Category Archives: Personal

Nesting

Biscuit and Marbles:
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Links and files from ConvergeSouth and ASIS&T

My brain is fried. My flight home was horrifying – the pilot warned us before we even left the gate that the weather is nasty and that he ordered the stewardess to remain seated at least the first 30 minutes of the flight. Did the warning make the experience more or less frightening? I think it made it more so. Yes, the wind played with our airplane as if it was a toy, but knowing that the pilot thought it was nasty made it less comforting that he is confident himself in his abilities to keep us afloat. The scariest was the landing – we were kicked around throughout the descent until the moment of touch-down. The pilot had to fight it by going on with more power than he would normally use, so the touch-down was followed by very sharp breaking. Yuck. I was hoping to take a nap on the flight – yeah, right!
Anyway, while I am recovering (and trying to catch up with work), here are some files and links from the two conferences I presented at over the last week:
Let me just put everything in one place:
ConvergeSouth
The audio is here (missing the interesting Q&A unfortunately (you may have to crank up the volume on your computer to the max to hear it).
I used these links as a basis for the talk, though focusing primarily on PLoS, SciVee.com and Open Access.
CIT blog summary: Scientific publications, now with interactivity
And here is my summary.
ASIS&T:
You can watch a streaming Flash of the session (sans the last part of the Q&A) here.
My PPT can be downloaded here. Note in the recording how quickly I went through the slideshow about blogs and left the PLoS ONE slide up forever talking about the way OA publications will get integrated into other ways of doing, teaching and communicating science (including blogs) online – I certainly earned my pay for PLoS on Tuesday 😉
The Rashomon of blog summaries:
me
me
Janet
Jean-Claude
Christina Pikas
Ken Varnum
Stephanie Willen Brown

‘Way Station’ or ‘City’?

No time to experience Clifford Simak‘s Wisconsin, but Mocha (124 W. Wisconsin Ave.) in Milwaukee is very comfortable, mocha is excellent and wifi is strong (and free). I’ll be able to check in the room in an hour or two and will go to some ASIS&T sessions if I can without a name-badge. Our session is in the morning.
Jean-Claude, Janet, KT Vaughan (who I met at last year’s Science Blogging Conference) and Phillip Edwards will arrive a little later and we’ll go for dinner and fun on the town.
Report – tomorrow.

Too fast from Greensboro to Milwaukee

I just realized that I stupidly did not notice that my flight to Milwaukee tomorrow is at 6am instead of 6pm and I apparently cannot change that now. So, I am in a panic, trying to get some work done on a Sunday afternoon instead of tomorrow. If you are in Milwaukee, give me a holler – I’ll be wondering around town…probably having lunch at a Serbian restaurant, than finding a wifi spot somewhere if possible (actually the Monday program at ASIS&T is more interesting to me than Tuesday, but I would then have to pay the registration to attend). Our Science 2.0 session is on Tuesday early in the morning so if you are there, come by and listen to us.
I also skipped the RENCI/Microsoft meeting altogether – not just that it is uber-formal in its format and structure (lectures and posters with incomprehesible titles), but even the attire is ‘business casual’ – that’s what it says on their ugly, static webpage. In about a century, they may catch up with Scifoo and the 21th century. I’ll be glad to show up then, wearing my PLoS t-shirt and engaging in discussion, not formalized feather-preening.
Trying to make up for the lost time, I did not have time yet to write my post about ConvergeSouth, but for now you can see what others have written if you check the convergesouth07 tag on Technorati and see the Flickr pictures tagged as convergesouth2007. I will try to do my post later tonight if I can…

Running, breathing and being a horse

Yesterday, Chris Clarke wrote a post that I read three times so far, then finally submitted it myself for Reed’s consideration for the anthology. Most science bloggers are excellent writers, but rare is the gift that Chris displays in many a post, of weaving many threads into a coherent story that is also gripping and exciting – even when he writes about stuff like respiratory physiology, something that usually puts students to sleep in the classroom. But add a dash of evolution, a cool movie, some dinosaurs, and a personal experience and suddenly the story comes alive for the reader.
This was started as a comment on his blog, but it got long so I decided to put it here instead. You need to read his post in order to understand what in Earth I am talking about.
Human, like a horse.
First, I used to run a lot when I was in middle/high school. My favourite distances were 800m and 1500m and I usually held the school record and came in the top 10 in my age group for the city of Belgrade (pop. 2 mil.). Sure, I am lightweight and have ling legs, but I attributed my success to breathing – in exactly the same way Chris describes: 4 steps to inhale, 4 steps to exhale to begin with, then reducing it to 3, 2 or even 1 step for each inhalation and exhalation as I am approaching the finish line (or on an uphill). I was also breathing very loudly – sounding almost like a horse. And I actually imagined being a horse when I ran – a little imagery helps squeeze those last ounces of energy out of painful muscles in the end.
Horse, like a human.
Back in 1989 or so, I rode a champion sprinter racehorse throughout his winter fitness program, which was pretty much miles and miles of trotting around the track as a part of interval training. He was already getting older at the time and skipped two entire racing seasons out in the pasture, so he needed a good fitness program in order to get back on track and face the younger horses. Two decades later, he still holds the national and track records on 1000m and 1300m, going a kilometer well inside a minute. Translation: a damned fast horse! When the spring came and the professional jockeys arrived, it was time for me to give the horse to them to continue with the fast portion of the training. But, the owners wanted to reward my work by letting me, just once, get the feel for the speed. So, I took him out on the track and started in a steady canter around the course. The old campaigner knew just what to do – when we passed the last curve and entered the final stretch he took in one HUGE breath that made his chest almost double in diameter (I almost lost my stirrups at that moment when he suddenly widened) and took off. There was no way I could look forward without goggles – too much wind in my face. That was friggin’ fast! About 60km/h, I reckon, for that short burst of energy. And, during that entire final stretch he did not breath at all – he did it pretty much all on that one large breath plus anaerobic respiration. Chris, in his post, explains why horses do that. Oh, and that summer, the horse devastated his younger buddies by winning the biggest sprint of the year by several lengths, leaving the rest of the field, including that year’s Derby winner, in a cloud of dust. The audience roared as he was always a people’s favourite.
Horse and human, like a centaur.
One of the most important things in riding horses, something I always did and always taught, although it is rarely taught by others or mentioned in books, is the necessity for the rider to breath in sync with the horse’s movement. This is especially important when riding a nervous or spirited young horse who would otherwise explode. When trotting – three steps for inhale, three for exhale. Canter is more complicated. Stopping breathing leads to stiffening of the body which the horse immediately detects and it makes the horse nervous and more liable to stop at a jump or do something dangerous. It is easy to teach the adults to breath. But for the little kids, they forget, or even do not understand exactly what I am asking them to do. So, I made them sing while jumping courses. If you sing you have to breath all the time. You cannot stop breathing. So, Twinkle Twinkle Little Star got many a scared little kid over all the jumps in my classes as breathing relaxed them and gave their ponies confidence to jump.

Cool Animal Meme

This was Anton’s idea, at the dinner the other night, but I will get it started here anyway.
An interesting animal I had
I never owned an unusual species of animal. As a little kid I had small turtle named Aeschillus. Later I had two horses, half-brothers, whose names meant the same in two different languages – Meraklija in Serbian and Kefli in Hebrew both mean “one who truly enjoys life and good things in life”. My wife was a better namer of horses – her last one, the one she brought into the marriage, she named Double Helix and his barn nickname was Watson. A cat and a dog also became “mine” through marriage. We had a Love Bird briefly, and some tetras, a couple of great dogs and, of course, the three cats that sometimes grace the pages of this blog: Biscuit, Marbles and Orange Julius. Probably the most interesting animal I had, but could not really claim full ownership of (it was probably owned by someone, but was considered to be communal) was a skewbald Cameroon Pigmy Goat that served as a stall-mate to Meraklija as he was a highly strung Thoroughbred who needed company to calm him down. There were several goats in the barn, each living where needed, no matter who owned the horse in question. One of the goats was not a pigmy, but a normal-sized white goat who had to be milked every dawn and dusk by whoever was feeding the horses that day. So, on Thurdsays – my feeding day – I got to milk the goat and keep the milk for my own consumption if I wanted to.
An interesting animal I ate
Everyone has tried a taste of their lab animal at least once, so yes, I had eaten marinated and fried breasts of Japanese quail once. Delicious! Also, whenever we gelded a colt, I’d take the ‘prize’ home, marinate for a day or two, then everyone from the barn would come over to one of our houses for some great fried horse whitebreads.
An interesting animal in the Museum
George – the ancient python at the Museum of Life Science in Raleigh was everyone’s favourite for many years. Seeing a stuffed dodo is always an emotional moment.
An interesting thing I did with or to an animal
Sure, I did some stuff to my lab animals, e.g, surgeries. That is not such a big deal. More interestingly, I once participated in the Christmas slaughter of three pigs at the farm where I kept my younger horse. It is hard work and makes you really appreciate your food afterwards.
An interesting animal in its natural habitat
Bumping into a snake is always exciting. Deer, possums, raccoons, rabbits, turkey vultures and red-tailed hawks are common around here and not that exciting to see. I once saw an octopus that came too close to the coast, minutes before it was harpooned by the owner of a local seafood restaurant for dinner. Standing in the dark in Florida at the beach and watching a whooperwill on a perch from just a few feet away for almost half an hour was quite a thrill.
OK, let’s get this started. I am tagging:
Anton
Anna
Brian
Anne-Marie
Danica
Chris
Craig
Jeremy
Eric
Update: Responses are coming in fast!
Ted adds another great question: “a favorite literary animal” – mine is Charlotte (no, not Wilbur) from Charlotte’s Web. And most recently Hemi the Mule.
Here are Chris Clarke (and Tigtog who was tagged by Chris) and Brian Switek (aka Laelaps), the fastest out of the gate. Very cool stories – I’ll try to track it into the future, the tagged and the taggees, as much as I can. Oh, I did not know that Kate also rides horses and she also has a question for Spanish-speaking naturalists. And definitely check out the responses by Theriomorph and Julia Heathcote.
Both Eric and his daughter answered in parallel. Oh, I knew Anne-Marie was going to show off some cool animals she encountered in the field!
Jeremy Bruno comes through. And then, there are cool entries by John Dennehy,
Zach Miller and Dita.
Chris Taylor has seen it all. Nanette is not an adventurous eater. Rana insightful as always. Sherwood Harrington is hillarious. Also check responses by Dr. Violet Socks, Timothy Shortell and Flash.
Neil of Microecos divided each question into vertebrate and invertebrate section which is very cool. Also read Helen, Bernice and Foilwoman.
PZ Myers is waxing poetic..and erotic…about fish!
Update 2: Steve put the announcement up on the latest Friday Ark, so now everyone is tagged!
Check out the latest additions:
Will Bairs
Ed Yong
Fresh Brainz
Self-designed Student
Jessica
Jennifer Forman Orth
Dan Rhoads
Mary Ann
Meta and Meta
The Lizard Queen

Weekend!

Wow – this was a busy and exhausting week! But Trackbacks are in place and (mostly) working.
I did not even have time to unpack everything from last weekend’s pseudo-move – the house is nice and clean but still looks like a war-zone.
And tomorrow I am teaching Lab 3 (out of 4) in the morning and going to a wedding in the afternoon.
Sunday is the beginning of the Foodblogging event and I’ll also meet some science bloggers in the evening.
Blogging? Backburner until Monday, most likely….
In the meantime, learn how to draw a magpie.

Happy Birthday!

To Chris (and yes, what a great birthday present!).

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Mrs. Coturnix and I (amidst all of the packing and cleaning), are also celebrating our anniversary today. I just put some champaign to chill and, just in time for this, the mailman brought us something to drink out of:

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Pseudo-moving!

Well, I was busy with work and everything, but behind the scenes, Mrs.Coturnix took some vacation time and started completely re-doing our apartment with a help of two of her best friends. It already looks better than ever and feels great, but it is not done yet. Oh, no. This weekend, we’ll be taking the cats to the vet, kids and the dog to Grandma’s house, bringing in a truck and loading all of our stuff on it so people can come in on Monday and Tuesday and paint, replace the carpets and vinyl floors, etc., so we can move back in on Tuesday night. I’ll be going back and forth between Raleigh and Chapel Hill, taking the kids to and from school and spending my time in my ‘office’ on the corner working during those two days. How is that going to affect my blogging? Who knows. Depends on Grandma’s internet connection and how much time all the kids (and their cousins) will let me spend online.

Marbles and Orange Julius – new pictures

New pictures, under the fold

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Tanja and Doug

I mentioned that I met Tanja and Doug on Sunday. They just sent me some pictures from the meeting (under the fold) and you can also see their wildlife pictures here.

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MS Excel is the tool of the Devil!

There is a good reason why scientists in general despise MS Excel. It is cumbersome, non-common-sensical, and the stats cannot be trusted. The graphs are ugly. I am sure it took a lot of hard work to design Excel (and Word), but if I were Charles Simonyi, I would hide the authorship of those two programs as much as possible. Charles went to the Space Station, after all, paying for the ticket out of his own pocket, so there is something much more exciting (and safe) to brag about (not to mention dating Martha Stewart).
There are so many good pieces of software out there, many capable of doing some very complex statistics. For quick simple tests, nothing beats the free online GraphPad QuickCalcs. A few seconds of pasting in the data, click on “Calculate” and the numbers are all there, ready to copy and paste into the manuscript.
I still use CricketGraph (the ancient version 3.0, not anything newer) for drawing graphs as nothing beats its simplicity and the crisp clarity of the graphs. For the stuff in my field, the open source program Circadia, small enough to fit on the old big soft floppies, not updated since 1982, is still a golden standard that no newer software package can begin to match in its ease of use, clarity and ability to do everything a chronobiologist wants to do with data in a matter of few minutes. I wish I did not have to keep an old Mac around just for those two programs (new MacOS cannot read them).
But, darned Excel is the corporate standard. So, I spent the last few days cussing and cursing, being mean to the dog, and generally having a bad time, because I had to use Excel. And I started out all wrong – it was a common-sensical way to do it, but, hey, common sense does not operate here. I consulted people better versed with it to see if I was doing it right. When they said No, I had to start from scratch. And I am still doing it (a day overdue now). And it appears I’ll be doing it all day or longer…. Yuck!

Meeting a reader/commenter in RealLife is always fun!

Yesterday I had lunch (and coffee and another coffee – this lasted a while because it was so much fun) with Tanja and her husband Doug. Regulars here probably recognize the commenter who goes by the handle “tanjasova” – that’s her.
They just bought a nice house in Winston-Salem and will completely move to North Carolina next month, so we’ll get to meet each other and indulge ourselves in Serbian cuisine often in the future. They have three teenage boys (from their respective first marriages) and they live on his salary as she is still looking for a job. Now that she will be here, she can easily go and interview in person which should be helpful. If you are looking for a person with experience in several biological disciplines from biochemistry and immunology to ecology, take a look at her CV.
She gave me an update on the state of Serbian science (and the academic politics) and the recent rise of Creationists (mostly Adventists). One fortunate side-effect of the place being small, i.e., there being only one really large university (University of Belgrade) is that the “debates” and panels about evolution and creationism will inevitably bring people who know each other REALLY well. Tanja recalled one such debate she attended (in 1995 I believe). After the Creationist panelist finished his rant, the other guy, a professor of evolutionary biology (who was temporarily ousted from the University during the Milosevic regime due to his outspoken opposition), turned to him and said “And to think, my eesteemed colleague, that you got an A on my exam!”. Pwned.
Tanja and Doug also brought with them an album full of pictures just as amazing as this one – Doug is a passionate nature photographer. I hope all those pics end up somewhere online where everyone can see them.
I forgot my camera, but once they get back to their computer and send me the pictures they took yesterday, I’ll be sure to post them here. Thank you for a great afternoon!

My new office

Since I came back from California, I’ve been trying to get Time Warner to remove one of the firewalls from my cable connection so I can get into the belly of the beast of PLoS. The wifi in the apartment complex is pitiful. I also tried at Town Hall Grill, but the loading of every page was very slow on their wifi.
The absolutely best wifi in the area is at La Vita Dolce. It is superstong and superfast, both inside and outside, and I’ve been going there every day to do my work. In addition, I just love the place – since new owners took over several months ago, this little cafe has become a center of local community, almost like a little family. Their coffee is good, the cafe mocca is the best I’ve had in years (and I tried, for comparison, at several other places including around San Francisco) and their gelato is delicious. And everything served with a smile.
So, if you want to see me, come by there – my office is the table in the corner, the one closest to the power outlet (so I don’t have to drain the battery on the laptop).

Final Scifoo Wrap-up

As I predicted, bloggers have waited a day or two before they wrote much of substance abour Scifoo. First, you don’t want to miss out on any cool conversations by blogging instead. Second, the experience is so intense, one needs to cool down, process and digest everything. Before I write my own thoughts, here are some links to places where you can see what others are doing:
The campers are joining the Science Foo Camp Facebook group (honor system – only campers are supposed to join, but it is open) and exchanging links, pictures and information.
There is an official aggregator where you can see the recent posts by bloggers who attended scifoo.
More and more people are loading their pictures on Flickr.
You can see blog posts and pictures on Technorati (watch out for the dates – the 06 and 07 pics are mixed up together).
There is a Nature aggregator as well (appears to be the cleanest of them all), or you may choose to use Connotea instead.
Or you can use Google Blogsearch to find the recent posts about the meeting. They are all worth reading (I’ll highlight a few posts below).
Patrick is collecting a list of books mentioned at Scifoo.
Finally, people are posting ideas about potential future projects on Scifoo Prototypes, set up by Nikita of JoVE.
My previous posts about it are here:
Taking over the Silicon Valley
Science Foo Camp – Friday
Science Foo Camp – Saturday morning
Science Foo Camp – Saturday afternoon
Science Foo Camp – Sunday
Home
A question for Scifoo campers
That out of the way, follow me under the fold if you want to hear my angle on the story….
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Friday Cat Blogging – never on Friday

Well, it’s been a long time since I posted pictures of my cats, and a month since I last saw them and photographed them, so here they are (under the fold):

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Home!

Finally got home – after a month! So nice to see my wife again, and my son (daughter is at the beach). Dog and two of the cats (Orange Julius and Biscuit) were very happy to see me – I’ll find the third one later.
I need to sleep.
Scifoo is a 20h/day affair – getting up at 7am, eating Googleplex food while talking to some amazing folks, attending about a zillion sessions per day (each one-hour long with no breaks in-between), then staying up until 3am or so talking to smart, interesting people, until the wine and sleepiness make us all a little less smart and interesting.
I promise I will have more to say once I get some sleep!
Just one more anecdote before bed: Alex was wondering something when thinking about Martha Stewart’s concept of a Paperless House (essentially a wiki that contains everything one needs to know and organize around the house) – isn’t there going to be one kind of paper that will remain essential even in a paperless house – the toilet paper?
Well, he said he did not have the opportunity to ask her this question himself (Alex, you MAKE opportunities!), so I walked up to her and asked her if the Paperless House will still have that one remaining type of paper in the bathroom. Her response: “Well, I think everyone should have a bidet”. She won – I admit. Pwnd. She is funny.
Jonathan was standing right behind me and he heard the entire conversation, after which we had to scoop him off the floor, where he was laughing quite intensely…

Taking over the Silicon Valley

I am writing here in my hotel room in Mountain View, getting ready for the beginning of the Science Foo Camp. I rode here in a cab (really a limo, driven by the most professional driver I have ever encountered) with Felice Frankel – what an energy-boosting conversation that was! – and arrived here early.
The campers are slowly trickling in. So far, I bumped into Gabrielle Lyons and Paul Sereno. Will report more later, so stay tuned….

Last day in San Francisco

A month has passed.
It was a steep learning curve, but I think I have climbed high enough on it to be confident that I’ll be fine on my own back in Chapel Hill. Being a part of the PLoS team is such an exhillarating experience – there is so much energy and optimism around the office, everybody from CEO to the newest intern living, breathing and dreaming Open Access 24/7.
Not to bore you about the job any more – you will be hearing about PLoS over and over again here – let me, for now, just show you some pictures (under the fold) from the farewell party last night at Jupiter in downtown Berkeley, where some of us spent about six hours drinking last night…
Who was there?
Four of us Sciencebloggers: Alex Palazzo and his lovely wife, Josh Rosenau (and his parents) who has just arrived, after driving all the way from Kansas, to take on his new job at NCSE, Chris Hoofnagle and myself.
There were several of my new PLoS colleagues: Russell Uman, Barbara Cohen, Hemai Parthasarathy, Liza Gross, Gavin Yamay and, briefly, Peter Jerram with whom I had a great lunch conversation earlier in the day.
Then, some other local bloggers, scientists, friends, fans and scifoo campers: Chris Patil who is very funny, especially after a few beers (and his command of the Croatian language is getting good!!), old blog friend of mine Alvaro Fernandez and his summer intern Andreas Engvig (an MD/ PhD in Cog Neuroscience from Norway), Josh Staiger who is an old blogging friend from his days in Chapel Hill (before Google stole him from IBM), Meg Stalcup, currently in her fourth graduate program (which makes her so interdisciplinary, one’s head hurts, so of course she is invited to Science Foo Camp), Attila Csordas who is editing his Dissertation on his blog, Curtis Pickering of JeffsBench, Bosco Ho, a postdoc in Dave Agard’s lab at UCSF, and…heck, after all the beer, I am not sure I got all the names so add yourself in the comments if you were there and I omitted you from the list.
It was so much fun to see all these people get to know each other and make friends…

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A Repeat Treat

I started my stay in San Francisco with a dinner at Incanto and ended it tonight with a dinner at Incanto again. Last time, the duck fries were not on the menu, but this time I had better luck. Delicious!

Framing San Francisco

Just came back home from a very pleasant dinner with Matt Nisbet. What luck that our trips to San Francisco coincided so well! Oh, and of course, Profesor Steve Steve was there as well…
Nisbet%20and%20Steve%20Steve.jpg

Hi, Michelle!

Yesterday, I extricated myself from PLoS for lunch, because I really wanted to go and meet one of my most regular readers and commenters, who goes around here as Michelle. We had a most delightful conversation over lunch at Jack Falstaff and pictures (which, of course, include Professor Steve Steve) are under the fold:

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Earthquake

Well, if one stays in San Francisco for a month, it is bound to happen one day…
On Friday early morning (just before 5am) I woke up to an earthquake.
I’ve been through a bunch of earthquakes before – Balkans are on some kind of fault, I understand. I slept through a pretty strong one (7 Richter, I believe) while staying at a hotel on top of the mountain that was right above the epicenter. Not just that the quake did not wake me up, but even banging on the door by my friends was ineffective – hard work and mountain air conspired.
But what woke me up on Friday, I think, was not so much the shaking, but the sound. I have never actually HEARD an earthquake before: they would start slowly and it would take a few seconds to realize that the ground is moving. But this one started with a loud CRAAACK sound, which someone later at the office aptly described as the sound of a piano falling through the roof of the next-door apartment.
The epicenter was across the bay, in Oakland, but I surely felt it here. Anyway, it was quite brief in duration. I thought there was nothing I could do about it – I was OK, the house around me appeared OK, so there was nothing for me to do except turn around and immediately fall asleep again.

Science Envy

I missed this by weeks, but Dave asked a set of questions that I was pondering on, but found no time and energy to answer until now.
PZ, Janet, Martin, Chad and RPM responded (I am assuming some people outside SB did as well) and their responses (and their commenters’) are very interesting.

1. What’s your current scientific specialty?

Chronobiology, although I have not seen the inside of the lab for three years now. So, scientific publishing, education and communication – does that count?

2. Were you originally pursuing a different academic course? If so, what was it?

Yes, I went to vet school before I came to the States. Finished 3.5 out of 5 years of it, too.

3. Do you happen to wish you were involved in another scientific field? If so, what one?

It took me a while to respond to this, because it was really hard for me to answer this question. I love my field and would do it all over again. Yet, I also love evo-devo. And animal behavior. And comparative animal physiology. And palaeontology. And neuroscience. And evolutionary theory. And marine biology. And….well, pretty much everything in biology.
If I could go all the way back to early childhood and got to start all over again, no other science is completely out of the question, form math, physics and chemistry, to archaeology and psychology.
I also agree with some of my SciBlings on the Math/CS envy. I was REALLY good at math until I was about 18 or so. Decades of unuse, and now I can do little more than balance my checkbook.
In 1980 or so I had all the opportunities to turn myself into a computer programmer, but I decided that playing games was more fun, so, beyond basic HTML, I now know nothing about computers, code, and anything related and I really feel a big gap in my knowledge and ability to function bacause of this.
Another envy is philosophy – I never had an opportunity to take a single philosophy course, not even in high school, so I am completely self-taught and it shows.
But after all this thinking, I realized someting else – I am really envious of 19th century scientists! They felt no need to specialize. Why have to pick and choose, when you could do everything?
Just look at Darwin! He got to travel the world. He wrote papers, technical monographs, popular science books, a travelogue and memoirs. He did geology, palaeontology, taxonomy, comparative anatomy, natural history, plant physiology, animal behavior. Oh, yes, I heard he also dabbled in theory, so he could subsequently do evolutionary biology as well. And many consider him a philosopher.
Perhaps that is why I am so gung-ho about Science 2.0. I see a possibility that the new technology will give rise to new ways to do, publish and communicate science, forming connections between fields that were difficult or impossible to do in the 20th century, when a separate graduate degree may have been needed for such a thing.

San Francisco – a running commentary #2

Wow – this was (and still is) a very busy week. On most days, I just crashed early, without having the energy to blog very much (at least very much for me).
In the last dispatch, I forgot to mention I met Jimmy Wales who came to visit PLoS and we talked about Wikipedia and building online communities.
Under the fold are a bunch of new pictures…

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San Francisco – a running commentary

OK, so I’ve been here for about a week now. It’s been so far an exciting and overwhelming experience – there is so much to learn! And I am impatient with myself and want to get in the groove right now. I need to learn to slow down a little…
Anyway, I did manage to drop in here at the blog a couple of times and report on meetups with some local bloggers, but here is a little bit more about the week so far…

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So many things to do, if I only knew how to get there!

This Tuesday at 7pm, you can come with me and learn everything you want to know about sea urchins at the Ask a Scientist event.
Then, next Friday or two, altough it is in the middle of the workday, I’d still like to go and see the Iron Science Teacher. Jennifer siad that it was great last Friday.
The PEZ museum is supposedly just a small room full of every single PEZ dispenser ever made, but it may be interesting to see if it is not too out of the way. And I’d love to see the Festival of Fire. Who wants to go with me?
I’d like to go to the Monterey Bay Aquarium and Research Institute, the Natural History Museum and the San Francisco Zoo.
I am too far from Giant Sequoias, but Redwoods are almost as big and I’d like to see them if time permits.
And of course, I’d like to meet more local bloggers, in smaller or larger groups, or one-on-one, for meals, meetups, at sciency places in town, or out in the wilderness. Perhaps at Drinking Liberally?
Just e-mail me…

Yup, I had the rabbit!

And some other non-descript meats. And great Italian wine. In the great atmosphere of Incanto. In the company of some wonderful people, including, among others, my SciBling Sandra Kiume:

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Just a few pictures from last night

Jennifer Ouellette has the whole story, but here are a few more pictures (under the fold).
We met at Betelnut restaurant last night – Jennifer, Kristin Abkemaier (formerly of the ‘Radioactive Banana’ blog), Jeff and Curtis of the Jeff’s Bench Science 2.0 site, and my old friends from Chapel Hill, now San Francisco transplants, Justin Watt and Josh Steiger:

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First day….

PLoS%20first%20day.jpg
Enjoying the computer. Everything works!
More pictures and stuff later – I am exhausted (and a little jet-lagged) so it’s time for bed….

I am in….

…Frisco.
The flights were smooth and uneventful.
I went straight to PLoS, met some people I knew from before and others I knew only over e-mail, did the requisite paperwork, got familiarized with my computer and the beginning of getting familiarized with the ‘behind the scenes’ of the software used by PLoS journals.
My apartment is gorgeous – the owner must be an artist of some kind (probably pottery, as she is spending this month in North Carolina at Pendletonn school) as the place is so artistically and tastefully furnished and decorated.
SF is a very hilly place – I will get fit and develop big leg muscles walking uphill both ways. It took some mountain-climbing this afternoon wondering around the neighborhood and finding a store….
Tomorrow is the first official work day and I’ll probably have something to say about it. I also brought the camera and I’ll try not to forget to take some pictures everywhere I go.

I’m off…

I am about to go offline now, early to bed, early to rise…travelling to San Fran tomorrow at dawn. Hopefully I’ll be able to get back online by tomorrow afternoon.
I have scheduled a lot of reruns of the old posts (twice a day) and new quotes (once per night), but I will post new stuff as well whenever I find time: the first day at PLoS, pictures from various blogger meetups (excluding the pictures of pseudonymous bloggers), pictures of my strange meal at Incanto…and on Monday morning something you’ll probably find interesting but it is a secret right now.

Summer Plans

I’ll be leaving in one week and staying in San Francisco for one month. I’ll be busy, to say the least. What should I do with the blog in the meantime? After all, it is the middle of the summer when everyone is travelling or enjoying the great outdoors and the online traffic is pitiful – my traffic is about half of what I had in April and May. So, I doubt I’ll be penning long thoughtful essays (unless I get really inspired once or twice).
I think I’ll sit down one of these days before I leave and schedule for automatic posting a Clock Quote to appear every day around 4am for the next month or so.
Perhaps I’ll pick some of my ‘greatest hits’ and repost them as well, perhaps two per day, all science, no politics. How about the entire Clock Tutorials plus some of the best from the Clock Zoo, Clock News and Friday Weird Sex Blogging categories? After all, my traffic is, even during the summer slump, double of what it was when I just joined scienceblogs.com, so there must be a bunch of readers who have not read some of the good old stuff yet.
I check ScienceDaily every night anyway, so I’ll probably continue to post my picks every or almost every day – that really takes just a few extra minutes.
I’ll meet a lot of people and take pictures, so I’ll post those whenever I find a minute and of course, I’ll let you know what I’m doing and what I’m seeing and whom I’m meeting while there (especially liveblogging the Science Foo Camp in the early August). And if you are in the area, e-mail me and we can meet in person.
I am starting to pack and I am wondering what books to take to read there. I got a bunch of Vernor Vinge books waiting to be read, but perhaps you have better ideas.
What’s the weather like in SF in July? Will I need a sweater for a chilly night? Something against rain? Or are t-shirts sufficient?

Congratulations, Anton!

My friend (and the driving force behind all bloggy events in the Triangle area) Anton Zuiker has a new job! And not just any job – but a perfect job:

In August, I will take a new job at Duke University Health System as manager of internal communications. This will be a chance for me to mold a communications strategy that uses traditional tools (magazines, newsletters, posters) with new media tools (blogs, videocasts, wikis). I’m looking forward to the opportunities and challenges.

They really, really need Anton. Finding information online about anything that has to do with Duke University science and medicine has been, to put it very nicely and diplomatically now, frustrating and clunky. They have really tried over the past year to vigorously change that situation, but with very little visible results. Now, with Anton on board, I am confident that Duke Health System will soon become the example of good online communication that other schools will try to emulate in the future.

Congratulations, Robert

My friend, neighbor, blogger, frequent commenter on this blog, and fellow Edwards supporter, Robert Peterson just became a father again! Congratulations!

Condolences, Lindsay

I find it very difficult to say something nice, deep, profound or meaningful at the time of sorrow. But I am deeply saddened by the news that Lindsay Beyerstein’s father has died. Lindsay is a dear friend, a philosopher and a superb blogger (one of the rare bloggers who really became an online journalist in the best sense of the word), and her father, who I never had the fortune to meet, was an extraordinary man as well. So sorry!

The Eight Random Facts Meme

I got tagged by Steve Poceta -(if you are more interested in sleep disorders than circadian clocks in funny animals, his blog is more interesting to you than mine) to participate in the Eight Random Facts Meme. Here are the rules:

1. Players start with 8 random facts about themselves.
2. Those who are tagged should post these rules and their 8 random facts.
3. Players should tag 8 other people and notify them they have been
tagged.

So, here are the eight random, late-night-after-a-busy-day-and-a-strong-beer facts about me:
1. I used to wear a goatee. When I arrived in the USA, I was told a few times I looked like Jesus Christ, so I shaved it off before getting all the new documents.
2. I just traded in a clunky old Ford Winstar for a nice Toyota Corolla earlier today.
3. I used to translate Disney comic strips (yup, Mickey, Donald etc.) from English into Serbo-Croatian. Not a well-paying job, but certainly fun!
4. I have no tattoos, never wanted one, and probably will never get one.
5. My favourite city in the world is Stockholm – I wish it was more South….I was there during the record-breaking heat of summer 1990. My best friend from middle school lives there.
6. Once I played guitar for 12 hours straight (4pm – 4am) without a break and without repeating a single song. It was on a camping trip with a bunch of aikido folks who knew how to massage my wrists to keep them working through the night. They also helped with some of the lyrics.
7. The name of my second horse was the Hebrew translation of the Serbian name of my first horse (the first was Meraklija, the second was Kefli – both mean something like “a person who really knows how to enjoy life”). The two were half-brothers and I bought the second horse one day after he was born (and paid when he was six months old and ready to be weaned and shipped away).
8. The first and only pet I had as a child was a little turtle named Eschillus. Now my mother realizes I finally achieved my biggest goal in life: a house full of animals.
People I tag:
Jenna
Archy
Zuska
Sheril
Laelaps
Jennifer
Karen
Orli
Update: Laelaps, Zuska and Orli have responded so far. And Jenna. And Archy. And Karen.

Happy Birthday!

On this day in 1991 I hopped on a train and left Belgrade for good.
On this same day, a little bit earlier in history, a baby was born.
Somehow, those two events got connected.
Happy birthday to my wife!

A nice day in Chapel Hill

The other day, Anton Zuiker and I met at Weaver Street Market in Southern Village to do some planning for the Science Blogging Conference and Anton took this picture of me holding the brand new promotional postcards (want one? e-mail me) that he has designed and printed:
Bora%20at%20Weaver%20Street%20Market.JPG

Blogiversary

On this day a year ago, A Blog Around The Clock was born. Twenty-something other bloggers moved to the Scienceblogs.com empire on that same day. My old blogs are still up there, gathering cyberdust, slowly losing Google traffic and rankings, because all of the action is right here. During this year, I posted 2941 posts (that is about 8.12 posts per day) and received 5233 legitimate comments. While my new job is likely to somewhat change the tone of the blog (more science, less politics, most likely), I have no intention of slowing down. I hope you are all still here for the second anniversary next year.

Danica Needs a New Job!

Graduate of the University of Belgrade (Serbia), City University (UK) and UNC-Chapel Hill (USA), with a Masters from University of Belgrade, Danica Radovanovic is currently in Belgrade without a job and she is looking for one either in Serbia, in Western/Northern Europe or in the USA.
Danica is the tireless Serbian pioneer in all things online: blogging, open source, Linux, science blogging, open science, social networking software, online publishing, eZine editing, etc. She is the force behind putting Serbian science online and making it open. She has done research on Internet use in Serbia in comparison to the UK and the USA and has been a tireless advocate for the Internet, open source computing and Open Science, travelling around Serbia and the world talking about it. She is also a cybrarian and has experience working at the Library of Congress.
You can learn more about Danica here and check her LinkedIn CV/Resume (expanded). She will send you the real Resume on demand.
This is your opportunity to snag someone with boundless energy and enthusiasm, coupled with knowledge, skill and experience. Do you or your organization need someone like that?

O.J.

I have posted pictures of my cats before, but I believe never on Fridays. I’ll have to succumb to fashion today though, because I cannot wait any longer to show you the pics of the newest member of the family. Introducing (under the fold) – Orange Julius:

Continue reading

It’s Official!

Yes. I said I wanted this job. And, in a very new and interesting way, after a fun interview, I got it. Signed and faxed the contract yesterday. Will be in San Francisco for a little while in July, then telecommute afterwards. Can pajamas be deducted as tools one needs for the job? Exciting!

Conferences should be more spread out….

First, I tentatively reserved a spot for myself for the Science Foo Camp on August 3-5, 2008 in Mountain View, CA.
Then, there is nothing for a long time, then three conferences I want to go to, and for all three I have some degree of negotiations about presenting about Open Science or science blogging or in some way being involved, and all three are almost simultaneous:
ConvergeSouth 2007 in October 19-20, 2007, in Greensboro, North Carolina.
The 2007 Microsoft eScience Workshop at RENCI at the Friday Center in Chapel Hill, NC on October 21-23, 2007
ASIS&T: Joining Research and Practice: Social Computing and Information Science on October 18-25, 2007 in Milwaukee, Wisconsin
Perhaps I can finagle to go to Greensboro for two days, Chapel Hill for two days and Milwaukee for two days – my wife is gonna kill me for abandoning her with the kids for so long while I schmooze with interesting people!
Then again, nothing for a long time until the North Carolina Science Blogging Conference, at Sigma Xi, RTP, on January 18-19, 2008.
Unfortunately, I found no sponsor to go to this next week. Ah well, it turned out to be far too molecular for my taste anyway.

Housekeeping

I am working on a post covering three (excellent) recent Drosophila clock-genetics papers and I am trying not to mention a single gene in it – just the historical, methodological, behavioral and ecological context of the results. It will appear later today/tonight. We’ll see how it turns out.
I have lined up ClockQuotes for the weekend, but I intend to be very busy so there may not be much or anything else posted – it is not really worth the effort when the traffic falls down to 50% over the weekend.
The doc who put my shoulder back is a genius. It never happened before that I never needed to take a single aspirin and immediatelly had a full function of the arm after it is put back in place.
Off to lunch with Abel now…

There is nothing I like doing more than herding cats!

Business customers and children can be tough to manage online, but can you imagine managing scientists! They are already hard enough to satisfy in their native environment offline (e.g., to look beyond the usual metrics when awarding tenure). I know, I am making links in this post so cryptic, you’ll just have to click to see what on Earth I am talking about and make your own connections…

Thank you!

Oullette%201.jpgOullette%202.jpg
This and this arrived in the mail today. A birthday present from one of my readers! Thank you!

The Inter-Ghost Connection

The other day I was chatting with my brother (the smarter brother of Sherlock Holmes) on the phone, and he said something that may have some truth to it – I was predisposed, from early childhood, to understand and like the Web and the blogs. How? By reading and re-reading a million times the books about the adventures of The Three Investigators. Actually, only four of the early books in the series were tranlated into Serbo-Croatian, but I read them over and over. Later, here in the USA, I managed to find and read a few more in English.
What does that have to do with blogging? Well, back in the 1960s when the adventures were going on, there were no computers and the Internet. Yet, the three intrepid boys had to use their smarts and every contraption they could build from readily available materials, to solve mysteries and catch criminals. Usually, there would be something apparently supernatural happening and Jupiter Jones, Pete Cranshaw and Bob Andrews would figure out the completely natural explanation for it – usually some smokscreen built by the villain in order to cover his tracks (Mary V. Carey, one of the author of later volumes, broke this essential rule and left some supernatural stuff as such at the great consternation of readers who were all budding skeptics).
One of the inventions they came up with was the Ghost-to-Ghost Hookup:

Developed by Jupe in “Stuttering Parrot,” the Ghost to Ghost hookup was designed to get a lot of kids looking for something or someone at once without each person having to be personally contacted by the Three Investigators. Jupe, Pete, and Bob would each phone five friends and ask for the requested information. If none of those fifteen boys could help, then they would pass the message along to five each of their friends. The sheer numbers involved made it possible to mobilize the kids of Rocky Beach in a short time to be on the lookout for whatever person or object the boys were hunting. Jupe named it “Ghost to Ghost” because they would most likely not know who would be calling with information, and the voices on the phone would appear like “ghosts” to the boys, plus the name has flavor and color. The down side to the hookup was that all the phones in Rocky Beach would have busy signals while the messages were being passed along. The Ghost to Ghost Hookup helps out in several cases, including “Stuttering Parrot,” “Whispering Mummy,” “Crooked Cat,” “Shrinking House,” and others.

Or, from here:

Perhaps you remember the moment in The Mystery of the Stuttering Parrot when Bob and Jupiter, together, invent the Ghost-To-Ghost hookup? As Jupiter points out, the scheme could be used for contacting people “all the way from here to the Atlantic Ocean, if necessary. That would make it a Coast-To-Coast Hookup. But such a phrase has been used in the past by the television and radio networks. I prefer to be distinctive. So we will call ours a Ghost-To-Ghost Hookup.” In the Ghost-To-Ghost Hook-up, each of the Three Investigators calls five friends and asks each of the friends to call five more friends, and asks those in turn to call five more, and so on, until as Jupiter puts it, “we get results.”

You can find more about the books (and the movie coming out in a few months – I am excited!) here, here and here.
First, let me say that the ‘Ghost-to-Ghost Hookup’ was translated into Serbo-Croatian as “medjuduhovski spoj” whcih then translates back into English as “Interghost Connection”, a term I prefer to the original.
And, that is what we want whenever we post something online. If I want to get some informaiton out, or ask a question, I do not call five friends, but write a blog post. The post will be seen by about 1500 people on the first day, then cumulatively by as many or more over the subseuqne days and weeks. If the information is deemed important or interesting by the readers, they can take any kind of action. Know the answer? Post it in a comment or send me an e-mail. If not, you can print out the post and show the hardcopy version to your computer-shy friends. You can click on the “e-mail this article” button and send it to your friends. Or, you can click on one of the buttons on the bottom and send the information to places like Digg, Reddit, Slashdot or Stumbelupon. You can place a link to it in the Notes on your facebook profile or MySpace. You can post the information and the link on your own blog. Unlike telephones – the lines are never busy. Unlike telephones, there is no game of broken telephones: copy+paste coupled with the link to the original post makes the spread of information in high fidelity. So, instead of covering the small town of Rocky Beach in a few hours, I can, theoretically, cover half of the world in a few minutes, especially if he informaiton is really important.
So, once I saw my first blog, I subconsciously realized that this is the superior and modern version of the Interghost Connection. Remembering its effectiveness from the old books, of course I was immeditaelly drawn to use this way of communication for my own nefarious purposes. And I am still doing it, apparently….

Back from the ER

Yup, it happened again. My left shoulder popped out of the socket, right around 12:30 after midnight. I used to be able to put it straight back. My wife did it a couple of times before – she’s a nurse after all. It first happened at a horse show when I was abotu 18 or so and had it fixed on the spot by a sports medicine doc. I had it put back by friends, passers-by, medical students, veterinarians, but as the time passes it gets more and more difficult to put back. This is the second time in a row (last time was about 5 years ago) that I had to go to ER, be put to sleep and wake up with the arm in place. It usually hurts like hell for a few days afterwards, so i got some pain medicine.
I am supposed to teach tonight and meet some people over the next couple of days – I hope I am able to do so.