experimental and microbial molecular evolution, and the sequencing of ancient DNA (aDNA). However, classical tools for population genetics analyses do not take into account heterochrony between subsets, despite potential bias on neutrality and population structure tests. Here, we characterize the extent of such possible biases using serial coalescent simulations. We first use a coalescent framework to generate datasets assuming no or different levels of heterochrony and contrast most classical population genetic statistics. We show that even weak levels of heterochrony (~10% of the average depth of a standard population tree) affect the distribution of polymorphism substantially, leading to overestimate the level of polymorphism θ, to star like trees, with an excess of rare mutations and a deficit of linkage disequilibrium, which are the hallmark of e.g. population expansion (possibly after a drastic bottleneck). Substantial departures of the tests are detected in the opposite direction for more heterochroneous and equilibrated datasets, with balanced trees mimicking in particular population contraction, balancing selection, and population differentiation. We therefore introduce simple corrections to classical estimators of polymorphism and of the genetic distance between populations, in order to remove heterochrony-driven bias. Finally, we show that these effects do occur on real aDNA datasets, taking advantage of the currently available sequence data for Cave Bears (Ursus spelaeus), for which large mtDNA haplotypes have been reported over a substantial time period (22-130 thousand years ago (KYA)). Considering serial sampling changed the conclusion of several tests, indicating that neglecting heterochrony could provide significant support for false past history of populations and inappropriate conservation decisions. We therefore argue for systematically considering heterochroneous models when analyzing heterochroneous samples covering a large time scale.

My picks from ScienceDaily

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Clock Quotes

I’m an early bird, and I’m a night owl. So I’m wise and have worms.
– Michael Scott

Today’s carnivals

Encephalon #70 is up on SharpBrains
Carnival of Space #102 is up on TheSpacewriter’s Ramblings
Grand Rounds Vol. 5 No. 34 is up at Health Blogs Observatory
The Carnival of the Green #179 is up on OrganicMania
Friday Ark #242 is up on Modulator

Brown Anole Portrait (video)

Carel P. Brest van Kempen (yes, the artist who did the banner of this blog) submitted this video for a contest. I am not sure how the voting goes, but perhaps lots of visits to this YouTube video are the thing they are looking for:

New and Exciting in PLoS ONE

There are 22 new articles in PLoS ONE today. As always, you should rate the articles, post notes and comments and send trackbacks when you blog about the papers. You can now also easily place articles on various social services (CiteULike, Connotea, Stumbleupon, Facebook and Digg) with just one click. Here are my own picks for the week – you go and look for your own favourites:
Ants Sow the Seeds of Global Diversification in Flowering Plants:

The extraordinary diversification of angiosperm plants in the Cretaceous and Tertiary periods has produced an estimated 250,000-300,000 living angiosperm species and has fundamentally altered terrestrial ecosystems. Interactions with animals as pollinators or seed dispersers have long been suspected as drivers of angiosperm diversification, yet empirical examples remain sparse or inconclusive. Seed dispersal by ants (myrmecochory) may drive diversification as it can reduce extinction by providing selective advantages to plants and can increase speciation by enhancing geographical isolation by extremely limited dispersal distances. Using the most comprehensive sister-group comparison to date, we tested the hypothesis that myrmecochory leads to higher diversification rates in angiosperm plants. As predicted, diversification rates were substantially higher in ant-dispersed plants than in their non-myrmecochorous relatives. Data from 101 angiosperm lineages in 241 genera from all continents except Antarctica revealed that ant-dispersed lineages contained on average more than twice as many species as did their non-myrmecochorous sister groups. Contrasts in species diversity between sister groups demonstrated that diversification rates did not depend on seed dispersal mode in the sister group and were higher in myrmecochorous lineages in most biogeographic regions. Myrmecochory, which has evolved independently at least 100 times in angiosperms and is estimated to be present in at least 77 families and 11 000 species, is a key evolutionary innovation and a globally important driver of plant diversity. Myrmecochory provides the best example to date for a consistent effect of any mutualism on large-scale diversification.

Nest Making and Oxytocin Comparably Promote Wound Healing in Isolation Reared Rats:

Environmental enrichment (EE) fosters attachment behavior through its effect on brain oxytocin levels in the hippocampus and other brain regions, which in turn modulate the hypothalamic-pituitary axis (HPA). Social isolation and other stressors negatively impact physical healing through their effect on the HPA. Therefore, we reasoned that: 1) provision of a rat EE (nest building with Nestlets®) would improve wound healing in rats undergoing stress due to isolation rearing and 2) that oxytocin would have a similar beneficial effect on wound healing. In the first two experiments, we provided isolation reared rats with either EE or oxytocin and compared their wound healing to group reared rats and isolation reared rats that did not receive Nestlets or oxytocin. In the third experiment, we examined the effect of Nestlets on open field locomotion and immediate early gene (IEG) expression. We found that isolation reared rats treated with Nestlets a) healed significantly better than without Nestlets, 2) healed at a similar rate to rats treated with oxytocin, 3) had decreased hyperactivity in the open field test, and 4) had normalized IEG expression in brain hippocampus. This study shows that when an EE strategy or oxytocin is given to isolation reared rats, the peripheral stress response, as measured by burn injury healing, is decreased. The findings indicate an association between the effect of nest making on wound healing and administration of the pro-bonding hormone oxytocin. Further elucidation of this animal model should lead to improved understanding of how EE strategies can ameliorate poor wound healing and other symptoms that result from isolation stress.

The Effect of Adult Aggression on Habitat Selection by Settlers of Two Coral-Dwelling Damselfishes:

Coral-reef fishes experience a major challenge when facing settlement in a multi-threat environment, within which, using settlement cues, they need to select a suitable site. Studies in laboratories and artificial setups have shown that the presence of conspecific adults often serves as a positive settlement cue, whose value is explained by the increased survival of juveniles in an already proven fit environment. However, settlement in already inhabited corals may expose the recruits to adult aggression. Daily observations and manipulation experiments were used in the present study, which was conducted in the natural reef. We revealed differential strategies of settlers, which do not necessarily join conspecific adults. Dascyllus aruanus prefer to settle near (not with) their aggressive adults, and to join them only after gaining in size; whereas Dascyllus marginatus settlers in densely populated reefs settle independently of their adult distribution. Our results present different solutions to the challenges faced by fish recruits while selecting their microhabitat, and emphasize the complexity of habitat selection by the naïve settlers. Although laboratory experiments are important to the understanding of fish habitat selection, further studies in natural habitats are essential in order to elucidate the actual patterns of settlement and habitat selection, which are crucial for the survival of coral-reef fish populations.

On the Origin of Indonesian Cattle:

Two bovine species contribute to the Indonesian livestock, zebu (Bos indicus) and banteng (Bos javanicus), respectively. Although male hybrid offspring of these species is not fertile, Indonesian cattle breeds are supposed to be of mixed species origin. However, this has not been documented and is so far only supported by preliminary molecular analysis. Analysis of mitochondrial, Y-chromosomal and microsatellite DNA showed a banteng introgression of 10-16% in Indonesian zebu breeds. East-Javanese Madura and Galekan cattle have higher levels of autosomal banteng introgression (20-30%) and combine a zebu paternal lineage with a predominant (Madura) or even complete (Galekan) maternal banteng origin. Two Madura bulls carried taurine Y-chromosomal haplotypes, presumably of French Limousin origin. In contrast, we did not find evidence for zebu introgression in five populations of the Bali cattle, a domestic form of the banteng. Because of their unique species composition Indonesian cattle represent a valuable genetic resource, which potentially may also be exploited in other tropical regions.

Kinetic Works (video)


Art by Deb Todd Wheeler

Clock Quotes

Sometimes I wonder if we live life by reliving life, rather than by living life.
– Michael Landon

Hardware or Software: Searching for the Genetic Basis for Biological Diversity

Are you up to date on the hot debate in biology regarding how genes influence evolution? Some scientists contend genes are in the driver’s seat. Others assign more pull to regulatory factors controlling genetic expression. At noon, Wednesday, May 27, come hear Duke biologist Greg Wray explore the importance of it all in a talk entitled “Hardware or Software: Searching for the Genetic Basis for Biological Diversity.”
You may not want to miss this one. After Wray’s talk, Pizza Talk embarks on its traditional three-month summer vacation. The next nine-month series debuts in September.
Sigma Xi Pizza Lunch is free and open to science journalists and science communicators of all stripes. Feel free to forward this message to anyone who might be interested in attending. RSVPs are required (for a reliable slice count) to cclabby AT amsci DOT org.
Directions to Sigma XI:http://www.sigmaxi.org/about/center/directions.shtml

Undergraduate science summer camp at Petnica Science Center

Petnicacrowd.jpgPetnica Science Center has been doing science summer camps for high school graduates and undergrads for 25 years and many of its alumni went on to have good careers in science both in Serbia and abroad:

Petnica Science Center is the biggest and, probably, the oldest independent nonprofit organization for extracurricular science education in SE Europe. Since 1982, Petnica has organized more than 2,500 programs (seminars, workshops, research camps…) for nearly 50,000 students and science teachers in 15 disciplines of science, technology and humanities. Majority of programs are designed for secondary-school students although there are a lot of programs for primary-school pupils, university students and science teachers. Attendants of regular Petnica programs are coming from all countries of former Yugoslavia and all these courses are being realized in Serbian language. However, Petnica occasionally organizes programs (like PI) in English for international participants.

Petnicasmrdi.jpgAfter a decade of wars and sanctions, Serbia has a moderate elected government, nice economic growth and is safe (you can browse my blog for posts related to the area). It is also a huge European center for birding/birdwatching and wildlife. It also needs to recover from a decade of brain-drain and no other scientific institution there is as worthy of support as Petnica. Adventure, science, visiting a beautiful and interesting place – think about it and sign up for their Petnica International summer science on August 2nd to 15th, 2009:

The aim of this program is to enable young scientists to practice scientific research by working on their own research and presenting their results and ideas. Students will also have a chance to attend various theoretical lectures and laboratory exercises, to learn how to use some important software packages and experience work in the field.
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Interested students should fill in the student application form, write a personal statement, and provide two letters of recommendation. The personal statement should list your interests and explain why you would like to attend PI 2009, as well as anything else you think is important for us to know. All registration materials should be submitted by e-mail to pi AT petnica DOT rs no later than May 31, 2009. The program fee – including tuition, learning materials, accommodation, meals, admittance to the recreation center and field trips, is €500. There are no application fees. Also 30 percent of the total number of pupils will be funded by the organizers, and if you need financial support, do not hesitate and contact us.

Petnicasunce.jpgIf you are still hesitant, you should read this ‘Science in School’ article: Learning through research: a Serbian tradition:

Twenty-five years ago, in a village called Petnica, 100 kilometres south-east of Belgrade, an unusual science education centre was founded and soon became a hideaway for many rebellious secondary-school and university students from all over Yugoslavia. The attractive landscape and rich natural resources, such as a canyon, caves and archaeological sites, caught these students’ attention. Even though they were deeply unsatisfied with the formal education system, they were truly enthusiastic about nature and scientific work, and realised there was much more to education than school. Long before Petnica was formally established, some camps were organised for students of Belgrade University and members of a movement called Young Researchers of Serbia. Eventually, they managed to find government support to start an organisation with a few employees, a pile of books and a couple of Spectrum computers. Thanks to their efforts, an extracurricular educational centre was established for future generations of curious minds.
Petnicabiblioteka.jpgSince its beginning in 1982, Petnica Science Center has organised nearly 2300 programmes (seminars, workshops, camps and small conferences) for more than 40 000 secondary-school pupils, university students and teachers interested in science and technology. Today, Petnica is the largest independent, non-profit organisation for out-of-school science education in south-eastern Europe. Programmes at Petnica help students to focus on the scientific method and to write science reports and papers.

Read the whole thing. Then sign up for the summer program.

My picks from ScienceDaily

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Clock Quotes

My Birthday! what a different sound
That word had in my youthful ears;
And how each time the day comes round,
Less and less white its mark appears.

– Thomas Moore

Miss Baker’s students – how to excite teens about science (video)

Miss Baker went to the Two Cultures conference in NYC, and there she showed this video of her students:

43

For a whole year, I knew the answer to the Ultimate Question of Life, the Universe, and Everything. Starting today, I am ignorant again.

Why social insects do not suffer from ill effects of rotating and night shift work?

ResearchBlogging.orgMost people are aware that social insects, like honeybees, have three “sexes”: queens, drones and workers.
Drones are males. Their only job is to fly out and mate with the queen after which they drop dead.
Female larvae fed ‘royal jelly’ emerge as queens. After mating, the young queen takes a bunch of workers with her and sets up a new colony. She lives much longer than other bees and spends her life laying gazillions of eggs continuously around the clock, while being fed by workers.
Female larvae not fed the ‘royal jelly’ emerge as workers.
Workers perform a variety of jobs in the hive. Some are hive-cleaners, some are ‘nurses’ (they feed the larvae), some are queen’s chaperones (they feed the queen), some are guards (they defend the hive and attack potential enemies) and some are foragers (they collect nectar and pollen from flowers and bring it back to the hive).
What most people are not aware of, though, is that there is a regular progression of ‘jobs’ that each worker bee goes through. The workers rotate through the jobs in an orderly fashion. They all start out doing generalized jobs, e.g., cleaning the hive. Then they move up to doing a more specialized job, for instance being a nurse or taking care of the queen. Later, they become guards, and in the end, when they are older, they become foragers – the terminal phase.
This pattern of behavioral development is called “age polyethism” (poly = many, ethism = expression of behavior), or sometimes “temporal polyethism” (image from BeeSpotter):
Age polyethism.jpg
This developmental progression in behavior is accompanied by changes in brain structure, patterns of neurotransmitter and hormone synthesis and secretion, and patterns of gene expression in the central nervous system.
Some years ago (as in “more than ten years ago”) Gene Robinson and his students started looking at daily patterns of activity in honeybees. The workers in their early stages are doing jobs inside the hive, where it is always dark. They clean the hive, take care of the eggs and pupae, and feed the larvae and the queen around the clock. Each individual bee sometimes works and sometimes sleeps, without any semblance of a 24-hour pattern. Different individuals work and sleep at different, apparently random times. The hive as a whole is thus constantly busy – there is always a large subset of workers performing their duties, day and night.
As they get older, they start doing the jobs, like being guards, that expose them to the outside of the hive, thus to the light-dark and temperature cycles of the outside world.
Finally, the foragers only go out during the daytime and have clear and distinct daily rhythms. Furthermore, the foragers have to consult an internal clock in order to orient towards the Sun in their travels, as well as to be able to communicate the distance and location of flowers to their mates in the hive using the ‘waggle dance’. As bees are social insects, it is difficult to keep individuals in isolation for longer periods of time, but it has been done successfully and, in such studies, foragers exhibit both freerunning (in constant darkness) and entrained (in light-dark cycles) circadian rhythms, while younger workers do not.
In the Robinson lab, then PhD student Dan Toma and postdoc Guy Bloch did much of the early and exciting work on figuring out how the rhythmicity develops in individual worker bees as they pass through the procession of ‘jobs’.
In an early study, they measured levels of expression of mRNA of the core clock gene Period (Per). The gene was expressed at low levels and no visible daily rhythm in early-stage workers, but at much higher levels and in a circadian fashion in foragers.
As the levels of expression were measured crudely – in entire bee brains – it was impossible at the time to be sure which of the two potential mechanisms were operating: 1) the celluular clock did not work until the bee became a forager, or 2) the cellular clocks were working, but different cells were not synchronized with each other, producing a collectively arrhythmic output: both as measured by gene expression of the entire brain and as measured by behavior of the live bee.
Either way, the study showed correlation: the appearance of the functional circadian clock coincided with other changes in the brain structure, brain chemistry and bee behavior. They could not say at the time what causes what, or even if the syncronicity of changes was purely coincidental. They needed to go beyond correlation and for that they needed to experimentally change the timing to see if various processes can be dissociated or if they are tightly bound to each other.
And there is a clever way to do this! First, they took some hives and removed all the foragers from it. This disrupted the harmony of the division of labor in the hive – too many cleaners and nurses, but nobody is bring the food home. When that happens, the behavioral development of other workers speeds up dramatically – in no time, some nurses and guards develop into foragers. And, lo and behold, the moment they became foragers, they developed rhythms in behavior and rhythms of the Per gene expression in the brain. So, as the development is accelerated, everything about it is accelerated at the same rate: gene expression, brain structure, neurochemistry, and behavioral rhythmicity.
Nice, but then they did something even better. They removed most of the cleaners and nurses from some hives. Again, the balance of the division of labor was disrupted – plenty of food is arriving into the hive but there is not enough bees inside to take care of that food, process it, feed the larvae, etc. What happened then? Well, some of the foragers went back into the hive and started performing the house-keeping duties instead of flying out and about. And, interestingly, their brain structure and chemistry reverted its development to resemble that of cleaners and nurses. They lost behavioral rhythmicity and started working randomly around the clock. And the rhythm of clock-gene expression disappeared as well.
So, genetic, neural, endocrine, circadian and behavioral changes all go together at all times. Social structure of the colony, through the patterns of pheromones present in the hive, affects the gene expression, brain development and function, and behavior of individual bees. Just like the gene expression and behavioral patterns, the patterns of melatonin synthesis and secretion in honeybee brains is low and arrhythmic in young workers and becomes greater and rhythmic in foragers. With the recent sequencing of the honeybee genome, the potential for future research in honeybee chronobiology looks promising and exciting.
But are these findings generalizable or are they specific to honeybees? How about other species of bees or other social insects, like wasps, ants and termites? Are they the same?
Other species of socials insects have been studied in terms of age polyethism as well. The earliest study I am aware of (let me know if there is an older one) studying behavioral rhytmicity in relation to behavioral development was a 2004 Naturwissenschaften paper by Sharma et al. on harvester ants. In that study, different castes of worker ants exhibited different patterns – some were strongly diurnal, some nocturnal, some had strange shifts in period, and some were arrhythmic. Those with rhythms could entrain to light-dark cycles as well as display freerunning rhythms in constant darkness.
Just last month, a new paper on harvester ants came out in BMC Ecology (Open Access). In it, Ingram et al. show that foragers have circadian rhythms (both in constant darkness and entrained to LD cycles) in expression of Period gene (as well as behavioral rhythms), while ants working on tasks inside the hive do not exhibit any rhythms either in clock-gene expression or in behavior, suggesting that the connection between age polyethism and the development of the circadian clock may be a universal property of all social insects.
We know that in humans, night-shift and rotating-shift schedules are bad for health as the body is in the perpetual state of jet-lag: the numerous clocks in our bodies are not synchronized with each other. We have evolved to be diurnal animals, entrained to environmental light cycles and not traveling over many time zones within hours, or working around the clock. Social insects have evolved a different strategy to deal with the potentially ill effects of shift-work: switch off the clock entirely until one develops far enough that time-keeping becomes a requirement.
Yang, L., Qin, Y., Li, X., Song, D., & Qi, M. (2007). Brain melatonin content and polyethism in adult workers of Apis mellifera and Apis cerana (Hym., Apidae) Journal of Applied Entomology, 131 (9-10), 734-739 DOI: 10.1111/j.1439-0418.2007.01229.x
Sharma, V., Lone, S., Goel, A., & Chandrashekaran, M. (2004). Circadian consequences of social organization in the ant species Camponotus compressus Naturwissenschaften, 91 (8) DOI: 10.1007/s00114-004-0544-6
Ingram, K., Krummey, S., & LeRoux, M. (2009). Expression patterns of a circadian clock gene are associated with age-related polyethism in harvester ants, Pogonomyrmex occidentalis BMC Ecology, 9 (1) DOI: 10.1186/1472-6785-9-7

Clock Quotes

The time is near at hand which must determine whether Americans are to be free or to be slaves.
– George Washington

My picks from ScienceDaily

Continue reading

Clock Quotes

Cats seem to go on the principle that it never does any harm to ask for what you want.
– Joseph Wood Krutch

Open Access. What Open Access? (video)

New and Exciting in PLoS ONE

There are 11 new articles in PLoS ONE today. As always, you should rate the articles, post notes and comments and send trackbacks when you blog about the papers. You can now also easily place articles on various social services (CiteULike, Connotea, Stumbleupon, Facebook and Digg) with just one click. Here are my own picks for the week – you go and look for your own favourites:
To Be or Not to Be a Flatworm: The Acoel Controversy:

Since first described, acoels were considered members of the flatworms (Platyhelminthes). However, no clear synapomorphies among the three large flatworm taxa – the Catenulida, the Acoelomorpha and the Rhabditophora – have been characterized to date. Molecular phylogenies, on the other hand, commonly positioned acoels separate from other flatworms. Accordingly, our own multi-locus phylogenetic analysis using 43 genes and 23 animal species places the acoel flatworm Isodiametra pulchra at the base of all Bilateria, distant from other flatworms. By contrast, novel data on the distribution and proliferation of stem cells and the specific mode of epidermal replacement constitute a strong synapomorphy for the Acoela plus the major group of flatworms, the Rhabditophora. The expression of a piwi-like gene not only in gonadal, but also in adult somatic stem cells is another unique feature among bilaterians. These two independent stem-cell-related characters put the Acoela into the Platyhelminthes-Lophotrochozoa clade and account for the most parsimonious evolutionary explanation of epidermal cell renewal in the Bilateria. Most available multigene analyses produce conflicting results regarding the position of the acoels in the tree of life. Given these phylogenomic conflicts and the contradiction of developmental and morphological data with phylogenomic results, the monophyly of the phylum Platyhelminthes and the position of the Acoela remain unresolved. By these data, both the inclusion of Acoela within Platyhelminthes, and their separation from flatworms as basal bilaterians are well-supported alternatives.

Evolutionary Repercussions of Avian Culling on Host Resistance and Influenza Virulence:

Keeping pandemic influenza at bay is a global health priority. Of particular concern is the continued spread of the influenza subtype H5N1 in avian populations and the increasing frequency of transmission to humans. To decrease this threat, mass culling is the principal strategy for eradicating influenza in avian populations. Although culling has a crucial short-term epidemiological benefit, evolutionary repercussions on reservoir hosts and on the viral population have not been considered. To explore the epidemiological and evolutionary repercussions of mass avian culling, we combine population genetics and epidemiological influenza dynamics in a mathematical model parameterized by clinical, epidemiological, and poultry data. We model the virulence level of influenza and the selection on a dominant allele that confers resistance against influenza [1], [2] in a poultry population. Our findings indicate that culling impedes the evolution of avian host resistance against influenza. On the pathogen side of the coevolutionary race between pathogen and host, culling selects for heightened virulence and transmissibility of influenza. Mass culling achieves a short-term benefit at the expense of long-term detriments: a more genetically susceptible host population, ultimately greater mortality, and elevated influenza virulence.

Odorant-Dependent Generation of Nitric Oxide in Mammalian Olfactory Sensory Neurons:

The gaseous signalling molecule nitric oxide (NO) is involved in various physiological processes including regulation of blood pressure, immunocytotoxicity and neurotransmission. In the mammalian olfactory bulb (OB), NO plays a role in the formation of olfactory memory evoked by pheromones as well as conventional odorants. While NO generated by the neuronal isoform of NO synthase (nNOS) regulates neurogenesis in the olfactory epithelium, NO has not been implicated in olfactory signal transduction. We now show the expression and function of the endothelial isoform of NO synthase (eNOS) in mature olfactory sensory neurons (OSNs) of adult mice. Using NO-sensitive micro electrodes, we show that stimulation liberates NO from isolated wild-type OSNs, but not from OSNs of eNOS deficient mice. Integrated electrophysiological recordings (electro-olfactograms or EOGs) from the olfactory epithelium of these mice show that NO plays a significant role in modulating adaptation. Evidence for the presence of eNOS in mature mammalian OSNs and its involvement in odorant adaptation implicates NO as an important new element involved in olfactory signal transduction. As a diffusible messenger, NO could also have additional functions related to cross adaptation, regeneration, and maintenance of MOE homeostasis.

Cell Lineage of the Ilyanassa Embryo: Evolutionary Acceleration of Regional Differentiation during Early Development:

Cell lineage studies in mollusk embryos have documented numerous variations on the lophotrochozoan theme of spiral cleavage. In the experimentally tractable embryo of the mud snail Ilyanassa, cell lineage has previously been described only up to the 29-cell stage. Here I provide a chronology of cell divisions in Ilyanassa to the stage of 84 cells (about 16 hours after first cleavage at 23°C), and show spatial arrangements of identified nuclei at stages ranging from 27 to 84 cells. During this period the spiral cleavage pattern gives way to a bilaterally symmetric, dorsoventrally polarized pattern of mitotic timing and geometry. At the same time, the mesentoblast cell 4d rapidly proliferates to form twelve cells lying deep to the dorsal ectoderm. The onset of epiboly coincides with a period of mitotic quiescence throughout the ectoderm. As in other gastropod embryos, cell cycle lengths vary widely and predictably according to cell identity, and many of the longest cell cycles occur in small daughters of highly asymmetric divisions. While Ilyanassa shares many features of embryonic cell lineage with two other caenogastropod genera, Crepidula and Bithynia, it is distinguished by a general tendency toward earlier and more pronounced diversification of cell division pattern along axes of later differential growth.

Clock Quotes

One may walk over the highest mountain one step at a time.
– John Wanamaker

My picks from ScienceDaily

Unprecedented Data On Circadian Rhythms Revealed:

Fluctuations in light intensity allow restoring the regularity of circadian rhythms. This is the main conclusion of the work carried out by Javier Buceta, group leader of The.Si.M.Bio.Sys. Group(Theoretical and In Silico Modelling of Biological Systems) from the Co.S.Mo Lab -based at the Barcelona Science Park- and Antoni Díez-Noguera, dean at the Faculty of Pharmacy of the University of Barcelona and group leader of Chronobiology at the Department of Physiology of the said faculty.

Scientists Surprised By Unexpected Emergence Of Periodical Cicadas — Four Years Early:

Periodical cicadas, insects best known for their 17-year long life cycle, are emerging four years early in several Atlantic states. The emergence was first noticed in Greensboro, NC, on Monday and has since been reported in Maryland.
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The cause of these early emergences is unknown, but Kritsky, in a paper to be published in the Proceedings of the Indiana Academy of Science, has found evidence suggesting that mild winters can affect the trees that young cicadas feed upon which in turn interferes with the cicadas’ timekeeping resulting in their emerging early. “This phenomenon might be another biological response to increasing temperatures,” Kritsky said.

‘Gecko Vision’: Key To Future Multifocal Contact Lens?:

Nocturnal geckos are among the very few living creatures able to see colors at night, and scientists’ discovery of series of distinct concentric zones may lead to insight into better cameras and contact lenses. The key to the exceptional night vision of the nocturnal helmet gecko is a series of distinct concentric zones of different refractive powers, according to a new study.

The Open Laboratory 2009 – the submissions so far

OpenLab logo.jpg
Here are the submissions for OpenLab 2009 to date and, as someone who has been through this three times already, I have to say I am impressed both by the number and the quality of submissions to date. And it’s only early May!
As we have surpassed 130 entries, all of them, as well as the “submit” buttons and codes, are under the fold. You can buy the 2006, 2007 and 2008 editions at Lulu.com. Please use the submission form to add more of your and other people’s posts (remember that we are looking for original poems, art, cartoons and comics, as well as essays):

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New and Exciting in PLoS ONE

There are 23 new articles in PLoS ONE today. As always, you should rate the articles, post notes and comments and send trackbacks when you blog about the papers. You can now also easily place articles on various social services (CiteULike, Connotea, Stumbleupon, Facebook and Digg) with just one click. Here are my own picks for the week – you go and look for your own favourites:
Does Sleep Really Influence Face Recognition Memory?:

Mounting evidence implicates sleep in the consolidation of various kinds of memories. We investigated the effect of sleep on memory for face identity, a declarative form of memory that is indispensable for nearly all social interaction. In the acquisition phase, observers viewed faces that they were required to remember over a variable retention period (0-36 hours). In the test phase, observers viewed intermixed old and new faces and judged seeing each before. Participants were classified according to acquisition and test times into seven groups. Memory strength (d′) and response bias (c) were evaluated. Substantial time spent awake (12 hours or more) during the retention period impaired face recognition memory evaluated at test, whereas sleep per se during the retention period did little to enhance the memory. Wakefulness during retention also led to a tightening of the decision criterion. Our findings suggest that sleep passively and transiently shelters face recognition memory from waking interference (exposure) but does not actively aid in its long-term consolidation.

Diurnally Entrained Anticipatory Behavior in Archaea:

By sensing changes in one or few environmental factors biological systems can anticipate future changes in multiple factors over a wide range of time scales (daily to seasonal). This anticipatory behavior is important to the fitness of diverse species, and in context of the diurnal cycle it is overall typical of eukaryotes and some photoautotrophic bacteria but is yet to be observed in archaea. Here, we report the first observation of light-dark (LD)-entrained diurnal oscillatory transcription in up to 12% of all genes of a halophilic archaeon Halobacterium salinarum NRC-1. Significantly, the diurnally entrained transcription was observed under constant darkness after removal of the LD stimulus (free-running rhythms). The memory of diurnal entrainment was also associated with the synchronization of oxic and anoxic physiologies to the LD cycle. Our results suggest that under nutrient limited conditions halophilic archaea take advantage of the causal influence of sunlight (via temperature) on O2 diffusivity in a closed hypersaline environment to streamline their physiology and operate oxically during nighttime and anoxically during daytime.

Hippocampal Lesions Impair Rapid Learning of a Continuous Spatial Alternation Task:

The hippocampus is essential for the formation of memories for events, but the specific features of hippocampal neural activity that support memory formation are not yet understood. The ideal experiment to explore this issue would be to monitor changes in hippocampal neural coding throughout the entire learning process, as subjects acquire and use new episodic memories to guide behavior. Unfortunately, it is not clear whether established hippocampally-dependent learning paradigms are suitable for this kind of experiment. The goal of this study was to determine whether learning of the W-track continuous alternation task depends on the hippocampal formation. We tested six rats with NMDA lesions of the hippocampal formation and four sham-operated controls. Compared to controls, rats with hippocampal lesions made a significantly higher proportion of errors and took significantly longer to reach learning criterion. The effect of hippocampal lesion was not due to a deficit in locomotion or motivation, because rats with hippocampal lesions ran well on a linear track for food reward. Rats with hippocampal lesions also exhibited a pattern of perseverative errors during early task experience suggestive of an inability to suppress behaviors learned during pretraining on a linear track. Our findings establish the W-track continuous alternation task as a hippocampally-dependent learning paradigm which may be useful for identifying changes in the neural representation of spatial sequences and reward contingencies as rats learn and apply new task rules.

Genetic Structure of Europeans: A View from the North-East:

Using principal component (PC) analysis, we studied the genetic constitution of 3,112 individuals from Europe as portrayed by more than 270,000 single nucleotide polymorphisms (SNPs) genotyped with the Illumina Infinium platform. In cohorts where the sample size was >100, one hundred randomly chosen samples were used for analysis to minimize the sample size effect, resulting in a total of 1,564 samples. This analysis revealed that the genetic structure of the European population correlates closely with geography. The first two PCs highlight the genetic diversity corresponding to the northwest to southeast gradient and position the populations according to their approximate geographic origin. The resulting genetic map forms a triangular structure with a) Finland, b) the Baltic region, Poland and Western Russia, and c) Italy as its vertexes, and with d) Central- and Western Europe in its centre. Inter- and intra- population genetic differences were quantified by the inflation factor lambda (λ) (ranging from 1.00 to 4.21), fixation index (Fst) (ranging from 0.000 to 0.023), and by the number of markers exhibiting significant allele frequency differences in pair-wise population comparisons. The estimated lambda was used to assess the real diminishing impact to association statistics when two distinct populations are merged directly in an analysis. When the PC analysis was confined to the 1,019 Estonian individuals (0.1% of the Estonian population), a fine structure emerged that correlated with the geography of individual counties. With at least two cohorts available from several countries, genetic substructures were investigated in Czech, Finnish, German, Estonian and Italian populations. Together with previously published data, our results allow the creation of a comprehensive European genetic map that will greatly facilitate inter-population genetic studies including genome wide association studies (GWAS).

Quantifying the Risk of Localised Animal Movement Bans for Foot-and-Mouth Disease:

The maintenance of disease-free status from Foot-and-Mouth Disease is of significant socio-economic importance to countries such as the UK. The imposition of bans on the movement of susceptible livestock following the discovery of an outbreak is deemed necessary to prevent the spread of what is a highly contagious disease, but has a significant economic impact on the agricultural community in itself. Here we consider the risk of applying movement restrictions only in localised zones around outbreaks in order to help evaluate how quickly nation-wide restrictions could be lifted after notification. We show, with reference to the 2001 and 2007 UK outbreaks, that it would be practical to implement such a policy provided the basic reproduction ratio of known infected premises can be estimated. It is ultimately up to policy makers and stakeholders to determine the acceptable level of risk, involving a cost benefit analysis of the potential outcomes, but quantifying the risk of spread from different sized zones is a prerequisite for this. The approach outlined is relevant to the determination of control zones and vaccination policies and has the potential to be applied to future outbreaks of other diseases.

Reduced Population Control of an Insect Pest in Managed Willow Monocultures:

There is a general belief that insect outbreak risk is higher in plant monocultures than in natural and more diverse habitats, although empirical studies investigating this relationship are lacking. In this study, using density data collected over seven years at 40 study sites, we compare the temporal population variability of the leaf beetle Phratora vulgatissima between willow plantations and natural willow habitats. The study was conducted in 1999-2005. The density of adult P. vulgatissima was estimated in the spring every year by a knock-down sampling technique. We used two measures of population variability, CV and PV, to compare temporal variations in leaf beetle density between plantation and natural habitat. Relationships between density and variability were also analyzed to discern potential underlying processes behind stability in the two systems. The results showed that the leaf beetle P. vulgatissima had a greater temporal population variability and outbreak risk in willow plantations than in natural willow habitats. We hypothesize that the greater population stability observed in the natural habitat was due to two separate processes operating at different levels of beetle density. First, stable low population equilibrium can be achieved by the relatively high density of generalist predators observed in natural stands. Second, stable equilibrium can also be imposed at higher beetle density due to competition, which occurs through depletion of resources (plant foliage) in the natural habitat. In willow plantations, competition is reduced mainly because plants grow close enough for beetle larvae to move to another plant when foliage is consumed. To our knowledge, this is the first empirical study confirming that insect pest outbreak risk is higher in monocultures. The study suggests that comparative studies of insect population dynamics in different habitats may improve our ability to predict insect pest outbreaks and could facilitate the development of sustainable pest control in managed systems.

Endocrine Activity of Extraembryonic Membranes Extends beyond Placental Amniotes:

During development, all amniotes (mammals, reptiles, and birds) form extraembryonic membranes, which regulate gas and water exchange, remove metabolic wastes, provide shock absorption, and transfer maternally derived nutrients. In viviparous (live-bearing) amniotes, both extraembryonic membranes and maternal uterine tissues contribute to the placenta, an endocrine organ that synthesizes, transports, and metabolizes hormones essential for development. Historically, endocrine properties of the placenta have been viewed as an innovation of placental amniotes. However, an endocrine role of extraembryonic membranes has not been investigated in oviparous (egg-laying) amniotes despite similarities in their basic structure, function, and shared evolutionary ancestry. In this study, we ask whether the oviparous chorioallantoic membrane (CAM) of chicken (Gallus gallus) has the capability to synthesize and receive signaling of progesterone, a major placental steroid hormone. We quantified mRNA expression of key steroidogenic enzymes involved in progesterone synthesis and found that 3β-hydroxysteroid dehydrogenase, which converts pregnenolone to progesterone exhibited a 464 fold increase in the CAM from day 8 to day 18 of embryonic development (F5, 68 = 89.282, p<0.0001). To further investigate progesterone synthesis, we performed explant culture and found that the CAM synthesizes progesterone in vitro in the presence of a steroid precursor. Finally, we quantified mRNA expression and performed protein immunolocalization of the progesterone receptor in the CAM. Collectively, our data indicate that the chick CAM is steroidogenic and has the capability to both synthesize progesterone and receive progesterone signaling. These findings represent a paradigm shift in evolutionary reproductive biology by suggesting that endocrine activity of extraembryonic membranes is not a novel characteristic of placental amniotes. Rather, we hypothesize that these membranes may share an additional unifying characteristic, steroidogenesis, across amniotes at large.

Cyanogenesis of Wild Lima Bean (Phaseolus lunatus L.) Is an Efficient Direct Defence in Nature:

In natural systems plants face a plethora of antagonists and thus have evolved multiple defence strategies. Lima bean (Phaseolus lunatus L.) is a model plant for studies of inducible indirect anti-herbivore defences including the production of volatile organic compounds (VOCs) and extrafloral nectar (EFN). In contrast, studies on direct chemical defence mechanisms as crucial components of lima beans’ defence syndrome under natural conditions are nonexistent. In this study, we focus on the cyanogenic potential (HCNp; concentration of cyanogenic glycosides) as a crucial parameter determining lima beans’ cyanogenesis, i.e. the release of toxic hydrogen cyanide from preformed precursors. Quantitative variability of cyanogenesis in a natural population of wild lima bean in Mexico was significantly correlated with missing leaf area. Since existing correlations do not by necessity mean causal associations, the function of cyanogenesis as efficient plant defence was subsequently analysed in feeding trials. We used natural chrysomelid herbivores and clonal lima beans with known cyanogenic features produced from field-grown mother plants. We show that in addition to extensively investigated indirect defences, cyanogenesis has to be considered as an important direct defensive trait affecting lima beans’ overall defence in nature. Our results indicate the general importance of analysing ‘multiple defence syndromes’ rather than single defence mechanisms in future functional analyses of plant defences.

Today’s carnivals

The latest Skeptic’s Circle is up on Ferret’s Cage
Carnival of the Liberals, Number 90 is up on Quiche Moraine

My picks from ScienceDaily

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Clock Quotes

There are times when fear is good. It must keep its watchful place at the heart’s controls. There is advantage in the wisdom won from pain.
– John Hoyer Updike

New and Exciting in PLoS ONE

There are 12 new articles in PLoS ONE today. As always, you should rate the articles, post notes and comments and send trackbacks when you blog about the papers. You can now also easily place articles on various social services (CiteULike, Connotea, Stumbleupon, Facebook and Digg) with just one click. Here are my own picks for the week – you go and look for your own favourites:
Adult-Generated Hippocampal Neurons Allow the Flexible Use of Spatially Precise Learning Strategies:

Despite enormous progress in the past few years the specific contribution of newly born granule cells to the function of the adult hippocampus is still not clear. We hypothesized that in order to solve this question particular attention has to be paid to the specific design, the analysis, and the interpretation of the learning test to be used. We thus designed a behavioral experiment along hypotheses derived from a computational model predicting that new neurons might be particularly relevant for learning conditions, in which novel aspects arise in familiar situations, thus putting high demands on the qualitative aspects of (re-)learning.
In the reference memory version of the water maze task suppression of adult neurogenesis with temozolomide (TMZ) caused a highly specific learning deficit. Mice were tested in the hidden platform version of the Morris water maze (6 trials per day for 5 days with a reversal of the platform location on day 4). Testing was done at 4 weeks after the end of four cycles of treatment to minimize the number of potentially recruitable new neurons at the time of testing. The reduction of neurogenesis did not alter longterm potentiation in CA3 and the dentate gyrus but abolished the part of dentate gyrus LTP that is attributed to the new neurons. TMZ did not have any overt side effects at the time of testing, and both treated mice and controls learned to find the hidden platform. Qualitative analysis of search strategies, however, revealed that treated mice did not advance to spatially precise search strategies, in particular when learning a changed goal position (reversal). New neurons in the dentate gyrus thus seem to be necessary for adding flexibility to some hippocampus-dependent qualitative parameters of learning.
Our finding that a lack of adult-generated granule cells specifically results in the animal’s inability to precisely locate a hidden goal is also in accordance with a specialized role of the dentate gyrus in generating a metric rather than just a configurational map of the environment. The discovery of highly specific behavioral deficits as consequence of a suppression of adult hippocampal neurogenesis thus allows to link cellular hippocampal plasticity to well-defined hypotheses from theoretical models.

Sexual Conflict and Sexually Antagonistic Coevolution in an Annual Plant:

Sexual conflict theory predicts sexually antagonistic coevolution of reproductive traits driven by conflicting evolutionary interests of two reproducing individuals. Most studies of the evolutionary consequences of sexual conflicts have, however, to date collectively investigated only a few species. In this study we used the annual herb Collinsia heterophylla to experimentally test the existence and evolutionary consequences of a potential sexual conflict over onset of stigma receptivity. We conducted crosses within and between four greenhouse-grown populations originating from two regions. Our experimental setup allowed us to investigate male-female interactions at three levels of geographic distances between interacting individuals. Both recipient and pollen donor identity affected onset of stigma receptivity within populations, confirming previous results that some pollen donors can induce stigma receptivity. We also found that donors were generally better at inducing stigma receptivity following pollen deposition on stigmas of recipients from another population than their own, especially within a region. On the other hand, we found that donors did worse at inducing stigma receptivity in crosses between regions. Interestingly, recipient costs in terms of lowered seed number after early fertilisation followed the same pattern: the cost was apparent only if the pollen donor belonged to the same region as the recipient. Our results indicate that recipients are released from the cost of interacting with local pollen donors when crossed with donors from a more distant location, a pattern consistent with a history of sexually antagonistic coevolution within populations. Accordingly, sexual conflicts may have important evolutionary consequences also in plants.

Science Cafe Raleigh: The Personal Genome Project

Letting it All Hang Out: The Personal Genome Project
May 19, 2009
6:30-8:30 p.m. with discussion beginning at 7:00 followed by Q&A
Tir Na Nog 218 South Blount Street, Raleigh, 833-7795
Two years ago no one knew what personal genomics was; now it’s everywhere. For a few hundred dollars, you can have a peak at part of your own genome. You can theoretically learn your genetic risks for various diseases. And some companies say you can find romance based on your DNA. But what is all this stuff really? What does it actually mean? What will genomic privacy look like in the digital age? The Harvard-based Personal Genome Project is exploring large-scale DNA sequencing and seeing what happens when genomic data are made public; its organizers hope to help answer some of these questions.
Misha Angrist, PhD, is Assistant Professor of the Practice at the Duke University Institute for Genome Sciences & Policy. He is also a Visiting Lecturer at the DeWitt Wallace Center for Media and Democracy inside Duke’s Terry Sanford Institute of Public Policy. He was formerly a board-eligible genetic counselor. He has covered the biotechnology industry as an analyst for a market research firm and worked as an independent biotechnology consultant, writer and editor. In April 2007 he became the fourth subject in Harvard geneticist George Church’s Personal Genome Project. His book, Here is a Human Being: At the Dawn of Personal Genomics, will be published by Smithsonian Books in 2010.

Mating slugs

I know PZ has recently posted a picture and a video of slugs mating. But these pictures were taken here in North Carolina, by blog reader Kris Barstow, who says:

The year was 1999 plus or minus a year, the site was a few miles from Asheboro, NC. I don’t recall the season, but it was warm, and there is definitely a chill there in the cold seasons, so I assume spring or summer. It was about half an hour after sunrise; I was walking my dog. I would occasionally carry my camera “just because …”
I saw these two acting strangely on the surface of the wooden shed. They actually attached themselves, then went into freefall. They twined around each other, and then a moist pouch was extruded below them. White froth was present but in moderation.
I don’t recall what exactly happened after that. They remained suspended for some time, and the likeliest thing is that I left them to their passion.

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So, can someone identify the species?

The Evolution of Peeps

It is really sad when an independent book store closes. It is even sadder when that book store was not just a shop but also a center of local community, a place where people gathered to have coffee, talk, interact with boook authors, take art or yoga classes, participate in theater or children’s activities. But the economic downturn is affecting everyone and Market Street Books in Southern Village was forced to close by May 1st.
I went there a couple of times last week, to commiserate with the employees and volunteers who were packing, wondering what the future will bring for them and picked up a couple of free books they were giving away. I also took with me a souvenir – one of the poems written last Easter, during their annual PeepFest. It so happened that the poem I picked, just a piece of typed paper attached to the window with Scotch tape, was written by one of the people who was in the store at the time, helping to pack. I asked her for permission to reproduce the poem online and she said Yes. So here it is, ‘The Evolution of Peeps’ by Katie Hayes:
Which came first, the egg or the peep?
It’s quite a tough question, the answer is deep.
But the end all of answers, between me and you
Is the thing that came first was the pile of goo.
For Peeps evolved on a marshmallow isle
Selected for eons for their daring and guile
And the earliest peeps looked different back then
Like the sabertoothed Peep–which slept in the den!
Or the proud peepadactyls which travaled in flocks
Unlike today’s peeps, who travel in box.
They lost their prehensile ears and their beaks
Their penchant for flying, and fondness to screech.
Then they all died away and no one knows why
Some blame an asteroid that fell from the sky.
Or possibly lava, or sulfuric rain
I blame globalized tooth decay!
Bue there are no fossils of ancient peep brethren
Instead there are mountains of hard sugar resin
So we’re never allowed to teach it in school
Except as a theory – and not as a rule.

Clock Quotes

The soundest argument will produce no more conviction in an empty head than the most superficial declamation; as a feather and a guinea fall with equal velocity in a vacuum.
-Charles Caleb Colton, author and clergyman (1780-1832)

Today’s carnivals

Circus of the Spineless #38 is up on Birder’s Lounge
May 2009 edition of Scientiae Part II is up on Endless Possibilities v2.0
Carnival of the Green #178 is up on Go Green Travel Green
Grand Rounds Vol. 5 No. 33 is up on Nursing Handover

New and Exciting in PLoS ONE

There are 16 new articles in PLoS ONE today (as well as 13 last night and 5 on Friday night). As always, you should rate the articles, post notes and comments and send trackbacks when you blog about the papers. You can now also easily place articles on various social services (CiteULike, Connotea, Stumbleupon, Facebook and Digg) with just one click. Here are my own picks for the week – you go and look for your own favourites:

Continue reading

Twitter and the News (video)


Discussion with David Cohn, Mathew Ingram, Amber MacArthur, Sarah Milstein and Jay Rosen.
A good conversation for those interested in Twitter and the current journalistic revolution, calm-headed and smart.
Steve Paikin, who did the interview, was sometimes a little hazy about what journalism is, mixing up breaking news with news analysis with investigative journalism – I wish he has read my little classification effort – but the others corrected him politely. Worth 38 minutes of your time.

A Very Hungry Cephalopod!

Brian made me do this:

There are several others in this series, featuring warthogs, pterodactyls, mammoths and moas….all found on YouTube

Clock Quotes

If you want to be listened to, you should put in time listening.
– Marge Piercy

Triangle Tweetup

You know I went to the #TriangleTweetup last week at @Bronto, an Email Service Provider in Durham, NC, with an inflatable brontosaurus as its mascot:
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Apart from searching Twitter for TriangleTweetup, you could also follow @triangletweetup for updates. At one point during the event, the hashtag was ‘trending’ but I don’t know how high it got.
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There were about 250 people there, mostly programers, web developers and PR folks. Reminds me of the old bloggercons. Will tweetups also evolve over the years to attract more people who are using it and less people who are designing it? A first Science Tweetup a few years after the first Science Blogging Conference? Who knows?
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I tried to talk to as many people as physically possible, but 2 hours are not enough to even shake hands with 250 people, so I relaxed and tried to find people I knew from before, either offline or online. Unlike at blogger meetups where I know so many people already, here I knew (in the sense of “met in real life”) only about a dozen people from before, including @abelpharmboy, @DPAC (which is Rachel Gragg), @GinnySkal, @eronel, @waynesutton, @dgtlpapercuts, @LisaSullivan, @steveburnett, @jreesnc and @jacksonfox, as far as I can remember through the fogs of memory. But, through them, I also met new people, including among others, @beetweets, @fullsteam (of the Fullsteam Brewery serving beer from an interesting contraption, see below), @damondnollan, @mrender, @marynations, @AshleySue and @lruettimann.
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I completely missed the panel (it was techie talk anyway, so not really my reason for being there – I am a user and observer) and used my time more wisely to schmooze and meet people and see who does what and tell them what I do, etc.
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Some people blogged about the event afterwards, including my SciBling Abel Pharmboy, Ginny Skalski, Brian McDonald and Caroline Smith (of Bronto).
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[@beetweets, @abelpharmboy, @DPAC and @airieldown]
@cnmoody wrote about Three Ways to Make the Next #TriangleTweetup THAT Much Better. To that, I would add: a bigger venue (perhaps DPAC, unless Tweetups are supposed to rotate among the Triangle towns) and the inclusion of Twitter names at registration. I would have so much liked to check people out on Twitter in advance – that way I would have made a special effort to meet some people I discovered only after the event was over due to their post-event tweeting, people I have similar interests with or perhaps potential professional interests. Now I have to wait until the next time. But that is a minor suggestion – the event was great fun. I am looking forward to the next one.

My guilty pleasures of late…

…are three blogs written by the same person – Ross Horsley, a librarian with interesting creative juices.
Her first blog is My First Dictionary in which she uses pictures from an old 1950s kids’ Dictionary and replaces the text with something….usually ominous!
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Her second blog is Musty Moments with old clippings and ads, sometimes with her own text added:
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And the third is Anchorwoman In Peril! where she reviews slash-pics:
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Read the interview with Horsley at NO JUAN HERE

Trackbacks – the hows and the whys – on PLoS journals’ articles

Just read it here, then bookmark it for the next time you write a blog post about a PLoS paper…

Today’s carnivals

Scientia Pro Publica 3: the Swine ‘flu Edition is up on Deep Thoughts and Silliness
Carnival of the Blue 24 is up on Monterey Bay Aquarium’s SeaNotes

Clock Quotes

The more important the title, the more self-important the person, the greater the amount of time spent on the Eastern shuttle, the more suspicious the man and the less vitality in the organization.
– Jane O’Reilly

My picks from ScienceDaily

Dolphins Maintain Round-the-clock Visual Vigilance:

Dolphins have a clever trick for overcoming sleep deprivation. Sam Ridgway from the US Navy Marine Mammal Program explains that they are able to send half of their brains to sleep while the other half remains conscious. What is more, the mammals seem to be able to remain continually vigilant for sounds for days on end. All of this made Ridgway and his colleagues from San Diego and Tel Aviv wonder whether the dolphins’ unrelenting auditory vigilance tired them and took a toll on the animals’ other senses?

Dietary Fats Trigger Long-term Memory Formation:

Having strong memories of that rich, delicious dessert you ate last night? If so, you shouldn’t feel like a glutton. It’s only natural. UC Irvine researchers have found that eating fat-rich foods triggers the formation of long-term memories of that activity. The study adds to their recent work linking dietary fats to appetite control and may herald new approaches for treating obesity and other eating disorders.

Oxytocin: Love Potion #1? Human Hormone Increases Positive Communication Between Couples:

Relationships are difficult and most of us probably think at some point that communicating positively with our partner when discussing stressful issues, like home finances, is an impossible task. What if there was a safe way to take the “edge” off these discussions? The biology of human social relationships is just beginning to emerge as groundbreaking research on social cognition conducted in animals is now informing research in humans.

Birds Raised In Complete Isolation Evolve ‘Normal’ Species Song Over Generations:

During infancy, each of us emerges from a delightful but largely incoherent babble of syllables and learns to speak – normally, in the language of those who care for us. But imagine what would happen if we were somehow raised in utter isolation from other people, not only our parents but also from surrogates such as nurses and nannies. What sort of culture might we evolve if reared in isolation? Would we learn to speak? Would such a language evolve over multiple generations? If so, would it eventually resemble existing ones?

Cognitive Monthly

I am pretty much on record that I would not pay for anything online (to be precise, to pay for content – I certainly use the Web for shopping). But with some caveats. I have been known to hit a PayPal button of people who provide content and information I find valuable. And I would presumably pay, though not being happy about it, if the information behind the pay wall is a) unique (i.e., not found anywhere else by any other means) and b) indispensable for my work (i.e., I would feel handicapped without it).
But I am not subscribed to, or paying for, anything right now and haven’t been in years. Not even Faculty of 1000 which, one can argue, is important for my work. If I need a reprint of a paper for personal use (or perhaps to consider blogging about) I get it from the author, or if that does not work, from a friend with access.
So, I am intrigued by the announcement of ‘Cognitive Monthly’, a $2 per issue publication by Dave and Greta Munger. I got the reviewer copy of the first issue. I read it. I loved it. Would I pay $2 for something like that every month? I had to think about it long and hard, but my final answer is, actually, Yes. Why?
This is not an easy question to answer. I think a big part of my decision is the fact that I know Dave and Greta very well, in person, so I am positively predisposed to help them in this endeavor.
I am also a long-time regular reader of ‘Cognitive Daily’ – I know from experience that their posts are interesting to me. I am personally very interested in cognitive psychology of sensory perception, human behavior in traffic (driving, biking, etc.), human behavior in respect to social norms, ideology and fashion, etc. Even in busiest weeks, I’ll read at least the Science Friday post (and often participate in their research polls). Thus, I am wondering if I would have said Yes if I was unaware of Cognitive Daily from before.
The first issue, about the way theatrical productions use various illusions (light, sound, etc.) to draw the audience in, so the audience gets transported into a different place and time, is absolutely fascinating. Also, the production level of the issue is much greater than any one of their blog posts – it is longer, has a great introduction to the historical context, lots of interesting information, is written really well – this is a full-blown article that could appear in any reputable (popular science or general interest) magazine. And yet they say that this one is just a trial and that the future issues will be even more thorough. So, it is definitely an extremely high quality product, not just a quick blog post that comes and goes.
So, this is definitely fulfilling my criterion a) – it is unique. But is it b) as well? I can function professionally just fine without it, so why would I buy this every month anyway? I don’t know. I just feel that the personal education and enrichment I got from reading this article was worth $2 to me. It is hard to be rational about this – I just liked reading it and it was worth it to me. And I can’t wait for the next issue. I am actually – gasp – excited about it.
Perhaps they can do a Science Friday poll and post about this – are you more likely to pay for something if you are told in advance to think about this question? I read a lot of stuff online and never think “would I pay for this?”. But I did this time because I was asked to keep that question in the back of my mind while reading it. Did this make me more predisposed to try to give the piece a monetary value and, in comparison to $2 they are asking the deal looked good?
Give it a try yourself – you can get their stuff at Lulu.com (here is the first issue) in color, or on Amazon for Kindle (first issue) in black and white. Take a look and decide for yourself.
I am going to be watching this experiment with interest. If someone as jaded as I am got excited and is willing to pay for more of that “fix”, I am wondering if that will work for others as well. What will be the numbers of buyers on any given month, what percentage of those will be return customers, how will the word-of-mouth affect sales of any given issue (e.g., if one of them gets a lot of play on Twitter etc., and another one not so much), etc.? Definitely an interesting experiment.

Clock Quotes

We all try to be alike in our youth, and individual in our middle age … although we sometimes mistake eccentricity for individuality.
– Mrs. Alec-Tweedie

Time Lapse Painting ‘Lanjak Dawn’

Carel Brest van Kempen just posted a new one – even more ambitious than all the previous cases:

I’ve given the time-lapse treatment to a new painting. Feeling more confident with the process, I tackled a major painting this time: A pair of courting Crowned Flying Lizards (Draco cornutus) in the foreground compete for our attention with a big old male Orang-utan (Pongo pygmaeus) calling from his sleeping nest in the background.

‘Fresh’ trailer (video)

The movie Fresh, about the way we produce (and should produce) food is out. Here is the trailer:

Does anyone know when it will be in wider circulation?
Via