Today’s Carnivals

Encephalon #32 is up on Living the Scientific Life.
Gene Genie #16 is up on Neurophilosophy.

ClockQuotes

Come out of the circle of time
And into the circle of love.

– Jalal-Uddin Rumi

Foodblogging and the post-foodblogging science-blogging dinner

The three-day Foodblogging event has started, with a reading/booksigning by Michael Ruhlman at the Regulator bookshop in Durham.
Among those in the audience were Reynolds Price, local bloggers Anton Zuiker and Brian Russell, as well as Anna Kushnir, foodblogger who drove all the way from Boston (OK, via Virginia) to attend the event.
I bought The Reach of a Chef and asked him what is the best way to get a kid/teenager who is interested in cooking started. He said that hands-on experience is essential and that one should carefully pick a course that focuses on basics and not on fancy gimmicks to begin with. Then, asking to taste a dinner at home and praising the result is the next step. Anton wrote a more detailed account of the evening.
After the reading, a bunch of us went accross the street to Baba Ganoush for dinner (and even later to the sushi bar on the corner for some Guinness) – but this time we quickly switched the topic from food to science as everyone at the table was a science blogger! Anna Kushnir, who I mentioned above (and linked to her food blog) is also a science blogger on Nature Network, so check out her Lab Life blog. You also know the other locals, Sheril Kirshenbaum and Abel Pharmboy, but the special guest of the evening was Craig McClain who came all the way from California to do some work at NESCENT. Much marine science talk ensued, all interesting and I learned a lot of stuff I did not know before.
Here is one of the pictures from the dinner:
Post-foodblogging%20science-dinner.jpg

Songs not to sing at weddings

Last night at the wedding, DJ went around asking for song suggestions and I thought back about Serbian weddings and how many songs there are that are inappropriate for weddings there – so many songs are sad, melancholic romances about lost loves, about lives lost in alcohol after the only loved one got married to someone else. Heck, just a brief look at songs by Djordje Balasevic (aka George Nationale) reveals several of those, so I found a couple on YouTube and posted them under the fold for my Balkan readers – the lyrics are very difficult to translate as he loves to use localisms, archaisms and words and imagery that make sense only in the local context.
The first one is a clip from a movie made by a friend of mine Zoran Amar, which aired on Belgrade TV in the early 1980s and consisted entirely of clips of Djordje’s songs. The others are from more recent concerts (wow – he’s gotten old since I last saw him!). Of all the ex-Yugoslav artists, Djordje (with whom I apparently share the birthday) was the only one who had concerts during the 1990s (during all the wars) in all the ex-Yugoslav states: Bosnia, Croatia, Serbia, Slovenia, Macedonia…and in each of those places had thousands come and sing along – everyone over there knows every word of every song of his. I used to play all of his songs at parties. I made people cry singing the song from the second clip…certainly not for weddings!

Continue reading

Raleigh News and Observer on Anton Zuiker, Triangle bloggers, Science Blogging Conference

I was out and offline all day yesterday, so I missed this wonderful article by Dan Barkin in yesterdays’ N&O (I just took the paper out of its plastic bag a few minutes ago):
Bloggers to talk science.
It tells you where Anton Zuiker comes from and where he is going next. The killer paragraph is this one:

The Web has evolved into a tribal Internet of passionate bloggers like Zuiker, and he has become a sort-of local brand. He’s a quiet visionary. He’s a low-key doer. He’s a let’s-get-together-and-see-where-this-goes guy. It’s the Zuikers of this new, interwoven world who may play a significant role in determining how far Web 2.0 goes from being a sociable network to a social force.

That is so true! Without Anton, there would be no Triangle blogger meetups, no BloggerCon, no Podcastercon, no Foodblogging, no Storyblogging and no Science Blogging Conference. Sure, Brian, Paul, myself and others may come up with a cool idea here and there, but those ideas would go nowhere without Anton’s calm persistence (and don’t get me wrong, Anton has a dozen cool ideas before breakfast every day himself) – he makes things actually happen in the real world.
Definitely go and read the entire thing! And also read what Paul, Brian and Abel wrote about the article as well. Of course, go say Hello to Anton himself, and see all the things he’s been doing lately on BlogTogether.org.
And I hope to see you at the Foodblogging event tonight.

Today’s Carnivals

The XVIth edition of Radiology Grand Rounds is up on Sumer’s Radiology Site.
Friday Ark #157 is up on The Modulator.

ClockQuotes

It is common error to infer that things which are consecutive in order of time have necessarily the relation of cause and effect.
– Jacob Bigelow

ClockQuotes

It seems a long time since the morning mail could be called correspondence.
– Jacques Barzun

Weekend!

Wow – this was a busy and exhausting week! But Trackbacks are in place and (mostly) working.
I did not even have time to unpack everything from last weekend’s pseudo-move – the house is nice and clean but still looks like a war-zone.
And tomorrow I am teaching Lab 3 (out of 4) in the morning and going to a wedding in the afternoon.
Sunday is the beginning of the Foodblogging event and I’ll also meet some science bloggers in the evening.
Blogging? Backburner until Monday, most likely….
In the meantime, learn how to draw a magpie.

My picks from ScienceDaily

How The Brain Handles Surprise, Good And Bad:

Whether it’s a mugger or a friend who jumps out of the bushes, you’re still surprised. But your response–to flee or to hug–must be very different. Now, researchers have begun to distinguish the circuitry in the brain’s emotion center that processes surprise from the circuitry that processes the aversive or reward “valence” of a stimulus. C. Daniel Salzman and colleagues published their findings in the journal Neuron.

Official Kilogram Losing Mass: Scientists Propose Redefining It As A Precise Number Of Carbon Atoms:

How much is a kilogram? It turns out that nobody can say for sure, at least not in a way that won’t change ever so slightly over time. The official kilogram — a cylinder cast 118 years ago from platinum and iridium and known as the International Prototype Kilogram or “Le Gran K” — has been losing mass, about 50 micrograms at last check. The change is occurring despite careful storage at a facility near Paris.

The Science Of Collective Decision-making:

Why do some juries take weeks to reach a verdict, while others take just hours? How do judges pick the perfect beauty queen from a sea of very similar candidates? We have all wondered exactly why we did not win a certain award. Now, new psychological research explains how groups come to a collective decision.

Understanding The Neuron’s Green Architecture:

Being green is a lifestyle. Turns out, each of your neurons is deeply committed to that green lifestyle – and you didn’t even know it. In just a thousandth of a second, a neuron can dump up to 5,000 molecules of its chemical messenger – a neurotransmitter – into the synapse, where it will trigger an impulse in a neighboring nerve cell. The neuron is a recycler par excellence when it comes to these neurotransmitters. Neurons must not only ready neurotransmitter receptors to receive the signals coming fast and furious, but they must also recycle receptors that have been used. And you thought you had recycling problems?

Biologists Expose Hidden Costs Of Firefly Flashes: Risky Balance Between Sex And Death:

A new study by biologists at Tufts University has discovered a dark side lurking behind the magical light shows put on by fireflies each summer. Using both laboratory and field experiments to explore the potential costs of firefly courtship displays, the biologists have uncovered some surprising answers.

Bioluminescence Genes Found Through Metagenomic Study Of Deep Mediterranean:

Metagenomics is a revolutionary approach to study microbes. Rather than isolating pure cultures, the power of high-throughput sequencing is applied directly to environmental samples to obtain information about the genomes of the prokaryotic cells present in a specific habitat studied. The ocean is an ideal subject of this approach because of its enormous microbiota, whose biomass equals that of all other living organisms on earth is mostly microbial, and also because most of these microbes are extremely fastidious to cultivate.

New Strategy To Create Genetically-modified Animals Developed:

Researchers at the University of Pennsylvania School of Veterinary Medicine have demonstrated the potential of a new strategy for genetic modification of large animals. The method employs a harmless gene therapy virus that transfers a genetic modification to male reproductive cells, which is then passed naturally on to offspring.

The Petri Dish Is Taken To New Dimensions:

A team of Brown University biomedical engineers has invented a 3-D Petri dish that can grow cells in three dimensions, a method that promises to quickly and cheaply produce more realistic cells for drug development and tissue transplantation.

Scientific Nursing Top Gives Breastfeeding Babies A Brain Workout:

Breastfeeding babies could become smarter thanks to a scientifically designed ‘clever baby’ nursing top recently revealed by the University of Portsmouth.

New Understanding Of Basic Units Of Memory:

A molecular “recycling plant” permits nerve cells in the brain to carry out two seemingly contradictory functions — changeable enough to record new experiences, yet permanent enough to maintain these memories over time.

Great news from PLoS for Bloggers

Yesterday, PLoS ONE moved to the newest version of the TOPAZ platform. Rich Cave explains all the improvements that this move entails, including the citation download for articles, but one new feature that should really be exciting to bloggers are Trackbacks.
From now on, if you link to a PLoS ONE article in your post, that article will display a link back to your blog post (go to an article and look at the right side-bar, nested between the Discussions and Ratings). Thus, in addition to the conversation already going on in the commentary attached to the article itself, the readers will be able to access the responses from the blogosphere as well. And that should also bring additional traffic to the bloggers.
I have been testing the feature over the past 24 hours or so, but I need your input in order to refine and improve the Trackbacks feature.
First, for the time being, the link you use in your post has to be in the format of the full URL of the full text (i.e., not the shorter, DOI-only compression), so this is how it should look like (replace 0000000 with the actual number of the article):
http://www.plosone.org/article/info%3Adoi%2f10.1371%2Fjournal.pone.0000000
Unfortunately, for the time being (and we are working on it), this shorter form of the URL will not work:
http://www.plosone.org/doi/pone.0000000
Likewise, links to other parts of the site, e.g., to the PDF of the article, will not generate trackbacks.
So far, it appears that Trackbacks are working automatically on Drupal and MoveableType, i.e., there is no need for manual trackbacks.
In WordPress.com, it is necessary to type the trackback URL into the appropriate field in your posting form. The trackback URL is in this form:
http://www.plosone.org/article/info:doi/10.1371/journal.pone.0000000/trackback
At this moment, it appears that links from Blogger/Blogspot blogs do not generate Trackbacks, but we are working on it. Test it anyway and let me know if there is a “trick” I missed so far.
Also, please let me know how it works on other platforms (e.g., Typepad, Radio Userland, Blogsome, LiveJournal, etc.)
I am not 100% sure (so tell me if I am wrong), but links posted “under the fold” will also not generate a trackback.
Also, and this may differ between platforms, I am not sure that republishing a blog (or an individual post) will trigger trackbacks from links made before yesterday. Give it a test run and let me know, please.
You can give me feedback in the comments here, or by e-mail, or by contacting the Webmaster on the PLoS ONE site itself.

My picks from ScienceDaily

Velociraptor Had Feathers:

A new look at some old bones have shown that velociraptor, the dinosaur made famous in the movie Jurassic Park, had feathers. The discovery was made by paleontologists at the American Museum of Natural History and the Field Museum of Natural History.

Personal Genomes: Mainstream In Five Years, But Who Should Have Access?:

Imagine this: you visit your clinician, undergo genetic testing, and then you are handed a miniature hard drive containing your personal genome sequence, which is subsequently uploaded onto publicly accessible databases. This may sound like science fiction, but it is scientific fact, and it is already happening.

Key To Longer Life (in Flies) Lies In Just 14 Brain Cells:

Two years ago, Brown University researchers discovered something startling: Decrease the activity of the cancer-suppressing protein p53 and you can make fruit flies live significantly longer. Now the same team reports an intriguing follow-up finding. The p53 protein, they found, may work its lifespan-extending magic in only 14 insulin-producing cells in the fly brain.

Eat Less To Live Longer: Calorie Restriction Linked To Long Healthy Lives:

For nearly 70 years scientists have known that caloric restriction prolongs life. In everything from yeast to primates, a significant decrease in calories can extend lifespan by as much as one-third. But getting under the hood of the molecular machinery that drives this longevity has remained elusive.

The Best Both Of Worlds: How To Have Sex And Survive:

Researchers have discovered that even the gruesome and brutal lifestyle of the Evarcha culicivora, a blood gorging jumping spider indigenous to East Africa, can’t help but be tempted by that ‘big is beautiful’ mantra no matter what the costs.

Basic Research Robust In Face Of More University Patenting:

As universities continue transforming scientific discoveries into potentially lucrative patents, many wonder how this might be transforming academic science itself.

Why Are Some Groups Of Animals So Diverse?:

A new study of finger-sized Australian lizards sheds light on one of the most striking yet largely unexplained patterns in nature: why is it that some groups of animals have evolved into hundreds, even thousands of species, while other groups include only a few?

Why Conservation Efforts Often Fail:

Modern conservation techniques have brought us the resurgence of American bald eagles, sustainable forest harvests and the rescue of prized lobster fisheries. So how can modern conservation strategies also have wrought such failures, from the catastrophic loss of Guatemalan forests to the economy-crippling Klamath River salmon kill in 2006?

ClockQuotes

Perfection is a waste of time.
– Kim De Coite

Welcome the new newest SciBling!

Go say Hello to the very latest addition to the Scienceblogs Universe – Coby Beck of A Few Things Ill Considered.

Today’s Carnivals

I and the Bird #58 is up on The Nightjar.
Change of Shift: Volume Two, Number 7 is up on Emergiblog.
The Carnival of Space – week 21, the XPrize edition – is up on Why Homeschool

Happy Birthday!

To Chris (an no, I am not the commenter who signed with “a sea cucumber” handle…).

Postdocs in some really good circadian labs

A post-doctoral position is available in the laboratory of Dr. Tosini to investigate the cellular and molecular mechanisms that control circadian rhythms in the mammalian retina [Tosini et al., (2007) Faseb J.; Sakamoto et al., (2004). J. Neuroscience 24: 9693-9697; Fukuhara et al., (2004) J. Neuroscience 24:1803-1811; Tosini G., Menaker, M. (1996) Science, 272: 419-421).The position is funded by a grant from the National Institute of Health.
The work will focus on the characterization of newly developed transgenic mice using physiological (ERG), molecular (Q-PCR and Laser Capture Microdissection) and bioluminescence recording from the whole retina or single photoreceptors. Previous experience in the circadian field and with retinal tissue is a plus, but not necessary.
The Neuroscience Institute at Morehouse School of Medicine is equipped with state-of-the-art equipments for research in Neuroscience and in particular on circadian rhythms and sleep disorders.
Gianluca Tosini, Ph.D.
Professor and Director
Circadian Rhythms and Sleep Disorders Program
Neuroscience Institute
Morehouse School of Medicine
720 Westview Dr. Atlanta, GA
Postdoctoral Research position available to study the control of circadian rhythms by sustained attention. Emphasis is on the ACh projection from the basal forebrain to the suprachiasmatic nucleus and the control of circadian rhythms. Ph.D. in Biopsychology, Neuroscience, or related fields is preferred. Familiarity with chronobiology and/or control of behavior through operant conditioning will be helpful. Primary responsibilities: designing and coordinating experiments to study the control of daily rhythms by a task that requires high, sustained attention; microdialysis; stereotaxic surgery; histology; managing students that will also work on this project. Salary commensurate with experience; health insurance provided. Length of appointment could be 3 yrs. Please send resume and contacts for recommendations to: Dr. Theresa M. Lee, University of Michigan, Dept of Psychology, 530 Church St, Ann Arbor, MI 48109-1043. Review of applications will begin Sept 1, 2007 and continue until the position is filled. Start date is negotiable.
Theresa M.Lee, Ph.D.
Professor, Psychology & Neuroscience Program
Chair, Department of Psychology
University of Michigan
530 Church St
Ann Arbor, MI 48109-1043

Rethinking FOXP2

Earlier studies have indicated that a gene called FOXP2, possibly involved in brain development, is extremely conserved in vertebrates, except for two notable mutations in humans. This finding suggested that this gene may in some way be involved in the evolution of language, and was thus dubbed by the popular press “the language gene”. See, for instance, this and this for some recent research on the geographic variation of this gene (and related genes) and its relation to types of languages humans use (e.g., tonal vs. non-tonal). Furthermore, a mutation in this gene in humans results in inability to form grammatically correct sentences.
This week, a new study shows that this gene is highly diverse in one group of mammals – the bats:

A new study, undertaken by a joint of team of British and Chinese scientists, has found that this gene shows unparalleled variation in echolocating bats. The results, appearing in a study published in the online, open-access journal PLoS ONE on September 19, report that FOXP2 sequence differences among bat lineages correspond well to contrasting forms of echolocation.

As Anne-Marie notes, this puts a monkey-wrench in the idea that FOXP2 is exclusively involved in language, but may be involved in vocalizations in general:

Said gene might have a new function (sensorimotor) besides the one originally attributed to it (verbal language).

Jonah Lehrer notes that the same mutation that in humans eliminates ability to use or comprehend correct grammar is also found in songbirds and the gene is expressed at high levels during the periods of intense song-learning. The story is obviously getting very interesting – does this gene have something to do with vocalizations? Or with communication? Or something totally third?
Looking forward to further responses by other blogs, hopefully Afarensis, John Hawks and Language Log?
The article on FOXP2 in bats was published yesterday on PLoS ONE so you can access it for free, read, download, use, reuse, rate, annotate and comment on.
Update: Mark Liberman explains more (and takes me to task for a mistake I made in haste last night) in this post on Language Log.
Update 2: John Hawks explains.

Anyone going to this?

Symposium Light, Performance and Quality of Life is on Thursday, 8 November 2007 in Eindhoven, the Netherlands:

Introduction
The ancient Greek already referred to the wholesome effects of the (sun)light on mankind. Ever since the industrialization, more and more people are devoid of bright daylight for a large part of the day. With the ongoing industrialization and the current information-society the number of persons that spent al large part of the day indoors further increases.
The light in these buildings is, also due to the modern trend of small windows and low lighting-levels, notably lower than the biological need for light of people. Also the energy crisis in the early seventies has been an influence on driving back sufficient light, as a result sometimes reducing the level of light inside buildings to nearly ” biological darkness”.
Rediscovery of light in relation to health.
The past 15 to 20 years light has returned to the full attention of the scientific community. Particularly visible light that reaches the retina of the human eye brings about a number of biological effects. The fact that light, besides a necessity to see, also regulates biological functions, has lead to research programs at different institutes and universities. The questions with which these centres occupy themselves are among others:
* Which bio-mechanisms are influenced by light that falls on the eye?
* What possibilities are there to use light for curative and preventive means?
In the end the increasing social importance of research and applications of light on health, have lead to the foundation of the “Stichting Onderzoek Licht & Gezondheid”, the Light & Health Research Foundation (SOLG).
The Light & Health Research Foundation is based at Eindhoven, University of Technology

Welcome the newest SciBling!

Go say Hello to Sciencewoman!

Blogrolling for Today

Lali’s Laboratory


Frog Blog


d(PhD)/dt


The Badge (SF Chronicle Police Beat Blog)


Alexipharmacopeia


Ed Boyden


The Conscience of a Liberal (Paul Krugman)


GMO Africa

Less you sleep, craziest the dreams!

There is an intriguing article in Scientific American about the consequences of sleep deprivation. When the brain is finally allowed to catch up with sleep, it tries to make-up for the loss of slow-wave sleep, but it also tries to make up for the loss of REM sleep as well – by making it more intense! As a result, the dreams are like scenes from something like “Jumanji” – wild animals running around and other crazy stuff. A very good article about various ideas on the function of sleep and dreams.

Facebook, after weeks of pressure, still bans breastfeeding photos!

I thought the LiveJournal debacle taught them a lesson. I guess not. Melissa posted about this a couple of weeks ago, and Tara did it today again because the issue has not been resolved yet. So did PZ Myers (Janet Stemwedel and Dr. Joan Bushwell also chime in). Facebook is deleting pictures of breastfeeding and banning users who post them. Now that Facebook is not just for college crowd, there are more and more moms and dads on the network, proudly showing off their offspring to the world. Including offspring in the moments of feeding bliss.
But, you know that in this country there are a lot of dirty old men who find that scene somehow sexual (what kind of sick upbringing results in such sexual perversion, I wonder?), including, apparently, someone in the upper echelons of Facebook. Join the fast-growing Facebook group and send them a message. Blog about this as well. Force them to reverse this medieval decision.

Eric Dezenhall PR memo to publishers leaked

Jim Giles, New Scientist contributor, got the memo and wrote a blog post and an article about it. You can read the actual memo here (pdf) to see what Dezenhall advised the dinosaur publishers to do to stave off the inevitable move to Open Access. So now you can see where PRISM comes from.

Tennessee bans lethal injection

Based in part on this study, lethal injection has been ruled (at least for now) unconstitutional in the state of Tennessee.
The executions by lethal injection have been on hold for several months now in North Carolina as well, until the legality of it is figured out. I hope NC follows in the footsteps of TN soon.

Happy Birthday!

To Chris (and yes, what a great birthday present!).

ClockQuotes

The best thing about the future is that it comes one day at a time.
– Abraham Lincoln, 1809 – 1865

Panda’s got some teeth!

Have you seen the new design of Panda’s Thumb?

Science Blogging Conference

2008NCSBClogo200.pngJust a reminder – watch out as I am now getting into that mode when I get on everyone’s nerves with promoting the conference almost daily – that there are now 60 amazing people already registered for the conference, so you should register soon, before we reach the cap. Don’t forget to sign yourself for the Friday dinner as well. The Program is getting closer and closer to its final shape. We’ll need volunteers (especially local drivers) and we’ll be glad to get additional sponsors if your organization is interested.

Today’s Carnivals

The 135th Carnival of Education is up on The Education Wonks.
The latest edition of the Homeschooling Carnival is up on About:Homeschooling.

Endocrine rhythms

Circadian clocks: regulators of endocrine and metabolic rhythms by Michael Hastings, John S O’Neill and Elizabeth S Maywood is a new and excellent review of the interaction between the clocks and hormones in mammals, focusing at the molecular level. The pre-print PDF of the article is freely available on the Journal of Endocrinology site.

My picks from ScienceDaily

Brain Network Related To Intelligence Identified:

A primary mystery puzzling neuroscientists – where in the brain lies intelligence? – just may have a unified answer.

The title alone should provoke a storm in the blogosphere 😉
Prehistoric Aesthetics Explains Snail Biogeography Puzzle:

The answer to a mystery that long has puzzled biologists may lie in prehistoric Polynesians’ penchant for pretty white shells, a research team headed by University of Michigan mollusk expert Diarmaid Ó Foighil has found.

Who’s Afraid Of The Big, Bad Wolf? Coyotes:

While the wily coyote reigns as top dog in much of the country, it leads a nervous existence wherever it coexists with its larger relative, the wolf, according to a new study from the Wildlife Conservation Society. In fact, coyote densities are more than 30 percent lower in areas that they share with wolves.

Gene Involved in Human Language Development Also Involved In Bat Echolocation:

When it comes to the FOXP2 gene, humans have had most to shout about. Discoveries that mutations in this gene lead to speech defects and that the gene underwent changes around the time language evolved both implicate FOXP2 in the evolution of human language.

Mortality Of Plants Could Increase By 40 Percent If Land Temperatures Increase 4 Degrees Celsius:

Scientists from the Mediterranean Institute for Advanced Studies* have formulated a universal rule that explains the equilibrium of plant communities, showing how plants assure the survival of their species whether their lives last a day or are prolonged over centuries.

ClockQuotes

Don’t let the fear of the time it will take to accomplish something stand in the way of your doing it. The time will pass anyway; we might just as well put that passing time to the best possible use.
– Earl Nightingale, 1921 – 1989

New and Exciting in PLoS ONE

There are 28 new articles up on PLoS ONE today. As always, I offer you my own picks, but you go there and look at all of them, then read, rate, comment and annotate:
Living with the Past: Nutritional Stress in Juvenile Males Has Immediate Effects on their Plumage Ornaments and on Adult Attractiveness in Zebra Finches:

The environmental conditions individuals experience during early development are well known to have fundamental effects on a variety of fitness-relevant traits. Although it is evident that the earliest developmental stages have large effects on fitness, other developmental stages, such as the period when secondary sexual characters develop, might also exert a profound effect on fitness components. Here we show experimentally in male zebra finches, Taeniopygia guttata, that nutritional conditions during this later period have immediate effects on male plumage ornaments and on their attractiveness as adults. Males that had received high quality food during the second month of life, a period when secondary sexual characteristics develop, were significantly more attractive as adults in mate choice tests than siblings supplied with standard food during this period. Preferred males that had experienced better nutritional conditions had larger orange cheek patches when nutritional treatments ended than did unpreferred males. Sexual plumage ornaments of young males thus are honest indicators of nutritional conditions during this period. The mate choice tests with adult birds indicate that nutritional conditions during the period of song learning, brain and gonad development, and moult into adult plumage have persisting effects on male attractiveness. This suggests that the developmental period following nutritional dependence from the parents is just as important in affecting adult attractiveness as are much earlier developmental periods. These findings thus contribute to understanding the origin and consequences of environmentally determined fitness components.

More under the fold….

Continue reading

New and Exciting in PLoS Medicine and PLoS Biology

There is new cool stuff published last night in PLoS Biology and PLoS Medicine, including:

Continue reading

The Best Life Science Blogs in The Scientist

The good folks at The Scientist asked a few of us to recommend some of the best and most interesting life science blogs. We have done so and the article is now online:

So, we at The Scientist are asking you to help compile the first list of the best life science blogs. Tell us what your favorite life science blogs are and why by clicking the button and leaving a comment, and we will publish a list of the most popular choices across the different areas of life sciences. With your help we hope to provide a list of who is currently hot in the science blogosphere, and why you should be reading them.

The best thing is that you can have your say as well – recommend your own favourites at this form. If a discussion about this goes on your blog, feel free to paste the URL in the form as well:

To start things off, we’ve asked some of the best known science bloggers to nominate some of their favorite blogs. Add to the list by posting your choices here, and these will appear below the list in the comments section.
In the spirit of blog-like openness, we hope people discuss their favorite science blogs elsewhere. If people on your blog are having an interesting discussion thread about this, then post a link to that page, and we’ll count those suggestions too.

So, fire away – what are your favourites?

Update:
Attila Csordas (also here), PZ Myers, Phillip Torrone, Abel PharmBoy, Alex Palazzo, Chris Patil, Mo Costandi, Tara Smith, Alan Cann, Deepak Singh, Brian Switek, John Hawks, Carl Zimmer, Orac, Terry, Bug Girl and others link to the article and in some cases suggest additional blogs.
Chad Orzel notices that not everybody is clear that the listing is of LIFE science blogs, not all science blogs. Biology and medicine only, this time around.
As expected, somebody suggested ‘Uncommon Descent’, ‘Evolution News and Views’ and ‘ID the Future’ which are, by definition, not science blogs.
Grrrlscientist, Sheril Kirshenbaum, Karmen Franklin and Zuska notice that none of the people asked are women. I wish I knew that this was going to be the case when I was asked. Although two out of my three suggestions are blogs written by women (The Anterior Commissure and Pondering Pikaia), I would have added more, starting perhaps with Notes from Ukraine, Bootstrap Analysis, Biology in Science Fiction, Dr.Petra, Bioephemera, Invasive Species Blog, Cyberspace Rendezvous, Science Made Cool, N@ked Under My Lab Coat, Easternblot, Well-Timed Period, Intueri, Emergiblog and Eye on DNA, just to begin with.
So, go there and add some female bloggers in the comments!

Yes, delay the school starting times

From the Independent:

The head has identified research which says that teenagers would be more likely to take in what they are learning if they started school two hours later. He is considering changing the school timetable for sixth-formers as a result.
“We have always assumed that learning early in the morning is best, probably because it is best for young children and adults,” he writes. ” Unfortunately, it is not true for teenagers. When teenagers are woken up at our morning time, their brain tells them they should be asleep. So they use stimulants such as coffee and cigarettes to get themselves awake. But at night, when we go to sleep, their neurological clock tells them it’s not time to sleep so they drink alcohol or take drugs to get them to sleep.
“Schools and universities only make it worse, he adds. The importance of neurological patterns of time as a factor in our learning and our lives has largely been ignored. We need to fit learning to these patterns of times. ”

(Hat-tip: nbm)
Related….

Bring back the Office of Technology Assessment!

Blog about it, contact your Senators, and contact the Presidential candidates. Let’s put some pressure on!
See what Mark Hoofnagle (and again) says.
Mike Dunford, PZ Myers (and again) and John Wilkins and their commenters have more (including all the contact information you’ll ever need).

Today’s Carnivals

Grand Rounds 3.52 are up on Six Until Me.
Carnival of the Green #95 is up on Green Style Mag.
The latest Carnival of the Godless is up on Ain’t Christian.

I heard that badmouthing Microsoft is good for traffic…

The program of the Microsoft/RENCI conference is now up. They would not let me give a talk, but I’ll have to make a poster (using the darned MS Power Point, I guess #$%^&*) which makes me pretty mad. Heck, there is some unknown talking about science blogs instead of me. Who made this decision?
Compared to the organizers of every other meeting this year, from SciFoo, to ConvergeSouth, to ASIS&T, to the panel at Harvard (and yes, our own Science Blogging Conference), these guys are positively Palaeolitic in their attitude – from the haughtily-official looking site, to the very idea of submitting ‘abstracts’ (not to mention that this is done via a cumbersome submission form), it appears they barely scratched Web 1.0, yet they want to discuss Web 2.0.
Perhaps I should withdraw my poster and just go and schmooze with the likes of Timo Hannay and Jean Claude-Bradley instead, and try to actually teach some people there about Science 2.0 in the hallways.
Or perhaps I am just in a really bad mood today….and should be back to my usual sunny self by tomorrow.

The State of Life Sciences

The State of Life Sciences in North Carolina, that is.

ClockQuotes

Men talk of killing time, while time quietly kills them.
– Dion Boucicalt

My Picks From ScienceDaily

Cyprian Honeybees Kill Their Enemy By Smothering Them:

For the first time, researchers have discovered that when Cyprian honeybees mob and kill their arch enemy, the Oriental hornet, the cause of death is asphyxiation. They reported their findings in Current Biology.

More
Cell Death In Sparrow Brains May Provide Clues In Age-related Human Diseases:

A remarkable change takes place in the brains of tiny songbirds every year, and some day the mechanism controlling that change may help researchers develop treatments for age-related degenerative diseases of the brain such as Parkinson’s and dementia.

Which is very interesting to people who don’t care at all about human medicine, but one gotta sell the study to the media somehow…
New Light Shed On Hybrid Animals:

What began more than 50 years ago as a way to improve fishing bait in California has led a University of Tennessee researcher to a significant finding about how animal species interact and that raises important questions about conservation. In the middle of the 20th century, local fishermen who relied on baby salamanders as bait introduced a new species of salamander to California water bodies. These Barred Tiger salamanders came into contact with the native California Tiger salamanders, and over time the two species began to mate.

How Some Algae Tolerate Very Salty Environments:

Researchers have identified unique proteins that allow a unicellular alga called Dunaliella salina to proliferate in environments with extreme salt content. These results might provide ways to help crop plants resist the progressive accumulation of salt in soil, which is a major limitation for agricultural productivity worldwide.

Thank you!

Dr.Tatiana.jpgA dear reader checked out my amazon wish-list and sent me Dr.Tatiana’s Sex Advice to All Creation, a book I wanted for a long time. Thank you!

Textbooks

There have been a couple of recent posts about textbooks lately. Jim Fiore started it all with a look at the textbook business from the perspective of the authors and students, looking primarily at the problem of money. One sentence really hit me, though:

The problem with a large, institutionalized used book market is that it completely cuts out the publisher and the author.

In a larger economy, it is called ‘stock market’. When you buy stocks, most often you will be buying them from a broker, not directly from the company. In other words, you are entering the used-stocks market. You are investing, but not into the company. Yet, the worth of a company is measured by the way its stocks are doing on this second-hand stock market. Only about 6% of the stocks in any given year are sold by the businesses themselves, i.e., the money invested in those stocks go back to the company which can then use it for R&D or for PR or for salaries, etc. Many old, well-established companies have not sold any new stocks in decades. This is as if the performance of, for instance, Ford is measured not in the sales of new cars, but in the re-sale value of the second-hand cars. Ford does not get a penny out of any of those transactions, can do very little to influence that market, yet it is required to do whatever it takes to increase the worth of its stock despite of no money coming in. The stockowners demand it, without ever giving back anything to the company. So, the CEOs slash and cut left and right, trying to get growth without having anything coming back in with which to water the plant. This is much better explained in this book (written by a small business owner and no enemy of capitalism) by Marjorie Kelly.
But, back to the textbooks. PZ Myers looks at the business from the perspective of a teacher:

It makes it difficult for students to sell off their used textbooks, it gives faculty the headache of having to constantly update their assignments, and if you allow your students to use older editions, it means we have to maintain multiple assignments. It’s extraordinarily annoying, and to no good purpose at the university (to great purpose at the publisher, though).

Jim responds:

In the arena of science and engineering there are issues with the fairly narrow audience and resultant low volume, and some difficulties with the used book market. There is, of course, the issue of the publishers. I am going to risk having my snout slapped by biting the hand that feeds me, but hey, I noticed something the other day that has my head spinning anyway.

But David Warlick goes further. If you decide to abandon or downgrade the textbooks for your classes, and start using the Web instead, you cannot just let the students go on a wild hunt. They will come up with stuff of questionable quality. With a textbook, it’s easy – it is a text that is approved by you as a teacher and by your colleagues who wrote it, edited it, and promoted it to institutions and school districts. Students know that the textbook is to be trusted, thus they do not need to learn the skills of critically evaluating it. But if they have to find their own sources, they need to learn how to separate the wheat from the chaff:

We teach from textbooks, from reference books, from journals, online databases, and from our own educated expertise. It’s part of our arsenal, as teachers, to help us instill confidence in the sources of that which we are teaching. I’m not saying that textbooks, reference books, and commercial databases are bad, and that we shouldn’t use them. They are enormously valuable. But we’re missing something that’s very important when we rely so exclusively on carefully packaged content and then lament that our students and children rely so readily on Google.
We have to practice what we preach, and we have to practice it out loud!
At the same time that we continue to use our textbooks (or what ever they evolve into), reference works, databases, and our own expertise, we should also bring in, at every opportunity, content and resources that we have found, evaluated, processed, and prepared for teaching and learning, and that we should include conversations about how we found it, evaluated, and processed it. If the are seeing us, every day, asking the questions that are core to being literate today, then perhaps they will not only develop the skills of critical evaluation, but also the habits.

The discussion in the comments is quite contentious there, actually. What do you think?

Scienceblogs taking over Europe!

Seed Media Group, publisher of the Seed Magazine and the Seed Scienceblogs (the site you are on right now), made an announcement last week (PDF) about its new international partnership with Hubert Burda Media conglomerate:

The partnership will initially lead to the European development of ScienceBlogs, the largest online science community (www.scienceblogs.com). Since its launch in January 2006 by Seed Media Group, ScienceBlogs has grown to include 65 blogs across all areas of science, and attracted more than 1.7 million visits in August (Google Analytics), its twentieth straight month of growth. ScienceBlogs has seen its traffic grow by more than 500 percent since launch, with 30 percent now coming from outside the United States.
“We are excited to be entering the European market with Hubert Burda Media, a company that shares our values and that we consider to be among the most visionary and forward-thinking in the media industry,” said Adam Bly, founder and CEO of Seed Media Group. “Today marks an important first step in Seed Media Group’s international expansion.”
“We see this partnership as a chance to help grow a global digital community of high social relevance. We share Seed Media Group’s belief that ‘Science is Culture’ and are delighted to now be associated with an organization at the forefront of this cultural shift,” said Dr. Marcel Reichart, Managing Director, R&D, Marketing & Communications, Hubert Burda Media.

This is great news! First – don’t worry: nobody is getting fired or “downsized” and you will not see any obvious changes here any time soon. But there will be great changes in the future, i.e., more European blogs (perhaps even in languages other than English at some point in the future) and even more European readers. Stay tuned.

Bloggers for Peer Review icon finals

Dave alerts us that the number of entries has ben winnowed to the top three finalists. Check them out and suggest modifications at the BPR3 blog. And vote:

Science Blogging Survey

There is a new online survey up, designed by some of my SciBlings, about the background and online habits of science bloggers and science blog readers (not just scienceblogs.com, but all science blogs). Please take a minute to respond:

This survey attempts to access the opinions of bloggers, blog-readers, and non-blog folk in regards to the impact of blogs on the outside world. The authors of the survey are completing an academic manuscript on the impact of science blogging and this survey will provide invaluable data to answer the following questions:
Who reads or writes blogs?
What are the perceptions of blogging, and what are the views of those who read blogs?
How do academics and others perceive science blogging?
What, if any, influence does science blogging have on science in general?
Please consider participating in the survey as an act of ‘internet solidarity’! It will likely take 10 minutes, and a bit more if you are a blogger yourself. We thank you in advance.

Just click here and answer a few questions, please – it is for a good cause, but you’ll have to wait a little until everything is revealed.

Deep Sea News on TV!

My SciBling Craig McClain is one of the people considered by a major cable channel to host a show about the deep sea. You can help him get this cool job by showing your support in the comments on this post. Please do.

ClockQuotes

It is a commonplace observation that work expands so as to fill the time available for its completion.
– C. Northcote Parkinson, Parkinson’s Law, 1958