Yearly Archives: 2007

My picks from ScienceDaily

Nonvenomous Asian Snakes ‘Borrow’ Defensive Poison From Toxic Toads:

Most snakes are born with poisonous bites they use for defense. But what can non-poisonous snakes do to ward off predators? What if they could borrow a dose of poison by eating toxic toads, then recycling the toxins? That’s exactly what happens in the relationship between an Asian snake and a species of toad, according to a team of researchers funded by the National Science Foundation (NSF) Division of Integrative Organismal Systems (IOS).

More….

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Clock Quotes

Early to bed and early to rise makes a man healthy, wealthy, and wise.
Benjamin Franklin (1706 – 1790)

Anthropology and History Blogging of the Week

Four Stone Hearth #8 is up on Northstate Science
The 47th History Carnival is up on ProgressiveHistorians

The Most Fantastic Blogospheric News of the Day (or longer) – Part Deux!

How many such pieces of news can one survive in one day!
Now that Amanda has been welcomed by concern-troll-mysoginists who followed her from her blog to the Edwards campaign blog (where, frankly, nobody lets them stir the pot) there is another great piece of news!
Melissa McEwan, aka Shakespeare’s Sister was also hired by the Edwards internet team. Go say Hello to her as well. Edwards certainly has great taste and good sense how to win over the netroots!

If you are a Triangle area blogger…

…I’ll see you here tonight at 8pm.
Which is right now!

Greenwich time to remain Greenwich time

In light of my post earlier today about the discrepanices between ‘real time’ and ‘clock time’ (or ‘social time’), it is heartening that the Parliament in the U.K. wisely decided not to switch their clocks to the time the rest of Europe observes. If they did, they would be seriously out of whack. After all, at Zero Meridian in Greenwich (yup, I stood astride it, of course), midnight is really midnight – it is the middle of the time zone. Resetting it by one hour would put the Brits at the far Western edge of another time zone and they would always experience true midnight a long time (60-120 minutes!) after the clocks say it is midnight (the same goes for dawn, noon, dusk and any other time).
Now, if they (and us and everyone else) could only decide not to go through the twice-annual ritual of re-setting the official clocks by one hour (Spring forward, Fall back), that would save a lot of lives….

New Model for Interval Timing

While study of Time-Perception is, according to many, a sub-discipline of chronobiology, I personally know very little about it. Time perception is defined as interval timing, i.e., measuring duration of events (as opposed to counting, figuring which one of the two events happened first and which one second, or measuring time of day or year).
Still, since this blog is about all aspects of biological timing, I have to point you to a new paper in Neuron (press release) about a new computer model for human time-perception.

“If you toss a pebble into a lake,” he explained, “the ripples of water produced by the pebble’s impact act like a signature of the pebble’s entry time. The farther the ripples travel the more time has passed.
“We propose that a similar process takes place in the brain that allows it to track time,” he added. “Every time the brain processes a sensory event, such as a sound or flash of light, it triggers a cascade of reactions between brain cells and their connections. Each reaction leaves a signature that enables the brain-cell network to encode time.”

Of course, this is a little vague as far as neurophysiology goes, and we need to remember that even the most brilliant mathematical model may end up being wrong. Still, the model seems nifty and I hope they follow up with real lab work to test it.
Steve of Omni Brain has more and points to this 2005 review of the topic in Nature Review Neuroscience.

Green Invertebrates

Circus of the Spineless #17: The Symbology of Invertebrates is up on The Voltage Gate
Carnival of the Green #62 is up on Jetson Green

Liberal Blogging of the week

Carnival of the Liberals #31 is up on Pollyticks.com

Ugh!

You may have heard that Joe Biden announced today (or was it yesterday, who pays attention any more) that he is running for President. Just like he announced last week. And the week before. And several consecutive weeks before that. Still hoping someone – anyone – would notice.
But also, Joe Biden announced today that his Presidential campaign is over:
Biden
Biden?
Biden!

Sun Time is the Real Time

Blogging on Peer-Reviewed Research

If you really read this blog “for the articles”, especially the chronobiology articles, you are aware that the light-dark cycle is the most powerful environmental cue entraining circadian clocks. But it is not the only one. Clocks can also be entrained by a host of other (“non-photic”) cues, e.g., scheduled meals, scheduled exercise, daily dose of melatonin, etc.

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‘Pulp Fiction’ does not need to pay copyright, just be honest

'Pulp Fiction' does not need to pay copyright, just be honest(August 10, 2005)

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Science Blogging of the Fortnight

Tangled Bank 72: What’s in a name? Read the best of last two weeks’ science blogging on Ouroboros.

Is it possible to collect enough this way?

Graduate school is expensive, even with grants and loans. Perhaps if a lot of A-listers linked to this, it could be possible to collect enough. (via Chickpea Science)

My picks from ScienceDaily

Student’s Research With Disney Giraffes May Help Conserve Several Species:

University of Central Florida doctoral student Jennifer Fewster is studying giraffe excrement at Disney’s Animal Kingdom Lodge in Lake Buena Vista in an effort to figure out what the animals eat in the wild and to improve the nutrition of those in captivity.
Fewster’s research, conducted in January and February, could potentially help conserve a wide array of herbivores, including endangered ones.
“I find it fascinating, but I forget people find it odd,” Fewster said. “It’s not the most glamorous work. In fact, it can be a bit boring at times, but the goal is worthwhile and it has applications for the wild and for the better care and nutrition of animals in captivity.”

More….

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Clock Quotes

Regret for wasted time is more wasted time.
Mason Cooley, O Magazine, April 2004

Network-like Mode of Thinking

I am so glad to see that conversations started face-to-face at the Science Blogging Conference are now continuing online (see the bottom of the ever-growing linkfests here and here). While some are between science bloggers, as expected, others are between people who have never heard of each other before and who came from very different angles and with different interests. The cross-fertilization we hoped for is happening (and if you had such an experience, let us know)!
See, for instance, what a casual chat over lunch at the Conference did to David Warlick – made him think about education and about online technologies from a – new to David – perspective of someone who watches the way scientists think:

…He said that science used to be reductionist in nature. I asked what that meant, and he said that science was about drilling down to components, cutting out and examining bits of the world, reducing it to its barest fundamentals. He said that the younger scientists spend more time synthesizing, that they seem much more interested in systems and networks, not so much how things operate independently, but how they operate as part of a larger organism, ecosystem, or cosmos.
I suspect that all kinds of speculation might be made about why science seems, at least in the eyes of this science communicator, to be shifting, and one could probably make a case relating it to younger scientists’ digital experiences. The connection that occurred to me, however, was with schools, which seem to me to be in a reductionist mode still…..
——–snip————-
My own state, for one, has been teaching and testing computer skills for more than ten years. However, it is a reductionist response to the need for digital literacy (what I call contemporary literacy). We have reduced computer skills out into their own list of standards, separated again into objectives, and performance indicators. We’ve reduced it down to components that can be discretely measured.
I don’t think that this happens entirely because of the industrial mechanized environment that many of us come from. I think it’s just easier to separate things out and teach them in isolation, especially when we believe that our job is to simply teach.

Read the rest…then go and comment on his blog with your ideas. Cross-fertilize some more!
Technorati Tag:

EduBlogging of the week

Teaching Carnival #19 is up on Scribblingwoman
The 104th Carnival of Education is up on The Median Sib
57th Carnival of Homeschooling is up on PalmTree Pundit

But can you…

…handle the Truth?

Copycats!

Ha! We broke the ice and now others are following our example. The Best of Technology Writing 2007 is being planned (hat-tip: Pimm).
I think this is great! Biotech articles are welcome as well, so send in your faves for consideration. Of course, they are a little timid – non-blog articles can also be included, and they intend to work on it for something like nine months! I guess they are not nuts like me….
What is next? Medical Blogging Anthology? Who is going to spearhead that project?

Blogrolling – added today

Scientia Natura: Evolution And Rationality

Blogfish

Agricultural Biodiversity Weblog

1Third

Live-awake

Weblog

Eco-Chick

A History of Histrionics

Scaryduck

The Beagle Project Blog

Slow Down Now

Blackprof

Eyeteeth

The Southern Fried Skeptic

Spewing Truth in the face of lies

Insufficiently advanced

CUTE THINGS FALLING ASLEEP

Snoozester

The Most Fantastic Blogospheric News of the Day (or longer)!

Amanda Marcotte of Pandagon, the quickest draw of the Internets, the master of witty blog titles, and the scourge of mysoginists worldwide (like my regulars could avoid my almost-daily links to Pandagon and don’t know who she is…), has just become the Blogmaster of the John Edwards campaign blog. Some of the bestest, snarkiest bloggers are joining Pandagon at the same time. And Amanda is moving to Chapel Hill so we finally get to meet! Waaaaay tooooo cooool!

MedBlogging of the Week

Grand Rounds: 3.19 are now up on Envisioning 2.0

We Get Mail…

[Pushed to the top of the page due to interesting updates…]
Ah, the perils of growing traffic! I get e-mail. Usually those are nice questions about sleep disorders, or requests for link exchanges. But today I got a christianist. Oy vey!
I hope I never get PZ’s traffic – I guess he gets dozens of those a day! And I don’t even bash religion on my blog every day like he does.
Below the fold is the exchange so far:

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Teen Parenthood for the X-box generation

Teen Parenthood for the X-box generationParenting is hard. Are you ready (re-posted from October 20, 2005)

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My picks from ScienceDaily

As always, see how well the press release matches the actual paper:

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Clock Quotes

If you can’t sleep, then get up and do something instead of lying there and worrying. It’s the worry that gets you, not the loss of sleep.
Dale Carnegie

Around The Science Blogs….

The ‘Basic Concepts in Science” list is getting longer and longer every couple of hours or so, it seems. Try to keep up with it. You may even want to Google-bomb (by linking using the same words as Wilkins does) some or all of the posts if you think they should come up on top in Google searches for these terms. Dan adds his own contribution on Cell Migration and Jennifer makes a wish-list for the Top Ten Physics Concepts that need to be included. To those, I’d add the series on statistics by ECHIDNE OF THE SNAKES: Part 1: Samples, Part 2: Probability, Part 3: Sample Statistics, Part 4: Sampling Distributions and Part 5: Constructing a Confidence Interval for the Sample Proportion.
If you know of an open-source, open-access journal that is not on this list, let Jackie know about it. Let’s fight the nasty anti-open-science PR!
Are you an Academic? And male? If so, you may be a ‘babe magnet’. Or not (Dr.Petra is an expert in administering cold showers).
Are you going to take the blog course on Joys of Science along with Zuska?
Magical Properties of Water (bought last week in my neighborhood): Part 1 and Part 2. Scooped Orac for the Friday Dose Of Woo series this week!
Vaughn of Mind Hacks is not surprised that ‘sleep’ is on the Wired Magazine’s list of 42 biggest unanswered questions in science. Though I’d say the magazine’s short blurb is at least mammalocentric if not entirely anthropocentric, as well as mildly adaptationist. After all, we have no idea why fruitflies sleep!
Alon Levy nicely rips into Steven Pinker, over on 3 Quarks Daily. Interestingly, he is stil linking back to his old flop-of-a-post on Lewontin that was debunked here.
There is a new group discussing Philosophy with emphasis on religion and Creationism. Catch up with them on their blog and forums.
John Hawks reviews a new paper on signalling in monkeys by Frans de Waal.
Everything you need to know about the Seismosaurus.
Pictures of some science bloggers at the conference last week. Can you recognize everyone? Perhaps this will help.

Chapel Hill-Carrboro Blogger Meetups – new time and place!

All the new information is here – four meetings over the next month: one in cyberspace, two in the Real World (sitting and sipping coffee) and one in the Real World (moving about and doing fun stuff).

She Has Good Instincts!

Kate Michelman, lifelong feminist and former head of NARAL, talks about why she’s signed up to work for John Edwards (click through the ad to read the entire thing):

….I think that says a lot about his seriousness and commitment to addressing the experiences of women in society. I think it speaks very well of him. And while I’ve been a leader on women’s liberties and equality, I’m known mostly for my work on reproductive rights, which could make a candidate feel somewhat reluctant or questioning. But it didn’t with John and Elizabeth.
I have often felt that in the past, campaigns have paid lip service to women, or treated them as a constituency. Well, excuse me. I hate to be treated as a constituency. We are people. We are a force, a vital centerpiece of society as a whole — and in the past I have felt insulted that issues of concern to women have been given only lip service. But John is doing anything but that. Bringing someone like me on board is a real statement about that…

Read the whole thing.

Responsible consumption of shrimp

I love seafood, but I eat it quite rarely. About a third of my old Department did fisheries and aquaculture science so I’ve seen many seminars and Thesis defenses on the topic and am quite aware of the problems with the world’s fisheries stocks.
I also prefer freshwater fish – I grew up on the Danube and my Mom fixes the best Fish Soup in the history of the Universe.
But, if you like seafood and you want to eat shrimp occasionally, yet you want to act in an environmentally responsible way, you need to know quite a lot about ecology, about behavior and natural history of shrimp, about the methods of harvesting and/or farming shrimp, about the way shrimp are processed and marketed. Armed with all that information, you’ll know where, when, how, how often and from whom to buy shrimp. It is not easy to find all that informaiton, but now you can find it all in one place.
Mark H (better known around science blogs as the person running the Biomes Blog), as a part of his marvelous Marine Life Series, has put it all together here.
He even provides a recipe at the end, which looks promising – I may try to use it one day, once I figure out how to find environmentaly not-so-bad shrimp around here.

NeuroBlogging of the fortnight

Encephalon #15: Neuroscience Blog Carnival is up on SharpBrains.

New potential sleeping pill

If you discover a brain chemical which, when missing or malfunctioning (due to a mutation in its receptor) abruptly puts people and animals to sleep when they don’t want to – a condition called narcolepsy – then you can work on creating a drug that acts in the opposite way and induces sleep when you want to.
Apparently, that is what a Swiss team just did (Nature news report here and Nature blog commentary here). The drug, still without a sexy name, is known by its “code-name” ACT-078573.
The target of the drug is the orexin system. Orexins (also known as hypocretins – the discovery was simultaneous in two laboratories several years ago and both terms are in equal use in the literature – you may remember one of the studies as it received some media coverage because it tested narcoleptic Doberman pinchers) are two closely related neuropeptides (orexin 1 and orexin 2). They are produced by cleavage of a single precursor protein. They are strongly conserved through the vertebrate evolution. They are produced in a small cluster of nerve cells, but those cells make projections widely across the brain.
The major function of orexins is to integrate circadian, sleep and metabolic information to determine if the animal should be awake or asleep. The connection to metabolism is also responsible for a secondary role of orexins in the control of appetite.
In narcoleptic people (or dogs), the levels of orexin are very low, or the orexin receptor is not functioning. In other words, the funciton of orexins is to promote wakefulness. ACT-078573 is an orexin antagonist – it blocks effects of orexin, thus promoting sleepiness.
It is too early to talk to your physician about this drug yet. This was just a first preliminary study. The drug was given only once, so we do not know possible effects of prolonged use. It was given to 42 healthy males with no history of sleep disorders, thus we do not know how it would effect women, children or people WITH sleep disorders – exactly those who would potentially benefit from this drug.
Just because a single use did not provoke other symptoms of narcolepsy – loss of muscle tone, loss of coordination and hallucinations – does not mean that long-term use of the drug would not result in such side-effects (after all, even the early narcoleptic events in affected people do not usually have such side-effects – they develop over time).
Another consideration is timing. In the study, the drug was given during the day when the orexin levels are naturally high (remember – orexin promotes wakefulness). We do not know what effect, if any, the orexin antagonist would have at night when orexin levels are naturally low. After all, as with all drugs targeting the circadian system, the effect is highly dependent on timing.
Another concern is with a possible side-effects of the drug on the appetite. Though this may be turned into a positive for the drug if it can be shown to be useful in control of appetite. Nothing sells better than sleep pills except the diet pills, after all!

Fish Eyes

Fish EyesLots of food blogging around here lately, so why not re-post this one (from October 27, 2005):

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Is it really counter-propaganda?

As a follow-up on the whole PETA brouhaha, my astute commenter oneproudaardvark notices that the SOTU-farce ad campaign by PETA is strangely coinciding with the beginning of the trial against PETA for butchering dogs in the back of the truck here in North Carolina. Cosmic synchronicity? Don’t think so….

Listen to my radio interview

You may remember last week I gave a radio interview. It is airing in Asheville area tonight but you can already listen to it on the Brainshrub blog.

Children’s Medicine Blogging of the Week

Pediatric Grand Rounds Volume 1 Edition 21: What Dreams May Come…..now up on Unintelligent Design

Anthology update

Now that the Anthology is arriving at people’s homes, getting read and even reviewed on blogs, I hope that more people will take a minute to post reviews or ratings on the actual book webpage. In one week, it has moved from non-existent to 33rd to 27th on the Lulu.com top sellers of the week list. I am also working on having the book more widely available, e.g., on sites like amazon.com and in independent bookstores.

My picks from ScienceDaily

Fruit Flies And Global Warming: Some Like It Hot:

Researchers working in Australia have discovered ways in which fruit flies might react to extreme fluctuations in temperature. Short-term exposure to high heat stress (“heat hardening”) has been known to have negative effects on Drosophila. But Loeschcke and Hoffmann discovered that it can have advantages too. Flies exposed to heat hardening were much more able to find their way to bait on very hot days than were the flies that were exposed to cooler temperatures, but the heat hardened flies did poorly on cool days.

Beating Heart Muscle With Built-In Blood Supply Created From Stem Cells:

Researchers at the Technion-Israel Institute of Technology have created new heart muscle with its own blood supply using human embryonic stem cells. The researchers say the newly engineered muscle could replace cardiac tissue damaged in heart attacks. Their study was published online January 11 in the journal Circulation Research.

Complex Channels: Scientists Discover How Ion Channels Are Organized To Control Nerve Cell Communication:

The messages passed in a neuronal network can target something like 100 billion nerve cells in the brain alone. These, in turn communicate with millions of other cells and organs in the body. How, then, do whole cascades of events trigger responses that are highly specific, quick and precisely timed? A team at the Weizmann Institute of Science has now shed light on this mysterious mechanism. Their discovery could have important implications for the future development of drugs for epilepsy and other nervous system diseases. These findings were recently published in the journal Neuron.
The secret is in the control over electrical signals generated by cells. These signals depend on ion channels — membrane proteins found in excitable cells, such as nerve cells — that allow them to generate electrical signals, depending on whether the channels are opened or closed. Prof. Eitan Reuveny, together with Ph.D. students Inbal Riven and Shachar Iwanir of the Weizmann Institute’s Biological Chemistry Department, studied channels that work on potassium ions and are coupled to a protein called the G protein, which when activated, causes the channel to open. Opening the channel inhibits the conductance of electrical signals, a fact that might be relevant, for example, in the control of seizures.

Clock Quotes

Time cools, time clarifies; no mood can be maintained quite unaltered through the course of hours.
Mark Twain (1835 – 1910)

Meta-meta-blogging

Yes, I know, I’ve been guilty on occasion of this nasty navel-gazing practice myself, but I was never this funny or this funny. Links discovered by Bitch PhD who also indulges herself in some meta-blogging about 18th century blogging. So, this post is meta-meta-meta-blogging itself, isn’t it?

Gene?

In the series of “Basic Concept And Terms” (yup, I know, John is well known for misspelling people’s last names, including mine), several people have already chimed in with their own definitions of the “gene”, demonstrating how unclear this concept is and how much disagreement there is among the practitioners depending on the type of research they are doing (e.g, molecular biology, developmental biology, population genetics, evolution, etc.).
See how the term was defined and explained by PZ, Sandra and Greg so far and you’ll see those differences in emphasis.
Now Larry Moran joins the fray with one post on what a gene is not (though many erroneously cling to this definition) and one post on what a gene is, at least from Larry’s perspective. Good reading altogether.

I was tagged…

…by Matt. No celebrity is very much look-alike with me (and I included only male faces to eliminate Lindsay Lohan’s childhood picture):

http://www.myheritage.com

Everyone’s a Little Bit Jewish

Since I think that Fiddler on the Roof is the best musical ever, of course I totally loved this:

(Found here by Joolya)
I blogged somewhere before (I cannot find it now – darned Google and Technorati are imperfect!) that I think that, upon arriving in America, the fourth daughter married a black guy and the fifth daughter married a woman. I never expected one to marry a puppet!

Blogrolling – added today

Since Katrina…

Women in Science

She’s Such A Geek

Street Anatomy

Tangled Up In Blue Guy

Common Ills

Sasa Radojcic

KoBSON

I did not know more people tuned in than to American Idol…

…because I was not one of them. But now, thanks to Ed Cone, I know what the State of the Union address was all about.

I hope they come in chocolate glazed version

Perhaps it’s time for me to get serious about eating doughnuts!
(Hat tip: Greg)

Of course…

What Kind of Reader Are You?

Your Result: Obsessive-Compulsive Bookworm

You’re probably in the final stages of a Ph.D. or otherwise finding a way to make your living out of reading. You are one of the literati. Other people’s grammatical mistakes make you insane.

Dedicated Reader
Literate Good Citizen
Book Snob
Non-Reader
Fad Reader
What Kind of Reader Are You?
Create Your Own Quiz

(Hat-tip: Grrrrl)

Medical Imaging of the Week

Radiology Grand Rounds-VIII are up on Sumer’s Radiology Site

Clock Quotes

Life is something that happens when you can’t get to sleep.
Fran Lebowitz (1950 – )