Yearly Archives: 2007

Serbian War Criminal Advising US DoD on Iraq?!

Apparently, it is so.
Veljko Kadijevic, a former Yugoslav General who was indicted for War Crimes (mainly for the brutal destruction of the Croatian city of Vukovar early in the conflict) was never brought to justice (or even pursued by Croatia to be arrested – wonder why?) is apparently advising the US Department of Defense in Iraq.
As a West Point alumnus, Kadijevic had many connections with the US military throughout his career. But his poor military performance in the early nineties, if not his criminal status, should have been enough to keep him out of any kind of “advising” about anything.
But you know how the current US Administration operates in everything – hire the “friends” who owe you something and are incapable of doing the job well. Then blame the “government” and “liberal media”. Brownie.

My picks from ScienceDaily

Stealth Camouflage At Night:

Giant Australian cuttlefish employ night camouflage to adapt quickly to a variety of microhabitats on temperate rock reefs. New research sheds light on the animal’s remarkable visual system and nighttime predator/prey interactions. Cuttlefish are well-known masters of disguise who use highly developed camouflage tactics to blend in almost instantaneously with their surroundings. These relatives of octopuses and squid are part of a class of animals called cephalopods and are found in marine habitats worldwide. Cephalopods use camouflage to change their appearance with a speed and diversity unparalleled in the animal kingdom, however there is no documentation to date that they use their diverse camouflage repertoire at night.

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Genes, green caterpillars and brown caterpillars

About a year ago, there was a great paper about polyphenism in moth caterpillars.
Now, in the new issue of Seed Magazine, PZ Myers uses that example to teach you all about it. Cool reading on one of my favourite topics (outside clocks, of course).

Let’s play “Serbs” and “Croats”

Belgrade blog, Neretva River and Japan Probe solved the mystery of a couple of pictures (and discovered many more from the same source) depicting Japanese people wearing Serbian and Croatian uniforms – images that greatly disturbed many Serbian and Croatian bloggers for whom the war is still fresh in memory. Read their excellent posts and comments.
Even more puzzling was the fact that the uniforms were from several different periods and wars. There were Serbian and Croatian uniforms from the most recent conflicts, but also WWII-era uniforms of partisans, Chetniks and Ustasha.
a1%20-%20japanski%20Srbi.JPG
Apparently, the Japanese had a fun weekend doing battle re-enactments. This one was a Battle For Mostar which, in real life, was not fun at all (and was, mostly, between Bosnian Croats and Bosnian Muslims, not Serbs). I knew the Americans like to do Civil War battle re-enactments, but I had no idea the Japanese did the same. And why would they re-enact OTHER PEOPLE’s battles!? (OK, growing up we played ‘cowboys’ and ‘Indians’, as well as WWII-themed games with “Germans” and “partisans”)
a2%20-%20japanski%20Hrvati.JPG
Perhaps, this soon after the war, when the issues are far from settled, war criminals are still at large and the cangaroo court in The Hague (ICTY – International Tribunal for Yugoslavia) is still re-enacting Matlock episodes, the only place where one can safely “play” Balkan wars is a place as geographically and culturally distant as Japan (which was also one of the countries that was the most neutral during the conflict and had by far the best media reporting on it during the 1990s).

Happy Duck Stamp Day

duck%20stamp.gif

On this day in 1934 the US adopted the Migratory Bird Hunting and Conservation Stamp Act, commonly known as the Duck Stamp Act. Hunters are required to buy a stamp before bagging migratory birds like ducks and geese, with the proceeds earmarked for habitat preservation. The stamps themselves are so beautifully done that many non-hunters buy and display them as art. We won’t be hunting them, but here are a few quotes on Birds.

I once had a sparrow alight upon my shoulder for a moment while I was hoeing in a village garden, and I felt that I was more distinguished by that circumstance than I should have been by any epaulet I could have worn.
– Henry David Thoreau, 1817 – 1862
Use what talents you possess; the woods would be very silent if no birds sang except those that sang best.
– Henry Van Dyke, 1852 – 1933
Be grateful for luck. Pay the thunder no mind – listen to the birds. And don’t hate nobody.
– Eubie James Herbert Blake, 1883 – 1983
The eagle suffers little birds to sing,
And is not careful what they mean thereby.

– William Shakespeare, 1564 – 1616
Birds sing after a storm; why shouldn’t people feel as free to delight in whatever sunlight remains to them?
– Rose Fitzgerald Kennedy, 1890 – 1995
Be as a bird perched on a frail branch that she feels bending beneath her, still she sings away all the same, knowing she has wings.
– Victor Hugo, 1802 – 1885

From Quotes of the Day

ClockQuotes

Time is not a line, but a series of now-points.
– Taisen Deshimaru

Spirituality

I am always late for The Buzz. I just can’t blog on command.
Jason, Jason again, Mike, Mark, PZ and their numerous commenters have chimed in on time.
But the “sprituality” buzz is long gone and I am only now getting to the topic. Ah, well.
Anyway, it’s late at night so I will be short and only semi-serious….

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EcoBlogging of the Month

Oekologie #3 is up on El Gentraso. There’s everything there. Crime! Deceit! Pestilence! Goats!

EurekAlert! update

I got my rejection letter from EurekAlert earlier today. Apparently, the wording of the letter is somewhat different from what Hsien Li got a few days back and she has now posted both versions for you to compare.

Educated Skeptics

A brilliantly written Skeptics Circle #56 is up on Scientia Natura
The Carnival Of Education: Week 110 is up on Education Wonks.

We Like Round Numbers

Is it something about wholeness? Or milestones? But we certainly do like round numbers.
Of course, our numbers are social constructs. Our days and years are determined by the planet we are living on. Our number system is decimal presumably because we all start our early-years arithmetic by counting on our fingers – of which, on the last count, there are ten.
I remember back in middle school, I was actually quite good at math (my strength was in coming up with short, elegant solutions for geometry problems, but I also did well on logic, not so well on algebra), going to math competitions every year and often managing to do well enough to go through school, county, city (yes, Belgrade is big so it is composed of several counties) levels, but I never managed to get to the state or federal level, not to mention the Math Olympics – that was reserved for math geniuses.
As part of preparation for competition we had many, many volumes of collected problems from the past competitions at all levels and the only one I remember still, decades later, has something to do with our love for whole numbers and the way society builds a numbering system.
The problem, at first sight, looked deceptively simple – it was just yet another one of those calculations of the age of a person if you know the ages and/or relationships between the ages of several other people (e.g., A is 10, B will be twice as old as C in two years from now, how old is D?). So we thought nothing of it and started crunching numbers with glee….until we realized we could not do it – something was wrong, our numbers were all out of whack. What happenned?
Well, I am proud that I was the one who figured it out. You see, in order to make the problem a little more fun, they did not use Earthlings in this one, but Martians instead. And they even put a little cartoon picture of a smiling Martian right next to the problem. And, as it turned out, the picture was the clue. How often do you ever see a picture associated with a math problem, after all? The Martian in the picture had three fingers on each hand! The problem was really easy to solve using the number system with a base of 6!
Anyway, this whole rambling post about our love for whole numbers was inspired by a round number that happenned today (under the fold):

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ClockQuotes

Father Time is not always a hard parent, and, though he tarries for none of his children, often lays his hand lightly upon those who have used him well; making them old men and women inexorably enough, but leaving their hearts and spirits young and in full vigour. With such people the grey head is but the impression of the old fellow’s hand in giving them his blessing, and every wrinkle but a notch in the quiet calendar of a well-spent life.
– Quentin Crisp

Sleepwalking as an Alibi

Sandra has a post about an interesting case of a person who commited a crime (and was acquitted) while sleepwalking. The term “sleep disorder” was used as a defence.
But, is it a disorder at all? It naturally occurs in a proportion of human population. It is called a disorder because it does not happen to everyone and it can be dangerous for the sleepwalker or the people around him/her. Nobody is really trying to treat it, except for making sure that habitual sleepwalkers have a safe environment in which to walk at night (multiple complicated locks on the doors, etc).
Yes, you are completely unconscious, you cannot plan what to do once you are asleep and walking, you have no awareness of what you are doing while you are sleepwalking, and you have no recollection of what you did once you wake up. This would make acquittal a correct decision, without any need to invoke a ‘disorder’.
Yet, a person who would commit crime when awake will commit one when sleepwalking, and person who would never do so while awake is unlikely to get started while asleep.
Michael Rack does not have much on the topic on his blog, and neither does Michael Breus, but there is more here.
This is also similar to the case of sexsomnia.
So, what do you think? Is this a good alibi? If you did something bad while unconscious, would you want to be acquitted?

Do we really…

…want Alberto Gonzales to resign?

Happy birthday Craig

Go say Happy Birthday to Craig McClain on Deep Sea News

See the Future (of science publishing online)

Earlier today (or was it late last night?), I made separate posts about new work on aquatic microbial diversity, on the copyright issues when reporting on science on blogs and on general relationship between science publishers and blogs. Now, via Dileffante, I have learned about a combo of all those questions: when you are dealing with an enlightened organization, such as PLoS, magic can happen. Jonathan Eisen, author of one of the microbial genomics papers has, with no fear of copyright infringement, copied the entire paper on his blog. It is a first, isn’t it?

Everything you always wanted to know about crayfish but were too afraid to ask….

If (like me) you have a special fondness for crayfish, then this post by Burning Silo is a Must Read of the day!

AnthropoBlogging of the Week

Four Stone Hearth #11 is up on Aardvarchaeology

Using published images from scientific papers in blog posts

Pedro did some digging to figure out what are various journals’ policies regarding use of images – figures from the papers – in blog posts. It is all very vague and most journals do not have anything specifically targeting online republication, but the Fair Use rules should apply.
I have often used images from papers in my posts, usually only one, sometimes two from a single paper, which should be OK under the Fair Use system. In some cases I used figures that are many decades old, reprinted in every book and textbook in the field, used in every chronobiology college course in the world, and seen many times on slides at conference talks. Such images are now informally considered a common property – they are the icons of the field.
I have used more than 1-2 figures from a paper ONLY when I wrote posts about my own papers. But I do have the originals so I can always claim the ownership, or at least state that they were “redrawn after” an image in the paper (who cares what is redrawn after what and which image chronologically came first?).
Anyway, what do you do? Do you use sites like Free Biomedical Images?

Aquatic Microbial Diversity

Today is a big day on Plos-Biology for the Oceanic Microbial Diversity Genomics. Last night they published not one, not two, but three big papers chockfull of data.
Accompani\ying them are not one, not two, not three, not even four, but five editorial articles about different aspects of this work.
James has already homed in on one important part of the discovery: the preponderance and diversity of proteorhodopsins – microbial photopigments that are capable of capturing solar energy in a manner different from photosynthesis. As always, light-sensitive molecules are thought to be tightly connected to the evolution of circadian clocks so I expect to see some research on this in the near future.
The biggest challenge of this kind of research is how to take gobs of goo, i.e., the collective DNA from everything collected in the samples, and figure out which sequence belongs to whom. How many microbes have really been captured in the sample? How do those microbes look like? What can we say about their biochemistry, physiology and behavior? What can we say about their ecology and their evolutionary history? What counts as a ‘species’ in the asexual world of microbes?
The methods they use to try to start answering those questions are all genomic – other bloggers may be able to better understand and explain the details which involve various sequence alignments and comparisons to known microbial genomes.
What I’d like to see is a more ecological approach: sampling at different places, at different depths and at different times.
Many aquatic organisms, both unicellular and multicellular, are vertical migrants. They may swim up to the surface during the night and sink down to a greater depth during the day (or vice versa). Sampling at two or more different depths at noon and again at midnight and comparing the sequences can separate the genomes – those sequences that always appear together in the sample will belong to the same organism, those that sequester belong to different organisms.
Likewise, some organisms swim up to the surface only once a month during the full moon. Some never do and are always found only at greater depths. There is likely a seasonal change in the community compposition as well.
Of course, it is expected that different species will be found at different parts of different oceans, in rivers and estuaries, in lakes and streams, which can tell us something about the ecology of the organisms in each of these environments.
Finally, repeated sampling over a number of years at the same place, same depth and same time of day/lunar cycle/year will allow us to track the long terms effects of climate change on the aquatic communities.

Science Blogging of the Fortnight

Tangled Bank #75 is up on Living The Scientific Life.

Happy Birthday, Albert Einstein

Albert Einstein was born at Ulm, Germany on this day in 1879. It’s unlikely you need much background on the author of today’s quotes, so I’ll keep this short. Given how intelligent the man was, it shouldn’t come as a surprise that he had a number of choice comments on the fools around him.

Anger dwells only in the bosom of fools.
Any intelligent fool can make things bigger, more complex, and more violent. It takes a touch of genius – and a lot of courage – to move in the opposite direction.
Before God we are equally wise – and equally foolish.
Common sense is the collection of prejudices acquired by age eighteen.
Only two things are infinite, the universe and human stupidity, and I’m not sure about the former.
The difference between what the most and the least learned people know is inexpressibly trivial in relation to that which is unknown.

– All from Albert Einstein, 1879 – 1955

[From Quotes of the Day]

My picks from ScienceDaily

A Rarity Among Arachnids, Whip Spiders Have A Sociable Family Life:

Whip spiders, considered by many to be creepy-crawly, are giving new meaning to the term touchy-feely. In two species of whip spiders, or amblypygids, mothers caress their young with long feelers and siblings stick together in social groups until they reach sexual maturity. This is surprising behavior for these arachnids, long-thought to be purely aggressive and anti-social, according to a Cornell researcher.

New Species Of Snapper Discovered In Brazil:

A popular game fish mistaken by scientists for a dog snapper is actually a new species discovered among the reefs of the Abrolhos region of the South Atlantic Ocean.

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Blooker Prize shortlist announced

Paul announces that the finalists for the 2007 Lulu Blooker Prize have been announced.
Unfortunately, The Open Laboratory was finished after the deadline for submission. Perhaps we can submit it for the 2008 Prize!

The Tar Heel Tavern – call for submissions

The next edition of The Tar Heel Tavern will be held at The View From The Cheap Seats
The theme will be “According to…”
The idea will be to post something prominently featuring another’s work. Preferably that of another Carolina blogger; but it could be of a national blogger, a book, an MSM article, etc. Send your stuff to: justin AT cabarruscheapseats DOT com

FoodBlogging 2007

We are starting this summer’s Foodblogging series of events early – on April 21st & 22nd. We’ll start where it all begins – at the farm! We will rent a couple of vans and do a tour of local farms, most of them organic and/or sustainable. I am assuming we’ll get to sample some local fare at each farm. Bring your boots – it can still be quite muddy at the farms in April in NC.
Get more information about the FoodBlogging series and sign up for various events at the wiki.

Happy Pie Day

pie.gif
Oooops! It is actually Pi Day!

ClockQuotes

Time is slippery.
– Kim Linder

You can help a fellow blogger

Lindsay Beyerstein, aka Majikthise, needs and deserves your help. So go now and hit her PayPal button. Help Lindsay become a pro blogger. She is one of the best there is.

Seed and Threadless

You’ll have to work fast – there are only five days left – but you can win some nice big prizes if you make the winning design for the Threadless T-shirts with the theme “Science Is Culture”.

You can help kids get excited about marine science

Here’s an educational program worth supporting – Oceans Wide gets kids involved in marine science up in Maine. Craig, over on Deep Sea News has all the details. I wish there were programs like this when I was a kid! I had to learn all my science on my own, from dusty books!

Science Spring Showdown 2007 starts today!

If, like me, you don’t give a rat’s behind for the basketball tournaments and brackets but are interested in science, then go ahead and make your predictions in the Science Spring Showdown 2007 tournament over on World’s Fair. Various Sciencebloggers will write “Basics”-style posts in defense of one concept or another, you will vote for winners and if you correctly guess all the winners – well, I don’t know what will happen, but you will certainly become immensely famous around these parts, at least.
So, donwload the brackets, fill out your choices and follow the tournament at the Press Center over the next several days.

Are we Press?

Hsien reports that the CEO of b5media (organization that hosts her blog) left a comment on Panda’s Thumb (why not on her blog which is, after all, a b5media blog?) in which he states that:

All it takes for us to issue bloggers accreditation is that we – are you ready for this? – issue them press badges and register those badges with one of the two dozen journalist associations in north america.

That’s not how it sounds from what the AAAS person said, but OK, we’ll see how it all develops.
So, if I want to get a paper that is under the embargo in order to have sufficient time to read it and have a post written and ready to go as soon as the embargo expires – do I just ask SEED for a badge? Is it that simple? Somehow I am still skeptical that AAAS and EurekAlert would buy it. I’d like for someone to explain in a little more detail with a little more clarity, please.

Dialectize Me!

If you think my blog is boring as it is, you should try using Dialectizer or Gizoogle, so you can read it in jive or redneck dialect, or a few more….

Beagle Project update

Go here to get the code to put on your sidebar so your visitors can donate to the Beagle Project:

 

Today’s carnivals

Encephalon #18 is up on Pharyngula
Grand Rounds 3.25 are up on ScienceRoll
Carnival of the Green #68 is up on Green Fertility

My picks from ScienceDaily

Male Reindeer Inflate Their Air Sac To Make Sexually Enticing Hoarse Rutting Calls:

A group of European scientists have determined that a male reindeer’s air sac, influencing vocal sound and neck contour, may contribute to his sexual prowess and reproductive success. The results of this research have recently been published in Journal of Anatomy.

Continue reading

ClockQuotes

A man with a watch knows what time it is. A man with two watches is never sure.
– Segal’s Law

Is that a snake in your pocket or are you just happy to see me?

I think Jenna was happy to have a snake in her pocket….

Daylight Saving Time

This is the time when everyone is talking about the Daylight Saving Time and I always feel pressure to blog about it from a chronobiological perspective. And I always resist. As I will this year. So, here are a couple of related links instead:
Larry provides a brief history of time zones and the Dalyight Saving Time (and a cool map that goes with it).
Dave finds some data that the DST does not actually save any energy.
Among numerous newspaper articles, I thought this Boston Globe one gives the most accurate summary of what DST does to our circadian rhythms and sleep. It explains why it takes us several days to adjust to DST when our clocks are normally capable of phase-shifting one hour in one day. Why are there 10% more car accidents today than on any other day of the year? However, it does not mention that people with circadian disorders such as SAD and Bipolar Disorder suffer more due to DST (the SAD patients throughout the winter – today is the happy day of final release from the winter blues; the BP patients suffer most on the two days of the year at which the shifts happen).

On This Day in History

Zoran Djindjic, the first person I ever voted for, was assassinated on this day four years ago. He had the guts to deport Milosevic to The Hague and he got paid for it with a bullet.

NC Blogging of the week

The number-obsessed Tarheel Tavern #107 is up on Scrutiny Hooligans.

ClockQuotes

Everything we feel is made of Time. All the beauties of life are shaped by it.
– Peter Shaffer

PERIOD clock gene variants affect sleep need in humans

The most exciting thing about this study is that this is, as far as I am aware, the first instance in which it was shown that a circadian clock gene has any effect on sleep apart from timing of it, i.e., on some other quality or quantity of sleep (not just when to fall asleep and wake up, but also the depth of sleep and the amount of sleep need):
Performing Under Sleep Deprivation: Its In Your Genes:

People are known to differ markedly in their response to sleep deprivation, but the biological underpinnings of these differences have remained difficult to identify.
Researchers have now found that a genetic difference in a so-called clock gene, PERIOD3, makes some people particularly sensitive to the effects of sleep deprivation. The findings, reported by Antoine Viola, Derk-Jan Dijk, and colleagues at the University of Surrey’s Sleep Research Center, appear in the journal Current Biology, published by Cell Press.
There are two variants of the PERIOD3 gene found in the human population, encoding either long or short versions of the corresponding protein. Each individual will possess two copies of the gene, either of which might be the long or short form. Previous work had indicated that the different forms of the gene appear to influence characteristic morning and evening activity levels–for example, “owl” versus “lark” tendencies.
In the new work, a multidisciplinary research team consisting of biological scientists and psychologists compared how individuals possessing only the longer gene variant and those possessing only the shorter one coped with being kept awake for two days, including the intervening night. The researchers found that although some participants struggled to stay awake, others experienced no problems with the task.
The results were most pronounced during the early hours of the morning (between 4 and 8 a.m.), during which individuals with the longer variant of the gene performed very poorly on tests for attention and working memory.
The authors point out that this early-morning period corresponds to stretches of time when shift workers struggle to stay awake, during which many accidents related to sleepiness occur. But the scientists also emphasize that the new research was conducted in the laboratory, and whether forms of the PERIOD3 gene also predict individual differences in the tolerance to night-shift work remains to be demonstrated.
An additional finding was that the effects of this gene on performance may be mediated by its effects on sleep. When the volunteers were allowed to sleep normally, those possessing only the longer form of the gene spent about 50% more of their time in slow-wave sleep, the deepest form of sleep. Slow-wave sleep is a marker of sleep need, and it is known that carrying a sleep debt makes it very difficult to stay awake and perform at night.
The findings highlight a possible role for clock genes in human sleep physiology and structure, and the influence these genes might have on performance by unrested individuals.

A data point for net neutrality

Abandoning Net Neutrality Discourages Improvements In Service:

Charging online content providers such as Yahoo! and Google for preferential access to the customers of Internet service providers might not be in the best interest of the millions of Americans, despite claims to the contrary, a new University of Florida study finds.
“The conventional wisdom is that Internet service providers would have greater incentive to expand their service capabilities if they were allowed to charge,” said Kenneth Cheng, a professor in UF’s department of decision and information sciences. Cheng and his co-authors are scheduled to present the findings at the International Conference on Information, Technology and Management in New Delhi, India, next week. “That was completely the opposite of what we found.”

Blogrolling

Brainrow

This Week in Evolution

Framing Conflict

The herptile blog

Bearded Dragon Resource Blog

East Bay Vivarium Blog

Philly Herping

Stewed Thoughts

The Thinking Blog

Mousemusings

Pediatric Blogging of the Month

Pediatric Grand Rounds: Volume 1, Issue 24, are up on Blog, MD

Happy Birthday Douglas Adams

Douglas Noel Adams was born at Cambridge, England on this day in 1952. After earning both bachelors and masters degrees there, he did some comedy acting and writing, including work with a couple of the Monty Python gang, and eventually wrote a radio series for BBC called “The Hitchhiker’s Guide to the Galaxy.” It first became a TV series, then a book. Actually a trilogy, which means that there are three volumes, except that this one has five. It had some science fiction elements, there’s a dash of philosophy, but it was comedy. Here’s a sample:
A common mistake that people make when trying to design something completely foolproof is to underestimate the ingenuity of complete fools.
Human beings, who are almost unique in having the ability to learn from the experience of others, are also remarkable for their apparent disinclination to do so.
If it looks like a duck, and quacks like a duck, we have at least to consider the possibility that we have a small aquatic bird of the family anatidae on our hands.
My doctor says that I have a malformed public-duty gland and a natural deficiency in moral fibre, and that I am therefore excused from saving Universes.
This planet has – or rather had – a problem, which was this: most of the people living on it were unhappy for pretty much of the time. Many solutions were suggested for this problem, but most of these were largely concerned with the movements of small green pieces of paper, which is odd because on the whole it wasn’t the small green pieces of paper that were unhappy.
Totally mad. Utter nonsense. But we’ll do it because it’s brilliant nonsense.

– All from Douglas Noel Adams, 1952 – 2001

From Quotes of the Day

My picks from ScienceDaily

Species’ Sizes Affect Lives Of Cells In Mammals:

Cells from the smallest to the largest of mammals often seem to be “one size fits all.” Now a closer look reveals that whether a cell lives in an elephant, mouse or something in between can make a big difference in its life. Researchers from the University of Florida Genetics Institute, Harvard Medical School and other institutions developed mathematical models that they used to examine 18 cell types from mammals ranging from mice to elephants. They found two basic categories — cells that stay the same size but have drastically different energy needs that depend on the size of the mammal, or cells that grow larger in larger mammals and use energy at the same rate, no matter the mammal’s size.

Gene Transfer Between Species Is Surprisingly Common:

Bacteria are known to share genes, spreading drug resistance, for example. But how common is it in other organisms, including mammals like us? Two new studies show that most bacteria have genes or large groups of genes shared by other bacteria. Even among higher organisms, shared genes are the rule rather than the exception, UC Berkeley and LBNL researchers say.

Continue reading

ClockQuotes

The generations of living things pass in a short time, and like runners, hand on the torch of life.
– Lucretius