My picks from ScienceDaily

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Clock Quotes

To divide one’s life by years is of course to tumble into a trap set by our own arithmetic. The calendar consents to carry on its dull wall-existence by the arbitrary timetables we have drawn up in consultation with those permanent commuters, Earth and Sun. But we, unlike trees, need grow no annual rings.
– Clifton Fadiman

Happy New Year

2008_12_26_nytired.jpg

New and Exciting in PLoS ONE

There are 12 new articles in PLoS ONE today. As always, you should rate the articles, post notes and comments and send trackbacks when you blog about the papers. You can now also easily place articles on various social services (CiteULike, Connotea, Stumbleupon, Facebook and Digg) with just one click. Here are my own picks for the week – you go and look for your own favourites:
Temporal and Individual Variation in Offspring Provisioning by Tree Swallows: A New Method of Automated Nest Attendance Monitoring:

Studies of the ecology and evolution of avian nesting behavior have been limited by the difficulty and expense of sampling nest attendance behavior across entire days or throughout a substantial portion of the nestling period. Direct observation of nesting birds using human observers and most automated devices requires sub-sampling of the nestling period, which does not allow for the quantification of the duration of chick-feeding by parents within a day, and may also inadequately capture temporal variation in the rate at which chicks are fed. Here I describe an inexpensive device, the Automated Perch Recorder (APR) system, which collects accurate, long-term data on hourly rates of nest visitation, the duration of a pair’s workday, and the total number of visits the pair makes to their nest across the entire period for which it is deployed. I also describe methods for verifying the accuracy of the system in the field, and several examples of how these data can be used to explore the causes of variation in and tradeoffs between the rate at which birds feed their chicks and the total length of time birds spend feeding chicks in a day.

Critical Evaluation of Branch Polarity and Apical Dominance as Dictators of Colony Astogeny in a Branching Coral:

The high morphological resemblance between branching corals and trees, can lead to comparative studies on pattern formation traits, best exemplified in plants and in some cnidarians. Here, 81 branches of similar size of the hermatypic coral Stylophora pistillata were lopped of three different genets, their skeletons marked with alizarin red-S, and divided haphazardly into three morphometric treatment groups: (I) upright position; (II) horizontal position, intact tip; and (III) horizontal position, cut tip. After 1 y of in-situ growth, the 45 surviving ramets were brought to the laboratory, their tissues removed and their architectures analyzed by 22 morphological parameters (MPs). We found that within 1 y, isolated branches developed into small coral colonies by growing new branches from all branch termini, in all directions. No architectural dissimilarity was assigned among the three studied genets of treatment I colonies. However, a major architectural disparity between treatment I colonies and colonies of treatments II and III was documented as the development of mirror structures from both sides of treatments II and III settings as compared to tip-borne architectures in treatment I colonies. We did not observe apical dominance since fragments grew equally from all branch sides without documented dominant polarity along branch axis. In treatment II colonies, no MP for new branches originating either from tips or from branch bases differed significantly. In treatment III colonies, growth from the cut tip areas was significantly lower compared to the base, again, suggesting lack of apical dominance in this species. Changes in branch polarity revealed genet associated plasticity, which in one of the studied genets, led to enhanced growth. Different genets exhibited canalization flexibility of growth patterns towards either lateral growth, or branch axis extension (skeletal weight and not porosity was measured). This study revealed that colony astogeny in S. pistillata is a regulated process expressed through programmed events and not directly related to simple energy trade-off principles or to environmental conditions, and that branch polarity and apical dominance do not dictate colony astogeny. Therefore, plasticity and astogenic disparities encompass a diversity of genetic (fixed and flexible) induced responses.

Effect of a Standardised Dietary Restriction Protocol on Multiple Laboratory Strains of Drosophila melanogaster:

Outcomes of lifespan studies in model organisms are particularly susceptible to variations in technical procedures. This is especially true of dietary restriction, which is implemented in many different ways among laboratories. In this study, we have examined the effect of laboratory stock maintenance, genotype differences and microbial infection on the ability of dietary restriction (DR) to extend life in the fruit fly Drosophila melanogaster. None of these factors block the DR effect. These data lend support to the idea that nutrient restriction genuinely extends lifespan in flies, and that any mechanistic discoveries made with this model are of potential relevance to the determinants of lifespan in other organisms.

ScienceOnline’09 – introducing the participants 5

scienceonline09.jpg
Let’s highlight some more of the participants of this year’s ScienceOnline09 conference:
Greg Laden is an anthropologist, a part time independent scholar and part time associate adviser with the Program for Individualized Learning at the the University of Minnesota and a prolific SciBling blogger. He will be on the panel
Hey, You Can’t Say That!
Benjamin Landis is a student in the Nicholas School of the Environment at Duke.
Patric Lane is the Health and Science Editor at UNC-Chapel Hill News Services.
Les Lang is the Director of Research Communications and Assistant Director of Public Affairs and Marketing in the Medical Center News Office at UNC.
Erica Lannan is a Signal Transduction researcher at the National Institute of Environemental Health Sciences (NIEHS).
Sol Lederman is the Consultant for US Dept of Energy Office of Scientific and Technical Information in Santa Fe (which he will show-and-tell) and a blogger.
Alex Lee is a production artist at a marketing company and blogs at Blinding Flash of the Obvious.
Danielle Lee is an animal behavior researcher at the University of Missouri – St. Louis and blogs on Urban Science Adventures. She will co-moderate the session on Race in science – online and offline.
Tom Levenson is a professor of science writing and head of the graduate science writing program at MIT and he blogs on The Inverse Square Blog. He will co-moderate two sessions: one on How to become a (paid) science journalist: advice for bloggers and the other one: You are a science blogger but you want to publish a pop-sci book?.
Thomas Linden is the Anchor of Journal Watch Audio, the Director of the UNC Science & Medical Journalism Program and a blogger.
Peter Lipson is a physician and a blogger on Denialism blog. He will lead the workshop Blogging101 – how to get started and co-moderate the session on Anonymity, Pseudonymity – building reputation online.
Troy Livingston is the Vice President for Innovation and Learning at the Museum of Life and Science in Durham, NC.
Corie Lok is the Overlord on Nature Network which she will show-and-tell.
Robert Luhn is the Communications Coordinator at the National Center for Science Education.
Kristian Lum is a student of Statistics at Duke.
Evelyn Lynge is the Co-President of the Jacksonville branch of the The American Association of University Women.

A Year in Cities, 2008

An ongoing meme [From, via] – list of cities/towns in which I have spent at least one night during 2008 (asterisk for places where I slept on non-consecutive nights):
New York City, NY*
Destin, FL
London, UK
Cambridge, UK*
Watford, UK
Cromer, UK
Trieste, Italy
Belgrade, Serbia
Berlin, Germany
A very Euro-focused year, compared with 2007 which was all over the USA, e.g., San Francisco (twice), New York City (twice), Boston, Milwaukee, Greensboro, Mountain View….

An awesome Geonemertes australiensis? (video)

See the discussion about identification of this strange animal here. Is it correct?

My picks from ScienceDaily

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Clock Quotes

Remembrance, like a candle, burns brightest at Christmas Time.
– Charles Dickens

Radical Transparency

This article is almost two years old, but it is perhaps even more current today than it was when it first appeared:

Pretend for a second that you’re a CEO. Would you reveal your deepest, darkest secrets online? Would you confess that you’re an indecisive weakling, that your colleagues are inept, that you’re not really sure if you can meet payroll? Sounds crazy, right? After all, Coke doesn’t tell Pepsi what’s in the formula. Nobody sane strips down naked in front of their peers. But that’s exactly what Glenn Kelman did. And he thinks it saved his business.
———-snip———–
The Internet has inverted the social physics of information. Companies used to assume that details about their internal workings were valuable precisely because they were secret. If you were cagey about your plans, you had the upper hand; if you kept your next big idea to yourself, people couldn’t steal it. Now, billion- dollar ideas come to CEOs who give them away; corporations that publicize their failings grow stronger. Power comes not from your Rolodex but from how many bloggers link to you – and everyone trembles before search engine rankings. Kelman rewired the system and thinks anyone else could, too. But are we really ready to do all our business in the buff?
“You can’t hide anything anymore,” Don Tapscott says. Coauthor of The Naked Corporation, a book about corporate transparency, and Wikinomics, Tapscott is explaining a core truth of the see-through age: If you engage in corporate flimflam, people will find out.
———-snip———–
Secrecy is dying. It’s probably already dead.2 In a world where Eli Lilly’s internal drug-development memos, Paris Hilton’s phonecam images, Enron’s emails, and even the governor of California’s private conversations can be instantly forwarded across the planet, trying to hide something illicit – trying to hide anything, really – is an unwise gamble. So many blogs rely on scoops to drive their traffic that muckraking has become a sort of mass global hobby. Radical transparency has even reached the ultrasecretive world of Washington politics…
———-snip———–
All of which explains why the cult of transparency has so many high tech converts these days. Transparency is a judo move. Your customers are going to poke around in your business anyway, and your workers are going to blab about internal info – so why not make it work for you by turning everyone into a partner in the process and inviting them to do so?
———-snip———–
Some of this isn’t even about business; it’s a cultural shift, a redrawing of the lines between what’s private and what’s public. A generation has grown up blogging, posting a daily phonecam picture on Flickr and listing its geographic position in real time on Dodgeball and Google Maps. For them, authenticity comes from online exposure. It’s hard to trust anyone who doesn’t list their dreams and fears on Facebook.
———-snip———–
The new breed of naked executives also discover that once people are interested in you, they’re interested in helping you out – by offering ideas, critiques, and extra brain cycles. Customers become working partners.3 Kelman used to spend valuable work time arguing why the real estate business had to change; now his customers do battle for him, wading into Redfin’s online forums to haggle with old-school agents.
———-snip———–
Nearly everyone I spoke to had a warning for would-be transparent CEOs: You can’t go halfway naked. It’s all or nothing. Executives who promise they’ll be open have to stay open. The minute they become evasive about troubling news, transparency’s implied social compact crumbles.
———-snip———–
Which illustrates an interesting aspect of the Inter net age: Google is not a search engine. Google is a reputation-management system. And that’s one of the most powerful reasons so many CEOs have become more transparent: Online, your rep is quantifiable, findable, and totally unavoidable. In other words, radical transparency is a double-edged sword, but once you know the new rules, you can use it to control your image in ways you never could before.
———-snip———–
“Online is where reputations are made now,” says Leslie Gaines Ross, chief reputation strategist – yes, that’s her actual title – with the PR firm Weber Shandwick. She regularly speaks to companies that realize a single Google search determines more about how they’re perceived than a multimillion-dollar ad campaign. “It used to be that you’d look only at your reputation in newspapers and broadcast media, positive and negative. But now the blogosphere is equally powerful, and it has different rules. Public relations used to be about having stuff taken down, and you can’t do that with the Internet.”
But here’s the interesting paradox: The reputation economy creates an incentive to be more open, not less. Since Internet commentary is inescapable, the only way to influence it is to be part of it. Being transparent, opening up, posting interesting material frequently and often is the only way to amass positive links to yourself and thus to directly influence your Googleable reputation. Putting out more evasion or PR puffery won’t work, because people will either ignore it and not link to it – or worse, pick the spin apart and enshrine those criticisms high on your Google list of life.

Read the whole thing – all those good examples that I snipped out. Is this how you operate, either as a person or as a company/organization?

Fighting against Light Pollution with Tourism

Every now and then I mention light pollution on this blog, usually from a biologist’s perspective. But here is another perspective – using “dark sky” as a tourist attraction – a place where one can actually see the stars:

Nonetheless, Galloway Forest Park contains the darkest skies in Europe, and Steve Owens, co-coordinator of the IYA plans in the UK, is determined to gain recognition from the International Dark-Sky Association (IDA) as a lasting legacy for the 2009 celebrations.
The certification process is challenging. According to the Guardian, “to earn dark sky park status, officials in Galloway will submit digital photographs of the night sky taken through a fisheye lens. Their application must be supported by readings from light meters at different points in the park, and a list of measures that are being taken within the forest to prevent lights in and around the handful of farm buildings from spilling upwards into the sky and ruining the view.”

Hopebuilding and Storytelling

On the Hopebuilding’s Weblog, Rosemary wrote:

When I was a journalist, many years ago now, it never really occurred to me that we spent much more time on “bad news” than on “good news”. In fact, sometimes people caricatured the “good news” attempts as being Pollyanna-ish; they thought “good” news was not really news.
But these days, as I spend so much time on the web, I really appreciate the “good news” sites. It provides a healthy balance to the daily diet of so much “bad news” in the media – what my friend Jim Lord calls “deficit thinking”, and what he replaces with “appreciative thinking”.

And from that idea, Hopebuilding Wiki was born – a collection of stories from around the world describing how people overcome adversity, or got together and solved a problem:

Hopebuilding wiki was created to share stories of achievement by ordinary people who are doing extraordinary things to make their world a better place to live in, but whose stories are not as widely known as they should be.
You will meet people here who saw a problem as an opportunity to create something new or something better, whether it be a school principal finding a way to use spare land to grow crops for a school lunch program, and thus inspiring dozens of neighbouring schools to do the same thing; a community of slumdwellers setting out to provide water and sewer service to their area, using their own resources and skills; people in large cities creating jobs for, and bringing gifts to, the homeless; or a huge company like Wal-Mart realizing that putting canned fish on the shelves meant doing its best to ensure that the fishing industry was sustainable.
You will meet people who built peace for themselves, even while the rest of their country was in chaos, and people who sustained their communities even in the middle of conflict. You will find people who dreamed of eliminating or reducing the death toll from terrible illnesses, suffering people who reached out to each other to provide comfort and support when others would not, and people who wanted to give others the tools to manage their own health effectively even when no professionals were available. You will find inventive people whose creativity is offering us new solutions to live sustainably on our shared earth.
Hopebuilding includes stories from both the “developing” and “developed” worlds, as they are often called, because I believe that people living in fragile states and in inner cities and aboriginal communities in North America and Europe have a great deal in common, both in terms of challenges and in inspiring ideas and solutions based on their own capacities and resources. Many people living in fragile states think of North America and Europe as being incredibly wealthy, not as places with homeless people and public schools without learning resources. Similarly, many people in North America and Europe have a picture of fragile states as being places where nothing works, because that is what they see on the news, rather than places where people have used their own knowledge and capacity to develop creative solutions to the challenges they face – solutions that may well help people in “developed” states as well. Realizing that we share the same challenges means we can be inspired by each other’s solutions, capacities, and ideas – and for me, that is the essence of a peer-sharing approach to international development.
For me, these stories show why local knowledge, and local capacity, is such a vital foundation for development at every level. New technologies have shown us that our world is an inter-connected place, and our problems are shared. It is not a world in which some people have all the problems, and other people have all the solutions; in fact, some of the most creative ideas are coming from places or groups that were once seen as ‘under-developed’. Sharing our creative solutions widely means local peoples’ expertise and achievements in one country can inspire local people facing a similar problem in another country.
While I live these days in a small village in a relatively remote part of the world, it inspires me daily to be able to find and share such stories of other peoples’ achievement through the Internet. The people in these stories give me hope, and I salute their achievements. I hope you will, as well.

Check out the stories there….

Now, THAT’S a science blog!

Introducing Sex, Drugs and Rockin’ Venom: Confessions of an Extreme Scientist by Dr. Bryan Grieg Fry, the venom biologist!

New and Exciting in PLoS ONE

There are 24 new articles in PLoS ONE today. As always, you should rate the articles, post notes and comments and send trackbacks when you blog about the papers. You can now also easily place articles on various social services (CiteULike, Connotea, Stumbleupon, Facebook and Digg) with just one click. Here are my own picks for the week – you go and look for your own favourites:
Evolutionary Patterns and Selective Pressures of Odorant/Pheromone Receptor Gene Families in Teleost Fishes:

Teleost fishes do not have a vomeronasal organ (VNO), and their vomeronasal receptors (V1Rs, V2Rs) are expressed in the main olfactory epithelium (MOE), as are odorant receptors (ORs) and trace amine-associated receptors (TAARs). In this study, to obtain insights into the functional distinction among the four chemosensory receptor families in teleost fishes, their evolutionary patterns were examined in zebrafish, medaka, stickleback, fugu, and spotted green pufferfish. Phylogenetic analysis revealed that many lineage-specific gene gains and losses occurred in the teleost fish TAARs, whereas only a few gene gains and losses have taken place in the teleost fish vomeronasal receptors. In addition, synonymous and nonsynonymous nucleotide substitution rate ratios (KA/KS) in TAARs tended to be higher than those in ORs and V2Rs. Frequent gene gains/losses and high KA/KS in teleost TAARs suggest that receptors in this family are used for detecting some species-specific chemicals such as pheromones. Conversely, conserved repertoires of V1R and V2R families in teleost fishes may imply that receptors in these families perceive common odorants for teleosts, such as amino acids. Teleost ORs showed intermediate evolutionary pattern between TAARs and vomeronasal receptors. Many teleost ORs seem to be used for common odorants, but some ORs may have evolved to recognize lineage-specific odors.

Insect Brains Use Image Interpolation Mechanisms to Recognise Rotated Objects:

Recognising complex three-dimensional objects presents significant challenges to visual systems when these objects are rotated in depth. The image processing requirements for reliable individual recognition under these circumstances are computationally intensive since local features and their spatial relationships may significantly change as an object is rotated in the horizontal plane. Visual experience is known to be important in primate brains learning to recognise rotated objects, but currently it is unknown how animals with comparatively simple brains deal with the problem of reliably recognising objects when seen from different viewpoints. We show that the miniature brain of honeybees initially demonstrate a low tolerance for novel views of complex shapes (e.g. human faces), but can learn to recognise novel views of stimuli by interpolating between or ‘averaging’ views they have experienced. The finding that visual experience is also important for bees has important implications for understanding how three dimensional biologically relevant objects like flowers are recognised in complex environments, and for how machine vision might be taught to solve related visual problems.

An Epididymis-Specific Secretory Protein HongrES1 Critically Regulates Sperm Capacitation and Male Fertility:

Mammalian sperm capacitation is an essential prerequisite to fertilizion. Although progress had been made in understanding the physiology and biochemistry of capacitation, little is known about the potential roles of epididymal proteins during this process. Here we report that HongrES1, a new member of the SERPIN (serine proteinase inhibitor) family exclusively expressed in the rat cauda epididymis and up-regulated by androgen, is secreted into the lumen and covers the sperm head. Co-culture of caudal sperms with HongrES1 antibody in vitro resulted in a significant increase in the percentage of capacitated spermatozoa. Furthermore, the percentage of capacitated spermatozoa clearly increased in rats when HongrES1 was down-regulated by RNAi in vivo. Remarkably, knockdown of HongrES1 in vivo led to reduced fertility accompanied with deformed appearance of fetuses and pups. These results identify HongrES1 as a novel and critical molecule in the regulation of sperm capacitation and male fertility.

On Gould and rates of evolution

Three Obligatory Readings of the Day:
Brian Switek: Stephen Jay Gould’s view of life
Larry Moran: An Adaptationist View of Stephen Jay Gould
Greg Laden: How fast does evolution happen?

Welcome the newest SciBling!

Go say Hello to Rebecca Skloot, the newest addition to the Scienceblogs.com family, and her blog Culture Dish.
Check out her About page and the first post.

Zbigniew Brzezinski to Scarborough: “Stunningly Superficial”


And what Joe says in response? He claims that he got his information from NYTimes and Washington Post, not realizing that those two publications are just as superficial as he is. Yes, Joe, throw those out and call Zbig if you want to get educated, not that he does not have his own agenda and his own perspective, but it’s a start, the first baby-steps from just not knowing anything yet saying it on TV with smug self-adoration….

ScienceOnline’09 – introducing the participants 4

scienceonline09.jpg
Let’s highlight some more of the participants of this year’s ScienceOnline09 conference:
Karen James is the Director of Science for The Beagle Project, writes the Beagle Project Blog and also works full time at the Natural History Museum in London doing original research in the Department of Botany. At the conference, Karen will be on two panels: Hey, You Can’t Say That! and Blogging adventure: how to post from strange locations.
Anne Jefferson is a hydrogeologist at UNC-Charlotte and blogs on Watershed Hydrogeology Blog.
Clinton Jenkins is an ecologist and researcher in the Pimm group at the Nicholas School of the Environment.
Sandra Jenkins is coming from Maysville, NC.
Erin Johnson is one of our Seed Overlords – she manages Scienceblogs.com and she will do a demo of it, as well as co-moderate the session Science blogging networks – what works, what does not?
Douglas Johnston is an instructor in the SPH Executive Masters Program at UNC.
Paul Jones is a professor of journalism at UNC, director of Ibiblio.com, a blogger, and a co-organizer of the first two Science Blogging Conferences.
Tatjana Jovanovic-Grove is a biologist and artist. She will co-moderate two sessions: Open Access in the networked world: experience of developing and transition countries and How to paint your own blog images.
Djordje Jeremic is the 9th grade homeschooled son of Tatjana Jovanovic-Grove.
Betul Kacar is a PhD student at Emory University and blogs on Counter Minds.
Molly Keener works in the Coy C. Carpenter Library at Wake Forest University School of Medicine and runs their news blog.
Tom Kibler (together with his wife Patricia), runs Campbell-Kibler Associates, Inc.
Sheril Kirshenbaum is a marine biologist, freelance writer, and a dear neighborly SciBling, blogging next door at The Intersection.
Peggy Kolm blogs on Biology in Science Fiction, The Road Less Traveled and Women in Science and will co-moderate the session on Science Fiction on Science Blogs?
Heidi Koschwanez is a student in the Center for Biomolecular and Tissue Engineering at Duke.
Carolyn Kotlas is the Academic Outreach Consultant at UNC-Chapel Hill Information Technology Services.
David Kroll is a Professor and Chair of Pharmaceutical Sciences at the BRITE Center at NC Central University, as well as one of the co-organizers of ScienceOnline’09.
Anna Kushnir recently got her PhD in virology at Harvard and is now an intern with the Nature Network, where she writes her blog Lab Life. She will co-moderate the session Science blogging networks – what works, what does not?

Greg Cahill (1958-2008)

It is with great sadness that I learned that Dr.Greg Cahill died a few days ago, at the Houston airport, waiting for his flight. I have met Greg at several meetings of the Society for Research on Biological Rhythms and while, those being fairly large meetings, we never had big one-on-one conversations, I remember him as a humble and friendly person, beloved by everyone.
He started his scientific career in Mike Menaker’s lab, studying the entrainment of the mammalian clock in the suprachiasmatic nucleus in vitro. Making preparations of SCN and optic tracts and doing electrophysiology on such preparations was not an easy technical feat back in 1986 or so when he started doing this. After getting a PhD with Menaker at the University of Oregon, Greg did some work on circadian clocks in the retina of the Xenopus frog with Dr. Joseph Besharse.
When he got his own lab at the University of Houston, he was one of the first two circadian researchers to start using the zebrafish. I remember the SRBR meeting when we all excitedly watched the two of them present their first data – both primarily focused on the methodological question: how to continuously monitor circadian rhythms in this animal.
The other researcher, Dr.Keith Barrett (MS with Terry Page on cockroaches, PhD with Herb Underwood on Japanese quail, postdoc with Joseph Takahashi on chicken pineal, then started on zebrafish, not doing science any more, I hear), designed a continuous-flow collection and melatonin assay of zebrafish larvae placed in a 96-well plate.
Greg Cahill used a different tactic – he also placed larvae in a 96-well plate, but instead, he trained a camera on them and came up with a computer program to translate the video of the movements into quantitative data of circadian locomotor activity.
Having this methodology as a starting point, Dr.Cahill then embarked on the study of zebrafish circadian rhythms, identifying genetic mutants and elucidating the molecular mechanisms underlying the rhythms. He later perfected an even better monitoring technique – constructing zebrafish with the luciferase gene which could be monitored in the dark during the early development of the circadian system in the fish larvae.
He will be sorely missed by his colleagues and the field.

Today’s carnivals

Edition #12 of Berry-Go-Round is up on Foothills Fancies
Grand Rounds 5.15: At the interface of evolution and medicine are up on Moneduloides
Carnival of the Green is up on Ruscombe Green
Carnival of the Elitist Bastards: Stardate 62453.9 is up on Submitted to a Candid World
Friday Ark #223 is up on Modulator

Grackles are Smart! (video)

My picks from ScienceDaily

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Clock Quotes

Mail your packages early so the post office can lose them in time for Christmas.
– Johnny Carson

Bloggers vs. Journalists Redux, part N

Some guy named Mulshine, who is apparently an ancient journalist (remember: generation is mindset, not age), penned one of those idiotic pieces for Wall Street Journal, willingly exposing his out-datedness and blindness to the world – read it yourself and chuckle: All I Wanted for Christmas Was a Newspaper:

This highlights the real flaw in the thinking of those who herald the era of citizen journalism. They assume newspapers are going out of business because we aren’t doing what we in fact do amazingly well, which is to quickly analyze and report on complex public issues. The real reason they’re under pressure is much more mundane. The Internet can carry ads more cheaply, particularly help-wanted and automotive ads.

Bwahahaha! Good old days, when we were the deciders of what you, the proles, deserved to know. And we did it right because we went to j-school!
Frank Wilson responds, by debunking, right out of the box, two of the claims that Mulshine made in his article (apparently out of his own ass):

I don’t think someone who uses the word prophesized in place of prophesied (perhaps he was thinking of proselytized) should be so quick to complain about pundint (which I, by the way, had never seen or heard of before now).
—————
Actually, the people in a given school district are likely to be very interested in and willing to sit through such meetings and read such reports very carefully, since they are interested parties, more interested, apparently, than a cub reporter trying to keep himself awake during the proceedings “by employing trance-inducing techniques.”

Also good stuff in the comments there:

My principal objection to Mr. Mulshine’s lamentation is that blogs have not killed newspapers. Newspapers have been committing slow suicide for years. The elimination of book coverage means that a large group of people – called readers – no longer find what they are looking for in newspapers.

…and…

There is indeed often nothing more boring than a public meeting, which is why bloggers can attend the public meeting, report interesting details, and fashion a long-form report that is far more compelling that the sad dessicated prose that often serves as newspaper journalism.
There was a recent Pew Reports statistic for this year: in 2008, for the first time, people turned to the Internet for news more than newspapers. Not only has it not occurred to some newspapers to hire bloggers to provide a fresher perspective for journalism, but they willfully make themselves obsolete by getting rid of articles after three weeks, not bothering to tag them with keywords or categories, not provide RSS feeds, and not permit comments. You will find all this on the blogosphere. In fact, I think it can be argued that blogs are doing a better job at tracking stories than newspapers at times because of these active technologies.

And Mark:

Sure, I’m biased as well, as is frankly anyone who picks up a pen to write (sadly a lost art) or taps out a missive on a keyboard; I spend a bit of time every day blogging about issues relevant to the world of residential real estate. While I don’t spend time on “junk blogs” (other than some pretty silly but nonetheless very entertaining fly fishing blogs) that perhaps Mr. Mulshine is referring to in his piece- on the contrary I’ve found that serious thinkers and authors writing blogs have had a lot more relevant information to share than Mr. Mulshine’s colleagues in the mainstream press, particularly in the mainstream newspaper press.

And Griff Wigley:

Paul Mulshine, opinion columnist for the Newark Star-Ledger, misses the point when he argues that citizens aren’t likely to voluntarily ‘cover,’ for example, city council meetings for their blogs in the same way that a reporter does for a newspaper.
Yes, it’s valuable to have Suzi Rook at the Northfield News, Dusty Budd at KYMN, and RepJ’s Bonnie Obremski sitting through public meetings and then reporting on them.
But it’s more valuable for their stories to be published in an eco-system of civic engagement where the media, public officials and citizens are all involved in the effort to inform so that better public outcomes can occur.

Official response from Herald de Paris:

The problem, however, is not that the Internet stole news from the broadsheets. First and foremost, dear Brutus (and here I am quoting another really good writer, of whom you have certainly heard), “The fault lies not in our stars, but in ourselves.” Sensationalized news, fictitious news, unconfirmed news .. Page Six – real newspapers did not go there. Ever. The death of the newspaper began the moment someone had the hair-brained idea to defy the public trust simply to increase circulation, because selling more papers meant higher advertising rates. Then, too, the newspaper has been dying a slow death for 30 or 40 years, and since this pre-dates the electronic format(s), this means CNN, and the proliferation of 24/7 cable news. The simple truth is, they could get the news to market faster and fresher than the broadsheets ever could. The problem, however, is that broadcast news doesn’t know what to do with itself on slow news days. This gave rise to ‘Breaking News’ stories about such vitally important items as what time Anna Nicole Smith’s baby had a bottle, and how much hair Brittney Spears shaved off. Blame OJ Simpson a little, too, for that riveting low-speed car chase on the LA freeway – complete with turn signals. The fatal blow, it would seem, might have been that newspaper executives took a cue from their school-aged grandchildren, and began to, “blog.” The B-word. *shudder*
The truth is, the electronic media is a wonderful tool for news, but only if you know what you are doing. At the Herald de Paris, we have what we call a virtual newsroom. Our writers and reporters provide us the latest news, sometimes written on a PDA or a mobile phone, and complete with photographs. We have a way to go in providing local media coverage, but we will get there. Since the print media printed yesterday’s news the night before yesterday, they can not touch the timeliness of the electronic media. But it does not stop at the Internet. The real brilliance of electronic media is in mobile technology – when the latest news, information, and features are all in your pocket – available for your reading at your will. To date, however the converse detriment to this new age is that there are economic barriers to electronic media that have yet to be overcome. As it stands, access to information is, and remains, a commodity. At the Herald de Paris, we think this is wrong, and so we are working on ways to overcome this. We don’t know if this is your so-called new model or not, but if you wish to call us geniuses, we’ll take it. You see, the newspaper industry at-large has been trying to mold the electronic information age in its image, when instead, they should have been learning how the technology could/can make what they do better. Geniuses or not, that’s what we are doing .. and so far, it is working brilliantly.

Internet Guru:

Acting as if NO Internet news is trustworthy or professional is just as illogical as assuming that all print media work is the most perfect model. The truth of the matter is a large part of the product that the Old Media is trying to sell us is junk. Most journalists fail at their job. There are a few, of course, that are great. But, this is an illustration of humanity itself, isn’t it? Some will be good, the rest will fail. It’s Jefferson’s “aristocracy among men” defined.
The Internet is already producing its stars just as print media has, and it will continue to evolve, getting better with each succeeding day. Additionally, there’s no reason to expect that professional journalists will forever go away. There is also no reason to blindly believe in some fantastic future of every citizen becoming his own journalist. Somehow a new business model will find its way to the net and professional journalism will continue unabated.

Susan Duclos:

Well here is the deal as I see it… Reynolds is right, if enough independent, lowly bloggers, with a good vocabulary, were strewn our across America and willing to attend local meetings and go through documents which now are usually all published online, then yes, old media can and will be replaced.
Sure, many times, we bloggers find the news, paste important paragraphs and give our opinions which if we were real “journalists” writers would calling “analysis” instead of opinion, and bring the news to people who come to our sites.
Other times bloggers have been known to get their hands on PDF documents, produce them, go through them and show the blog reading public the portions of the reports that the major media “journalists” deliberately do not mention in their all important “analysis”.
The reason I started blogging was simple and addresses this whole debate in my mind.
Bloggers do give their opinions or analysis of any given situation, agreed, but bloggers do something that the professional journalists do not….we provide links to the original sources to which we use to determine our opinions and analysis.
We give our readers a chance to read the original reports, data, PDF’s, court papers, whatever the case may be, then those readers can decide for themselves if they agree with our “analysis” or if they come to a different conclusion.
We don’t hide relevant facts to make the pieces match our preconceived ideas….we provide sources, we link.
Before I started blogging, I heard the news, read some online news articles, but found what I was getting was the writers opinion and when I looked for the original source to be able to form my own opinion, you know where I found the links to the original sources?
Bloggers. Blogs. Before I even knew exactly what a blog was.
So, to Mr. Mulshine, a quick note….. if journalists want to stay relevant, they need to stop thinking their opinion is the only opinion, they need to start providing links to the original sources and stop expecting people to take their word as the word of God.
Otherwise, those army of Davids, are definitely going to start reporting original pieces and they will be trusted more because they will provide something the old media, the mainstream media, refuse to….. the facts to go along with a “journalist’s” opinion.

Cranford Pundit:

A lot of newspapers are taking steps to make themselves even less relevant. Like the food section that canned it’s editor and now cuts and pastes recipes from cooking.com (my sister’s paper does that), or the editorial page that cuts and pastes items from the DailyKos (my brother’s area newspaper is guilty of that). If they are supplying even more content that we can get for free who will their customers be besides the elderly and computerphobic?

William Beutler:

All right, well this question about usage of “pundit” vs. “pundint” is easily testable. Let’s go to Google BlogSearch:
* For a search on the single word pundit we find 705,874 results. Sorted for relevance, here are the top three results as of Sunday afternooon:
1. Daily Kos: Your Abbreviated Pundit Round-up
2. Gateway Pundit: Israeli Gaza Strikes Called ‘Holocaust’ By Hamas …
3. Daily Pundit » Sweets for the Sour
Already we can see that Mulshine should have chosen a different word to illustrate the alleged ignorance of Internet political commentators. Thanks to those like Instapundit, the word has enjoyed a strong currency in recent years, perhaps more so than any word besides “meme”.
* For a search on pundint we find 1,320 results with the top three by relevance as follows:
1. Campaign Retrospective: Goofiest “Pun-dint” Remarks
2. Dec 18, Pundint or Pundit : Common Errors in English
3. MacBigot Cached Glances » Blog Archive » It’s PUNDIT, not PUNDINT …
Remember, these are not necessarily the savviest bloggers (let alone, strictly, bloggers), just those which (the increasingly unreliable) BlogSearch coughed up first.

Pwned!
evolution-nextstep:

People like Mr Mulshine — which I suspect are numerous among the 50-and-up age bracket of the profession — don’t really like5 that the stupid, misspelling people he’s forced to sell his product to have the right to spout their opinion as to its quality. Unless you’re a really tony club, you don’t get to choose your customers.
Your goal for the Internet is the same as it was in print — produce content that’s either superior to or different than anyone else. You can now do so at a much faster rate — and if you were to take control of your product as I’ve suggested above, you could indeed do it better than anyone else. Make sure that you are not in the opinion, the “framing”, or the “shaping of opinion” business, for you now have tons of competition on the Internet and you’ll get6 creamed. If you, as an individual journalist, want to be in those businesses, fine. Separate yourself from journalism. I suggest above that journalism should separate itself from you.7 It is much harder to make the current model work on the Internet than I think it would be for the model I have described. A few companies are trying it; but I think someday soon the novelty will wear off if it hasn’t already.
A journalistic outfit that can produce the kind of content that I’ve described in this post — the hard news — reliably, according to a documented standard, by tightly-knit, trained, and (perhaps) certified professionals, and deliver that content and reliability on the Internet can cream the Internet competition. In addition, I think it can turn a profit for itself and its employees. There is little doubt in my mind of that. I’m not a sentimental person, though; I won’t cry at all if the current journalism industry’s business model collapses as seems likely. They will learn someday.

JD Johannes:

The subject of the quote from Glenn’s book, Army of Davids , was about how someone who actually understood the law and legislative process would make a better State House reporter than a recent college graduate with a journalism degree. In other words, an expert in law and legislation should be covering the State House. I even explained to Glenn how the business model would work–old fashioned syndication.
———————
The hear-say quote, and this particular usage by Mr. Mulshine, is one of the reasons why blogs have succeeded–the core news consumer does not like hear-say quotes and does not want bland executive summaries for the “casual reader.” The core news consumer wants hard news without bias, and expert opinion. Mr. Mulshine’s use of a misleading hear-say quote explains well the demise of his beloved newspaper.

Fausta Wertz defends the article, but when creamed in the comments pretends that her praise is actually criticism, just in polite language. Yeah, right. Her article begins with:

My friend and fellow NJ Voices blogger Paul Mulshine has an excellent article at the Wall Street Journal…

Karen De Coster:

So many articles like this, so little time. Yes, here’s another one of these articles from the parade of old men who can’t understand why young people (and a lot of older folks) don’t want to read their irrelevant rags any longer. “Real journalist” Paul Mulshine bemoans the loss of the censured, state-fed, boorish organs called newspapers. Another horse breeder making a plea against the automobile. His rant in the Wall Street Journal is bitter, and he seems especially jealous of the success of Instapundit (Glenn Reynolds). The days of censured news organs are disappearing, so get over it, Mulshine.
Mulshine points to the fact that only the print newspapers can produce “real journalists.” This kind of vindictive arrogance only gets these dinosaurs the opposite of what they want. They hate their customers for evolving with the times and desiring a different product. So guess what? Their (former) customers are telling them to stick it. What he really means by “real” journalist is one who is employed by an approved voice in the mainstream media. Note his reference to “alternative” media – the quotation marks convey his contempt for people who haven’t had to spend 40 years moving their way up from floor sweeper and runner to “real” journalist because the glory of the digital age creates open access and possibilities for all, and at little or no monetary cost.
Mulshine doesn’t believe that people who get their news on the Internet can appropriately distinguish between good and bad journalism. Apparently, there exists a distinct definition of real journalism that is escaping me. He wants us to trust that which comes from the printed press, because surely, that must be “real.” A newspaper is a source you can trust.

Planet Moron:

The problem runs deeper than that, but it is not that all newspapers are terrible or that all bloggers are better. It’s that most newspapers are, by definition, average, as are most professional newspaper reporters and is why so many alleged news reports read like warmed-over press releases or why so much commentary is little more than half-informed political proselytizing. When we covered the TARP debate, we at least actually read the original 130-page document, the first 70 pages of which we were even sober. Judging by the professional news coverage that put us in a distinct minority (at least on the reading part).
The problem for newspapers is that people simply have more choices. There are excellent news reporters out there, but there are also excellent bloggers. Not here, but other places. And if you want to hold and attract readers, you’ll have to do more than talking about how you do “amazingly well,” and start actually doing amazingly well. It’s hard work, but if bloggers are willing to do it for a few Google AdSense pennies, professional newspaper reporters shouldn’t mind doing it for their day job.

BGrey:

I would suggest that rather than spending their time arguing the merits of their craft, “professional journalists” should embrace the digital migration that is well under way. And how might they do this? They should publish as much of their “high quality” journalism as they can through as many digital distribution outlets as they can so they get their fair share of those online car and job ads!

Now, the funniest part of all – Paul Mulshine responds! Oh my, oh my! Check out how nice and welcoming he is to his readers! How many comments he added a note to, calling the commenter a “moron”?

I’ve received so many comments from people who failed to read the Moron Perspective Warning that I am now starting this entry with it. Please read it and follow the simple instructions.

Ha? Giving instructions to commenters as to what to say? Who’s moronic now?
Robert Ivan has a great response:

To answer Mr. Mulshine’s question; What is the New Model for generating revenue? The answer for general interest newspapers and news sites is that there is none. NONE. That’s no mystery.
I heard Jay Rosen once say; “What would have been the correct business model for Tower Records when the Internet arrived? The correct answer would have been NONE”.

Correct. A hundred-and-change years ago you got paid to drive a pair of horses and a cart around. Now you pay if you want to do it – big money as this sport is expensive. Yes, there will be aficionados who will print their own personal newspapers just for fun, as a hobby. And there are still people who collect and know how to use slide-rules.
Newspapers will die. News-gathering and news-reporting will not. But it will not be done by people with J-school degrees. It will be done by people with expertise in the topic they report on, with fire in the belly to go out and do it, by people who perceive a need as they see a vacuum, a lack of coverage. That’s what motivates bloggers as well.
But Robert Ivan is onto something else, as well:

Will his insular remarks further hasten the decline of the newspaper industry? For the people that have not already been convinced, I feel they might. Journalism and Communications students are encouraged to create and explore blogs as viable forms of communication and reporting. They are encouraged to explore any new form of communication and business model. Mulshine craps on this exploration. Now what? we’re all wrong? None of us can spell pundit? What? Mulshine’s article does not insult an entire generation and a community 125 million strong, it reaffirms their notion that newspaper are clueless and irrelevant. What the heck was he thinking?

Yes, every time one of the journalistic dinosaurs (sorry, I love dinosaurs, but that word has become a synonym for large, lumbering lizards who are too dumb and too slow to adapt to avoid extinction) writes one of these articles about “dirty, ignorant bloggers”, that article is itself a stark example of exactly what is wrong with journalism and why people are dropping their newspaper subscriptions in droves. It is an unsupported, blithering lie which most of the audience knows is a lie. Way to go to lose the last crumbles of authority….
Yes, it is important to make a distinction between beat reporters (I always think they got that name because the editor beat them into going out into the rain to report), op-ed writers (aka pundits aka bloviators) and expert journalists (people who work on a single story for a long, long time, doing in-depth research and usually having their own expertise in the topic).
The thing is – bloggers can and do all three. Many bloggers are better thinkers and better writers than David Brooks, so David Brooks will need to get smarter and better if he’s to survive. Many bloggers are also bad, but most professional journalists are just as bad PLUS they have bad editors to answer to.
Many bloggers have expertise in the topic they write about. Look at my SciBlings – when one of them blogs about a science topic, that is written by a scientist who actually knows what he/she is writing about, unlike some poor journo who was told by the editor to do it and do it fast. Sure, some people mouth off idiocies about topics they know nothing about, but those bloggers will never be respected as voices of authority on that topic anyway. Getting a salary from a media organization does not guarantee that the journalist is any less idiotic and any more respected by the readers.
And yes, bloggers are doing beat reporting. I’ve been watching the hyperlocal blogging here in Orange County, Carrboro, Chapel Hill, Durham, etc. for several years now and there are lots of bloggers who go to town hall meetings and report, in great detail and with great expertise, about those meetings or other local events. Mulshine just never bothered to familiarize himself with the topic he was supposed to write about…
And then, there are accidental reporters. All of the people who write and read blogs, are on twitter, facebook or friendfeed, mostly posting techie or pop-culture stuff, or about food or knitting, nonetheless are getting a training in new journalism, however subconsciously – taking in, by osmosis, the ethics, the forms and the etiquette of online journalism. And when the opportunity arises, they know how to rise to the challenge. Examples?
All the folks who just happened to be in Mumbai at the moment of the attack? They are not journalists and do not think of themselves as journalists. Most probably do not want to be journalists. Yet, at that moment, they were witnessing something important, they got on Twitter and did the journalistic job marvelously. It is through them that we learned, faster and better than from MSM, what happened there. They were journalists for a week. They are probably back to “what I had for breakfast” tweets, and that’s fine. A lot of citizen journalism will not and need not be full-time.
Remember the Denver airport accident last week? Well, a guy twittered from that airplane. The world learned from him that it happened, some 18 minutes before any news organization did. Then, after just having survived his second airplane crash, his couple of tweets were mostly about his need for a strong drink and who could blame him. But then, once he recharged his batteries, had a stiff drink, and perhaps a short nap, he went back on twitter and gave a series of reports that no professional journalist could match, because he was actually there, and he has no editor to dictate what is and what isn’t appropriate.
Remember when the bridge fell down in Minnesota about a year or so ago? Where did we get the first news? From a blogger who lives in the first house next to the bridge. Is he a journalist? No, but for a couple of weeks he was – he went down and helped with recovery, interviewed people, took pictures, and posted all of that on his blog. And none of the professional journalists – print, photo, radio, TV – that showed up on the scene later could match him. Not just because he was the first. But also because he knew the geography better than they did. He got people to tell him stories they would never trust a journalist with, because he was a neighbor. His blog was a place to go for a week or two, because no journalist on the scene could come close to the quality of his reporting. Did he earn any money on this? Probably not (though some readers probably hit his PayPal button at the time). And then he went back to his normal life and his normal blogging topics.
Being online all the time, consuming and producing content, is sufficient training for quality journalism. We all constantly train each other, by providing examples, and by criticizing each other all the time. Add to this the expertise in the topic that a generalist journalist will not have, and read why Jay Rosen wrote that If Bloggers Had No Ethics Blogging Would Have Failed, But it Didn’t. So Let’s Get a Clue, and you will realize that graduation from J-school is not needed for quality journalism, and may even be a hindrance as the students there learn the ropes of doing the False Equivalence, Fair&Balanced, He-Said-She-Said journalism (which they brazenly defend in public – no shame!) which sucks and that’s why the readers are leaving the professional media and instead are trusting bloggers who have proven themselves with their honesty and expertise.
Who will provide the news? Some journalists will become bloggers. Some bloggers will become journalists – some full-time, others when the opportunity arises. All will be equal and will be judged by the quality of their work, not by degrees they got or companies they work for. Some old-style journalists will swim, some will sink when finally and suddenly encountering such stiff competition, and forced to abandon their schooling in order to do journalism right, for the first time in their lives. With or without them, the news will get reported anyway.
Update: Blogging Advice for the Frustrated Journalist :

I took a Mass Communications class at Moorhead State University in 1982. The professor, Marv Bossart, was a television anchor. One day he was discussing the future of journalism, and talked about how one day people would be reading the newspapers through their computers. This was back when graphics were rudimentary and computer terminals produced green screen with green text characters only. I couldn’t imagine how this would be appealing, but I was excited at the prospect. Long before Compuserve, AOL and Prodigy, Marv Bossart had seen a future in which instant publishing would be ubiquitous. Now, it seems as though print newspapers are going the way of blacksmiths.

Correct – do not conflate news with newspapers. Newspapers are news on paper. That model is dying. There are better ways to get news now that do not cost as much as paper, ink, presses, trucks and delivery men.
Update – a couple of interesting responses:
Tom Levenson:

All of this is prelude to the argument I want to take some time to craft, which is to push back- not all the way, but partly — on the notion that the blogosphere in and of itself is sufficient to take on the role traditional journalism has (at least in myth) played in the past. The reason why efforts like those undertaken in Minnesota and across the way from my office matter is that in a finite day the ubiquitous and self-correcting nature of what might be called the informal journalism of the internet exists synoptically — but people don’t. They — I, we — have finite time to perform the editorial work of chasing down contending versions of reality until some resolution sets in. We have only so much time to put together the range of stories we might find interesting or important in each day.
Someone will take care of all that, whether it be some part of the civic journalism movement, or mutating mass media. If we don’t create and use the tools that make the totality of our efforts accessible, then it seems to me likely that people like Rupert Murdoch et al. — who aren’t dumb, not matter what other qualities may attach themselves to them — will create the filters, packaging, production values and aggregation work that will capture much more of a share of audience than they should.

Dan Conover:

Most newspapers AVOID serious “watchdogging” on a regular basis and limit themselves to re-writing, publicizing, and (in the best cases) critically examining the substantive work of volunteer or non-profit watchdog groups.
Why do these groups give their work to newspapers and TV stations? Until recently, it was because those were the communications channels available to them. Why do they do it now? 1. Because those channels are still the biggest, and 2. Habit.
What percentage of your local news media bandwidth is actually devoted to ORIGINAL watchdogging by local journalists? I don’t have figures, but after 20 years in the business I’m here to report that the percentage is tiny. Watchdogging is expensive, it angers people with power and influence, it pisses off huge swaths of the audience you’re trying to serve, and effective watchdogging requires sustained study and careful analysis.
So even when a newspaper takes a couple of reporters and applies them to an “investigative” piece for months, their finished product typically relies on data sets that were developed over years by non-journalists watchdogging one particular institution, agency or industry. In most cases these studies were paid for not by “business models,” but by donors.
Which brings us to a fairly obvious conclusion:
Now that the real watchdogs have access to worldwide networked media and can go directly to the audience, why should they even bother going through the traditional news media filters?

Jon Swift’s Annual Compilation of the Best Blog Posts of 2008 (Chosen by the Bloggers Themselves)

This may take days to read, but it is worth it….

New and Exciting in PLoS ONE

There are 21 new articles in PLoS ONE today. As always, you should rate the articles, post notes and comments and send trackbacks when you blog about the papers. You can now also easily place articles on various social services (CiteULike, Connotea, Stumbleupon, Facebook and Digg) with just one click. Here are my own picks for the week – you go and look for your own favourites:
Rapid Acoustic Survey for Biodiversity Appraisal:

Biodiversity assessment remains one of the most difficult challenges encountered by ecologists and conservation biologists. This task is becoming even more urgent with the current increase of habitat loss. Many methods-from rapid biodiversity assessments (RBA) to all-taxa biodiversity inventories (ATBI)-have been developed for decades to estimate local species richness. However, these methods are costly and invasive. Several animals-birds, mammals, amphibians, fishes and arthropods-produce sounds when moving, communicating or sensing their environment. Here we propose a new concept and method to describe biodiversity. We suggest to forego species or morphospecies identification used by ATBI and RBA respectively but rather to tackle the problem at another evolutionary unit, the community level. We also propose that a part of diversity can be estimated and compared through a rapid acoustic analysis of the sound produced by animal communities. We produced α and β diversity indexes that we first tested with 540 simulated acoustic communities. The α index, which measures acoustic entropy, shows a logarithmic correlation with the number of species within the acoustic community. The β index, which estimates both temporal and spectral dissimilarities, is linearly linked to the number of unshared species between acoustic communities. We then applied both indexes to two closely spaced Tanzanian dry lowland coastal forests. Indexes reveal for this small sample a lower acoustic diversity for the most disturbed forest and acoustic dissimilarities between the two forests suggest that degradation could have significantly decreased and modified community composition. Our results demonstrate for the first time that an indicator of biological diversity can be reliably obtained in a non-invasive way and with a limited sampling effort. This new approach may facilitate the appraisal of animal diversity at large spatial and temporal scales.

A Survey of Honey Bee Colony Losses in the U.S., Fall 2007 to Spring 2008:

Honey bees are an essential component of modern agriculture. A recently recognized ailment, Colony Collapse Disorder (CCD), devastates colonies, leaving hives with a complete lack of bees, dead or alive. Up to now, estimates of honey bee population decline have not included losses occurring during the wintering period, thus underestimating actual colony mortality. Our survey quantifies the extent of colony losses in the United States over the winter of 2007-2008. Surveys were conducted to quantify and identify management factors (e.g. operation size, hive migration) that contribute to high colony losses in general and CCD symptoms in particular. Over 19% of the country’s estimated 2.44 million colonies were surveyed. A total loss of 35.8% of colonies was recorded; an increase of 11.4% compared to last year. Operations that pollinated almonds lost, on average, the same number of colonies as those that did not. The 37.9% of operations that reported having at least some of their colonies die with a complete lack of bees had a total loss of 40.8% of colonies compared to the 17.1% loss reported by beekeepers without this symptom. Large operations were more likely to have this symptom suggesting that a contagious condition may be a causal factor. Sixty percent of all colonies that were reported dead in this survey died without dead bees, and thus possibly suffered from CCD. In PA, losses varied with region, indicating that ambient temperature over winter may be an important factor. Of utmost importance to understanding the recent losses and CCD is keeping track of losses over time and on a large geographic scale. Given that our surveys are representative of the losses across all beekeeping operations, between 0.75 and 1.00 million honey bee colonies are estimated to have died in the United States over the winter of 2007-2008. This article is an extensive survey of U.S. beekeepers across the continent, serving as a reference for comparison with future losses as well as providing guidance to future hypothesis-driven research on the causes of colony mortality.

Testing the Goodness of Supplementary Feeding to Enhance Population Viability in an Endangered Vulture:

Human-predator conflicts are directly or indirectly threatening many species with extinction. Thus, biologists are urged to find simple solutions to complex situations while avoiding unforeseen conservation outcomes. The provision of supplementary food at artificial feeding sites (AFS) is frequently used in the conservation of scavenger bird populations currently suffering from indirect poisoning, although no scientific studies on its effectiveness have been conducted. We used a long-term data set of 95 individually marked birds from the largest European core of the endangered bearded vulture (Gypaetus barbatus) to test the long-term effects of specific AFS for bearded vultures on their survival rates (by CMR models) and population dynamics (by Monte Carlo simulations) in an area where fatalities derived from illegal poisoning and the use of other toxics like veterinary drugs have increased over the last several years. Our data support the positive relationship between the use of AFS and survival. However, contrary to theoretical predictions (e.g. high and more stable adult survival among long-lived species), the use of AFS increased only survival of pre-adults. Moreover, AFS buffered the effects of illegal poisoning on this age-class, while adult survival decreased over years. Our simulations predicted a maximum value of extinction probability over a time horizon of 50 years. Population projections run with survival rates expected in scenarios without poisoning predicted the situation of least conservation concern, while including only AFS can maintain a large floater surplus that may delay population decline but fails to reduce poisoning risk among adults. Although AFS are not effective to save bearded vultures from an expected population decline, they delay population extinction and can be a useful tool for prolonging population viability while combating illegal and indirect poisoning. The eradication of different sources of poisoning is of top priority to ensure the long-term viability of this and many other species.

Low Density Lipoproteins as Circulating Fast Temperature Sensors:

The potential physiological significance of the nanophase transition of neutral lipids in the core of low density lipoprotein (LDL) particles is dependent on whether the rate is fast enough to integrate small (±2°C) temperature changes in the blood circulation. Using sub-second, time-resolved small-angle X-ray scattering technology with synchrotron radiation, we have monitored the dynamics of structural changes within LDL, which were triggered by temperature-jumps and -drops, respectively. Our findings reveal that the melting transition is complete within less than 10 milliseconds. The freezing transition proceeds slowly with a half-time of approximately two seconds. Thus, the time period over which LDL particles reside in cooler regions of the body readily facilitates structural reorientation of the apolar core lipids. Low density lipoproteins, the biological nanoparticles responsible for the transport of cholesterol in blood, are shown to act as intrinsic nano-thermometers, which can follow the periodic temperature changes during blood circulation. Our results demonstrate that the lipid core in LDL changes from a liquid crystalline to an oily state within fractions of seconds. This may, through the coupling to the protein structure of LDL, have important repercussions on current theories of the role of LDL in the pathogenesis of atherosclerosis.

Genetic Variation Stimulated by Epigenetic Modification:

Homologous recombination is essential for maintaining genomic integrity. A common repair mechanism, it uses a homologous or homeologous donor as a template for repair of a damaged target gene. Such repair must be regulated, both to identify appropriate donors for repair, and to avoid excess or inappropriate recombination. We show that modifications of donor chromatin structure can promote homology-directed repair. These experiments demonstrate that either the activator VP16 or the histone chaperone, HIRA, accelerated gene conversion approximately 10-fold when tethered within the donor array for Ig gene conversion in the chicken B cell line DT40. VP16 greatly increased levels of acetylated histones H3 and H4, while tethered HIRA did not affect histone acetylation, but caused an increase in local nucleosome density and levels of histone H3.3. Thus, epigenetic modification can stimulate genetic variation. The evidence that distinct activating modifications can promote similar functional outcomes suggests that a variety of chromatin changes may regulate homologous recombination, and that disregulation of epigenetic marks may have deleterious genetic consequences.

Bird of Paradise Mating Behavior (video)

ScienceOnline’09 – introducing the participants 3

scienceonline09.jpg
Let’s highlight some more of the participants of this year’s ScienceOnline09 conference:
Kevin Emamy is coming to do a demo of his CiteULike reference management platform.
Kay Endriss teaches statistics in Career Center High School in Winston-Salem (see the Wikipedia page).
Martin Fenner is the Clinical Fellow in Oncology at Hannover Medical School in Germany. He blogs on Gobbledygook and will lead a session on Providing public health and medical information to all.
Matt Ford is a writer for Nobel Intent and will co-moderate a session Science blogging without the blog?
Suzanne Franks is my SciBling – Zuska. She will co-moderate a session on Gender in science — online and offline
Kim Gainer teaches English at Radford College and writes fantasy fiction.
Patty Gainer is Kim’s daughter and, like her Mom, this will be her third time at the conference. Since last year, she has graduated from Radford High School and is now a student at New River Community College.
Kevin Gamble is the Chief Technology Officer for the American Distance Education Consortium. He is also the Project Director for the National Science Foundation Advanced Internet Satellite Extension Project (AISEP) and Associate Director of the National eXtension Initiative at NCSU. And he blogs on High Touch.
Henry Gee is the senior editor at Nature and blogs on The End Of The Pier Show. He will co-moderate the session on Alternative careers: how to become a journal editor.
gg blogs on Skulls in the Stars and runs The Giant’s Shoulders carnival. He will co-moderate the session Web and the History of Science.
Johnathan Gitlin is a writer for Ars Technica and will co-moderate a session Science blogging without the blog?
Rob Gluck blogs on Mindshavings.
Miriam Goldstein is a doctoral student at the Scripps Institution of Oceanography and writes The Oyster’s Garter.
Mary Jane Gore is the Senior Science Writer at The Duke Medicine Office of News and Communications.
Xan Gregg works at SAS Institute and blogs on FORTH GO.
Grrrlscientist is my SciBling, over on Living the Scientific Life. She will co-moderate the session on Nature blogging.
Salman Hameed is an astronomer and Assistant Professor of Integrated Science & Humanities at Hampshire College, Massachusetts. He blogs on Science and Religion News.
Steven Hamelly is a Quality Assurance/Regulatory Affairs Expert in Chapel Hill (until recently at BearingPoint).
Roger Harris is Online Social Media Manager at Capstrat and blogs on TwitterThoughts. He will lead a workshop Blogging102 – how to make your blog better and do a show-and-tell on how to put your story on a dozen networks, sites and services in 15 minutes or less.
Brian Hawkins is a Blood-Brain Barrier researcher at the National Institute of Environemental Health Sciences (NIEHS). See his webpage and blog.
Katherine Haxton is a Lecturer in Chemistry at Keele University in the UK and she blogs on Endless Possibilities v2.0.
Jay Heinz is a Multimedia Designer at the Morehead Planetarium and Science Center and writes on their blog.
Victor Henning will do a demo of his Mendeley reference manager platform.
Brad Herring is a nanotechnology afficionado at The Museum of Life and Science in Durham.
Anne-Marie Hodge is an undergraduate student working towards a dual Zoology/Conservation Biology degree (minoring in Ecology and Anthropology) at Auburn University and she blogs on Pondering Pikaia. She will be participating on the panel Blogging adventure: how to post from strange locations.
Elissa Hoffman teaches biology in Appleton East High School, WI, where she runs hes classroom blog Endless Forms Most Beautiful.
John Hogenesch is an Associate Professor of Pharmacology and the Associate Director of the Penn Genome Frontiers Institute at University of Pennsylvania. He is of my “tribe” – a circadian researcher, and an aficionado of projects like Gene Wiki, WikiProteins, WikiPathways, and WikiGenes and BioGPS. He will co-moderate a session Community intelligence applied to gene annotation.
Stephanie Holmgren is the Biomedical Science Librarian at the National Institute of Environmental Health Sciences.
Ernie Hood is a freelance science writer and he does a weekly science radio show – Radio In Vivo – at the local radio station WCOM-FM.
Bill Hooker is also coming for the third time – he blogs on Open Reading Frame and will co-moderate a session on Open Access publishing: present and future.
Carlos Hotta teaches at Universidade de Sao Paulo in Brazil and blogs on Brontossauros em meu jardim. He will present a demo of Lablogatorios, the Brazilian science blogging network.
Zoe Hoyle works at the USDA Forest Service – Southern Research Station in Asheville, NC.
James Hrynyshyn is my SciBlings and a freelance science journalist based in western North Carolina. His blog is The Island of Doubt.
Tom Hughes is the Managing Editor in the Medical Center News Office at UNC.

My picks from ScienceDaily

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Clock Quotes

Christmas is not a time nor a season, but a state of mind. To cherish peace and goodwill, to be plenteous in mercy, is to have the real spirit of Christmas.
– John Calvin Coolidge

ScienceOnline’09 – introducing the participants 2

scienceonline09.jpg
Let’s highlight some more of the participants of this year’s ScienceOnline09 conference:
Russ Campbell is the Communications Officer at Burroughs Wellcome Fund.
Patricia Campbell is the powerhouse behind the Campbell-Kibler Associates, the FairerScience and the FairerScience blog.
Roy Campbell is the Director of Exhibits at North Carolina Museum of Natural Sciences.
Paul Cancellieri is a science teacher at Durant Road Middle School and he also writes a blog – Scripted Spontaneity.
Bill Cannon runs the new Science in the Triangle site.
Yang Cao is a Pediatric Epidemiology researcher at NIEHS.
Reed Cartwright is a postdoc at North Carolina State University, he blogs on De Rerum Natura and makes sure that The Panda’s Thumb looks good and functions flawlessly. He was also the editor of the last year’s edition of the science blogging anthology The Open Laboratory: The Best Science Writing on Blogs 2007.
Tiffany Cartwright (yes, she just happens to be married to Reed) is a blogger.
Christian Casper is a PhD student in the Program in Communication, Rhetoric, and Digital Media at North Carolina State University. He will co-moderate the session Rhetoric of science: print vs. web.
Anne Casper is a post-doc in Microbiology and Molecular Genetics at Duke, and is a SPIRE’s program fellow at UNC-CH.
Elle Cayabyab Gitlin runs Evoque and blogs on Ars Technica.
Kelly Chi is a freelance science and technology journalist.
Helen Chickering is the NBC News Channel Health and Science Correspondent, a freelance TV producer, and a board member of SCONC.
Sally Church runs Icarus Consultants, Inc and the Pharma Strategy Blog.
Chris Clouser is the Science Librarian for Indiana University of Pennsylvania and writes The Logical Operator blog.
Clinton Colmenares is the National Media Strategist in the Medical Center News Office at UNC.
Jayme Corbell is a chemist at Catalent.
Daniel Cressey is a writer for Nature News.
Cynthia Cudaback is an independent consultant at Ocean Consulting.
Ann Marie Cunningham is the executive director of Talking Science.
Marta Dark-McNeese is a physicist and a Professor at Spelman College.
Cathy Davies teaches Food Science at Gloucester County College and blogs on Lab Cat.
Erin Davis writes Spittoon, the blog of 23andMe.
Lynn Davis is the Instructional Designer at the Friday Center for Continuing Education.
Allen Dodson is a Science Policy Fellow and writes for ASBMB Advocate: A Monthly E-Newsletter on Public Affairs of The American Society for Biochemistry and Molecular Biology.
Danielle Duma is a Molecular Endocrinology researcher at the National Institute of Environemental Health Sciences (NIEHS).
John Dupuis is the science librarian at York University, Toronto and blogs on Confessions of a Science Librarian. He will co-moderate the session on How to search scientific literature.
Sam Dupuis is John’s son who, while still in high school, writes a science blog Science of Sorts on My Mind.

Amazing animal behavior: Battle at Kruger (video)

My picks from ScienceDaily

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Clock Quotes

Christmas is a bridge. We need bridges as the river of time flows past. Today’s Christmas should mean creating happy hours for tomorrow and reliving those of yesterday.
– Gladys Taber

New and Exciting in PLoS ONE

There are 20 new articles in PLoS ONE last night. As always, you should rate the articles, post notes and comments and send trackbacks when you blog about the papers. You can now also easily place articles on various social services (CiteULike, Connotea, Stumbleupon, Facebook and Digg) with just one click. Here are my own picks for the week – you go and look for your own favourites:
The Effects of Aging on Researchers’ Publication and Citation Patterns:

The average age at which U.S. researchers receive their first grant from NIH has increased from 34.3 in 1970, to 41.7 in 2004. These data raise the crucial question of the effects of aging on the scientific productivity and impact of researchers. Drawing on a sizeable sample of 6,388 university professors in Quebec who have published at least one paper between 2000 and 2007, our results identify two turning points in the professors’ careers. A first turning point is visible at age 40 years, where researchers start to rely on older literature and where their productivity increases at a slower pace–after having increased sharply since the beginning of their career. A second turning point can be seen around age 50, when researchers are the most productive whereas their average scientific impact is at its lowest. Our results also show that older professors publish fewer first-authored papers and move closer to the end of the list of co-authors. Although average scientific impact per paper decreases linearly until about age 50, the average number of papers in highly cited journals and among highly cited papers rises continuously until retirement. Our results show clearly that productivity and impact are not a simple and declining function of age and that we must take into account the collaborative aspects of scientific research. Science is a collective endeavor and, as our data shows, researchers of all ages play a significant role in its dynamic.

Chromosomal Inversions between Human and Chimpanzee Lineages Caused by Retrotransposons:

The long interspersed element-1 (LINE-1 or L1) and Alu elements are the most abundant mobile elements comprising 21% and 11% of the human genome, respectively. Since the divergence of human and chimpanzee lineages, these elements have vigorously created chromosomal rearrangements causing genomic difference between humans and chimpanzees by either increasing or decreasing the size of genome. Here, we report an exotic mechanism, retrotransposon recombination-mediated inversion (RRMI), that usually does not alter the amount of genomic material present. Through the comparison of the human and chimpanzee draft genome sequences, we identified 252 inversions whose respective inversion junctions can clearly be characterized. Our results suggest that L1 and Alu elements cause chromosomal inversions by either forming a secondary structure or providing a fragile site for double-strand breaks. The detailed analysis of the inversion breakpoints showed that L1 and Alu elements are responsible for at least 44% of the 252 inversion loci between human and chimpanzee lineages, including 49 RRMI loci. Among them, three RRMI loci inverted exonic regions in known genes, which implicates this mechanism in generating the genomic and phenotypic differences between human and chimpanzee lineages. This study is the first comprehensive analysis of mobile element bases inversion breakpoints between human and chimpanzee lineages, and highlights their role in primate genome evolution.

Is Replication the Gold Standard for Validating Genome-Wide Association Findings?:

With the advent of genome-wide association (GWA) studies, researchers are hoping that reliable genetic association of common human complex diseases/traits can be detected. Currently, there is an increasing enthusiasm about GWA and a number of GWA studies have been published. In the field a common practice is that replication should be used as the gold standard to validate an association finding. In this article, based on empirical and theoretical data, we emphasize that replication of GWA findings can be quite difficult, and should not always be expected, even when true variants are identified. The probability of replication becomes smaller with the increasing number of independent GWA studies if the power of individual replication studies is less than 100% (which is usually the case), and even a finding that is replicated may not necessarily be true. We argue that the field may have unreasonably high expectations on success of replication. We also wish to raise the question whether it is sufficient or necessary to treat replication as the ultimate and gold standard for defining true variants. We finally discuss the usefulness of integrating evidence from multiple levels/sources such as genetic epidemiological studies (at the DNA level), gene expression studies (at the RNA level), proteomics (at the protein level), and follow-up molecular and cellular studies for eventual validation and illumination of the functional relevance of the genes uncovered.

Compositional Genome Contexts Affect Gene Expression Control in Sea Urchin Embryo:

Gene expression is widely perceived as exclusively controlled by the information contained in cis-regulatory regions. These are built in a modular way, each module being a cluster of binding sites for the transcription factors that control the level, the location and the time at which gene transcription takes place. On the other hand, results from our laboratory have shown that gene expression is affected by the compositional properties (GC levels) of the isochores in which genes are embedded, i.e. the genome context. To clarify how compositional genomic properties affect the way cis-regulatory information is utilized, we have changed the genome context of a GFP-reporter gene containing the complete cis-regulatory region of the gene spdeadringer (spdri), expressed during sea urchin embryogenesis. We have observed that GC levels higher or lower than those found in the natural genome context can alter the reporter expression pattern. We explain this as the result of an interference with the functionality of specific modules in the gene’s cis-regulatory region. From these observations we derive the notion that the compositional properties of the genome context can affect cis-regulatory control of gene expression. Therefore although the way a gene works depends on the information contained in its cis-regulatory region, availability of such information depends on the compositional properties of the genomic context.

How to Blog?

Slate has this good article with the same title (yes, read it if you are interested in becoming or becoming a better blogger). I agree with everything in it, except for one piece of advice that I often see bandied about but think is totally wrong:

Don’t be too wordy. HuffPo says that 800 words is the outer-length limit for a blog post; anything longer will turn people off.

No. No. No.
This feeds nicely in what Ezra Klein wrote about it:

The specialized posts mix with the generalized posts — in my case, health wonkery rubs elbows with garden variety political punditry — and the two cross-subsidize each other. The rigor of the more technical work gives you credibility in the reader’s mind and adds weight to the generalist posts. The generalist posts broaden the blog’s potential audience and create access points that new readers wouldn’t have if you let the blog become a repository of technical commentary.
————snip———–
One sidenote here is that I find the question of “specialization” is interesting. Health care is not the thing I write the most about: Somewhere between 5 percent and 10 percent of my posts are health care related. During periods of political drama, that number drops further. Far more of my posts are on the Obama administration, and politics more generally. But people define blogs by what they produce that’s different from their competitors, not by what they offer that’s the same.

This is excellent advice – blog about everything that strikes your fancy, but also sometimes blog about your area of expertise. Mix it up, topic-wise, but also mix-it up format-wise: videos, pictures, one-liners, linkfest, short posts and, YES, long essays, especially in your area of expertise.
If you write a long essay in your area of expertise, people WILL read. Why? Because your blog post is likely to contain information they can not find anywhere else on the Web, let alone in the media.
So, even if you mostly post a bunch of quick-and-dirty posts on various topics, when you have something special to say, don’t be afraid to write 2000 or 3000 or 4000 or 5000 words. People will read that. And bookmark it. And put it on social networks. And e-mail it to friends. And discuss it in the comments. And respond to them on their own blogs. Those posts are the real gems of the blogosphere.
And how do you become an expert on a topic? You could go the usual way, through school or practice. But you can also become an expert if you constantly blog about something over the years. You dig through the literature, you read other bloggers who write about it, you get corrected by commenters, and soon become a knowledgeable and respected authority. You may still know less (but not always) than a person who got a PhD in the topic, but you will certainly know more than a journalist who writes on that topic because the editor said so – because you write, and thus learn, with passion.

Why can’t journalists call it as it is?

Researchers Hope Obama Team Will Reinvigorate Role of Science Adviser:

In recent years, though, some critics have charged that the science adviser’s influence has reached another low under President George W. Bush….

“Some critics”? Like, the entire scientific community? The entire science blogosphere? All the science journalists? Because of the obvious fact that the Bush Presidency is the pinnacle of the Republican disdain for reality, empiricism and science. Governing from the gut instead of from the brain. Governing by listening to direct messages from the Lord.
Because the conservative worldview is this:

The aide said that guys like me were “in what we call the reality-based community,” which he defined as people who “believe that solutions emerge from your judicious study of discernible reality.” … “That’s not the way the world really works anymore,” he continued. “We’re an empire now, and when we act, we create our own reality. And while you’re studying that reality–judiciously, as you will–we’ll act again, creating other new realities, which you can study too, and that’s how things will sort out. We’re history’s actors…and you, all of you, will be left to just study what we do.”

There, fixed it for you…

The year in crackpottery, and what it costs us.

The Touch That Doesn’t Heal :

Is there anecdotal evidence that unconventional therapies sometimes yield positive outcomes? Yes. There’s also anecdotal evidence that athletes who refuse to shave during winning streaks sometimes bring home championships. It was George D. Lundberg, a former editor of the Journal of the American Medical Association, who said: “There’s no alternative medicine. There is only scientifically proven, evidence-based medicine supported by solid data.” We’d do well to keep that in mind as we plot the future of American health care. It’s not like we’ve got billions to waste.

7 (Stupid) People Who Sued the Scientific Method:

Scientists study for years to give us advances like computers. Lawyers sue scientists on behalf of people who can’t operate computers, earn ten times as much and, in doing so, raise horribly relevant questions about which group is actually smarter. Here we see seven of the worst offenses of law against science:

The poison of positive thinking: How self-help culture helped create the credit crisis:

You might think the advocates of personal empowerment would feel chastened by the fact that all this rude interruption by reality comes at a time when positivity is being celebrated as never before. Think again. Rather than concede the fallibility of an unfailingly positive attitude, they counter that some negativity must have snuck in, queering the deal. (This is the logic Byrne used in blaming Hurricane Katrina victims for failing to repel the storm with upbeat vibes.) Vitale characterizes America’s doldrums as a byproduct of “the media bad-news scenario,” making it sound as if unemployment, the foreclosure crisis and the looming collapse of major industries didn’t exist until the media reported them. He argues that what we need now is even more pie-in-the-sky.

Celebrities are not very bright, suggest scientists:

We live in times when celebrities become mayors, governors, even presidents. They use their good looks and power to speak out about all the important things in the world. Like cancer. And fur. Which is, perhaps, why Sense About Science, an organization that exists to give a little scientific perspective in the midst of our madness, has published the Celebrities and Science Review 2008. This delightfully downloadable pdf shows celebrities for what they really are: somewhat deficient. Scientifically speaking. The report barely conceals its glee at what it sees as some of the magnificent nonsense that has emerged from celebrity brains, navigated celebrity tonsils and popped out from celebrity mouths in 2008.

The Year in Bad Science:

It’s only when you line these jokers up side by side that you realise what a vast and unwinnable fight we face.There was the miracle pixie dust which made a man’s fingertip grow back, although fingertips do just grow back by themselves.

Scientific illiteracy all the rage among the glitterati:

Talking sense: Two who got it right
*The writer Jilly Cooper gets nine out of ten for making a stab at why alternative treatments might work: “If you believe them, then they work.” That describes the placebo effect, where a harmless but useless remedy seems to work because the patient feels as if it is working.

Good – Jilly Cooper writes awesome sexy equestrian novels.

ScienceOnline’09 – introducing the participants

scienceonline09.jpg
So, let’s highlight some of the participants of this year’s ScienceOnline09 conference:
Eva Amsen is a newly-minted PhD in Biochemistry at the University of Toronto, and she blogs on Easternblot, Expression Patterns and Musicians and Scientists.
Melissa Anley-Mills is the News Director in the Office of Research and Development at the U.S. Environmental Protection Agency.
Samia Ansari is a Biochemistry Undergraduate student at the University of Georgia, and she blogs on 49 percent. She will co-moderate the session on Race in science – online and offline.
Apryl Bailey is the Creative Director and Production Manager at SciVee.tv. She will co-moderate the session Not just text – image, sound and video in peer-reviewed literature and will also do a demo of SciVee.tv.
Stacy Baker teaches high-school biology. She also writes a blog about the use of technology in teaching – Using Blogs in Science Education – and runs, together with her students, a classroom blog Extreme Biology (which just received the EduBlog2008 Award). Miss Baker and eight of her students will lead the session Science online – middle/high school perspective (or: ‘how the Facebook generation does it’?).
Enrico Maria Balli is one of the founders and the CEO of Sissa Medialab in Trieste, Italy.
Meredith Barrett is a Ph.D Student in the Duke University Program in Ecology at the Nicholas School of the Environment and writes (from the field, in Madagascar) her blog Lemur health & conservation. She will participate in the panel Blogging adventure: how to post from strange locations.
Karl Leif Bates is the Editor of Duke Research which is published by the Duke University Office of News & Communications and is a SCONC board member.
Arati Bechtel writes the JMP Blog. JMP is Statistical Discovery Software from SAS.
Mike Bergin is well known to the readers of my blog, as the blogger at 10000birds and the manager of I and the Bird blog carnival. He will moderate the session Blog carnivals: why you should participate.
Peter Binfield is a physicist and the Managing Editor of PLoS ONE. He will co-moderate the sessions on Reputation, authority and incentives. Or: How to get rid of the Impact Factor and Alternative careers: how to become a journal editor.
Larry Boles works at the Museum of Life + Science in Durham and blogs on their MLS Animal Department blog.
Mauricio Borgen is the IT Administrator at Athenix Corp.
Jean-Claude Bradley is a professor of chemistry at Drexel University. He is the pioneer of the Open Notebook Science movement, which you can see in action on his blog Useful Chemistry and the lab wiki UsefulChem Project. He will co-moderate the session Open Notebook Science – how to do it right (if you should do it at all)
Bjorn Brembs is a neuroscientist at Freie Universitat Berlin and a science blogger. He will co-moderate the sessions on Reputation, authority and incentives. Or: How to get rid of the Impact Factor and Open Access publishing: present and future.
Chris Brodie is the vice president of corporate communications at the North Carolina Biotechnology Center and one of the founders and board members of SCONC.
Daniel Brown is an IRTA Fellow in the Polypeptide Hormone Action Group at the National Institute of Environmental Health Science and blogs on Biochemicalsoul.
Christine Bruske-Flowers works in the Office of Communications for the National Institute of Environmental Health Science.
Steve Burnett is a musician, an acoustic ecologist and a blogger here in the Triangle.

Leopard takes down 2 Wildebeest (video)

My picks from ScienceDaily

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Clock Quotes

Christmas is a time when kids tell Santa what they want and adults pay for it. Deficits are when adults tell the government what they want – and their kids pay for it.
– Richard Lamm

New and Exciting in PLoS this week

So, let’s see what’s new in PLoS Genetics, PLoS Computational Biology and PLoS Pathogens this week. As always, you should rate the articles, post notes and comments and send trackbacks when you blog about the papers. Here are my own picks for the week – you go and look for your own favourites:
I Am Not a Scientist, I Am a Number:

Imagine a time when you and your complete scholarly output–papers, grant applications, blog posts, etc.–could be identified online and in perpetuity and returned in a variety of easy-to-digest ways. While ego comes into it as a driver to make this happen, measuring scientific career advancement is something that lacks good metrics in a digital world. Unless one has a truly unique name, applying such a metric is not possible now. Even with a unique name, what is the guarantee that all of our scholarly output will be captured by one source of that information? In the end, we as individuals are the only ones who reliably track our scholarly output. This situation is beginning to change, and, as we shall see, new metrics have the promise of much more than simply returning references to our collective life’s work as currently described by research papers, research proceedings, books, and book chapters. Although even a complete and current resume generated on demand would be a big step, if it could be returned in a variety of formats for a variety of purposes. These complete resumes are something many of us spend endless hours generating.

and more:

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A Year In Review – A Blog Around The Clock 2008

New Year’s Day, a time to reminisce about the past year, perhaps to analyze its ups and downs, and in the blogosphere: to link to one’s “Best of” posts for all of those who missed them.
I posted 2960 posts so far this year – with six days to go I may reach 3000. It is not easy sifting through all of those, so I picked the highlights for you here. Some are milestones, some are examples from multi-post series, some are posts that provoked a lot of comments, some are posts that took a lot of time and effort to write, and some are, well, just very long. There were other posts that elicited a lot of comments, or traffic or incoming links, or people found them useful or fun, but these choices, I think, best describe the year as a whole. Do these links tell a story?
January (205 posts) is always busy for me, finalizing the latest edition of the anthology (Open Lab 2007 – Up For Sale!) and organizing the conference – check out the videos and essential blog posts.
Thus, most of my blogging at the time is either related to these two events, or quick linkfests, videos and quotes. It was also the time of the early primaries, and although several candidates were still in the race at the time, we already started thinking about who the new President should appoint as the new Science Advisor. We had a vigorous debate here on scienceblogs about the grammatical correctness of Unshaven vs. Reshaven?. This was also the beginning of the Aetosaurs scooping saga.
I got hungry and posted my Mom’s recipe on How to Fix an Authentic Serbian Sarma (Stuffed Cabbage). We also did another round of “Ask the ScienceBlogger” and I responded with The Dangers of Blogging, or, the Quest for Male Contraception. This was also the last time I tried to quit posting Quotes, picks from ScienceDaily, links to carnivals, etc. as my commenters told me not to ever stop.
January was also the time when my Mom guest-blogged her second 5-part series here: Memories of War, Part I, Memories of War, Part II, Memories of War, Part III, Memories of War, Part IV and Memories of War, Part V.
At the end of the month, I started a series of interviews that spanned several months, covering 40 fascinating people, starting with Karen James. Oh, there was also science – The Hopeless Monster? Not so fast!
In February (225 posts), all the Quotes were from Charles Darwin. The problem of science popularization hits a snag in I inform people against their will!, but science education is doing fine – check out the local Island Project. But off the island, In Space, Holes are a problem.
Food and Guilt – questions about some extraordinary claims answered nicely in the comments. The interviews continue, including this one with Anne-Marie Hodge. The BlueSci interview went online.
We tried to remember our own Obsolete Lab Skills and I tried the Nth iteration of the answer to the life’s persistent question: What is a Science Blog? Finally, some fun science – Open Access Beer!
In March (241 posts) a bunch of bloggers answered the tough librarian’s question: How Do You Shelve Your Books? But then there was time for a little bit of science: Mel-Mel-Mel: it’s easy to remember in snowshoe hares. We got our first Super Readers and this blog received its 8000th comment.
I wrote a lot about telecommuting and related stuff, including about the 40-hour workweek. The series of scienceblogging interviews ended with a reverse interview – with me.
Then I penned a long rant about The so-called Facebook Scandal and an even longer follow-up – Individual vs. Group Learning Redux, both of which elicited a lot of heated commentary, and finally the third of the trifecta: ‘Generation’ is the mindset, not age.
Another off-the-cuff rant – Not all blogs are tech blogs. March was the month of Invertebrate Wars, the 5000th post and the millionth visitor to this blog, and the defense of profanity.
I was abroad for most of April (224 posts), so I picked a bunch of old good posts and had them scheduled for automatic re-posting during the month. The April Fool’s joke was about Brain Doping, which was taken too seriously by too many (and still is!). Before the trip, I wrote a comprehensive recap of all of my goings and doings of the previous month or so, with pictures. But before I left, there was enough time for another response to a clueless blog-basher: Moms, don’t let your daughters marry bloggers!
And then the EuroTrip started, with many, many posts (too many to link them all here today), each with many, many pictures! First stop – London, then Cambridge, then a great weekend in Cromer and back to Cambridge.
Next stop – Trieste, where I was on the Open Access panel (recordings are here), on the radio (recording is here) and the Science blogging panel.
Then, after thirteen years of absence, I arrived home in Belgrade, where I gave two talks about Open Access on the first day I arrived and did three radio interviews. I saw some of my childhood friends, and of course, the horses (with a follow up).
And while I was traveling, I posted the first guest-post by Anne-Marie Hodge: How do bats in a cave know if it is dark outside yet? So, yes, there was real science blogging on this science blog in April!
At the beginning of May (181 posts) I flew from Belgrade to Berlin and then finally came back home, just in time to vote in the NC primary.
There were some good answers in the comments of this post: Ettiquette for blogging a scientific meeting – a question. Why did I ask? Because I was about to go to reconnect with my tribe – the Society for Research on Biological Rhythms, from where came this long summary.
And I wrote a real science post as well – Clock Classics: It all started with the plants.
I started June (156 posts) with some thoughts on Historical Open Access. Then this video with a short commentary provoked so many comments that this post is still the starting point for an entire series of subsequent posts about the future of work, office, telecommuting and coworking.
Not everybody liked my review of Kung Fu Panda, though the NC symphony review apparently went over better. Then I briefly revisited academic blogging.
The new carnival – The Giant’s Shoulders got started. My paper on the future of the scientific paper got published. I made my first SPORE creature. Birds were the focus of the month in PLoS ONE.
And while I was galivanting around NYCity with my family at the end of the month, you could read the science post of the month: Why do earthworms come up to the surface after the rain?
In July (282 posts), blogosphere rose against Declan Butler and in defense of PLoS. Yes, some of the ScienceDebate2008 questions were, with permission, based on some of my questions.
Apart from politics, I went back (so rare these days) to debunking crackpottery. Then, When religion goes berserk! here, in the Balkans, and universally.
The documentary ‘Sizzle’ came out and a bunch of us here at scienceblogs.com got advance copies to screen. I wrote my review in two long posts, with lots of comments: Sizzle and Scientists are Excellent Communicators (‘Sizzle’ follow-up). Question: Are Science Movies Useful?
Back to an old topic of mine – Blog Carnivals – what is in it for you? I hosted the first edition of The Giant’s Shoulders and the seventh edition of Berry Go Round, then joined in the chorus debating the term Darwinist.
Some more on the media dinosaurs: Lee Siegel – who let him into a media room again?. Then The Web: how we use it. Finally, some science: Running the green light…. is all about cool chemistry.
August (306 posts) was a busy blogging month and a poetry month: There once was an Editor of FASEB…. and Well versed in science. Practical advice: What I try to do when I travel abroad across several time zones. Job-related: Post-publication Peer-review in PLoS-ONE, pars premiere. And a cool new site: iNaturalist rocks!
Back to teaching: BIO101 again and There is no need for a ‘Creepy Treehouse’ in using the Web in the classroom and Why teaching evolution is dangerous and What are teachers for?.
With the election approaching, I blogged about politics more than usual, doing my part in informing the voters, e.g., Vote McCain, The Wrecking Crew: How Conservatives Rule? By eliminating Free Market, of course, Just informing the voters…., Candidates on Science, and Palin?
Another epic: Importance of History of Science (for scientists and others). And another epic: Science vs. Britney Spears. And in the series of posts about workplace – Paperless Office? Bwahahahaha! and The 21st Century Workplace is wherever you and your laptop happen to be.
I hosted the first edition of Praxis. Celebrated the 6000th post here, 3 million pageviews and the 4th blogiversary. On wifi in hotels and watching the Olympics online: Rage 2.0 and a similar rant – Drinking Age?
SciBling MeetUp in New York City was a blast! Next thing, they outlaw cooking at home: it’s chemistry, after all…..
Want science? Domestication – it’s a matter of time (always is for me, that’s my ‘hammer’ for all nails) and Green Sahara Cemeteries and Rainforest Glow-worms glow at night because their clock says so and To Equine Things There is a Season (guest post by Barn Owl).
In September (325 posts) I received the 10,000th comment. PLoS ONE theme of the month were bats, and also a new push towards my own field. And I did a little analysis of my own traffic: What kinds of posts bring traffic?
We opened the submissions for the Open Lab 2008 and opened registration for ScienceOnline’09 which filled up in three weeks (we have about 30 people over limit, plus about 60 on waitlist!). And, the SciBlings and readers met at the Zoo for the Millionth Comment Party.
With the election in full swing, of course I covered politics a lot, several times a day, for example: Obama: Families are off limits, Obama answers science questions, If you are watching the RNC Convention and…., Compare and Contrast, Part 6, Palin – the fundraiser, Are they cheap, broke, or understaffed?, Just laugh at them, ‘Community Organizer’ – a dogwhistle for ‘Black rabble-rouser’, Obama Blasts McCain on Lipstickgate: Enough of the lies and distractions!. This kind of stuff tends to bring out the trolls.
Now, away from politics. How Inside Duke Medicine got revamped. Then, this was really cool: A non-biological biological clock. A book: The Divine Right of Capital. Not much time for science, but: ‘Normal’ body temperature? Not really. and Aerosteon riocoloradensis – the new dinosaur with hollow bones.
October (298 posts) brought an article in the local newspaper: From Telecommuting to Coworking. And that local newspaper was? Carrboro Citizen – a model for the newspaper of the future.
From there, I went into foodblogging – Offal is Good. And finally a serious post: Wikipedia, just like an Organism: clock genes wiki pages.
The program and organization of ScienceOnline09 got into full swing and the registration was completely filled up. We had a blogging contest for Open Access Day, and we got two winners: Greg Laden and Dorothea Salo.
This one was somewhat provocative: The Nobel Prize conundrum. And this one was provocative for a different reason: Obama-McCain race – a Serbian parallel lesson? When science and politics crash into each other: Palin, autism and fruitflies – it does not add up. And a book recommendation.
I wrote a recap of ConvergeSouth08. And I went to this symposium. And got interviewed again. Then I wrote something more serious: Information vs. Knowledge vs. Expertise.
November (233 posts) was marked by the saga of Roosevelts on Toilets in which I contributed this serious science post: Spring Forward, Fall Back – should you watch out tomorrow morning?
I did The Science Blog Meme. Into Balkan history: Semlin Judenlager. Watched Twilight.
Science: The map is in the bag, but the sequence may yet reveal if kangaroos have jumping genes and, related, Science by press release – you are doing it wrong.
I voted and was obviously happy with the outcome. Unlike four years ago, there was no need for long analytic “what the heck happened?” posts, but that did not deter me from opining about the political future: Transition and the new Cabinet, Post-election thoughts, Republicans? Who’s that?, Obama’s Transition and Will there be new communication channels in the Obama administration?
This golden piece of advice was discovered by one of my students, then, after I posted it, it spread like wildfire around the blogosphere. More science: Mining the Web for the patterns in the Real World. This was serious: Why does Impact Factor persist most strongly in smaller countries. And this is funny: What is wrong with the picture?
And finally, December (270 posts so far, but there will be more). I started by complaining about Google Blogsearch. Then we closed the submissions for the Open Laboratory 2008 and I posted all the entries.
I did the Five-Fiftysix meme and posted puzzle solutions the next day. We spent an hour on air on Radio In Vivo talking about science communication.
I found Inter-connectedness of science blogs interesting, noted the passing of H.M. and thought that Molecules with funny names are funny. So was Scarlett Johansson – Bioterrorist?
But Elites? That’s somehow bad? was a provocative post. And The Shock Value of Science Blogs was even more provocative.
Another two posts in the series on the topic I cover a lot lately – What’s an office for? and Co-Researching spaces for Freelance Scientists?.
Are you Managing your online persona like a Superhero? And another frequent topic here – Bloggers vs. Journalists morphs into Twitterers vs. Journalists and I compared Twitter and FriendFeed as used by companies, and ‘Newsworthy-ness’.
The preparations for ScienceOnline09 are in the final stretch. PLoS ONE turned Two, so we had a synchroblogging competition. The winner was Einstein was smart, but Could He Play the Violin?
Science: Clocks and Immunity and Elephants in zoos and Both Male-Male Competition and Mate Choice are parts of Sexual Selection and Evolutionary Psychology – why it is fundamentally wrong.
Who’s the Blogger Of The Year? What about the hypothesis that Blogs are a means to finding people to do rhythmic things with?
Well, that was fun. Have a great New Year and we’ll continue with the regular programing as usual. I hope you stay around next year and bring your friends….
Related: Year in Review 2007

Tigress Kill 14 foot Long Crocodile (video)

My picks from ScienceDaily

Continue reading

Clock Quotes

She played Bach. I do not know the names of the pieces, but I recognized the stiff ceremonial of the frenchified little German courts and the sober, thrifty comfort of the burghers, and the dancing on the village green, the green trees that looked like Christmas trees, and the sunlight on the wide German country, and a tender cosiness; and in my nostrils there was a warm scent of the soil and I was conscious of a sturdy strength that seemed to have its roots deep in mother earth, and of an elemental power that was timeless and had no home in space.
– W. Somerset Maugham

Evolutionary Psychology – why it is fundamentally wrong

Larry, Amanda, John, Mike and others are comenting, quite positively, on the recent Scientific American article – Evolution of the Mind: 4 Fallacies of Psychology by David J. Buller. And I agree – this is an excellent, well-deserved and well-thought smack-down of Evolutionary Psychology and I am happy that it appears in a popular magazine and is spreading around the blogosphere.
The Fallacy 1 – Analysis of Pleistocene Adaptive Problems Yields Clues to the Mind’s Design – is my favourite counter-argument when I hear someone offering an EvoPsych-style Just-So-Story, but the other three just as interesting and important:

Of course, some speculations are worse than others. Those of Pop EP are deeply flawed. We are unlikely ever to learn much about our evolutionary past by slicing our Pleistocene history into discrete adaptive problems, supposing the mind to be partitioned into discrete solutions to those problems, and then supporting those suppositions with pencil-and-paper data. The field of evolutionary psychology will have to do better. Even its very best, however, may never provide us knowledge of why all our complex human psychological characteristics evolved.

James Holland Jones wrote an interesting commentary on the article that in some details disagrees with Buller and, if anything, makes an even more potent criticism of EvoPsych:

I happen to think that the whole sex-differences in sexual preferences thing is the most overplayed finding in all of evolutionary science. In class, I refer to this work as Men-Are-From-Mars Evolutionary Psychology. The basic idea is to take whatever tired sexual stereotype that you’d hear in a second rate stand-up comedian’s monologue, or read about in airport bookstore self-help tracts and dress it up as the scientifically proven patrimony of our evolutionary past. Ugh.

Read both the Buller article and the Jones post in their entirety – they are excellent and provide a food for thought as well as ammunition for your next duel against one of the ‘true believers’ in EvoPsych.

Are you interviewing your family members today?

If so, record it, or write it down, upload a podcast or post on your blog. And:

After the overwhelming response to the National Day of Listening, we are hoping to pass on a new holiday idea: For everyone who did an interview surrounding the National Day of Listening (or are thinking about recording a loved one), making a copy of it and pairing it with a paperback copy of our book, “Listening is an Act of Love,” provides a meaningful touch to the holiday season, and gives that special someone even more incredible stories to read! The book as well as more DIY recording tips can be linked to at www.storycorps.net.

Twin baby moose in sprinkler (video)