A new medical research blog

Introducing Beaker, inspired by our panel at AAAS a couple of months ago. Go take a look.

New and Exciting in PLoS this week

Four out of seven PLoS journals published new articles today. Under the fold are those I personallyt found most interesting and/or ‘bloggable’. As always, you should rate the articles, post notes and comments and send trackbacks when you blog about the papers. You can now also easily place articles on various social services (CiteULike, Mendeley, Connotea, Stumbleupon, Facebook and Digg) with just one click. Here are my own picks for the week – you go and look for your own favourites:

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Born Today – Innovating for our future: #140conf (video)

Alice Wilder (@alicewilder) – Psychologist and maker of Kidos, Blues Clues, Super Why and Think It Ink It
Beth Blecherman (@techmama) – Cofounder of SiliconValleyMoms and Editor CoolMomTech
Maya Bisineer (@thinkmaya) – founder of @memetales
Stephanie Aaronson (@SAGalluch) – Senior Director, PBS Kids Communications:

Social Media for Social Good: #140conf (video)

Marc Sirkin (@autismspeaks) – Chief Community Officer, Autism Speaks
Ray Chambers (@Malaria_Envoy) – The United Nations Secretary-General’s Special Envoy for Malaria
Stefanie Michaels (@adventuregirl) – Travel Expert:

Clock Quotes

I have always been waiting for something better – sometimes to see the best I had snatched from me.
– Dorothy Reed Mendenhall

A conversation with Andy Dixon: What the prison yard & twitter have in common: #140conf (video)

Andy Dixon (@andydixn) – ex-convict with convictions stopping cycle generational incarceration, spent 27 years in prison.
twittterer/singer/songwriter/author Geo Geller (@geogeller) – Artist, Photographer, Humanitarian

New and Exciting in PLoS ONE

There are 31 new articles in PLoS ONE today. As always, you should rate the articles, post notes and comments and send trackbacks when you blog about the papers. You can now also easily place articles on various social services (CiteULike, Mendeley, Connotea, Stumbleupon, Facebook and Digg) with just one click. Here are my own picks for the week – you go and look for your own favourites:
A Dominance Hierarchy of Auditory Spatial Cues in Barn Owls:

Barn owls integrate spatial information across frequency channels to localize sounds in space. We presented barn owls with synchronous sounds that contained different bands of frequencies (3-5 kHz and 7-9 kHz) from different locations in space. When the owls were confronted with the conflicting localization cues from two synchronous sounds of equal level, their orienting responses were dominated by one of the sounds: they oriented toward the location of the low frequency sound when the sources were separated in azimuth; in contrast, they oriented toward the location of the high frequency sound when the sources were separated in elevation. We identified neural correlates of this behavioral effect in the optic tectum (OT, superior colliculus in mammals), which contains a map of auditory space and is involved in generating orienting movements to sounds. We found that low frequency cues dominate the representation of sound azimuth in the OT space map, whereas high frequency cues dominate the representation of sound elevation. We argue that the dominance hierarchy of localization cues reflects several factors: 1) the relative amplitude of the sound providing the cue, 2) the resolution with which the auditory system measures the value of a cue, and 3) the spatial ambiguity in interpreting the cue. These same factors may contribute to the relative weighting of sound localization cues in other species, including humans.

Human Direct Actions May Alter Animal Welfare, a Study on Horses (Equus caballus):

Back pain is the cause of bad welfare in humans and animals. Although vertebral problems are regularly reported on riding horses, these problems are not always identified nor noticed enough to prevent these horses to be used for work. Nineteen horses from two riding centres were submitted to chiropractic examinations performed by an experienced chiropractor and both horses’ and riders’ postures were observed during a riding lesson. The results show that 74% of horses were severely affected by vertebral problems, while only 26% were mildly or not affected. The degree of vertebral problems identified at rest was statistically correlated with horses’ attitudes at work (neck height and curve), and horses’ attitudes at work were clearly correlated with riders’ positions. Clear differences appeared between schools concerning both riders’ and horses’ postures, and the analysis of the teachers’ speech content and duration highlighted differences in the attention devoted to the riders’ position. These findings are to our knowledge the first to underline the impact of riding on horses’ back problems and the importance of teaching proper balance to beginner riders in order to increase animals’ welfare.

A Currency for Offsetting Energy Development Impacts: Horse-Trading Sage-Grouse on the Open Market:

Biodiversity offsets provide a mechanism to compensate for unavoidable damages from new energy development as the U.S. increases its domestic production. Proponents argue that offsets provide a partial solution for funding conservation while opponents contend the practice is flawed because offsets are negotiated without the science necessary to backup resulting decisions. Missing in negotiations is a biologically-based currency for estimating sufficiency of offsets and a framework for applying proceeds to maximize conservation benefits. Here we quantify a common currency for offsets for greater sage-grouse (Centrocercus urophasianus) by estimating number of impacted birds at 4 levels of development commonly permitted. Impacts were indiscernible at 1-12 wells per 32.2 km2. Above this threshold lek losses were 2-5 times greater inside than outside of development and bird abundance at remaining leks declined by −32 to −77%. Findings reiterated the importance of time-lags as evidenced by greater impacts 4 years after initial development. Clustering well locations enabled a few small leks to remain active inside of developments. Documented impacts relative to development intensity can be used to forecast biological trade-offs of newly proposed or ongoing developments, and when drilling is approved, anticipated bird declines form the biological currency for negotiating offsets. Monetary costs for offsets will be determined by true conservation cost to mitigate risks such as sagebrush tillage to other populations of equal or greater number. If this information is blended with landscape level conservation planning, the mitigation hierarchy can be improved by steering planned developments away from conservation priorities, ensuring compensatory mitigation projects deliver a higher return for conservation that equate to an equal number of birds in the highest priority areas, provide on-site mitigation recommendations, and provide a biologically based cost for mitigating unavoidable impacts.

Characterisation of Nitric Oxide Synthase in Three Cnidarian-Dinoflagellate Symbioses:

Nitric oxide synthase (NOS) is an enzyme catalysing the conversion of L-arginine to L-citrulline and nitric oxide (NO), the latter being an essential messenger molecule for a range of biological processes. Whilst its role in higher vertebrates is well understood little is known about the role of this enzyme in early metazoan groups. For instance, NOS-mediated signalling has been associated with Cnidaria-algal symbioses, however controversy remains about the contribution of enzyme activities by the individual partners of these mutualistic relationships. Using a modified citrulline assay we successfully measured NOS activity in three cnidarian-algal symbioses: the sea anemone Aiptasia pallida, the hard coral Acropora millepora, and the soft coral Lobophytum pauciflorum, so demonstrating a wide distribution of this enzyme in the phylum Cnidaria. Further biochemical (citrulline assay) and histochemical (NADPH-diaphorase) investigations of NOS in the host tissue of L. pauciflorum revealed the cytosolic and calcium dependent nature of this enzyme and its in situ localisation within the coral’s gastrodermal tissue, the innermost layer of the body wall bearing the symbiotic algae. Interestingly, enzyme activity could not be detected in symbionts freshly isolated from the cnidarians, or in cultured algal symbionts. These results suggest that NOS-mediated NO release may be host-derived, a finding that has the potential to further refine our understanding of signalling events in cnidarian-algal symbioses.

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ScienceOnline2010 – interview with Hilary Maybaum

Continuing with the tradition from last two years, I will occasionally post interviews with some of the participants of the ScienceOnline2010 conference that was held in the Research Triangle Park, NC back in January. See all the interviews in this series here. You can check out previous years’ interviews as well: 2008 and 2009.
Today, I asked Hilary Maybaum from i.e.science to answer a few questions.
Welcome to A Blog Around The Clock. Would you, please, tell my readers a little bit more about yourself? Where are you coming from (both geographically and philosophically)? What is your (scientific) background?
I’m an East Coaster from the U.S., originally and ultimately a New Yorker, but I spent 14 years of my life in Hawaii. Those years shaped most of scientific approach to the world, for it was there that I earned my Master of Science degree in oceanography. I staged my early training as a scientist at the other side of the world — Woods Hole, Massachusetts.
Tell us a little more about your career trajectory so far: interesting projects past and present?
I figure I’m on career #9 or 10 at this stage. My wayward trajectory has been: Teaching Assistant –> Bartender –> Instructor –> Author –> Oceanographer –> Environmental Consultant –> Science Editor –> Grant Director –> Business Owner (Science Writer)
What is taking up the most of your time and passion these days? What are your goals?
Running my business, www.iescience.com. I provide science writing and editing services, mostly for educational publishers. I write a lot of textbook material (print) and I develop online activities for publishers’ companion Web sites. Tweeting and blogging are also part of my current career. I still hope I’ll get paid by someone like Woods Hole Oceanographic Institution to manage their social media networks and Web content, but I’m happiest working for myself. I’ve yet to write a business plan, though. After three successful years, it would probably be a good idea. But I’m so good at procrastinating.
What aspect of science communication and/or particular use of the Web in science interests you the most?
The evolution of science communication interests me immensely. I’ve seen a lot of changes over the past 20+ years, and I like what I’m seeing now. For example, the other day I was visiting the new online catalog of whale flukes for Southeast Alaska and noticed that full PDFs were attached to each scholarly article referenced on the site. How cool is that! I wish more people would think to include full article citations in their science writing and online journalism, because that’s the best way for people to educate themselves on topics of scientific interest. I know, Bora, that you are an advocate of this and I praise you for your efforts.
How does (if it does) blogging figure in your work? How about social networks, e.g., Twitter, FriendFeed and Facebook? Do you find all this online activity to be a net positive (or even a necessity) in what you do?
I mentioned these earlier, so yes, they are a net positive and, I feel, a necessity in the sense that blogging and tweeting stretch my outreach and networking abilities. I’ll tell you what, though. The National Association of Science Writers doesn’t agree with me. I sent them blog clips from my site, Wet to support my membership application, but NASW promptly rejected them. According to NASW’s director, “self-published or personal blogs do not fit the criteria for clips.”
Despite this official rejection, I have found social networking to be very helpful in non-writing endeavors, such as finding editorial assistants, discovering workshops and conferences (I’m looking at you, ScienceOnline 2010), and even job searching. But the best part for me about social networking is the ability to connect and reconnect with scientists — my favorite group of people!
When and how did you first discover science blogs? What are some of your favourites? Have you discovered any cool science blogs by the participants at the Conference?
I’m an old fan of Seed Magazine; hence, I found ScienceBlogs many years ago. I have recently (in the past 6 months) discovered a plethora of cool science blogs (yours among them, of course!) as a result of my connections on Twitter.
What was the best aspect of ScienceOnline2010 for you? Any suggestions for next year? Is there anything that happened at this Conference – a session, something someone said or did or wrote – that will change the way you think about science communication, or something that you will take with you to your job, blog-reading and blog-writing?
What I liked best about ScienceOnline 2010 were the physical/mental/spiritual aspects of being among like-minded people of all ages and sizes. I found it to be highly energizing. I think, too, that it was so well organized, with lots of play time and technological opportunities, it was as if every minute was a gift. And to top it all off, I got to sit among an entire table of marine scientists at dinner! That hasn’t happened to me in decades!! So thanks again, Bora and Anton, for a job well done and with heart.
It was so nice to meet you in person and thank you for the interview. I hope to see you again next January.
Hilary Meybaum pic.jpg
[Hilary Maybaum aboard the Alvin submersible]

Book Authors Panel: #140conf (video)

Don Lafferty (@donlafferty) – Writer, Story Teller, and Social media Marketing Consultant
Imal Wagner (@imalwagner) – PR for 140 conf & Jeff Pulver
John Kremer (@JohnKremer) – Author, 1,001 Ways to Market Your Books
Michael Tasner (@tazsolutions) – Author, Marketing in the Moment 3.0 Marketing
Tim Ferriss (@tferriss) – Author, The Four Hour Work Week

Clock Quotes

Every time you go out on the ice, there are slight flaws. You can always think of something you should have done better. These are the things you must work on.
– Dorothy Hamill

New and Exciting in PLoS this week

Four of seven PLoS journals published today. I think these, below, are the most interesting and bloggable. As always, you should rate the articles, post notes and comments and send trackbacks when you blog about the papers. You can now also easily place articles on various social services (CiteULike, Mendeley, Connotea, Stumbleupon, Facebook and Digg) with just one click. Here are my own picks for the week – you go and look for your own favourites:

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Urban Raptors – the new PRI/BBC/World podcast and forum

This week, Dr.Bird answers questions about birds – the raptors, especially those living inside of big cities. Listen to the podcast and join the discussion in the forums:

Listen to an interview about city-dwelling raptors. Download MP3
David Bird is a wildlife biologist at McGill University in Montreal. He directs the university’s Avian Science and Conservation Center.
Bird is editor of the the new book Birds of Canada. He also wrote The Bird Almanac: A Guide to Essential Facts and Figures of the World’s Birds.
On our radio program, we aired a story about how raptors — birds of prey — are struggling to survive in Beijing. You can listen to that story here.
Unlike Beijing, some cities are providing good habitat for raptors:
* Peregrine falcons now nest in churches and skyscrapers in North American and European cities.
* Goshawks are a common sight in Hamburg, Germany.
* Sparrowhawks are found in abundance in Nairobi, Kenya.
Learn about the thrills and perils of city life for raptors, and bring your own thoughts and questions to David Bird. He’s our guest in the Forum through Friday, May 7th. The conversation is just to the right.
* How can you make your community more raptor-friendly?
* Do you live next door to a bird of prey? Tell us about your experiences.
* Have you been involved with conserving raptors in your city or neighborhood?

Secrecy, Privacy, Publicy – Stowe Boyd: #140conf (video)

Stowe Boyd (@stoweboyd) – analyst, advisor, futurist, and researcher:

Augmented Twitter: A Conversation with Three Futurists: #140conf (video)

FakeJerry Paffendorf (@WELLO) – Artist, futurist, entrepreneur. joshua fouts (@josholalia) – Cultural relations futurist at the crossroads of emergent media, digital diplomacy, games, virtual worlds and storytelling.
Rita J. King (@RitaJKing) – Innovator-in-Residence, IBM Analytics Virtual Center, #SmarterWork project.
Tish Shute (@TishShute) – Transmedia Producer and enthusiast for our networked potential to make a better world.

Clock Quotes

Of course I don’t always enjoy being a mother. At those times my husband and I hole up somewhere in the wine country, eat, drink, make mad love and pretend we were born sterile and raise poodles.
– Dorothy DeBolt

New and Exciting in PLoS ONE

There are 22 new articles in PLoS ONE today. As always, you should rate the articles, post notes and comments and send trackbacks when you blog about the papers. You can now also easily place articles on various social services (CiteULike, Mendeley, Connotea, Stumbleupon, Facebook and Digg) with just one click. Here are my own picks for the week – you go and look for your own favourites:
Bee Threat Elicits Alarm Call in African Elephants:

Unlike the smaller and more vulnerable mammals, African elephants have relatively few predators that threaten their survival. The sound of disturbed African honeybees Apis meliffera scutellata causes African elephants Loxodonta africana to retreat and produce warning vocalizations that lead other elephants to join the flight. In our first experiment, audio playbacks of bee sounds induced elephants to retreat and elicited more head-shaking and dusting, reactive behaviors that may prevent bee stings, compared to white noise control playbacks. Most importantly, elephants produced distinctive “rumble” vocalizations in response to bee sounds. These rumbles exhibited an upward shift in the second formant location, which implies active vocal tract modulation, compared to rumbles made in response to white noise playbacks. In a second experiment, audio playbacks of these rumbles produced in response to bees elicited increased headshaking, and further and faster retreat behavior in other elephants, compared to control rumble playbacks with lower second formant frequencies. These responses to the bee rumble stimuli occurred in the absence of any bees or bee sounds. This suggests that these elephant rumbles may function as referential signals, in which a formant frequency shift alerts nearby elephants about an external threat, in this case, the threat of bees.

A Geometrical Perspective for the Bargaining Problem:

A new treatment to determine the Pareto-optimal outcome for a non-zero-sum game is presented. An equilibrium point for any game is defined here as a set of strategy choices for the players, such that no change in the choice of any single player will increase the overall payoff of all the players. Determining equilibrium for multi-player games is a complex problem. An intuitive conceptual tool for reducing the complexity, via the idea of spatially representing strategy options in the bargaining problem is proposed. Based on this geometry, an equilibrium condition is established such that the product of their gains over what each receives is maximal. The geometrical analysis of a cooperative bargaining game provides an example for solving multi-player and non-zero-sum games efficiently.

Potential Hazard to Human Health from Exposure to Fragments of Lead Bullets and Shot in the Tissues of Game Animals:

Lead is highly toxic to animals. Humans eating game killed using lead ammunition generally avoid swallowing shot or bullets and dietary lead exposure from this source has been considered low. Recent evidence illustrates that lead bullets fragment on impact, leaving small lead particles widely distributed in game tissues. Our paper asks whether lead gunshot pellets also fragment upon impact, and whether lead derived from spent gunshot and bullets in the tissues of game animals could pose a threat to human health. Wild-shot gamebirds (6 species) obtained in the UK were X-rayed to determine the number of shot and shot fragments present, and cooked using typical methods. Shot were then removed to simulate realistic practice before consumption, and lead concentrations determined. Data from the Veterinary Medicines Directorate Statutory Surveillance Programme documenting lead levels in raw tissues of wild gamebirds and deer, without shot being removed, are also presented. Gamebirds containing ≥5 shot had high tissue lead concentrations, but some with fewer or no shot also had high lead concentrations, confirming X-ray results indicating that small lead fragments remain in the flesh of birds even when the shot exits the body. A high proportion of samples from both surveys had lead concentrations exceeding the European Union Maximum Level of 100 ppb w.w. (0.1 mg kg−1 w.w.) for meat from bovine animals, sheep, pigs and poultry (no level is set for game meat), some by several orders of magnitude. High, but feasible, levels of consumption of some species could result in the current FAO/WHO Provisional Weekly Tolerable Intake of lead being exceeded. The potential health hazard from lead ingested in the meat of game animals may be larger than previous risk assessments indicated, especially for vulnerable groups, such as children, and those consuming large amounts of game.

Epigenetic Variation in Mangrove Plants Occurring in Contrasting Natural Environment:

Epigenetic modifications, such as cytosine methylation, are inherited in plant species and may occur in response to biotic or abiotic stress, affecting gene expression without changing genome sequence. Laguncularia racemosa, a mangrove species, occurs in naturally contrasting habitats where it is subjected daily to salinity and nutrient variations leading to morphological differences. This work aims at unraveling how CpG-methylation variation is distributed among individuals from two nearby habitats, at a riverside (RS) or near a salt marsh (SM), with different environmental pressures and how this variation is correlated with the observed morphological variation. Significant differences were observed in morphological traits such as tree height, tree diameter, leaf width and leaf area between plants from RS and SM locations, resulting in smaller plants and smaller leaf size in SM plants. Methyl-Sensitive Amplified Polymorphism (MSAP) was used to assess genetic and epigenetic (CpG-methylation) variation in L. racemosa genomes from these populations. SM plants were hypomethylated (14.6% of loci had methylated samples) in comparison to RS (32.1% of loci had methylated samples). Within-population diversity was significantly greater for epigenetic than genetic data in both locations, but SM also had less epigenetic diversity than RS. Frequency-based (GST) and multivariate (βST) methods that estimate population structure showed significantly greater differentiation among locations for epigenetic than genetic data. Co-Inertia analysis, exploring jointly the genetic and epigenetic data, showed that individuals with similar genetic profiles presented divergent epigenetic profiles that were characteristic of the population in a particular environment, suggesting that CpG-methylation changes may be associated with environmental heterogeneity. In spite of significant morphological dissimilarities, individuals of L. racemosa from salt marsh and riverside presented little genetic but abundant DNA methylation differentiation, suggesting that epigenetic variation in natural plant populations has an important role in helping individuals to cope with different environments.

Effect of Parenchymal Stiffness on Canine Airway Size with Lung Inflation:

Although airway patency is partially maintained by parenchymal tethering, this structural support is often ignored in many discussions of asthma. However, agonists that induce smooth muscle contraction also stiffen the parenchyma, so such parenchymal stiffening may serve as a defense mechanism to prevent airway narrowing or closure. To quantify this effect, specifically how changes in parenchymal stiffness alter airway size at different levels of lung inflation, in the present study, we devised a method to separate the effect of parenchymal stiffening from that of direct airway narrowing. Six anesthetized dogs were studied under four conditions: baseline, after whole lung aerosol histamine challenge, after local airway histamine challenge, and after complete relaxation of the airways. In each of these conditions, we used High resolution Computed Tomography to measure airway size and lung volume at five different airway pressures (0, 12, 25, 32, and 45 cm H2O). Parenchymal stiffening had a protective effect on airway narrowing, a fact that may be important in the airway response to deep inspiration in asthma. When the parenchyma was stiffened by whole lung aerosol histamine challenge, at every lung volume above FRC, the airways were larger than when they were directly challenged with histamine to the same initial constriction. These results show for the first time that a stiff parenchyma per se minimizes the airway narrowing that occurs with histamine challenge at any lung volume. Thus in clinical asthma, it is not simply increased airway smooth muscle contraction, but perhaps a lack of homogeneous parenchymal stiffening that contributes to the symptomatic airway hyperresponsiveness.

Hashtag Art

I first saw Hashtag Art (on Twitter) at #140conf last week. These guys start with a picture, as a canvass. Then, as people tweet using a particular hashtag, their avatars become pieces of the mosaic, gradually building the image as event is happening. It took about two days, the duration of the meeting, to fill the entire image up.
The image, as it was slowly developing, was occasionally projected on the screen behind the speakers. The Hashtag Art guys were also set up in the side room (where coffee and power-strips were), projecting the image onto a screen.
When I approached them and they realized who I was they got very excited, to my astonishment, to meet me…..”Oh, you are @BoraZ!”. What?
Well, each person’s avatar is supposed to appear in the mosaic only once. But my avatar,, apparently, appeared something like 162 times. It was a glitch of some sort, and they had no idea how and why that happened. They asked me – but what do I know, I am so non-tech-savvy, I was more surprised than they were. But we agreed that if and when they discover what the bug was, they would tell me but would not remove the 161 extra avatars as that would leave an ugly black hole in the image. Good for me – by using the magnifying tool and placing the cursor over my avatar you can see a tweet of mine. If you then click on my avatar, you will go to my Twitter profile. Nice!
See for yourself!
I want this done at ScienceOnline2011 in January…..

Liz Strauss – Every Saloonkeeper Knows Monitoring Isn’t the Same as Listening: #140conf (video)

Liz Strauss (@lizstrauss) – Founder of SOBCon, brand strategist:

Open Laboratory 2010 – submissions so far

The Submission form is here so you can get started. Under the fold are entries so far, as well as buttons and the bookmarklet. The instructions for submitting are here.

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Twitter vs. Telecom: Friend or Foe? – Tal Givoly: #140conf (video)

Tal Givoly (@givoly) – Chief Scientist, Amdocs:

Clock Quotes

I never think when I write. Nobody can do two things at the same time and do them both well.
– Don Marquis

WWW2010 conference this week in Raleigh, NC

2010-logo-small1.jpgWWW2010 is starting tonight. Interested to know more about it? Sure, here’s the brief history:

The World Wide Web was first conceived in 1989 by Tim Berners-Lee at CERN in Geneva, Switzerland. The first conference of the series, WWW1, was held at CERN in 1994 and organized by Robert Cailliau. The IW3C2 was founded by Joseph Hardin and Robert Cailliau later in 1994 and has been responsible for the conference series ever since. Except for 1994 and 1995 when two conferences were held each year, WWWn became an annual event held in late April or early May. The location of the conference rotates among North America, Europe, and Asia. In 2001 the conference designator changed from a number (1 through 10) to the year it is held; i.e., WWW11 became known as WWW2002, and so on.
The WWW Conference series aims to provide the world a premier forum for discussion and debate about the evolution of the Web, the standardization of its associated technologies, and the impact of those technologies on society and culture. The conferences bring together researchers, developers, users and commercial ventures – indeed all who are passionate about the Web and what it has to offer.

Yup. this is the Web conference. See the schedule. And this year it is in my backyard, in Raleigh NC. Now, I do not have time nor money to attend the whole thing. But, the WWW2010 has a few simultaneous conferences happening at the same place and time, for more affordable prices, featuring some of the same people (and others one can bump into in the hallways) and some very exciting topics.
So, there is a Web Science Conference 2010 which has at least two interesting papers presented:
Understanding how Twitter is used to widely spread Scientific Messages (PDF) by Julie Letierce, Alexandre Passant, John Breslin and Stefan Decke, and Studying Scientific Discourse on the Web using Bibliometrics: A Chemistry Blogging Case Study (PDF) by Paul Groth and Thomas Gurney. Both papers will be given tomorrow, on Monday at 2pm. But I did not register for this part, so I cannot see these.
But I will go to the FutureWeb conference on Wednesday, Thursday and Friday – the registration also works for the Plenary Talks of the main WWW2010 conference. And I will livetweet and then blog from it all three days.
FutureWeb is on Twitter and Facebook. They will have daily video/written coverage and a blog. The hashtag is #fw2010.
The official hashtag for the main WWW2010 conference is #www2010 and for the other two co-conferences is #websci10 and #w4a10.

Why Twitter will Endure – David Carr: #140conf (video)

David Carr (@carr2n) – Writes Media Equation column, blogs @ Decoder & covers pop culture at NY Times:

Beautiful Antarctica feature on BoingBoing

Maggie Koerth-Baker, who I finally met in person at AAAS meeting, just designed an amazing feature on BoingBoing – the Antarctica:

It’s about the Antarctic Geospatial Information Center, a group of researchers based at the University of Minnesota who do the information processing and visualization that makes other research on the Frozen Continent possible. The story features some great details about life in Antarctica and tons of photos taken by the AGIC crew.
Quick fun fact: Do you know how researchers use satellite images to find packs of penguins? Turns out, they look for huge smears of brownish-red penguin poop across the white landscape.

It is wide – scroll the page left and right, not just up and down. Look at the amazing pictures, and read the long comment thread at the bottom.

Ann Curry: #140conf (video)

Ann Curry (@AnnCurry) News Anchor on NBC’s Today Show and host of Dateline NBC

Also watch her backstage interview:

Clock Quotes

At this time of day, in the twilight, there is no wind. At this time there is only power.
– Don Juan to Carlos Castaneda

Real-Time News Gathering – #140conf (video)

Andy Carvin (@acarvin) – Senior strategist at NPR;
Eric Kuhn (@CNN) – Audience Interaction Producer, CNN;
Jennifer Preston (@NYT_JenPreston) – Social-Media Editor of The New York Times;
Ryan Osborn (@todayshow) – Producer, NBC’s TODAY:

Hello New York! – Dave Winer at #140conf (video)

This is what Dave Winer planned to say. This is what he ended up saying:

The 140conf

As you probably know, The Bride of Coturnix and I went to NYC last week to attend the 140conference organized by Jeff Pulver who I finally had a pleasure to meet in person.
The speaker line-up and the program schedule had to be slightly modified as a few people got stuck in Europe under the volcanic ash and could not come in time. But there were plenty of smart people in attendance who could readily jump in and join the panels in their place.
There were a total of about 1000 people the first day and only slightly fewer on the second day. There were only a handful people there who I’ve met before, e.g., Jay Rosen, Joe Trippi, Dave Winer (who must have left after his talk as I did not get to catch up with him at all), C.C. Chapman, and the only other ScienceOnline2010 attendee there – Cassie Rodenberg.
So, this was a great opportunity to meet new people, including several who I have followed online for a long time, e.g., Tommy Jenkins, Jeff Jarvis, Alex Howard, Susanna Speier, Steven
Anderson, Lauren Rae Bertolini, Mary Wells, Eric Sheninger and many others. Angela Shelton was too popular and busy for me to get to meet in person, but we communicated on Twitter during the meeting. As she is a NC native, perhaps it will be relatively easy to invite her for one of the future events in the Triangle – TEDx, or Ignite, or The Monti…
I have already posted a few videos from the conference (check them all under the 140conf category) and will post a few more later, but you can check them all out – they are collected here.
There was a palpable energy in the air, lots of excitement, and a bunch of excellent – both informative and inspiring – talks and panels. Unlike last year, there was nobody talking about science. I hope that is remedied next time (there is a 140conf somewhere in the world almost every month) and I have offered to do it myself if Jeff is interested for one of the upcoming events (perhaps the one in D.C.). One of the often heard words was ‘serendipity’ and attending the various sessions was an exercise in serendipity. I may not be interested in, and thus not following, what is happening in the areas of fashion, sports, real estate or comic strips, but listening to people from these industries, hearing how they deal with the changes that the real-time Web has brought, seeing some of their practices, was most definitely useful for me – I could use some of that thinking and see how to apply it to what I do.
Of course, as a conference organizer, I kept watching the little details behind the scenes, comparing how Jeff organized things to what we do at ScienceOnline, see what he did better than we do so we can adopt it for next year (as well as being happy about the details where we do it better already).
You already know my thinking about organizing and presenting at modern conferences, but this one also provoked an excellent new post about it, pointing the strengths and weaknesses of the 140conf model using tweets by Andy Carvin. See also another related post. What they did better than we do is have everything livestreamed and then have each talk/session segment cut separately almost immediatelly and placed online for everyone to see – this is something we’ll try to do better next year. On the other hand, we had kick-ass wifi (#2 requirement for a successful conference) provided by SignalShare, while wifi was very scatchy at 140conf, especially the first day with more people in the audience, and everyone trying to get online (many gave up on wifi on the second day so there was more juice left for others). Coffee (#1 requirement for a successful conference) was flowing on the second day, but it was on-and-off on the first day, so in the end Cassie Rodenberg and I had to go accross the street to get some mocha for ourselves.
All-in-all this was a great conference, a very fun and useful experience, and a great networking opportunity for me. I’ll try to go again when it is nearby (e.g., DC or NYC or Boston) as well as try to bring it to the Triangle if I can find a good local venue and local sponsors.
Aside from the conference, Bride Of Coturnix and I had some time to just wonder around NYC as we like to do every year. My brother happened to be in town at the same time so we got to see him twice, as well as some of his friends I have been hearing about for 20 years and have not managed to meet in person until this week. And we have met our friends for two dinners, including Arikia Millikan (and her awesome room-mate), Cassie Rodenberg, Stacy Baker, Maia Szalavitz, Nancy Parmalee, Alla Katsnelson, Arvind Says and Byron Roberts – that was great fun.
jay1.jpg
[Jay Rosen speaking at #140conf NYC 2010]

ScienceOnline2010 – Rebooting Science Journalism in the Age of the Web (video) – Part 7

Rebooting Science Journalism in the Age of the Web – Ed Yong, Carl Zimmer, John Timmer, and David Dobbs
Saturday, January 16, 10:15 – 11:20am
Description: Our panel of journalist-blogger hybrids – Carl Zimmer, John Timmer, Ed Yimmer Yong, and David Dobbs- will discuss and debate the future of science journalism in the online world. Are blogs and mainstream media the bitter rivals that stereotypes would have us believe, or do the two sides have common threads and complementary strengths? How will the tools of the Internet change the art of reporting? How will the ongoing changes strengthen writing about science? How might these changes compromise or threaten writing about science? In a world where it’s possible for anyone to write about science, where does that leave professional science journalists? And who actually are these science journalists anyway?

Clock Quotes

Men talk of killing time, while time quietly kills them.
– Dion Boucicalt

New and Exciting in PLoS this week

Friday – when four out of seven PLoS journals publish new articles. Check them out. And as always, you should rate the articles, post notes and comments and send trackbacks when you blog about the papers. You can now also easily place articles on various social services (CiteULike, Mendeley, Connotea, Stumbleupon, Facebook and Digg) with just one click. Here are my own picks for the week – you go and look for your own favourites:

Continue reading

Tech in Education at #140conf (videos)

This week in NYC, at #140 conf, I was most impressed by the talks and panels about education, and the use of online technologies, Web, and particularly social networks like Twitter in the classroom. You know I am interested in this – just search my blog for names like “David Warlick” and “Stacy Baker”, or dig through my “Education” and “Science Education” categories. These videos are all short – 10 or 20 minutes long, so I strongly recommend you watch all four clips:
Chris Lehmann (@chrislehmann) – Social Media + Education:

Real Time Communication and Education: Aparna Vashisht (@Parentella) – Founder, Parentella (moderator) Kevin Jarrett (@kjarrett) – K-4 Technology Teacher Lisa Nielsen (@InnovativeEdu) – Educational Technologist – NYC Dept of Ed Mary Beth Hertz (@mbteach) – K-6 Computer Teacher and Technology Teacher Leader in Philadelphia:

Twitter and Animal Farm (and some 8th graders) – George Haines (@oline73) – Technology Teacher, Sts. Philip and James School, and his students:

Real-time web and Education #2: Eric Sheninger (@NMHS_Principal) – Principal of New Milford HS (NJ) Kyle B. Pace (@kylepace) – Teaching K-12 teachers about technology infusion Steven W. Anderson (@web20classroom) – Technology Educator, Blogger, Co-Creator of #edchat Tom Whitby (@tomwhitby) – Professor of English in Secondary Education:

Related posts:
ScienceOnline’09: Interview with Stacy Baker
ScienceOnline’09 – Saturday 10:15am
There is no need for a ‘Creepy Treehouse’ in using the Web in the classroom
Removing the Bricks from the Classroom Walls: Interview with David Warlick
Is our children learning?
This is bullshit: TEDxNYED talk by Jeff Jarvis (video)
Education 2.0
ScienceOnline’09 – interview with Erica Tsai
Podcastercon2006 – the Teaching Session
ScienceOnline’09 – interview with Elissa Hoffman
Teacher-philosophers in a fast-changing world
Using Blogs to Promote Science Literacy
Very young people blogging about science
Very young people blogging about science – let’s welcome them
Making it real: People and Books and Web and Science at ScienceOnline2010

Today’s carnivals

Scientia Pro Publica #26 is up on Genomics Law Report
The latest edition of The Accretionary Wedge is up on Mountain Beltway
The 135th Skeptic’s Circle is up on The Skeptical Teacher
Friday Ark #292 is up on Modulator

The 2010 Post with the Most blogging contest

The 2010 Post with the Most blogging contest is ongoing – there are nine entries so far, but not many from science bloggers. The blog post should combine original text, audio, image and/or video into a coherent multi-media whole.
Check it out and submit something you have done or seen on other blogs.

Unity without U is nity – Angela Shelton at #140conf (video)

Angela Shelton (@angelashelton), an Asheville NC native, gave a powerful talk at the 140conf in NYC this week:

Open Laboratory 2010 – submissions so far

Under the fold are entries so far, as well as buttons and the bookmarklet. The instructions for submitting are here.

Continue reading

ScienceOnline2010 – Rebooting Science Journalism in the Age of the Web (video) – Part 6

Rebooting Science Journalism in the Age of the Web – Ed Yong, Carl Zimmer, John Timmer, and David Dobbs
Saturday, January 16, 10:15 – 11:20am
Description: Our panel of journalist-blogger hybrids – Carl Zimmer, John Timmer, Ed Yimmer Yong, and David Dobbs- will discuss and debate the future of science journalism in the online world. Are blogs and mainstream media the bitter rivals that stereotypes would have us believe, or do the two sides have common threads and complementary strengths? How will the tools of the Internet change the art of reporting? How will the ongoing changes strengthen writing about science? How might these changes compromise or threaten writing about science? In a world where it’s possible for anyone to write about science, where does that leave professional science journalists? And who actually are these science journalists anyway?

Clock Quotes

When you consider something like death, after which (there being no news flash to the contrary) we may well go out like a candle flame, then it probably doesn’t matter if we try too hard, are awkward sometimes, care for one another too deeply, are excessively curious about nature, are too open to experience, enjoy a nonstop expense of the senses in an effort to know life intimately and lovingly.
– Diane Ackerman

Comments are backwards – Jeff Jarvis at #140conf (video)

In this talk, Jeff references his TEDx talk and a couple of his recent blog posts: The problem with comments isn’t them and News(paper) in the cloud:

The Self-Informing Public – Jay Rosen at #140conf (video)

ScienceOnline2010 – Rebooting Science Journalism in the Age of the Web (video) – Part 5

Rebooting Science Journalism in the Age of the Web – Ed Yong, Carl Zimmer, John Timmer, and David Dobbs
Saturday, January 16, 10:15 – 11:20am
Description: Our panel of journalist-blogger hybrids – Carl Zimmer, John Timmer, Ed Yimmer Yong, and David Dobbs- will discuss and debate the future of science journalism in the online world. Are blogs and mainstream media the bitter rivals that stereotypes would have us believe, or do the two sides have common threads and complementary strengths? How will the tools of the Internet change the art of reporting? How will the ongoing changes strengthen writing about science? How might these changes compromise or threaten writing about science? In a world where it’s possible for anyone to write about science, where does that leave professional science journalists? And who actually are these science journalists anyway?

Clock Quotes

You must prepare yourselves, young people, because Uncle Dave’s generation is getting old. We are almost ready to go to the retirement home to spend the rest of our days tapping our bedpans rhythmically in time to “easy listening” rock ‘n’ roll. We must pass the torch on to you, and you must grasp it, ideally by the end that is not on fire.
– Dave Barry

New and Exciting in PLoS ONE

There are 35 new articles in PLoS ONE today. As always, you should rate the articles, post notes and comments and send trackbacks when you blog about the papers. You can now also easily place articles on various social services (CiteULike, Mendeley, Connotea, Stumbleupon, Facebook and Digg) with just one click. Here are my own picks for the week – you go and look for your own favourites:
Do Pressures to Publish Increase Scientists’ Bias? An Empirical Support from US States Data:

The growing competition and “publish or perish” culture in academia might conflict with the objectivity and integrity of research, because it forces scientists to produce “publishable” results at all costs. Papers are less likely to be published and to be cited if they report “negative” results (results that fail to support the tested hypothesis). Therefore, if publication pressures increase scientific bias, the frequency of “positive” results in the literature should be higher in the more competitive and “productive” academic environments. This study verified this hypothesis by measuring the frequency of positive results in a large random sample of papers with a corresponding author based in the US. Across all disciplines, papers were more likely to support a tested hypothesis if their corresponding authors were working in states that, according to NSF data, produced more academic papers per capita. The size of this effect increased when controlling for state’s per capita R&D expenditure and for study characteristics that previous research showed to correlate with the frequency of positive results, including discipline and methodology. Although the confounding effect of institutions’ prestige could not be excluded (researchers in the more productive universities could be the most clever and successful in their experiments), these results support the hypothesis that competitive academic environments increase not only scientists’ productivity but also their bias. The same phenomenon might be observed in other countries where academic competition and pressures to publish are high.

Continue reading

ScienceOnline2010 – Rebooting Science Journalism in the Age of the Web (video) – Part 4

Rebooting Science Journalism in the Age of the Web – Ed Yong, Carl Zimmer, John Timmer, and David Dobbs
Saturday, January 16, 10:15 – 11:20am
Description: Our panel of journalist-blogger hybrids – Carl Zimmer, John Timmer, Ed Yimmer Yong, and David Dobbs- will discuss and debate the future of science journalism in the online world. Are blogs and mainstream media the bitter rivals that stereotypes would have us believe, or do the two sides have common threads and complementary strengths? How will the tools of the Internet change the art of reporting? How will the ongoing changes strengthen writing about science? How might these changes compromise or threaten writing about science? In a world where it’s possible for anyone to write about science, where does that leave professional science journalists? And who actually are these science journalists anyway?

New and Exciting in PLoS this week

Four out of seven PLoS journals published new articles last night – here are the ones that caught my eye. As always, you should rate the articles, post notes and comments and send trackbacks when you blog about the papers. You can now also easily place articles on various social services (CiteULike, Mendeley, Connotea, Stumbleupon, Facebook and Digg) with just one click. Here are my own picks for the week – you go and look for your own favourites:
Do Decapod Crustaceans Have Nociceptors for Extreme pH?:

Nociception is the physiological detection of noxious stimuli. Because of its obvious importance, nociception is expected to be widespread across animal taxa and to trigger robust behaviours reliably. Nociception in invertebrates, such as crustaceans, is poorly studied. Three decapod crustacean species were tested for nociceptive behaviour: Louisiana red swamp crayfish (Procambarus clarkii), white shrimp (Litopenaeus setiferus), and grass shrimp (Palaemonetes sp.). Applying sodium hydroxide, hydrochloric acid, or benzocaine to the antennae caused no change in behaviour in the three species compared to controls. Animals did not groom the stimulated antenna, and there was no difference in movement of treated individuals and controls. Extracellular recordings of antennal nerves in P. clarkii revealed continual spontaneous activity, but no neurons that were reliably excited by the application of concentrated sodium hydroxide or hydrochloric acid. Previously reported responses to extreme pH are either not consistently evoked across species or were mischaracterized as nociception. There was no behavioural or physiological evidence that the antennae contained specialized nociceptors that responded to pH.

Zen Faulkes has more background information about it.

Continue reading

Clock Quotes

As long as we are persistent in our pursuit of our deepest destiny, we will continue to grow. We cannot choose the day or time when we will fully bloom. It happens in its own time.
– Denis Waitley

A 2.5 Year-Old Has A First Encounter with An iPad (video)


[Hat-tip: “If you want to understand the future…don’t pay attention to how technology is changing, pay attention to how childhood is changing.”]

Environmentally friendly chico bags

We bought a couple of these recently and use them for all our grocery shopping. They are environmentally friendly, strong chico bags, tiny when wrapped up (and easy to wrap up) and large when opened up:
chico bag.jpg
Conflict of Interest: this is Bride of Coturnix’s store (look around for other items). Every item sold puts money in our joint account. Which is good for me as I am owing tons in taxes…..

ScienceOnline2010 – Rebooting Science Journalism in the Age of the Web (video) – Part 3

Rebooting Science Journalism in the Age of the Web – Ed Yong, Carl Zimmer, John Timmer, and David Dobbs
Saturday, January 16, 10:15 – 11:20am
Description: Our panel of journalist-blogger hybrids – Carl Zimmer, John Timmer, Ed Yimmer Yong, and David Dobbs- will discuss and debate the future of science journalism in the online world. Are blogs and mainstream media the bitter rivals that stereotypes would have us believe, or do the two sides have common threads and complementary strengths? How will the tools of the Internet change the art of reporting? How will the ongoing changes strengthen writing about science? How might these changes compromise or threaten writing about science? In a world where it’s possible for anyone to write about science, where does that leave professional science journalists? And who actually are these science journalists anyway?