Monthly Archives: January 2013

ScienceOnline2012 – interview with Simon Frantz

Every year I ask some of the attendees of the ScienceOnline conferences to tell me (and my readers) more about themselves, their careers, current projects and their views on the use of the Web in science, science education or science communication. So now we continue with the participants of ScienceOnline2012. See all the interviews in this series here.

Today my guest is Simon Frantz.

Welcome to A Blog Around The Clock. Would you, please, tell my readers a little bit more about yourself? Where are you coming from (both geographically and philosophically)? What is your background? Any scientific education?

I was born and grew up in a part of NW London best known for being the setting in Zadie Smith’s novels. No one in my family did anything in the sciences, but I was fortunate to grow up when series like Life on Earth and Cosmos first appeared on our TV screens. I had no idea that I was part of a privileged first generation that had the whole world and universe as our home, but it had an indelible effect on me.

I earned a degree in biochemistry, then spent around seven years in the lab researching the genetics of cardiovascular diseases. I won’t admit how long ago that was, but let’s just say I know how to do Maxam-Gilbert DNA sequencing.

Tell us a little more about your career trajectory so far: interesting projects past and present?

For several reasons, I realised that academia wasn’t the life for me. But I didn’t know what I wanted to do next. So, effectively I gave a year’s notice by choosing to work on a one-year grant instead of the three-year one that I was the named researcher on. I pretty much stumbled from there into journalism. I’d be lying if I said I always thought I had a talent for it, or wrote for the university magazine in my spare time, or enjoyed writing papers. A friend of a friend was starting up the UK version of WebMD, and wanted to hire someone with a science background who was willing to start at the bottom. Fortunately for me, this person hired a great team of experienced journalists and he was a great editor and teacher, kind and patient but ruthless with the red pen. I couldn’t have asked for a better learning experience.

Sadly, this didn’t last long. When the dot-com bubble burst in 2000, we all found ourselves out of a job. I ended up at Nature Publishing Group as a sub-editor for Nature Reviews Molecular Cell Biology, and a chance conversation with the editor of Nature Reviews Drug Discovery led to a move to launch their news section, which I ran for over 5 years. After that, I worked as web editor of The Scientist, and then as an editor on the Nobel Prize website, before landing at my current job as deputy editor of BBC Future, the science and technology website on BBC Worldwide that launched last February.

I’d love to say there’s been a master strategy behind my career trajectory, but the truth is that by and large it’s been a series of happy accidents. All I can advise is: make your own luck, work your butt off; work with people you admire and who are better than you; constantly challenge yourself; realise that your last piece is not going to write the next one for you, as John McPhee said, and that no one owes you anything, no matter how long you have been in this game.

What is taking up the most of your time and passion these days? What are your goals?

BBC Future is taking up all of my time at the moment, but thankfully it’s a hugely enjoyable way to spend my time.

We launched the site in response to audience feedback; people said they wanted science and technology content that took a deeper dive at subjects that weren’t in the news, and they wanted it done in a “BBC way”. Almost everything we’ve seen within our first year suggests that there is an active appetite for this type of content. So, our current goals are to create more, and more varied, content that satisfies this appetite – for instance, we’re just launched a video series made by BBC Earth, and we have more video series in the pipeline.

What makes this such a joy is having a roster of great writers, including many past and present Science Onliners like Emily Anthes, Sam Arbesman, Cathy Clabby, Rose Eveleth, Jason Goldman, Maria Konnikova, Christopher Mims, Kelly Oakes, Jennifer Ouellette and Ed Yong. Another goal is to add more Science Onliners to this list.

What aspect of science communication and/or particular use of the Web in science interests you the most?

Almost everything that’s going on is interesting – we’re in this amazing, if somewhat unsettling, time in which there’s never been a better moment to experiment. There are two particular areas of interest that relate to what were trying to do at BBC Future. One is explanatory journalism. We have writers like Ed Yong, Claudia Hammond and Tom Stafford writing great articles that explain and add context to scientific and medical topics. The next step for us is to find ways of covering more areas, cover them in different and compelling ways, and get more writers to try their hand at this form of journalism.

The second aspect is the growing popularity of longform content online. I’m not keen on the phrase “longform”, and there’s no general agreement as to its definition, other than “content that isn’t short”. Definition aside, it’s great to see the adage that shorter is better online being confounded. Apps like Instapaper and Pocket have made it easier for people to find and save articles, and websites like Longform.org, Byliner and Electric Typewriter are great repositories for classic and new articles. IMHO, The Atavist stands head and shoulders above the general longform pack in terms of the quality and sheer inventiveness of what they’re producing (if you haven’t read David Dobbs’s and Deborah Blum’s articles, I urge you to do so).

I think that this format is tailor-made for science and tech stories – from an editorial perspective I think there is fertile ground for articles that are longer than Nature/SciAm/etc features but shorter than a popular science book. (I think several popsci books would be better served in a 20-30k-word feature format, but that’s another argument.) I still have some reservations about sustainable business models for longform content in specialised areas, but it’s great to see people behind projects like Matter and Aeon experimenting with this genre and creating fantastic stories in the process – Ross Anderson’s article on bristlecone pines and Cynthia Graber’s profile of a modern-day Frankenstein being just two examples of must-read articles. We’re exploring this area in a somewhat more traditional way; for instance, we’ve just published an account of three science writers who became biohackers. We are keen to do more of this, and if possible help to promote other outlets that want to publish similar content.

When and how did you first discover science blogs? What are some of your favourites? Have you discovered any cool science blogs by the participants at the Conference?

I discovered health blogs first, while I was at Nature Reviews Drug Discovery. Derek Lowe’s blog In The Pipeline was the one that first caught my eye, it still remains an exemplar of what a blog can be: insightful, opinionated and witty. Science blogs appeared on my radar later, around the time that Seed launched its blogs. My list of favourites are far too numerous to name, many of which I learned about at Science Online, but that only highlights how much the area has evolved. Five years ago, my RSS feed was filled mainly with news channels. Now it’s filled with blogs.

How does (if it does) blogging figure in your work? How about social networks, e.g., Twitter, Google Plus and Facebook? Do you find all this online activity to be a net positive (or even a necessity) in what you do?

We don’t publish blogs at the moment, though you could argue that our columns are a form of blog – the writer’s voice is as important to us as what they choose to write about. My opinion on who should write for us is anyone who cares about a subject and wants to tell the story in the most compelling way – be they a BBC stalwart for decades or a person just entering the world of blogging. So awareness of all the great blogs out there is an important part of my job, as are networks like Twitter and Facebook. When you aren’t part of the news cycle, social recommendation becomes important in terms of raising awareness of your content.

What was the best aspect of ScienceOnline2012 for you? Any suggestions for the next year? Is there anything that happened at this Conference – a session, something someone said or did or wrote – that will change the way you think about science communication, or something that you will take with you to your job, blog-reading and blog-writing?

The evening before the conference began summed up everything that I value about the conference. The hotel bar was full of people meeting and laughing: whether it was old friends and colleagues, online friends or people meeting for the first time. There were no name badges and therefore no hierarchies; experienced heads were talking to any newbies who were willing to introduce themselves.

I’ve been to two Science Onlines and the overwhelming feeling I’ve had from both is how much I have to learn. I love the idea that I can sit next to someone on the bus, or stand next to them in the queue, and they can blow my mind about their research, or make me intensely jealous about their site, or even help me control my email inbox better (thank you Walter Jessen!). And I love the spirit in which this is done, we all want to do what we do better, and people discuss this without any airs or graces, irrespective of their level of experience.

The other aspect I appreciated most is the effort that you, Anton, Karyn and everyone else put in to make sure that every detail is covered, from the wi-fi to the quality of the coffee in the mornings. On these details, great conferences and experiences are made.

Thank you so much…and see you tomorrow!

Commenting threads: good, bad, or not at all.

Proposed alternative title: “This post is not about climate change”

Yes, we've all been there....

Yes, we've all been there....

A couple of weeks ago, an article was published in Science about online science communication (nothing new there, really, that we have not known for a decade, but academia is slow to catch up). But what was interesting in it, and what everyone else jumped on, was a brief mention of a conference presentation that will be published soon in a journal. It is about the effect of the tone of comments on the response of other readers to the article on which the comments appear.

I have contacted the authors and have received and read a draft of that paper. Since it is not published yet, I will not break all sorts of embargoes by going into details, but can re-state what is already out there. An article about nanotechnology, a topic most people know very little about and usually have no a priori biases for or against, was presented to the test subjects. Half the people saw the article with (invented) polite, civil and constructive comments. The other half was given the same article but with uncivil comments – essentially a flame-war in the fake commenting thread. The result is that readers of the second version quickly developed affinity for one side of the argument and strongly took that side, which affected the way they understood and trusted the original article (text of which was unaltered). The nasty comment thread polarized the opinion of readers, leading them to misunderstand the original article.

The assumption is that on hot topics, like climate change, readers already come to the article with pre-concieved notions, and thus the civility of the comments would have no effect on them – they are already polarized. Choosing nanotechnology as a topic was a way to see how comments affect “virgin minds”, i.e., how the tone of comments starts the process of polarization in new readers.

They specifically chose a topic about which most people know very little and do not already have any opinion. Neither the article nor the comments contain sufficient information to turn the readers into experts on the subject. So they have to use mental heuristics – shortcuts – to decide what to think about this new subject. Uncivil, aggressive comments resulted in quick polarization. Readers, although still not well informed about the topic, quickly adopted strong opinions about it.

1-9-90 rule

As many of you may already know, there is this thing called a 1-9-90 rule of online participation. In any given online community, about 1% of the participants produce most of the content, another 9% participate regularly by editing (e.g., on a wiki), commenting (on blogs and articles), occasionally producing new content (in forums, etc), and the remaining 90% are ‘lurkers’ who do not publicly participate but only read (though these days, many of them participate a little more publicly, if not creatively, by “Liking”, tweeting, and otherwise sharing the content in ways that are visible to others, but without adding any thoughts of their own). The exact proportions vary from site to site, but are usually close enough to 1-9-90 for the general rule to hold.

For sites like this one – a media organization and a blog network – the 1% are pre-ordained: our editors, staff, freelancers, network bloggers and guest bloggers. In other word, they are selected, not self-selected, and many of them can do it only once or very rarely. The 9% are active commenters, and the 90% read and perhaps share, but never say anything on the site itself.

Where are the comments?

Many people have noticed that the quantity of commenting, especially on blogs, has sharply decreased over the last couple of years. One reason is that discussion of the article or a post is now happening elsewhere – on social media (Twitter, Facebook, Google Plus…) or online communities (Reddit, Digg, Fark, Slashdot…), and are not physically attached to the original post. The trackback functionality is disabled on many sites due to enormous amount of spam.

Some new commenting systems are trying to re-attach such detached discussions back to the original post, but that is still not completely technically feasible – one can certainly not bring in a conversation happening on someone’s private Facebook wall. Some of those 9% of readers, instead of commenting on the post (at least a brief “Nice post, thank you”) are now sharing the link elsewhere and perhaps discussing it elsewhere, without the author of the original article ever being able to see that discussion.

Instead of “silent” participation leading gradually to more active participation as one becomes more comfortable with the site, it seems the opposite is happening: mildly active users are now becoming silent users as it is easier to click “Share on Facebook” than to post a brief comment.

But there is another problem here – most of the good, nice, constructive commenters may have gone silent and taken their discussions of your blog elsewhere, but the remaining few commenters are essentially trolls.

The question every blogger in this situation has to ask is – what to do next?

One option is to give up on comments entirely, and perhaps completely shut down the commenting functionality, trying, at the same time, to find and track discussions wherever they may be happening. A veteran blogger, Dan Conover just did that – go read his explanation why.

Commenting is not an essential element of blogging. Some of the most popular blogs never had comments, e.g., Andrew Sullivan’s The Dish, Josh Marshall’s Talking Points Memo (though his site has plenty of other spaces for the community to be active), or John Hawks’ blog. They always got plenty of reader feedback via email, and now also get it via social media where all of them are quite active.

Another option is to do some serious and time-consuming work on building the commenting community and motivating readers to post comments. It is much harder now than is used to be. And the presence of those few remaining comments – most of them vile and nasty – does not motivate serious people to add constructive comments into a cesspool of primitive discourse. Which brings us to the topic of…

Comment moderation

What does it mean to moderate comments? Different people have different ideas about it, but many focus on technical fixes.

Spam filters – most spam filters already come pre-programmed to eliminate specific types of spam, e.g, those that contain words like Rollex, Vuiton, Viagra, Texas hold-em (unfortunately, sometimes just “Texas”) as well as various XXX words. Some spam filters allow the blogger to manually add or remove terms that trigger the spam filter. Other blogging software allows one to “teach” the spam filters over time, by sending comments to Spam, or by rescuing valid comments out of the spam folder.

Pre-comment moderation – in which the blogger sets up the software to send email notification each time there is an attempt at commenting. The blogger then goes to the dashboard, reads the comment and makes a decision: to set the comment live, to trash it, or to ‘teach’ the spam filter by sending the comment to Spam.

Post-comment moderation – in which all comments initially go live, but the blogger is generally online a lot, gets email notifications about each posted comment, and can quickly react and, if necessary, delete or spam the offensive comment. In some cases, the first time someone comments, their comment is held in moderation, but if the comment is approved, subsequent comments go through automatically.

Sophisticated graded moderation – some sites have been experimenting with more complex commenting systems which allow for, e.g., upgrading and downgrading comments (so upgraded comments get moved up to the top, while downgraded comments may become invisible); or letting valued commenters earn badges and special privileges over time, so their comments may show up on top, perhaps in different color, or with different types of signs or avatars; or allowing users to report inappropriate comments to the moderators. Other sites are starting to experiment with annotations in place of comments. Also see Dave Winer who separates main blog from comments – he requires an additional click or two to comment. I find this an interesting strategy, to make it harder to comment, thus filters in only who have something to say, and are motivated to do so, perhaps because they have been reading Dave for a decade and consider him a friend. Other bloggers may have the opposite problem – too few comments, so they want to make commenting easier in order to get comments, but then they are likely to get trolls first.

Modifying comments – leaving the inappropriate comments on site, but altering them in ways that makes them much harder to read, or making the commenter look silly, e.g, by inserting a picture of a bunny rabbit, or disemvoweling or using the Kitten Setting. The lightest ‘touch’ is to leave the comment as it is, but remove a link contained in the comment if it leads to a site you do not want to send traffic to. And yes, all of this is completely legal, and a very good strategy.

Engagement – the most important element of comment moderation is the presence of the author in the commenting thread. Responding to readers’ comments, thus showing that they are being read, observed and appreciated, is the most effective way to make sure that the discussions stay on topic and do not veer over the line of appropriateness. Sometimes a comment hurts, or makes you angry. Sleep over it. Then come up with a smart, witty, civil and firm response. Be in control of your own commenting threads:

So, why are so many comment threads so nasty?

Because they are not moderated! At all! In ALL of the senses listed just above. If commenters think your commenting thread is a public space where they can do whatever they want because nobody’s watching, they will do whatever they want. And that is not pretty. And then the potentially constructive comments never get posted, because normal people do not want to waste their time thinking and writing comments that will just get flamed.

If you don’t delete or disemvowel inappropriate comments, people will think you are not even reading the comment threads. If you don’t show up in person, nobody will know you are even interested in their thoughts. If you don’t delete the trolls, the trolls will take over and the nice people will go somewhere else.

Early online discussion spaces, e.g., newsgroups, were largely unmoderated affairs (with some exceptions). It was a Wild, Wild West. When first blogs appeared, the spirit of free speech permeated the early online discussions – bloggers felt they should let everyone have their say, because their blogs were rare spaces where people could do that.

Then traditional media got into the game and started allowing comments on their articles. And that is where everything broke down. Due to a grave misunderstanding of an old court case by the legal departments (I really, really hate to use nasty words like “idiotic”, but my Thesaurus has come up empty with suggestions for apt synonyms) at some media organizations – which then spread to all of them – newspapers decided not to moderate their comments at all! Not using any of the methods listed above. Actively preventing authors and editors from deleting, editing or responding to comments! Really! What did they expect to happen – intellectual treatises occurring on their own in each comment? Perhaps they thought the comments would be just like Letters to the Editor, but already edited, chosen and filtered automatically before they even arrive?

Yes, all methods of comment moderation are perfectly legal and don’t let any media lawyer tell you otherwise – they keep getting it wrong.

Free Speech is a very American concept. Most of the other 200 nations on the planet do not provide constitutional protection of free speech. And Internet is global.

And even within the USA, the concept of free speech does not mean everyone has the right to say everything everywhere. It does not mean you have the right to say your stuff on my blog. It means you have the right to start your own blog. Just because I have commenting functionality on my site, does not mean you have the right to post whatever you want on it. Every host of every site has the right to delete, edit, or modify any comment in any way, to ban users, and to implement whatever moderation norms and techniques one wants.

Commenting is a privilege, not a right. You have to earn it.

While early bloggers were generous, giving their rare online spaces up to public discussion, there is no need to feel so generous any more. Starting one’s own blog is easy these days, and ranting on social media is even easier. There is plenty of space for people to discuss stuff, and that does not have to happen on your site – the era of such generosity is mostly over, and most veteran bloggers have severely tightened their commenting rules over the years.

And yes, some blogs are still rich with vibrant commenting communities – e.g., Atrios, Pharyngula, etc. They have people there who talk to each other every day, often ignoring the topic of the actual post. And then mega-blogs, like DailyKos, are a completely different animal, where community provides most of the content, in form of diaries (as well as lots of comments).

My blog is my living room in my home. I set the rules. I determine the tone. I determine the topic of conversation. When you post a comment on my site, you agree to abide by my rules, you stick to the topics I determined, and you keep the tone I deem OK to be used in my home (imagine reading out loud your comment in front of my wife, mother and kids). I have the right to warn you and to kick you out of my home – it’s my party, after all. You have no right to be here, no right to say anything – it is up to me to welcome you here, and up to you to ensure you are welcomed.

Another way to think of your blog (which I heard from Anton Zuiker) might be as a classroom where you are the teacher. It is important to keep control if you want to facilitate a constructive discussion. Unless you are willing to use your time and energy to keep control and engage in the discussion yourself, you may be better off not having comments at all.

If I delete your comment, it is not censorship (and if you cry “censorship” I will laugh out loud). You are free to start your own blog and start working on increasing its Google Rank so it becomes visible in searches. It takes time and effort, but I will not lend my Google Rank to you to use for your blatherings. Do the work yourself.

And if you are a blogger, and your comment threads are nasty, you have only yourself to blame.

In this comment on a recent post of mine, I was commended for having a good, vigorous, constructive discussion. How did I manage to do it? By swiftly deleting about a dozen trolling comments as soon as they were posted. If I did not do that, half of the good comments would not have been posted as their authors would not have bothered. The discussion would have veered off-topic onto some silly tangent, and trolls would have taken over.

And it is not about blocking every opinion that is different from mine. Obviously, some of the commenters disagreed with me on the content and conclusions of my post. And there are a couple of comments there by obvious climate dieniers that I left standing because they were on-topic and civil in tone, despite me not agreeing with them one bit. It is not about censorship, it is about tending the garden of one’s commenting threads, by nurturing the good flowers and removing the weeds.

“You are entitled to your own opinion, but you are not entitled to your own facts.” – Daniel Patrick Moynihan

Different websites and blogs have different goals. This one, see the banner above, has the word “Scientific” in it. This means something. This means that the discussions are about science and about the way science and society interact. This also means that the content of our site tries to present factual information about the world, as best discerned from scientific data.

This magazine is 167 years old. The magazine and its website and blogs often cover the latest studies that add just a new twist to an old, established body of work. Some articles summarize larger, established bodies of work.

Early in the magazine’s history, during its first couple of decades of existence, it was established that biological evolution is a fact. Since then, we cover, daily, new twists and turns in details of exact mechanisms of how evolution works, or about its results, e.g., discoveries of new fossils or new living species. But the fact of evolution is long established. Thus, almost none of our articles discuss this fact. Thus, a constructive comment thread on any of those news articles would involve discussions of those fine points of mechanism, or details of the new finding. A comment thread that debates the fact of evolution is off-topic. It is not “vigorous debate”, it is a comment thread hijacked by creationist trolls. They are entitled to their beliefs and opinions, but they are not entitled to their facts. Evolution is a fact. Questioning the fact of evolution is not a part of discussion of a particular new finding or mechanism. There are other online forums that discuss that – this is not one of them. Thus, such comments are trolling, and need to be deleted so people who do have a scientific mindset have a free and welcoming forum to discuss the details of the study described in the article.

The same goes for climate change. It is a fact that global warming is true. And it is also a well established fact that humans played a big role in it. And the notion that if we broke it we should fix it is what responsible humans do. Thus, an article about a new study about climate or weather or energy or infrastructure is not a proper forum for debating the well-established facts. There is no debate there. Thus, such comments need to be deleted.

Now let’s go back to the very beginning of this post and the forthcoming article about the effect the tone of comments affects readers. If we leave the creationist or denialist troll comments up, what does it do to the rest of the readers? It polarizes them, it makes them more certain about things than what their actual knowledge warrants, while at the same time repelling experts from wading into the mud-pool to correct, over and over again, the untrue statements and anti-facts posted by denialist trolls.

How do you decide what is a trolling comment?

The first definition of trolling is ‘posting comments in order to derail the discussion’, to take it away from the topic of the original article and onto a topic the commenter wants to discuss – his/her own pet peeve.

If you want your comment threads to remain clean and civil, and to stick to the topic in the article, you HAVE to delete off-topic comments.

So, if I write about a wonderful dinner I had last night, and somewhere in there mention that one of the ingredients was a GMO product, but hey, it was tasty, then a comment blasting GMOs is trolling. Any comment that contains the word “Monsanto” instantly flies into the spam folder.

If I write about a wonderful weekend mountain trek, and note I saw some flowers blooming earlier than they used to bloom years ago, then a comment denying climate change is trolling. I am a biologist, so I don’t write specifically about climate science as I do not feel I am expert enough for that. So, I am gradually teaching my spam filter to automatically send to spam any and every comment that contains the words “warmist”, “alarmist”, “Al Gore” or a link to Watts. A comment that contains any of those is, by definition, not posted in good faith. By definition, it does not provide additional information relevant to the post. By definition, it is off-topic. By definition, it contains erroneous information. By definition, it is ideologically motivated, thus not scientific. By definition, it is polarizing to the silent audience. It will go to spam as fast I can make it happen.

For a science site, every comment that insert non-scientific, anti-scientific, nonsensical, ideologically or religiously motivated anti-facts, is by definition not just trolling, but spam. Like online Viagra sales. Literally! There is more and more evidence that a small subset of trolling posts (e.g., those aggressively promoting climate denialism) may be paid for by astroturf organizations funded by some vested interest groups. By peppering every article and post that can remotely have anything to do with their topic of choice, they provide an illusion that their pet movement is bigger than it really is, or that support for their position is more widespread than it really is (which then, if it works, results in the actual rise in the support for their anti-science positions). This then encourages the others (after they got persuaded quickly, without having their own sufficient knowledge, as the nanotechnology paper showed) to keep posting additional comments for free. The first troll comments are supposed to be seeds for more trolling. Which is why it is essential to cut them at the root. You do not want to provide a free platform for a paid political operation.

I am certainly not using cowardly, mealy-mouthed He-Said-She-Said mode of writing my own posts, so I will also not allow for a He-Said-She-Said pseudo-debate to develop in my comment threads. You don’t like it? Deal with it. Go and complain in the comments on Watts’ posts, or on your Facebook wall.

And the idea that deleting inappropriate comments reinforces the formation of “echo-chambers” is a complete myth. Plenty of different opinions are out there, many more of them much more easily available than before the Web. The commenting threads are not a place to showcase the whole spectrum of opinions, no matter how outrageous some of them are, but to educate your readers, and to, in turn, get educated by your readers who always know something you don’t.

My own moderation rules

You are reading this on my own, personal blog. I know, the distinction is fuzzy. The blog is hosted on Scientific American, and I am an editor at Scientific American, thus this blog is in some way a public face of the organization. But writing this blog (or even hosting it on this site) is specifically not included in my contract and in my job description. This remains my own, personal blog. I host it here because it makes sense to me – it is easy (I am here all the time anyway), it feels natural, and it provides me a greater visibility than if I self-hosted it elsewhere.

Now, I am aware I represent the organization in public. Thus, I am very careful that everything that goes up on this blog is following the range of topics and the discourse standards of SciAm. If I think something I have to say does not really fit here, I post it on my Twitter or Facebook or Google Plus or Tumblr. And even there I am aware that I am still seen as a public face of SciAm so I am careful what kind of language I use, how I behave, etc. Deleting trolls, and not providing a platform for anti-science ideas, is good behavior for a scientist, a science writer, and an editor at Scientific American. It demonstrates I care for the truth.

If I want to say something that does not fit my public role as an editor, and if we cannot meet in person or chat on the phone, I will send you an email. I treat email as the last remaining channel for private, confidential communication, so if I tell you something in an email, it is between you and me, and not to be shared with others.

So here, on my personal blog, I like NOT to have pre-written Moderation Rules. Sure, I can be capricious, which keeps commenters on edge. But, really, I am putting a lot of thought into comment moderation, and I think carefully about each comment. I make decisions on a case-by-case basis. What is my post about? The same comment may be appropriate on one post and not on another.

Blasting in here with “Al Gore!” makes it easy for me to decide – you are not coming here to do anything but start a flame war and perhaps get a rise out of me. Perhaps you are paid-per-comment (or you were duped into doing it for free). Your comment is going straight to spam. A few more times, and I’ll ban you (and as there is no way to ban a commenter from just one blog, I’ll ban you site-wide, after consulting with colleagues, something I did only a couple of times in the last two years – I am careful, and do not ban easily, though there are dozens of other regulars who are under my careful watch and coming dangerously close to getting banned, which is fine, as that opens the field for better commenters to take their place).

But if you come in with strong language, or ideas that are not constructive, but I detect that you are just uninformed about my commenting standards (perhaps you just arrived from YouTube or DailyMail or 4chan), I will welcome you in a comment, explain that my kids are watching (so mind your language), and explain my “three strikes and you’re out” rule I sometimes employ on commenters like that. The commenters who get greeted that way either disappear forever, or they make the three strikes so get banned, or they tone it down and become regular, productive members of my commenting community (even though some of the same people may have been banned from many other science blogs).

I also have moderation powers on several other spots on the site, e.g., on Guest Blog, Expeditions, The SA Incubator, The Network Central and if I post myself on some of the other spots (Observations, @Scientific American, or on the main site). I employ pretty much the same rules there, though I am even more careful, and put even more thought into each comment. I especially want to protect our guest bloggers – some of whom are academics and not used to rowdy online behavior – from at least the worst core of our regular trolls.

The rest of the bloggers on the network employ their own rules, use their own judgement. Some pre-moderate, some post-moderate, some are very strict, some are very lenient. And we do not (yet) have more sophisticated commenting tools here. Especially female bloggers often have little choice but to be strict in their moderation, as the Web seems to bring out the nastiest mysogynists in droves.

I do not moderate the rest of the site – articles or posts written or edited by other SciAm staff are moderated by them.

Now, I know that I used the example of Global Warming Denialism here the most – mainly because it is currently the most acute problem on our site – but the same goes for people harboring other anti-scientific ideas: creationists, anti-vaxxers, knee-jerk anti-GMO activists, and others.

This post is not about climate denial, it is about commenting and comment moderation. It is about the fact that eliminating trolls opens the commenting threads to more reasonable people who can actually provide constructive comments, thus starting the build-up of your own vigorous commenting community.

There are seven billion people on the planet, many of them potentially useful commenters on your site. Don’t scare them away by keeping a dozen trolls around – you can live without those, they are replaceable.

Thus, on this post, comments about climate will be deleted.

Image Source.

ScienceOnline2012 – interview with Sarah Webb

Every year I ask some of the attendees of the ScienceOnline conferences to tell me (and my readers) more about themselves, their careers, current projects and their views on the use of the Web in science, science education or science communication. So now we continue with the participants of ScienceOnline2012. See all the interviews in this series here.

Today my guest is Sarah Webb.

Welcome to A Blog Around The Clock. Would you, please, tell my readers a little bit more about yourself? Where are you coming from (both geographically and philosophically)? What is your background? Any scientific education?

I’m a science journalist, but I came to science writing and journalism about 10 years ago while I was a chemistry Ph.D. student at Indiana University. Though I finished, I went straight into journalism internships after I defended my Ph.D.– at Discover magazine and as a AAAS Mass Media Fellow at WNBC-TV. I stayed in the New York City area for 8 years until my husband and I moved to Chattanooga, Tennessee last August.

Tell us a little more about your career trajectory so far: interesting projects past and present?

My brain has always been split between science and the humanities. In college, I double-majored in German and chemistry. I did a Fulbright fellowship in an organic chemistry lab in Giessen, Germany before I started my Ph.D. work.

When I decided to move away from research, I first explored science writing through a master’s level journalism course taught by Holly Stocking in the Indiana University School of Journalism. She pretty much hooked me on science journalism from day one. At the same time I was volunteering at a local hands-on science museum, WonderLab, so I’ve had my hands in informal science education, too.

After my Ph.D. defense and internships in New York, I took on various types of freelance work. One of my favorite projects was working with a team at the graphic design firm C&G Partners in Manhattan on the permanent astronomy exhibits at Griffith Observatory in Los Angeles. I worked as a content developer, gathering images, objects and research information for the exhibit writer. All my skills– my science background, my research skills and the ability to call scientists up on the phone to ask about their work– played into that project.

Since that work wrapped up in 2006, I’ve worked as a freelance science journalist, writer and editor.

What is taking up the most of your time and passion these days? What are your goals?

My big project lately has been a book and website with more than 30 close friends and colleagues. The Science Writers’ Handbook: Everything You Need to Know to Pitch, Publish and Prosper in the Digital Age will be published by Da Capo Press in April 2013. I contributed one chapter on “The Diversity of Science Writing,” how to build a balanced mix of work both inside and outside of traditional science journalism. I am also the editor in chief of our book’s newly launched blog and website. (Emily Gertz and I will be giving a BlitzTalk about the site at ScienceOnline 2013).

Like many freelance journalists, I keep my hands in many different projects. I spend the bulk of my time writing news and feature articles for journals and trade publications. But I have written about science for a variety of kids’ publications, and I have written for many general interest science magazines including Discover, Science News, and ScientificAmerican.com

In terms of goals, I really want to spread my wings into more narrative writing– longer magazine pieces or even, potentially, a book of my own.

How does (if it does) blogging figure in your work? How about social networks, e.g., Twitter, Google Plus and Facebook? Do you find all this online activity to be a net positive (or even a necessity) in what you do?

I started my own blog 4 years ago. It’s an independent blog, Webb of Science, that has become my primary digital calling card and a way for me to introduce myself to readers, sources and the world at large. In setting up the website for The Science Writers’ Handbook, I’m more of a project manager and editor, but I’m posting there, too.

Twitter is my primary social network for work. Facebook, for me, tends to be more about connecting with friends from all parts of my life. One of my goals this year is to build an active Google+ presence. I think social networks are increasingly important (if not essential!). Time management is always tricky, but it’s worth the investment.

Thank you. See you next week!

ScienceOnline – crossing a river with Anton Zuiker

I have been conducting these ScienceOnline interviews for years now, and somehow I never got to interviewing you – one of the founders! It’s high time, don’t you think? So, without further ado, welcome to A Blog Around The Clock. Would you, please, tell my readers a little bit more about yourself? Where are you coming from (both geographically and philosophically)? What is your background? How did you get into medical journalism?

Thank you, Bora. Like you, my last name starts with a Z, so I’m used to waiting for everyone to be called to the front of the classroom to speak. I think that that was one of the early experiences that taught me to pay attention to others. So, it’s been a pleasure to read your interviews through the years and to admire all the unique individuals who have been drawn to ScienceOnline. You’ve done an amazing thing in asking them to share a bit about their lives. The Web — the world — is a better place when we can stop to listen to each person’s story.

I live in Carrboro, North Carolina. I came here 12 years ago, and before that the longest I’d lived in one place was five years as a boy in Idaho. I’ve also lived in Ohio, the South Pacific, Hawaii, Illinois, U.S. Virgin Islands, Arizona, Minnesota and California. I’m the oldest of five sons. My father was a Peace Corps Volunteer (1965-67, Dominican Republic) and coordinator for the VISTA program, then became an attorney. My mother was a parochial-school teacher and principal. In 1981, my parents were watching the nightly news when the television sparked and died. They put it in the closet and never got another, probably the most important parenting decision in my life. I’m a voracious reader because of them. On St. Croix, the house we rented had stacks and stacks of National Geographic, and I set my mind to becoming editor of that journal. Inspired by the photos, I joined the eighth-grade photography club to learn to develop my own pictures.

My high school years were spent in DeKalb, Illinois, my mother’s hometown. I played varsity soccer, was elected student body president, edited an award-winning literary journal, worked summers detasseling hybrid seed corn and walking soybean fields, and with a couple of friends formed a juggling troupe named for the 18th-century Swiss scientist Daniel Bernoulli (our terrific physics teacher suggested that). My dad regularly took me and my brothers into Chicago to visit the Museum of Science and Industry and to see the Blackhawks and White Sox and Cubs (he taught me how to keep the box score, and always have hope), and his stories about being a hard-working vendor — ‘Beer, here!’ — were often more interesting than the games we’d come to see. Dad also taught me to think about the consequences of my actions, and to keep a record of my activities. My mother encouraged me to make new friends and to persevere when my math homework brought me to tears.

When I entered college at John Carroll University in suburban Cleveland, I knew I wanted to be a journalist and to live a life of service, including following in my father’s footsteps and joining the Peace Corps. I also thought long and hard about becoming a Franciscan friar, but decided to become a different kind of father. I fell in love, but moved to Hawaii, where I got to interview astronomer Jerry Nelson in the Keck Observatory. Eventually, I returned to Cleveland, married Erin, and worked as an arts magazine editor. Together we joined the Peace Corps and went to the Republic of Vanuatu, later returning to the U.S. via Australia, Asia and Europe.

So, geographically, I’ve been around. Around the world, quite literally. And philosophically, I’ve learned to be open to that world and its possibilities. My parents taught me to make the best of each and every situation, and how to talk with people to find our similarities and marvel in our differences.

Tell us a little more about your career trajectory so far: interesting projects past and present? And future?

You’re probably still wondering how I got into medical journalism. That came out of my time in Vanuatu. Erin and I both got giardiasis and dengue, and she also got vivax malaria. We saw Hansen’s disease and filariasis and malnutrition and ciguatera poisoning. In the heat of the tropical days, I swayed in the hammock reading the Control of Communicable Diseases manual. When later we moved to North Carolina for Erin to get her masters of public health, I learned about the science and medical journalism program at the UNC j-school, and studied under Tom Linden. I was taking Epidemiology of Infectious Diseases when SARS broke out, and one of the class instructors happened to be Ralph Baric, a coronavirus expert. By now, I knew I was never going to be editor of National Geographic, so instead I was aiming for the New Yorker: my masters thesis project was a 12,000-word narrative feature about acute HIV among college students.

An important thrust to my career trajectory, though, also came from my time in the Peace Corps. That was in the late 90s, and I recognized that when I was done on my island with no running water and no electricity, my childhood dream of being in print would have to change with the World Wide Web. I got a job at an Internet startup company in January 2000, just in time to watch the tech bubble burst from the inside. But I created my first website, became a blogger, and never looked back.

Over the last decade, you and so many other friends and colleagues have helped me combine my passions for journalism, community development and connecting on the Web. We call this the BlogTogether spirit — supporting individuals as they connect through social networks, and then creating ways for them to come together for face-to-face conversations. Those conversations, we’ve seen, promote the golden rule: blog about others as you’d have others blog about you. (I didn’t become a priest, but I’ve found my mission, you could say — or sing, as David Kroll did in Minister of Ether.)

I’m not going to be editor of National Geographic. I may never get into the pages of the New Yorker. But I do hope my career keeps me involved in supporting thoughtful observations about our world.

What is taking up the most of your time and passion these days? What are your goals?

I have a great job, as communications director for the Duke University Department of Medicine. It’s in a vibrant academic medical center, and we use a blog to reflect the activities of our faculty and trainees, such as Nobel laureate Robert Lefkowitz. I was in his office a while back, and loved hearing him talk about how science and humor are alike in helping us see connections.

I recently figured out an important connection in my own life. My paternal grandfather, Louis Sisco, organized the annual Sisco Picnic, and I often helped him set up for that. His devotion to gathering the extended family, and his attention to the details in planning the event, rubbed off on me. I’m pretty sure that’s one of the reasons I’ve spent the last 10 years organizing events and meetups, from the Narratives of HIV series to BlogTogether Backyard Barbecues to our shared ScienceOnline conferences. This year, though, I’m taking a break from organizing events. ScienceOnline has become an official organization, and Karyn Traphagen is charging ahead with great momentum and ideas – hers is a detail-oriented mind that my grandfather would admire. I now serve ScienceOnline, Karyn and the rest of our community as chairman of the board, and I will focus on that role. I’m excited to see where this all goes.

Not having to sweat the details of the conference means I have more time to write, and so I’m more actively writing on my blog. I’ve learned that the more I write on my blog and in my personal journal, the more balanced I am. That’s helping me to spend more time with my daughters, who need me to encourage them through their math homework, and two-year-old Oliver, who needs me to explore in the woods with him just like my dad did when I was young.

I’m in my forties now, and spending this decade learning to be a better storyteller. I love to hear great stories at the Monti, and Jeff Polish inspired me to convene the Talk Story narrative variety show. Karyn showed us postcards she wrote to her mother, and my friend Carter Kersh has gone on to tell two stories at The Monti, for which he’s been nominated for the Hippo Awards. I’ve stumbled through a few of my own stories. I may never be a great storyteller, but I do know that I’m becoming an even better listener. If my gift in life is to facilitate conversations and help other people share their stories, then I’ll continue to do that as humbly as I can.

Through my writing, my listening, my living, I’m trying to be ever more thoughtful, kind, patient and passionate.

You once described your life philosophy as crossing-a-river. What does that mean and how does it work?

I’ve spent a lot of time at the edge of the water – watching contemplatively as mountain rivers cascade, or expectantly as ponds begin to freeze over, or contentedly as the sun sets over oceans and seas in which I’ve just surfed or snorkeled or paddled. As my family moved around, and my parents taught me to find opportunity in each new place, I came to see my life as a journey across a wide river strewn with stepping stones, each stone offering new possibilities for forward or lateral movement toward that other river bank. Some steps are shorter and seemingly less memorable, others further and riskier. I’m certain I’ve fallen in a few times – the story I’ve told my daughters the most is the one about rafting on the New River, tumbling over and losing my favorite Greek fisherman’s cap – but I’m also sure that each moment has strengthened and deepened.

(As I’m writing this, sitting in 3CUPS sipping keemun hao ya, there’s a young guy at the next table over, strumming an ukulele. That makes me remember meeting the gentle giant Israel Kamakawiwoole and Big Island lutier David Gomes. Part of the allure of my crossing-a-river metaphor is the joy in looking back at the steps I’ve taken and the people I’ve met along the way.)

When I graduated from college and decided to move to Hawaii — away from the woman I dearly loved — a mentor told me something simple and profound. “Anton, if it doesn’t work out, you can always come back.” I took it to mean that I need never feel trapped, or choiceless. After two great years in Honolulu, I did return to Cleveland as Erin was finishing college. Ever since, she’s been my companion on that river crossing.

You have been blogging for a very long time, you are one of the pioneers of the form, and you have helped many other people start their own blogs. How do you see the evolution of the blogging form in the near future, both regarding your own blog, science blogs, and blogging in general?

As I used to explain in our Bloggging 101 tutorials, blogging developed in some of the same ways as the early Internet, from What’s New pages to filtering lists to personal-perspective journals. After all these years, blogs can be any or all of these types of online writing.

Social media networks such as Twitter and Facebook and YouTube and Flickr and Instagram have given us tools to share short messages and photos and videos. It feels to me that blogs posts have lengthened (you’re the outlier, of course!), and are more essay like. Last fall, we held the Back to the Blog meeting at Duke University to discuss some of the trends in blogging, including minimal styling, responsive design and using social media to alert your networks to your new posts.

I’m still gung-ho about blogs. I still know more people who don’t have blogs than I know people who do blog. That’s a lot of people to recruit to the blogging life.

That includes scientists, of course. One of the early foundations of the ScienceOnline community was the colorful tapestry of science blog networks, and now in ScienceSeeker we have a fantastic tool for mining the rich daily output from science blogs. But even in my own institution, Duke University, there aren’t that many scientists actively blogging. You remember the keynote speaker at our first ScienceOnline conference back in 2007: Dr. Hunt Willard suggested it would have to be the postdocs and fellows who would need to be trained to use online tools. At Duke, Dr. Zubin Eapen and the cardiology fellows are a shining example of that; Dr. Matt Sparks is another. It’s going to be fun to see others take up online science just as avidly and successfully.

I’ve been thinking a lot about my own blog recently, both in terms of the design and my writing style. I started my blog in 2000 to honor my grandfathers and relatives, and to share my own life and work and travels. I think of my style as storyblogging, in which I start with a current happening, relate it to a story in my or my family’s past, and make an observation. After 13 years of writing, I’d begun to doubt whether I had anything else to record. And, yet, when I search my archives for an anecdote or reference I’m sure I’ve blogged before, I don’t find it. I’m only halfway across my river, so I guess I’ve got a lot more to share. But I also know that Narcissus sat along the water and reflected on himself to unhappy consequence, so I want to challenge myself to add other layers to my blogging, such as deeper exploration of one of my areas of interest. You’ve written much about niche blogging, so maybe I’ll finally develop a niche other than myself.

You have been involved, for a long time, in different nodes of the blogosphere: science blogs, medical blogs, technology blogs, food blogs, local North Carolina blogs — what have you learned from these different communities? What’s on your blogroll of blogs to read daily?

I’ve learned that no matter the subject or node, when interesting people are given the tools — pencil, press, microphone or weblog — to delve deeply into their interests and reflect their areas of specialty, we end up with an awesome deluge of information, insight and inquiry. Niche blogs are great for the ways they focus on a topic or industry, and I understand your argument for writing only about one’s area of expertise. But I’m also convinced that when a writer steps out of his or her niche to provide glimpses of other interests or fragments of experience, we learn more about the person. And knowing more about each other helps us relate to each other better. I believed that at the beginning of the BlogTogether experiment, and over the last seven years, the ScienceOnline community has simply astounded me with its respect and friendship and inclusiveness and camaraderie.

I’ve been reading Dave Winer for a decade, learning from him and using his new World Outline tools, and I cherished the chance to go for a bike ride with him last summer. Michael Ruhlman and Ilina Ewen and Dean McCord are my food and beverage inspirations. 33 Charts, by Dr. Bryan Vartabedian, is quite relevant to my medical communications job. I read design blogs, web technology blogs, blogs by business leaders and venture capitalists, and personal organization blogs. I use Reeder to scan RSS feeds, and I’m rebuilding my river here. On Sunday evenings, I iron my shirts for the week, listening to podcasts by The Monti, Story Collider, StoryCorps and Joel Dueck.

Family looms large in your life and in your writing. Your personal blog is essentially a chronicle of several generations of your family, with you as an acute observer and eloquent archivist. Tell me what family means to you. Are you hoping that your children will continue preserving the family’s stories?

When I was in the fifth grade in Idaho, my mother was my teacher. One day, her assignment to the class was to write a story about the first snowflake to fall in winter. Around that same time, my father would gather me and my brothers in the kitchen, where he used the bare white wall to show his Peace Corps slides. In the mailbox each week, we’d get typewritten letters from my grandfathers: Zuiker Chronicles, from Frank the Beachcomber, were travelogues and camporee reports, while the two-page ‘peek into grandpa’s diary’ detailed the daily routines of Grandpa Sisco. The narrative lives of my ancestors were a daily presence in my youth. I’m a writer because of them.

In middle school, one of my favorite authors was James Michener. I read Caravans and Space, and when I read The Source, I became enamored with archaeology. Years later, on a holiday break during college, I visited my father on the island of St. Thomas. He hooked me up with a friend working on a dig in the hills where construction for a mall had uncovered a pre-Columbian Arawak village. I spent just a day there as a volunteer, carefully brushing dirt and picking out charcoal from a fire pit. Even the tiniest of details of the past, I learned, are important for understanding human history.

The Zuiker Chronicles Online and The Coconut Wireless weblog at mistersugar.com – in many ways, these are my ways of sifting through the little details in the lives of me and my family, and trying to find meaning in the connections.

Erin, my wife, has taught me so much about communication, about being honest and open and always aware of circumstances and contributing factors. While she can gab on the phone for hours, I get twitchy after 60 seconds on the phone, so we make time each week to just sit and talk, and we make sure to listen to the other, looking for the small details about each other that we didn’t know or recall. When we started our family, Erin helped me understand the importance of communicating with our children, reviewing the days activities and reciting bedtime routines. That’s a concept — the small just, just ahead — that I’ve been thinking a lot about lately as I try to incorporate a river of news into my work and blogging.

My children lovingly joke about my blogging, and they know I’m trying to be a better storyteller. But what I hope they take with them into their adulthood is the appreciation that I was present in their lives, much as my father was present in mine, and his father and grandfather before. I hope they feel the connections to those who have come before. I hope they extend those connections into the future.

Even more than medicine and science, your writing revolves around community, storytelling and food. You have been a force in gathering and growing the local online (and offline) community around stories and food. Tell me more about some of the projects and events you organized over time, and what looms in the future?

My mother has no sense of smell or sense of taste. She made a delicious Crock-pot Swiss steak, and tasty chocolate chip cookies, but I didn’t really know what garlic was until I got to college. Our dinners weren’t gourmet, but I do remember them as family meals, all of us sitting down together (no books allowed).

Erin’s mother happens to be an amazing cook, and I quickly figured out that my culinary ignorance offered me a perfect way to hang out in the kitchen, learn how to cook, help out with the dishes, and generally show Erin’s parents that I was going to be a good companion for their daughter. It worked. Now, I love to cook for Erin and our children, and of course I chronicle our meals at home and out on my blog. Most Sundays, I roast a chicken according to the instructions of Michael Ruhlman, whom I’ve hosted three times for food blogging events. I enjoy the process of reading recipes, gathering ingredients and putting them together for something tasty, such as the slivovitz that we enjoyed last week. One lesson I learned: don’t make kimchee, with its fermented shrimp paste, when your wife is six months pregnant.

Good food, good wine, good friends, good conversation — I crave these, and The Long Table has been one way I try bring them all together. Our first dinner was quite fun, with a bunch of people standing up to tell their own food-related stories. With ScienceOnline in good hands, I hope to do more of these dinners in the next few years. I still want to organize a food blogging conference, and maybe someday we can do a conference on food-science blogging.

What aspect of science communication and/or particular use of the Web in science interests you the most? What platforms and what types of online activity have you found most useful, or most gratifying to use? What new platforms or method of online communication, if any, are you excited about?

Well, the intersection of story and science is what got me into medical journalism, and it’s what still drives me today. The ScienceOnline community is filled with great examples of science stories told well. I’m watching #scio13 and ScienceSeeker daily to keep up. And the blitz demonstration sessions at ScienceOnline2013 will surely introduce me to new platforms and approaches.

I mentioned my high school physics teacher above. He assigned our class to work in teams on an experiment. My buddies and I wanted to study the Doppler effect, so I borrowed a tape recorder from my Grandpa Sisco, and met Kevin and Craig on a quiet country road late one night. We drove our cars past each other at different speeds, Craig in his Camaro with horn blaring, me in my Catalina with the tape recorder on. Just now I had to look up Doppler on Wikipedia to refresh my knowledge, but that experience of learning together with friends never dissipated.

Collaboration, clearly, is key these days in science. At Duke, a lot of my communications plan aims to help our investigators connect with their faculty colleagues to explore new multidisciplinary and team-science collaborations. On the Web, I’m interested in exploring how we can build personal network publications, something beyond multi-author blogs and something that can feature contributions from those who aren’t already writing on the Web. Many of my friends and relatives still do not have blogs of their own, and I’m interested creating some sort of online publication with them. Marco Arment’s new app/pub, The Magazine, and the writing platform Medium are helping me think about the possibilities.

You’ve been at every ScienceOnline conference, of course. What’s most memorable of any or all of them? How do you hope ScienceOnline2013 is similar or different?

Actually, ScienceOnline2013 is going to be my first. Learn why in my blog post on The Coconut Wireless.

What I’ve most enjoyed about ScienceOnline is watching the interactions, seeing the passions, witnessing the partnerships. You and I started with a conversation in a cafe, and we’ve gained a friendship and a community. I sincerely hope that all who attend ScienceOnline2013 and the many other events to follow will similarly be better persons because they openly engaged in the conversation.

Please share three descriptive words you hope people would use when talking about you.

Passionate. Pleasant. Present.

ScienceOnline2012 – interview with Anthony Salvagno

Every year I ask some of the attendees of the ScienceOnline conferences to tell me (and my readers) more about themselves, their careers, current projects and their views on the use of the Web in science, science education or science communication. So now we continue with the participants of ScienceOnline2012. See all the interviews in this series here.

Today my guest is Anthony Salvagno.

Welcome to A Blog Around The Clock. Would you, please, tell my readers a little bit more about yourself? Where are you coming from (both geographically and philosophically)? What is your background? Any scientific education?

My name is Anthony Salvagno (@thescienceofant) and I am a biophysics PhD student at the University of New Mexico. I was born and raised in New York and attended SUNY Albany for my undergrad where I received a BS in mathematics and a BS in physics. Originally I intended to do astronomy research, but after an internship at the Arecibo Obsedrvatory, I changed my career path and became deeply interested in biology.

Now I am an open notebook scientist, which means that I publish and share all of my research openly in real-time. I’ve been pursuing open notebook science for the past 4 years and have a wealth of knowledge to share. I’m always looking for others who share their science, and am always willing to talk to peers who want to share but aren’t sure how. If you fall into either category or just want to have a conversation feel free to contact me!

Tell us a little more about your career trajectory so far: interesting projects past and present?

My research is comprised of two completely different topics that are enveloped by my open notebook. The first project is called Shotgun DNA Mapping. Essentially, I can unzip DNA using a microscope objective and a high-powered laser (optical tweezers). Our lab has an algorithm that allows us to simulate this mechanism, and we can then compare our actual results to a library of simulated results. We are testing this with the yeast genome, but hope to one day expand it to the human genome.

I also study how heavy water affects living organisms. Back in the early 1930’s Dr. Gilbert Lewis first purified heavy water (D2O) from naturally occurring water. He then tested how tobacco seeds would grow in 99% D2O. This launched a series of experiments by a lot of scientists studying how heavy water affects various organisms. The research trail ends around 1969, with a lot of questions left unanswered. My research picks up where these studies left off and I extend them by using deuterium depleted water. I’m asking if life evolved a use for D2O since it occurs naturally in drinking water at very low concentrations.

What is taking up the most of your time and passion these days? What are your goals?

I have too many passions to deal with! It’s almost spring time so that means it’s time to start my vegetable garden real soon. Food is a passion of mine and my brother and I are hoping to open a food truck in Albuquerque in Fall 2013. There is a lot to learn about the food industry, food trucks, and business management and I’m learning all I can.

I also enjoy graphic design and do random odd jobs every now and then. I specialize in designing creative business cards and invitations. I also have dabbled in logo design and like to think I’m proficient in brand management. I’m working on a couple of graphic novels when I have time (still in the writing phase), and I’m also working on a story-time style book for adults.

As an extension of graphic design, I love

ScienceOnline2012 – interview with Sean Ekins

Every year I ask some of the attendees of the ScienceOnline conferences to tell me (and my readers) more about themselves, their careers, current projects and their views on the use of the Web in science, science education or science communication. So now we continue with the participants of ScienceOnline2012. See all the interviews in this series here.

Today my guest is Sean Ekins. Sean Ekins is a scientist who works from Collaborations in Chemistry as well as blogs and tweets  as CollabChem. He works collaboratively with other scientists all over the world on drug discovery, computational approaches for toxicology, tools for collaboration, mobile apps for science (Green Solvents, Open Drug Discovery Teams, TB Mobile). He is adjunct faculty at 3 US universities (UNC Chapel Hill, University of Maryland and UMDNJ) and on the board of several companies and organizations such as the Pistoia Alliance. He is currently focused on neglected disease research as well as how we can do drug discovery for rare diseases openly. He is technology focused and spends most of his time writing and occasionally winning SBIR and STTR grants so that groups he works with can develop their ideas further. He appreciates a good beer with his friends and reading to his two young children.

Welcome to A Blog Around The Clock. Would you, please, tell my readers a little bit more about yourself? Where are you coming from (both geographically and philosophically)? What is your background? Any scientific education?

I was born in Cleethorpes and lived nearby in Grimsby (an industrial area which is like Elizabeth, NJ..but on the east coast of the UK) until I was 18. I got interested in Biology because my uncle had left some of his high school books (when he went off to medical School) at my grandparents and I liked flipping though them. Ultimately I would study from a later edition of the very same book I read as a small child. I always remembered the picture of Crick and Watson for some reason. So I wanted to be a doctor but that was nipped in the bud. I managed to fail most of my exams (except biology) and just scrape into Nottingham Trent Polytechnic.

I then did a HND in Applied Biology and had a year in industry working at Servier (a French Pharmaceutical Company with an R&D site near Windsor) that really put me back on track. After this I went to the University of Aberdeen (Scotland) to do a masters in Clinical Pharmacology then stayed there to do a PhD. So I became a different kind of doctor. By this point I was interested in Drug Metabolism and different models for understanding how drugs behaved or interacted with each other and I was aiming for a career in the Pharmaceutical industry. In the early 90s the industry started to decline and constricted dramatically in the UK so I thought I better go to the US and do a postdoc. I landed in Indianapolis in 1996 to work at Eli Lilly and that really started me off again, kind of rebirth.

Tell us a little more about your career trajectory so far: interesting projects past and present?

So once in the USA I started doing similar work at Lilly as I had in Aberdeen, but focused on one enzyme (CYP2B6) involved in drug metabolism. This was the runt of the litter basically that no one was interested in much. Well that gave me a bit of flexibility and I started to dabble in computational software for understanding which molecules might bind to my enzyme. I basically started a new career doing computational drug metabolism or chemistry. I was having fun and realized I could do the same work with every enzyme my colleagues were working on. It was a kind of crazy time, by day I was at the bench and by night working on the computer. So in the days before a centralized database, I pulled the data they produced off the pinboard (it was all on a single sheet of paper), and used it to model every enzyme the group worked on.

I then left to work at Pfizer with my own group working on drug-drug interaction prediction while also keeping up on the computational side. Lilly then quickly hired me back to head a new group on computational ADME/Tox. Basically doing what I did as a postdoc but now the datasets were getting bigger as they started high throughput screening for lots of toxicology and metabolism related properties. I was now 100% an in silico scientist (using a computer for doing all my science) by 1999. I also started some collaborations with academics at this time which enabled me to publish research outside of the proprietary work at Lilly, this has been a continual thread to the present, each year adding more collaborators.

My next step was to join a start up in late 2001 that was using primarily computational tools to do drug discovery. I stayed with them until 2004 then joined a software company (eventually sold to Thomson Reuters in 2010) developing tools for systems biology (essentially connecting the dots between all the biology data being collected and superimposing all the genomics and proteomics data). I now focused more on integrating my models for drug-drug interactions into these tools and working on grants.

This was when I started to work from a home office which I have been doing ever since. By 2004 I had built up a nice range of publications on predicting drug interactions so I was able to obtain my DSc (science) from the University of Aberdeen in 2005. My next change of focus was getting the chance to edit a book for Wiley on Computational Applications for Pharmaceutical research and development at around the same time. This opened the door to edit a series (10 books to date) for them and coauthor 3 more books on computational aspects of toxicology, emerging technologies and collaborations.

From 2006-2008 I worked for small companies and startups getting grants and contracts working on drug discovery and pharmacoeconomics. Then my old computational chemistry mentor from Lilly recommended me to a software company in San Francisco developing a collaborative database for scientists. I have worked for them on neglected disease (Tuberculosis and malaria) work since then 3 days a week, leaving some time to carry on my academic collaborations and other consulting.

I am fortunate in that my work week rarely gets stale. I get to work on an amazing range of projects like understanding the evolution of nuclear receptors across different species from looking at the profile of bile salts that bind to them and modeling it in silico. Another day I might be building a model for a human drug transporter and predicting which other drugs may be substrates or inhibitors. I might be predicting which molecules from a drug company might interact with an ion channel called hERG, to help predict likely cardiotoxicity (something that goes back to my work at Lilly).  I might also be searching through FDA approved drugs to see if I can find new uses for them against a rare disease, or thinking of a dataset we could use as the basis of a new scientific mobile app. And that is just the 2 days of the week I set aside!

What is taking up the most of your time and passion these days? What are your goals?

Most of my time has been focused on demonstrating we can use the masses of data accumulated on compounds screened against Mycobacterium tuberculosis to build models that in turn can be used to suggest molecules to test. In this way we can dramatically focus on testing fewer compounds. All of this data is publically accessible. I would also argue that this approach can be extrapolated to other research areas. We are accumulating data but not learning from it fast enough to design the next experiment. When I am not doing this I am increasingly concerned about data quality and some of the things we take for granted like – why would the NIH release a database with significant errors, or a list of potential drugs without structures ? I spend about 50% or more of my time either writing papers to get my observations out there or writing grants for companies or with academics. I rarely write anything on my own so it is all collaborative.

It is difficult to predict exactly what I will work on from one year to the next – I try to move out of areas and jump into new ones because I find a project or collaborator doing something interesting which I think I can contribute too. What I find is this comes at the cost of starting from scratch, establishing your credibility with a whole new set of reviewers etc. It does not matter how many papers you have, how many citations or whatever your h-index is, because as soon as you work on something you have never published on before (e.g. green chemistry or whatever) or try to submit to a new journal I have found I spend a lot of time on these kind of transitional papers. Once you get accepted it’s a lot easier.

I like getting into new areas because you see things that are not obvious to those that focus on it for years. E.g. the green solvents app came out of me going by chance to a green chemistry conference and randomly picking a talk to listen to on green solvents. A group had worked on collating data for 2 years across pharma and then just hid it in a PDF. Being totally naïve to the topic I asked if there was an app with all the data and tweeted the idea. Alex Clark in Montreal responded and then had the app built in a few days and on the app store. It took nearly  a year though, to get a paper written and accepted on the topic because we faced an uphill battle with established scientists not understanding the value.

So I would say that is my passion going into new areas, establishing myself and publishing and learning a lot in a short time. I am in a race against time and I feel that even more acutely in the work on rare diseases because there are ~7000 of them and few have treatments, let alone cures. I know about so few and 7000 represents a Mount Everest of sorts. I met a parent of a child with a rapidly progressive neurological disease and that really gave me pause to think how we could help using all the tools I had worked on over the years, how could we speed up and disrupt pharmaceutical R&D – really that means just accelerate it beyond the way it has progressed for the past 50 years. Again it’s another case of adapting to change and some squeaky upstart saying lets try it this way. The great thing about each rare disease is the parents of children or the patients likely vastly outnumber the researchers so the balance of power is in their hands, they raise money and fund researchers to do what they need etc.

So my goal is to do science to help these people as much as I can while at the same time putting as much of what I do back into circulation through free apps or open papers etc..my goal for 2013 is put every paper I author primarily into open journals.

What aspect of science communication and/or particular use of the Web in science interests you the most?

I like the speed of putting ideas out there immediately on the web compared with the process of write a paper, get it reviewed and maybe many months later see it in print. I also like the ability to give a talk or poster and put my slides on slideshare, figshare etc so anyone can find them.

I am fascinated by the creative part of science. I have rarely had the vision (or aha moment) of the final paper idea before doing the research that led to it. But I can see how using the web and other tools may speed up the science to the point where the write up has to be automated or sped up too.  What tools could help with ideation? I do all my science on a computer,  all my papers are written on a computer..why not have all my ideas provided by it too.  Writing on a beermat or back of a napkin is one thing but is the iPad a good substitute? I have blogged by phone (painful), by iPad in a moving car (very slow) so I cannot see it as actually being ‘science communication anytime by any device’. A stationary position helps and some paper to draft ideas is handy. I say that as I stand typing this on a laptop surrounded by piles of papers and notes.

How does (if it does) blogging figure in your work? How about social networks, e.g., Twitter, Google Plus and Facebook? Do you find all this online activity to be a net positive (or even a necessity) in what you do?

I blog frequently about anything I see scientifically, perhaps the science I or others publish. I have an interest in collaborative elements and that may be what sets my topics apart, the collaborative angle.

I have found that I do get a sense of instant gratification from blogging by putting what I am thinking (for good or bad) out there on the web. My blogs have started collaborations, they have led to numerous papers. I even had a person quite high up at the NIH, send a rant by email to me and about 70 other scientists after one of my blogs caught their attention. It would have been better if they had posted it on my blog because the whole world could see what they were thinking too rather than just a select audience.  I have also had other experienced scientists support my views on my blog.

I tweet (I was slow to come to it) more at conferences which I in turn use for ideation and as a persistent memory device. For me it is just an extension of technology development and the marketing ideas as I tweet a link to blogs, slides, posters, papers etc… I have websites, linkedin etc which help bring in business but my science collaborations happen primarily through who I know, their connections and personal interactions. I have found that email blasts and blogs and tweets occasionally bring in collaborations too. The web represents another tool for reaching people as far as I see it. I do not live in it. I live with it.

When and how did you first discover science blogs? What are some of your favourites? Have you discovered any cool science blogs by the participants at the Conference?

I had been reading my friend Antony Williams blog as ‘ChemConnector’ for a long time.  A few years ago my wife pointed me to ‘In the Pipeline’ and I like that a lot because of the topics relevant to pharma, the comments are usually funny too. Since ScienceOnline I have been following lots of attendees and they point to good blogs so my eyes have been opened. I have to ration my time using Twitter and Flipboard, but I would point to David Kroll who writes very clearly.

What was the best aspect of ScienceOnline2012 for you? Any suggestions for next year? Is there anything that happened at this Conference – a session, something someone said or did or wrote – that will change the way you think about science communication, or something that you will take with you to your job, blog-reading and blog-writing?

The sessions on ‘information overload’ and ‘open science’ were highlights for me. The former made me think up an app that would bring all the information from the web and Twitter together. I got chance to work with Alex Clark again on this and we launched it early in 2012 called Open Drug Discovery Teams (a flipboard for science). We focused it on rare disease topics so we could help people share ideas, molecules and data and it inspired an IndieGoGo fundraising effort, numerous posters, a paper, a Youtube video etc..I think it’s still taking off and has potential to be developed for other uses. Over the year I have tweeted molecules and data into it so I can see the potential. If I had not attended the conference I doubt the app would have been developed. I would be keen to see what ideas people come up with that relate directly to the conference – perhaps it could expand my theory that conferences now are useful idea generators as much as for social networking.

The standard of the other blogs from the community have made me step up the quality of what I put out, I still have a way to go but if what I write gets someone in the mood to try some computational tools or connect to collaborate, I will have achieved something. So if there are folks at the next meeting who need a guest blogger or someone to throw their data at to model, then please get in touch. If you have ideas to improve what I put out I want to hear that too.

Antony Williams made me realize that blogging and everything we put on the web is as important as all the papers and patents because this can be used for altmetrics too. Being at ScienceOnline2012 made me realize that there were hundreds of other scientists on the same wavelength. Science communication is important and there are many ways to do it, even Twitter is useful as a tool for science.

 

ScienceOnline2012 – interview with Chris Gunter

Every year I ask some of the attendees of the ScienceOnline conferences to tell me (and my readers) more about themselves, their careers, current projects and their views on the use of the Web in science, science education or science communication. So now we continue with the participants of ScienceOnline2012. See all the interviews in this series here.

Today my guest is Chris Gunter.

Welcome to A Blog Around The Clock. Would you, please, tell my readers a little bit more about yourself? Where are you coming from (both geographically and philosophically)? What is your background? Any scientific education?

Thanks for having me visit! I have a Ph.D. and postdoctoral training in genetics (so as I tell my Lilkid, I went through like 27th grade). Geographically, I am from Georgia and have lived all over, most recently in Huntsville, Alabama. As of January 2013, I’m back in Atlanta.

Tell us a little more about your career trajectory so far: interesting projects past and present?

About halfway through my postdoc, I decided to go into professional science editing, so I worked at the journals Human Molecular Genetics and Science, and then spent almost 7 years as the editor for genetics papers in Nature. As I said in the story I told for The Monti at ScienceOnline2012 [and then wrote up for The Story Collider], that job is like riding the Knight Bus in Harry Potter, all the time.

For the last four years, I served as the Director of Research Affairs for a new institute called the HudsonAlpha Institute for Biotechnology. I wore many hats but several involve communicating our science to the public, from colleagues doing hardcore lab work through to politicians and local disease support groups. It was always a challenge to take the same paper we had coming out in Nature, for example, and summarize it for geneticists and for our donors who are not scientists.

On the side, I started a business I called Girlscientist Consulting in 2010, and for that I do science writing and editing for a number of academics and companies. I’ve also created and populated some twitter accounts, and advised on social media strategy.

What is taking up the most of your time and passion these days? What are your goals?

Right now, I am trying to create a new career in scientific outreach and communication. At the end of 2012, I moved to Atlanta to live near family, and am going to take a giant leap into the unknown, career-wise! I aim to pursue a number of projects in science communication and outreach. On my better days, I think of it like declaring free agency; on my worse days, I think of it as a trip to the poorhouse (but a fun trip!). There are some books in my head that want to be written, and a bunch of interesting collaborations in genetics and genomics.

What aspect of science communication and/or particular use of the Web in science interests you the most?

There are so many, but I will pick one:  earlier in 2012, a new colleague Anne Osterrieder and I published a commentary in the journal Genome Biology. We proposed that all scientific papers should have an additional, short section in the back called “outreach” or “outreach resources.” The section would list 2-4 links to media that can help the non-scientist or even the non-specialist understand the advances reported in that paper. For example, we created a section for a paper on long noncoding RNAs by linking first to a game at CSHL on understanding transcription, and then to a video explaining transcription and splicing, and then to a blog post on noncoding RNA.

Right now I am talking with a few journals/publishers to get this section actually implemented. The benefits are huge:  scientists simply must do a better job of conveying their work to people outside their micro-field of specialty, and science communicators can be inspired to create even more high-quality resources which will be linked to and used. Winning all around!

How does (if it does) blogging figure in your work? How about social networks, e.g., Twitter, Google Plus and Facebook? Do you find all this online activity to be a net positive (or even a necessity) in what you do?

I am lucky enough to be an editor on the Double X Science website, which lets me hang out with some of the coolest kids in science blogging. This came about through me meeting the awesome Emily Willingham and Jeanne Garbarino at Scio12! Blogging does not come naturally yet but they are kind enough to let me keep working on it.

My medium of choice is Twitter, and I’ve tried to get more and more working geneticists/genomicists to use the service. A recent success was the 6000+-person American Society of Human Genetics meeting in November 2012. I was asked by the chair of the program committee to stand up with him at the closing session and summarize the meeting based on what people were tweeting with the hashtag #ASHG2012. Given that I’ve experienced much scorn from hard-core scientists about the usefulness of Twitter in academia, I view this as a victory for social media!

When and how did you first discover science blogs? What are some of your favourites? Have you discovered any cool science blogs by the participants at the Conference?

Of course, Double X Science is awesome.

This year, I asked to write for Nature’s Soapbox Science section – Laura Wheeler and Lou Woodley, the ladies who run it, are excellent and the site has so many good resource posts.

I greatly admire the crew at Last Word on Nothing, and got to meet some of them at Scio12. And I got to share real North Carolina barbeque with Ivan Oransky of Retraction Watch and Embargo Watch, both of which I follow even if they sometimes raise my blood pressure.

In my subject area, the people at Genomes Unzipped are great, even if we don’t agree on everything. If you’re interested in the intersection of genetics/genomics and the law, Genomics Law Report is the place. And the site GenomeWeb has a Daily Scan blog full of insider tidbits as well as snark. The titles make me laugh regularly.

What was the best aspect of ScienceOnline2012 for you? Any suggestions for next year? Is there anything that happened at this Conference – a session, something someone said or did or wrote – that will change the way you think about science communication, or something that you will take with you to your job, blog-reading and blog-writing?

You know, being an editor at Nature means you go to a LOT of meetings. In my field there’s also a hierarchy of who’s publishing at the very top tiers, and who is not at the moment, and yada yada. The spectacularly awesome thing about ScienceOnline2012 was that it was so not like that. I met so many cool people whom I had read on Twitter and in blogs, and they were friendly and approachable. I was Scared. Out. Of. My. Mind. to be trying something new at The Monti’s storytelling night, and people were supportive before, during, and even after. That feeling of community has lasted and helped me make the career decision to move into science communication rather than traditional academia.

 

 

Virtually Speaking Science

Tune in tomorrow (Wednesday, January 16th) at 6pm EST to Virtually Speaking Science, online radio show about science. Host Tom Levenson and I will spend an hour talking about…well, whatever Tom asks, but likely about ScienceOnline, science reporting and blogging, the new media ecosystem, science communication, and other topics Tom and I have been discussing online and offline for the past several years. I hope you tune in….

‘Echo-chamber’ is just a derogatory term for ‘community’

I wrote this post back on February 27, 2011, but decided to re-post it here as the talk of echo-chambers is once again showing up in various articles and blogs. This was an expanded version of what I said at AAAS meeting in Washington DC and the original post (see the link) contains a longish intro, providing some more context, which I decided to cut out of the post here.

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Social norms build and enforce echo-chambers

You want to remain in a friendly relationship with the people you see (or potentially can see) often: neighbors, family, colleagues and friends. Nothing makes for a more unpleasant interaction than discussion of politics, ideology or religion with the people you disagree with.

Thus, there is a social norm in place: politics and religion are taboo topics in conversation. It is considered bad manners to start such conversations in polite company.

This means that most people are not exposed to views other than their own in their day-to-day interactions with other people.

In a small tightly-knit community where everyone’s politics and religion are the same (and people tend to move to such places in order to feel comfortable, on top of most likely being born in such a community to begin with), there is no need to discuss these topics as everyone already agrees. If the topic is discussed, there are no other opinions to be heard – it’s just back-slapping and commiserating about the evil enemies out there.

In mixed communities, the taboo against discussing politics and religion is strongly enforced. Again, as a result, there is not much chance to hear differing opinions.

There is no more airtight echo-chamber than a small community which interacts predominantly within itself, and not so much with the outside world.

Mass media builds and enforces echo-chambers

If you are born and raised by parents with a particular set of beliefs, you will also inherit from them the notions of which media outlets are trustworthy. If you were raised in the reality-based community, you are unlikely to waste much time with the media of the fantasy-based community (and vice versa). If your parents read Washington Post, you are unlikely to read Washington Times. You’ll prefer New York Times and not New York Post. MSNBC rather than Fox News. NPR rather than Limbaugh show on the radio.

But it is even worse than that – the choice is really not as broad. The media shapes the public opinion by choosing what is and what is not respectable opinion, i.e., ‘sphere of legitimate debate’ – what opinions to cover as serious, what opinions to denigrate and what opinions to ignore. There are many ideas that people hold that you will never see even mentioned in the US mass media and some of those are actually very legitimate in the Real World.

Furthermore, the press then divides the ‘respectable opinion’ into two opposites, gives voice to each of the two, and will never actually tell you which of the two is more reasonable than the other – “we report, you decide”, aka, He Said She Said journalism.

By presenting every issue as a battle between two extremes (and the fuzzy, undefinable “middle” is reserved only for them, the wise men), the mainstream press makes every opinion something to be sneered at, both those they deem worthy of mentioning and the unmentionable ones.

By refusing to acknowledge the existence of many stands on any issue, by refusing to assign Truth-values to any, by looking down at anyone who holds any opinion that is not their own, the mainstream press fosters the atmosphere of a bipolar world in which enmity rules, and the wagons need to be circled – the atmosphere that is so conducive to formation and defense of echo-chambers and yet so devoid of airing of any alternatives.

The Web breaks echo-chambers

When an individual first goes online, the usual reaction is shock! There are people in the world who believe what!?!?

The usual first response is anger and strenuous attempts at countering all other ideas and pushing one’s own.

But after a while, unbeknown to the person, all those various novel ideas start seeping in. One is not even aware of changing one’s own mind from one year to the next. Many ideas take time to process and digest and may quietly get incorporated into one’s gradually enriching and more sophisticated worldview.

We all learn from encountering all those other opinions even if we vehemently disagree with them. And we cannot help bumping into them all the time. There are no taboo topics online, no social norms preventing people from saying exactly what they think.

Forming, finding or defending a vacuum-sealed echo-chamber online is extremely difficult, if at all possible.

Your Facebook friends will post stuff that reveals their politics is different than yours (and you did not even know that about them before – they seemed so nice in real life!). By the time you get around to blocking them…it’s too late – the virus has already entered your head [this one sentence added 2-27-11].

People you follow on Twitter because of some common interest (e.g., food or knitting or parenting or technology or geographic area) may be very different from you when concerning some other interest, e.g., religion, and will occasionally post links to articles that contain opinions you have never heard of before.

If you are, for example, a liberal and tend to read only liberal blogs, you will constantly see links to conservative sites that are being debunked by your favourite bloggers – thus you will be exposed to conservative ideas daily.

If your interest is science, you are even luckier. The mainstream media, if it links to anything at all, tends to link either to each other or to governmental sources (e.g., CDC, USDA, etc.). Political bloggers link a lot more, but again the spectrum of sources is pretty narrow – they link to MSM, to governmental pages, and to each other (including the “opposition” bloggers).

But science bloggers link to a vastly broader gamut of sources. If mass media is linked to at all, it is usually in order to show how bad the coverage was of a science story. Linking to each other is important (and that includes linking to anti-science sites when needed to counter them), but what science bloggers do that others do not is link to scientific papers, documents, databases, even raw data-sets (including some Open Notebook Science bloggers who pipe data straight from their lab equipment onto the web).

What echo-chamber? Contrary to what some uninformed op-eds in the mass media like to say, the Web breaks echo-chambers that the social norms and mass media have previously built.

The online and offline social networks can work synergistically to affect real change

Many curmudgeons like to say that the Web does not do anything on its own. They (unlike behavioral biologists) do not understand the distinction between Proximal Causes and Ultimate Causes. Web is a tool that allows, among other things, many more people in much shorter time to organize to do something useful in the real world.

Release of Tripoli 6 was an instance in which massive outpouring of support online (centered around now-defunct blog ‘Effect Measure’) forced the mainstream media to cover the story which then forced the hand of politicians to do something.

Likewise, in the case of resignation of George Deutsch from NASA, it was investigative work by a blogger, Nick Anthis, that energized the blogosphere, which pushed the MSM to finally report on the story, which forced the event to happen.

PRISM was an astroturf website built to counter the pro-open-access NIH bill in the US Senate. Outpouring of online anger at the tactics by the publishers’ lobby inundated the senatorial offices – as a result the bill passed not once, but twice (GW Bush vetoed the first version of the large omnibus bill it was a part of, then signed it with no changes in the language on this particular issue) and the Senate is now educated on this issue.

But probably the best example is the Dover Trial (Kitzmiller v. Dover Area School District) that made Intelligent Design Creationism illegal to teach in US public schools. The ruling by Judge Jones (pdf) is one of the most powerful texts in the history of judicial decisions I am aware of.

There are anti-evolution bills popping up somewhere in the country seemingly every week. But because of the Dover ruling, they are all illegal. Most don’t make it to the committee, let alone to the floor of the state legislatures. Others are soundly defeated.

Before Dover, both Creationist sites and pro-evolution sites, when linking to me, would bring approximately the same amount of traffic to my blog. After Dover, getting a link from PZ Myers, Richard Dawkins, Larry Moran or Jerry Coyne brings substantial new traffic. Links from Creationist sites? Essentially undetectable by traffic trackers – I discover them only when I search my blog URL to specifically see if there are new links out there. Creationism, while still popular with many people, is politically essentially dead. The Dover ruling castrated it.

But Dover Trial would not have gone that way, and would not result in such a gorgeously written document by the Judge, if it was not for a small army of bloggers who contribute to the blog Panda’s Thumb. A mix of scientists from different disciplines, lawyers, etc., this group has been online – first on Usenet, later on the blog – for a couple of decades before the trial.

This is a group of people who battled Creationists for many years, online and offline, in courtrooms and political campaigns, in classrooms and in print. They know all the characters, all the usual creationist “arguments” (and provided all the answers to them in one place), all the literature, etc.

It is one of them who discovered that the new Intelligent Design “textbook” is really just a reprint of an old Creationist book, in which the word “Creationists” was replaced by “Intelligent Design proponents” throughout the text….except in one place where they made a typo: “Cdesign proponentsists”.

Ooops – a huge piece of evidence that Intelligent Design Creationism is just a warmed-up version of the old-style Creationism masquerading as something new. The Panda’s Thumb bloggers were at the trial as expert witnesses who provided all the expert evidence that Judge Jones needed to make his decision. People who organized on the Web have helped a meatspace history come to pass.

The online and offline social networks can work synergistically if the ecology is right

When looking at the role of online communities and networks in meatspace events, counting the numbers of networked citizens (or ratio of networked to non-networked citizens) is not sufficient – one also needs to know their geographic distribution, and their connectedness with non-networked citizens. The most fresh example are the so-called “Twitter revolutions” in the Arab world.

There are at least two possible scenarios (or thought experiments) that demonstrate the importance of ecological thinking about social networks:

1) There are 10 people on Twitter in a country. All in the same city, all in the same college dorm, good friends with each other. No communication with other people. No Twitterati in other cities. Nobody knows that other people in other cities have the same negative feelings toward the government.

2) There are 10 people on Twitter in a country. One each in 10 different cities. They communicate with each other via social networks continuously. Each is also a center of the local community of thousands of non-networked people using offline methods of communication. Through this connection, they become aware that there are millions of them, all over the country, and that a revolution is feasible.

In scenario 1, there are 10 buddies dreaming of revolution. In scenario 2, there are thousands of people in ten cities organizing revolution. In both, there are only 10 people on Twitter. Yet, the outcome is likely to be very different (I am aware that March 1991 demonstrations against Milosevic in Serbia were likewise coordinated by about a dozen people, well positioned around the city, who had email – most of us learned about the existence of email years later).

Thus, the ecology of the networkers, their spatial and temporal distribution, and their effectiveness in informing not just each other but many non-networked citizens, are important data one needs for this exercise.

‘Echo-chamber’ is just a derogatory term for ‘community’

I shamelessly stole this sub-heading from Chris Rowan on Twitter.

A great example of a case where the Web produced a community (aka echo-chamber) but that was a good thing, is the case of American atheists.

Before the Web, each atheist in the USA thought he or she was the only one in the country. The social norms about the impoliteness of discussing religion, as well as the real fear of reprisals by the religious neighbors, made atheism completely invisible. No need to mention that the media never mentioned them – they were outside of the “sphere of legitimate debate”.

But then the Web happened, and people, often pseudonymously, revealed their religious doubts online. Suddenly they realized they are not alone – there are millions of atheists in the country, each closeted before, each openly so after! It is not a surprise that “no belief” is the fastest-growing self-description in questions about religion in various nation-wide polls and censuses.

President Bush Senior, himself not very religious, could say that atheists are not real American citizens. A decade later, his son G.W. Bush, himself a fundamentalist, could not say that any more – his speechwriters made sure he mentioned atheists in the listings of all the equally American religious groupings.

Not all online communities need to be politically active. Discovering people with the same interest in knitting is nice. Exchanging LOLcat pictures is fun. But such interactions also build ties that can be used for action in the real world if the need arises.

Without the Web, I would not know many people whose friendship I cherish. Without the Web I would not have this job. Without the Web, me and many of my friends would have never gone to a meeting like AAAS or ScienceWriters or WCSJ. There would be no such meetings as ScienceOnline, SpotOn London, SciBarCamp, SciFoo, and others.

Every time I travel I make sure that people I know online – from blogs, Twitter, Facebook etc. – know I am traveling. I say on which date, at which time, I will be in which restaurant in which city. Twenty people show up. Most I have never met in real life before. But after sharing a meal, a beer, a handshake and a hug, our weak ties become strong ties. Superficial relationships become friendships. If there is a need to organize some real-world action – we can rely on each other to participate or help.

I have a separate Dunbar Number in each city I visited. And I try to connect them to each other even more than they are already connected via online communication. Which is one of the reasons we organize conferences and one of the reasons I am online all the time.

Related:

As Science Bloggers, Who Are We Really Writing For? by Emily Anthes.

Are science blogs stuck in an echo chamber? Chamber? Chamber? by Ed Yong.

Why horses and slivovitz are essential for writing science online

After years of me interviewing attendees of ScienceOnline conferences, yesterday Anton Zuiker turned the tables on me. We talked about my past, present and future, my professional and personal life, about horses, slivovitz, family, science, ScienceOnline community, support for new generations of science writers, and lots more. Go read it here:

An interview with Bora Zivkovic

Why the NYTimes “Green Blog” Is Now Essential

A few days ago we woke up to the news that the New York Times is eliminating their environment desk.

Predictably, the immediate reaction of many was “oh, noooo!”.

After all, whenever we hear such news, about a science or health or environmental desk being eliminated at a media organization, this means the reporters and editors of that beat have been fired.

But New York Times did not fire anyone. Instead, they will disperse the environmental reporters around the building. Instead of all of them sitting together, chatting with each other, they will sit next to other people, chatting with political, economic, science, health, education and other reporters.

The concern also arose as this piece of news came as a part of broader news of cost-cutting at the New York Times and actual impending layoffs of high-level editors.

And concern is certainly warranted. But there is potential for this to be a good thing. It all depends on the implementation.

My first reaction, quoted here, was that this may be a way to modernize environmental reporting at the Times. After all, reporters were not fired, the senior editors may be. All the environmental expertise is still at the Times, but now outside of its own ghetto, able to cross-fertilize with other beats, and to collaborate with reporters with other domains of expertise.

My cautiously positive reaction to this news probably comes from my recent thinking (and blogging) about three aspects of modern media. One is about the distinction between beats and obsessions. The other one is about the importance of expertise in today’s journalism. And the other one is the distinction between push and pull models of science (and other) communication.

Let me parse these a little bit more….

Beats vs. Obsessions

I wrote at length about this before, but let me restate it briefly, the part that is the most relevant to this situation.

….But another way the difference is explained is that an obsession is actually broader, not narrower, by being multidisciplinary. Instead of looking at many stories from one angle, it focuses on a single story from many angles. This may be a way to solve some Wicked Problems….

By dispersing environmental reporters from a dedicated desk to other desks, New York Times eliminated the environmental beat. Now environmental reporters are free to follow their own obsessions – whatever aspect of the environment they most care about at any given time. In essence, The New York Times is starting to quartzify itself (did I just invent a new word? I bet Quartz folks will be pleased). Instead of the environmental vertical, The New York Times will now have an environmental horizontal – environmental angle permeating a lot of other stories, as environmental reporters talk to and influence their new office neighbors.

Importance of Expertise

I have argued many times before, and most recently and forcefully here, that having or building expertise on the topic one covers is an essential aspect of modern journalism. Being a generalist will become harder and harder to do successfully. Specialization rules. And there are many kinds of expertise and ways of being a specialist.

It is much easier to turn an expert into a journalist than a journalist into an expert (though that is certainly not impossible), and there have been many calls lately (here is just the latest one) for journalism schools to insist on science, and even more importantly on math and statistics classes as requirements for their students.

I will now make an assumption that all NYTimes environmental reporters actually have sufficient expertise to report on the environment. They are now bringing that expertise to other desks. And they are now forced to discuss this with people whose expertise lies elsewhere. They will get into debates and discussions. They will teach each other. They will change each others minds on various things. They will be prompted by those discussions to dig in deep and do some research. That will inspire them to write the next piece and next piece, possibly in collaboration with each other. By forcing cross-fertilization between people with different specialties, NYTimes will force them all to learn from each other, become more sophisticated, to tackle more complex and nuanced stories, and to produce better articles. That’s the theory… We’ll see if that happens in practice. It all depends on implementation.

Push vs. Pull

You may have seen this excellent post that Danielle re-posted the other day.

I know I talk a lot about push vs. pull methods for science communication, but the earliest appearance of the concept on my blog is this brief but cool video clip. Soon after, I described and explained the concept in much more detail here and here. I have since applied it to a bunch of other topics, from the role of new/upcoming journalists to the different reporting strategies for different areas of science to strategies for gaining trust in the broader population to differences between science reporting on blogs vs traditional media to narrative storytelling in science.

I have argued many times that, despite the proliferation of many new outlets that may do reporting better, traditional big venues, like The New York Times (and just a few other ‘biggies’, like BBC, Guardian, Washington Post, The Economist, PBS, NPR and not many more), will continue to play an important role in the media ecosystem for quite some time. These are trusted brands for far too many people who grew up in that world. And they generally do a good job, even if nobody can be perfect, and expert bloggers are quick to point out errors as they appear.

But, nobody but a few crazy news junkies, all of whom are probably in the business anyway so not the target audience, reads any newspaper, including The New York Times, every day, every page, every article. I’ll tell you a secret – print edition of The New York Times lands on my front porch every night. My wife reads some of it sometimes. It is there mostly in case something I see online is so long that I want to sit back and read it on paper rather than on screen. Or if a friend of mine publishes something so I want to cut it out. Or my name appears in it, and I want to cut it out and save it, to show my Mom.

But back in the old times, when I actually read newspapers on paper, how did I do it? I pick up the paper. I open it up. I take out all the sections I am not interested in – Sports, Auto, Business, Real Estate, Classifieds, etc. – and throw them directly into the recycling bin. Then I read the parts I am interested in (front sections, domestic and world news, opinion, Sunday Magazine, Week In Review, Book Review). When I was a kid, I read the comics first, then TV and movie listings, then Kids section, perhaps some nature/science, perhaps some sports.

Other people have their own preferences. If there is such a thing as “Environment” section, or “Health” section, or “Science” section, how many people do you think automatically recycle them and go straight to Sports instead?

A dedicated Environment section is a pull method. It pulls in readers who are already interested in the topic. Others never see it. And being online doesn’t change a thing – it works the same way as on paper, in its own ghetto, isolated from the stuff people actually read.

The ‘push’ method inserts science/health/environment stories everywhere, in all sections of the paper, linked from all the pages of the website. It includes science/health/environment angles into many other stories. People interested in politics, economics, education, art, culture, comic strips, whatever, get a steady diet of relevant information mixed into their breakfast. They can’t avoid it any more. It is pushed onto them without their explicit request.

Let’s hope that The New York Times is thinking this way, as that would be the best possible outcome.

Central importance of the Green Blog

The managing editor Dean Baquet was reported to say this about the Green Blog: “If it has impact and audience it will survive”.

That is disappointing. Green Blog’s destiny is not, and especially now should not, be decided by the vagaries of traffic. It has suddenly become much more essential to the Times than they know, or so it seems. Let me try to explain…

Dispersing all the environmental reporting all around New York Times is a potentially great “push” strategy – feeding the unsuspecting readers a steady diet of environmental thinking.

But dispersing all the environmental reporting all around New York Times also makes it very difficult for the “pull” audience, the readers who are interested in environment, to find everything. People who are interested in environment, people like me, will be forced to look into automatically recyclable sections, like Business or Real Estate for articles with potentially environmental angles. That takes time and energy we don’t have, so we’ll rather miss those articles.

Now, some tech-savvy know-it-all is likely to post a comment “Use Tags”. Sure, you are a programmer, you know what tags are. Can you explain that to your grandma? Can you teach her how to use them?

No, the answer is Green Blog.

Green Blog should now become not just a cool place for interns to build their reporting chops, but also:

– place where all environmental reporters link to, explain, describe and quote from all their articles that appear elsewhere in the Times,
– place where someone puts together, every week, a summary and round-up of all environment-related Times articles of the previous week,
– place where all environmental reporters come to crowdsource their stories, get feedback and expert information from readers as they are working on their more and more complex stories
– place where all environmental reporters come to see each others work, now that they are not sitting next to each other,
– a central place where people like me can come and at a single glance see all of the Times environmental reporting in one place, and
– a central place where someone like Andy Revkin can check each day to see what else is going on in the Times regarding environment, so he can blog about it on Dot Earth.

This is like what ethologists call the “central foraging place”, like a beehive. Honeybees (readers) get information (blog posts) from other foragers where the flowers (NYT articles) are, so they go there (following links) to get nectar. They then return to the hive (Green Blog) to deposit the nectar (their comments), to tell others where else the flowers are good (e.g., on other sites beyond NYT) and to get new information so they can go for another run, again and again.

Now that there is no Environment desk and no Environment editor, the Green Blog should assume those two roles.

Now, if only higher ups at the Times get to read this post. If you know them, can you share the link to this post with them?

Image: Everystockphoto.com

ScienceOnline2012 – interview with Allie Wilkinson

Every year I ask some of the attendees of the ScienceOnline conferences to tell me (and my readers) more about themselves, their careers, current projects and their views on the use of the Web in science, science education or science communication. So now we continue with the participants of ScienceOnline2012. See all the interviews in this series here.

Today my guest is Allie Wilkinson (blog, Twitter).

Welcome to A Blog Around The Clock. Would you, please, tell my readers a little bit more about yourself? What is your background? Any scientific education?

I’m a freelance science journalist/multimedia specialist. It’s a bit funny that I’ve ended up here actually. In looking through some old files recently, I was reminded that I had taken a nature writing course back in college– so I guess the interest in writing was always in there somewhere. I have a bachelors degree in environmental studies (heavy on the marine science coursework) and a certificate in conservation biology. Indecision as to a specific thesis topic is what brought me to a science journalism masters program. I figured I would buy myself some time to figure it out, and learn a valuable skill in the process. What I learned was that I really love sharing science with the world. Even if this career choice had been my original goal, I don’t think I could have planned my education any better if I had tried. The science background, the communications training, and the art minor seem to be the right combination for a science journalist that loves visual aids.

Tell us a little more about your career trajectory so far: interesting projects past and present?

Right now I’m working on a few ideas for feature articles, and running This Is What A Scientist Looks Like, a community project I started last year to dispel the myth of the stereotypical scientists. I’m also doing a lot more photography, and getting my feet wet with video again. I worked on the USGS Coastal and Marine a geology podcast two summer ago as a video editor, but I’d like to get more experience behind the camera. I’m sure ScienceOnline2013 will spring a few new projects as well.

What is taking up the most of your time and passion these days? What are your goals?

Visuals. If you caught my ScienceOnline2010 session, you’ll know by now that I’m a pretty big advocate for the use of visuals in science communication. I think visuals have the power to grab someone’s attention, capture an idea more simply, or enhance a story. And for some, there is no denying what you see with your eyes. So I’m trying to practice what I preach and devote more time to learning and doing– data visualization, photography, and videography. My goal for this year is to produce more video content, and really get a handle on planning and filming. Most of my video work to date has been editing, but I want to leave the figurative cutting room and start manning the camera. (So if any video enthusiasts in NYC want to offer their expertise, or anyone without expertise wants to learn as well, let’s get together!)

What aspect of science communication and/or particular use of the Web in science interests you the most?

I really just want to get science out there, in whatever format works best. As you can tell from the last question, visual science communication is a big passion of mine. I’m also a technophile, and social media junkie. I think we’re at an exciting time in the history of science and science communication. The Web is changing how science can be done and allows opportunities for scientists to engage more directly with the public. Journalism is in transition as well, but I think the Web and mobile technology provides so many new opportunities to share the complete story, and integrate supplementary materials in a way that you simply can’t with print. The iPad versions of magazines that I’ve recently read are astounding. I love that they are interactive and you can learn more abut a graph or image, or watch a corresponding video, right there in the article.

How does (if it does) blogging figure in your work? How about social networks, e.g., Twitter, Google Plus and Facebook? Do you find all this online activity to be a net positive (or even a necessity) in what you do?

Blogging is a great way for me to experiment with writing about new fields that I usually don’t cover. It allows me to get more personal or casual if necessary as well. It’s also a valuable skill as many online media outlets run on blogging platforms such as WordPress. I’m also on all the major social networks, and use them to varying degrees and purposes. Is it a net positive? ABSOLUTELY. I’ve gotten clients due to the fact that I know my way around social media and blogging. I’ve generated story ideas. I’ve interacted with editors, which makes the idea of pitching them far less scary. I’ve had the opportunity to network and interact with people I wouldn’t normally get to in the real world. If you’re in science communication or science journalism today, you should be on social media.

When and how did you first discover science blogs? What are some of your favourites? Have you discovered any cool science blogs by the participants at the Conference?

I first discovered science blogs in 2008, through the first class I was taking in grad school. My professor said that the new media environment wouldn’t have the budget for a separate reporter, photographer, videographer, etc., and that we would have to be one-man-bands capable of doing it all. Our first assignment was to start a blog for a week, and the rest as they say, is history. My favorite blogs are Science Sushi, Neurotic Physiology, and Not Exactly Rocket Science. I think for the most part, most of the blogs I read I have discovered through ScienceOnline in some way or another– whether it’s meeting bloggers at the conference, or ScienceOnline community members sharing links on Twitter.

What was the best aspect of ScienceOnline2012 for you? Any suggestions for next year? Is there anything that happened at this Conference – a session, something someone said or did or wrote – that will change the way you think about science communication, or something that you will take with you to your job, blog-reading and blog-writing?

The best aspect of ScienceOnline2012 for me was getting in to the ever-popular Duke Lemur Center tour. After trying to get in every year, last year was the first time I succeeded. And then as with every ScienceOnline conference, the inspiration and the people. This is a time of year that I feel like I’m really in my element, and think “these are my people!” The discussions that take place at the conference and in the after hours are incredible, and so many collaborations and projects are born out of ScienceOnline. You leave the conference having a giant list of ideas that you want to work on. Last year’s keynote, and the buzz about it afterwards, made a huge impression on me. Hearing Mireya Mayor’s talk, and how she spent her whole career dealing with comments like “Well you don’t look like a scientist” is what inspired me to create This Is What A Scientist Looks Like.

ScienceOnline2012 – interview with Cathy Clabby

Every year I ask some of the attendees of the ScienceOnline conferences to tell me (and my readers) more about themselves, their careers, current projects and their views on the use of the Web in science, science education or science communication. So now we continue with the participants of ScienceOnline2012. See all the interviews in this series here.

Today my guest is Cathy Clabby (Twitter), a former longtime newspaper reporter, contributing editor to American Scientist magazine and onetime MIT Knight Science Journalism Fellow. In 2012 she jumped with both feet into digital publishing. She is senior editor of Life on Earth, the innovative biology textbook under development by the E.O. Wilson Biodiversity Foundation for the iPad only.

Welcome to A Blog Around The Clock. What is taking up the most of your time and passion these days? What are your goals?

After so many years in print media and collaborating with digital storytellers, I’ve become a digital storyteller myself working on Dr. E.O. Wilson’s Life on Earth. It’s an incredibly exciting project and I am very grateful to have been invited to join the small team creating it. One day the book will be 41 chapters that deliver a standards-based curriculum and gives high school students good tutoring on all the central topics of biology. Sounds familiar, yes? But it’s also intended to be something entirely new. With multimedia muscle we hope to show students biology like it’s never been displayed before, whether that be tours of DNA replication machinery inside (lots of) cells or helicopter tours of Gorongosa National Park in Mozambique, where a grand experiment in restoration ecology is underway.

I very much believe in this “book” and want to contribute as well as I can. I’ve become obsessed with taking the intelligence of high school readers seriously and figuring out ways to use storytelling to excite them about science. The longer I’m involved, the more ways I also see that I need to retool.

No longer can I be merely be a (decent, I hope!) word person waiting on artists and multimedia peeps to do their thing. I need to be able to size up the resolution of images; work the tools of iBooks Author, including the powers of Keynote; work up storyboards and narrations for videos; and try to absorb the fierce opportunities of multimedia. It’s an exciting new way of thinking but not always easy to learn on the job. All I can say is that I am on a steep side of multiple learning curves.

What aspect of science communication and/or particular use of the Web in science interests you the most?

Like so many of us, I fell for the Web the moment I laid eyes on it. I’m an avid consumer and my life is richer for it. As a former newspaper science reporter, I’m particularly intrigued by how this democratization of publishing has invited so many experts into public discussions about scientific findings and the rest that were once dominated by journalists. You know what I mean. Scientists are writing in engaging and informed ways about topics they understand deeply that science journalists frequently were learning on the fly. More times than man of us may like to admit, the content is simply better.

But I also worry about the loss of some of the roles that traditional media played in science coverage. For one, newspapers reached a really broad audience. I always relished the fact that I wrote for everyone, from the cafeteria staff at North Carolina legislature to the governor of the state when covering science for The News & Observer in Raleigh. That paper is lucky; it has advertiser support to run science features once weekly composed by a very able crew of freelancers.

But no one there is working the beat as news beat, on the prowl for deeper stories on ethical breakdowns, political interference with science, and the rest. The New York Times does that beautifully on the national level obviously but I don’t see their reporters too often developing confidential sources at major research universities such as Duke, UNC-Chapel Hill or NC State. Will the web ever deliver that sort of news on the regional level? If so, who will pay for it? Those questions remain important to me.

What was the best aspect of ScienceOnline2012 for you? Any suggestions for next year? Is there anything that happened at this Conference – a session, something someone said or did or wrote – that will change the way you think about science communication, or something that you will take with you to your job, blog-reading and blog-writing?

I attended the first ScienceOnline back in 2007, I’m happy to say. That was the first place I ever saw someone sitting at an event, pop out of a chair, turn and take a picture of those around him and sit in his seat to post that picture on a blog. I was intrigued. But last year was so different. What struck me most was the variation and caliber of digital publishing that I learned about. Two people stick in my mind. One was Olivia Koski of Atavist. I was fascinated to learn about the ways her Brooklyn-based outfit was merging so many multimedia tools to give authors an independent way to share their work. I’m all for that sort of democratization. The second was Scott Rosenberg, the executive editor of Grist, which is tackling something I really believe in: covering environmental issues in informed and understandable ways. If there is a more important story than ecology and the environmental at the dawn of the 21t century, I’m not seeing it. So many smart people there were trying to do something new really well.

Thank you for the interview!