Category Archives: Blogging

Anna Kushnir interviews Rose Reis

In my daily interviews I always ask: what new blogs did you discover at the Conference? If anyone asked me that question – and you know it’s hard to surprise me! – one I’d pick would be the INFO Project blog run by Rose Reis, now my daily read.
Now, Anna (where did she get the idea, I wonder?) interviews Rose over on the JoVE Blog and the interview is worth your time. And yes, sooner or later, Rose Reis will be interviewed here as well – stay tuned.

This is So.Not.True!

sci-blog.png
(from here; hat-tip)
Or perhaps Gabe has been right all along and I am not really a science blogger….

CNN control-freaks fire a producer for blogging!

Via Ed Cone (also see SteveK and McDawg) I see that CNN did Teh Stupid – they
fired their producer Chez Sapienza. Why? Because he is blogging! On his own blog as well as on HuffPo. He writes about the industry as a whole and writes well, though nothing specifically about CNN or his job there, so this is not a classical case of being Dooced, but a case of total blindness. The corporate media is used to controlling the message. Blogs drive them crazy. They cannot fire you and me, but they can fire one of their own, just for the sin of being a blogger, i.e., being the Enemy #1. Idiots. All they got is publicity about their own stupidity and I bet Chez has an Inbox full of job offers already. And now he CAN freely blog about the stuff he knows from the inside of the CNN newsroom and I bet that will not be very nice for them when it comes out. Terry Heaton and his commenters say it the best.

Happy birthday to the Nature Blog Network

Yes, I know, Scienceblogs.com is The Borg. But we like our little sister, the Nature Network and they have made some impressive strides over their first year in existence:
Nature Network turns 1 today: progress report
Happy 1st Birthday!
Happy Birthday Nature Network

In which we proudly announce the Editor of the Open Laboratory 2008

Yes, that time has come….Going it alone in 2006 was far too much work for one person. Reed Cartwright was the first guest editor in 2007 and this was a perfect solution. So, going on into the new year and new victories, it is now time to announce the Editor of the Open Laboratory 2008. Drumroll….
The anthology editor for this year will be Jennifer Rohn!!!
Jennifer is a post-doc in cell biology at University College London, she blogs at Mind The Gap and is the Editor of LabLit.com.
Stay tuned for more book-related news soon. The new submission form will be available very soon as well so start checking your archives for posts written since December 21st 2007.

Sb Reader Survey

Our Seed Overlords need to know more about our readers. Please do a quick survey and put your name in the hat to win an iPod.

Welcome the newest SciBling!

Go say Hello to Alice Pawley, the new co-blogger on On Being a Scientist and a Woman. Post a comment on her inaugural post.

Welcome the newest SciBling!

Go say Hi to Jessica Palmer of Bioephemera!

New on….

….Scienceblogs.com
Busy today. What are the others writing about?
Abel Pharmboy and DrugMonkey discuss the causes of death of Heath Ledger.
Nature had some articles about ScienceDebate 2008 and got it all wrong. I agree with what John Lynch wrote.
PhysioProf explains the brave new world of NIH Grants – not what I remember from the times of plentiful funding.
Angry Toxicologist on animal testing.
Obligatory Reading of the Day: Janet on the project of being a grown-up scientist.
The awesomest movie of a gigantic shark.
Shelley and Steve are Of Two Minds…

Science+Art+Technology+Media – meetings around the World

There were already two Science Foo Camps (in summers of 2006 and 2007) and two Science Blogging Conferences (in winters of 2007 and 2008).
But the hunger for such meetings is far from satiated. So, if you have time and money and can travel, you can choose to attend the SciBarCamp on March 15-16, 2008, where Eva is one of the organizers and Larry will be there.
Or you can go to the International Science Media Fair in Trieste on April 16-20, 2008. I’ll be there, on two panels, one about Open Access, another on Science Blogging.
Or, a little later, you can attend the World Science Festival in NYC on May 28 – June 1, 2008.
Northeast US, Southeast US, California, Canada, Europe – not bad for geographic distribution for now, don’t you think?

Everything you ever wanted to know about Wikipedia and Facebook but were too shy to ask

Two books – Facebook: The Missing Manual and Wikipedia: The Missing Manual arrived in my mailbox today. How did I get them? By being on Facebook, getting a message from the O’Reilly Facebook group and being one of the first 20 to respond. The first glance at the books and the tables of contents suggests both books will be useful references and I will try to use them in the near future as I plan how to take over the world!

Basic and oh-not-so-basic science blog posts

You probably know that John Wilkins has been collecting a list of science blog posts under the heading of Basic Concepts in Science – where various science bloggers (and not only Seed sciencebloggers) took some time to explain some very basic terms, concepts and ideas in various scientific disciplines.
Recently, John also started collecting another list of blog posts, these a little more difficult to comprehend (perhaps necessitating reading the Basic posts first) – the Intermediate concepts in science. Check them out.

BlogTogether.org

Yesterday, a bunch of us (e.g., Paul, Brian, Ruby, Wayne, Jackson, Mark and me) got together for tea at Anton’s house, analyzed the past year of bloggy activity and plotted to take over the world next year: meetups (a.k.a. beer-blogs-bowling events), science blogging conference, faithblogging, foodblogging, storyblogging and other events we are thinking of doing over the next year.
The second Science Blogging Conference was a great success (see the ever-growing list of blog posts about it) and we intend to do it again next year. But this is certainly not the only thing we at BlogTogether do, online or offline. Monitor our blog for updates throughout the year and subscribe to our mailing list to stay in touch.
If you live in the Triangle area of North Carolina and are interested in our online community and want to do something new or help us do something that’s on our plan, read this and holler – everyone’s welcome.

Interviews

How do you like the daily interviews?
I thought that would be great PR for the Conference – both with the interviewees saying nice things about it, and just showcasing what a nice bunch of people showed up this time around. Perhaps this will make more people think seriously about coming next year.
And I thought it would be nice when some of the people say nice things about science blogs, scienceblogs.com, Seed, PLoS, Open Access, me, etc.
And I thought that would be an easy way for me to get 40-something days worth of interesting posts without too much work.
But I never expected that I would enjoy reading them as much as I do. All the people are even more fascinating than I thought. Even people who I know well reveal something new I did not know before. Great fun for me!
Seven have been posted so far. I have 12 more lined up for the next 12 days, another seven I am waiting for answers from, and another 24 I still have to send questions to. I am sending them in a staggered way and publishing them in order I get them.
Just wondering if you all also enjoy reading them as much as I do?

“When copies are free, you need to sell things which can not be copied!”

Kevin Kelly wrote an excellent and thought-provoking post: Better Than Free – if I find some time I will write more about it later. But for now – it is The Obligatory Reading of the Day and I welcome your reactions.
(Hat-tip: Bill)

Blogroll Amnesty Day

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Jon Swift and Skippy are reminding us that this weekend is the time for the annual Blogroll Amnesty Day.
The rule is to highlight, link to, and add to one’s blogroll, some deserving blogs that have smaller traffic than you. Now, it’s sometimes not easy figuring out who has what traffic – if you really like a blog you probably think the traffic there is higher than it is.
Also, I have real trouble picking just a few. Go and check my Blogroll – it’s huge! And only a few of them are Big Dawgs. Most are rather smallish blogs. Check them out, at least some of them.
I have been really busy lately so I have not updated my blogroll in a long time. I intend to add all the blogs I mentioned over the last few months in my Blogrolling For Today posts, so check those out as well.
But before I go ahead and turn my monstrously big Blogroll into something even bigger, please let me know, in the comments, who is still missing from it yet deserves to be there? Is it your blog? Give me the URL.

Welcome the newest SciBling!

Go say Hello to Green Gabbro!

Nice article on Coworking

Carrboro Commons interviews Brian Russell about Carrboro Coworking. As a telecommuter, I am quite likely to participate in this. I’ll keep you posted….

Best Education Blogs

Check them out:
Who Are the Top Edubloggers?
Education Blog List

Help name the new blog-zygote!

Shelley and Steve were getting a little lonely (just intellectually, of course, don’t get any weird ideas!), so, not much to tell, one thing led to another and….they will be fusing their two excellent and successful blogs into a new Superblog, right here on scienceblogs.com!
But, they have a problem – the domestic squabbles have already started – they could not agree on the name for the new blog! So, what to do? What bloggers always do – ask the hivemind! So, go to either one of their blogposts (linked above) and put in your suggestions. They will look them over and pick a winner (who will, actually, get some nice prizes).

Blogs – obligatory readings of the day

Blogs by Sarah Boxer, in New York Review of Books.
Laelaps responds: I don’t quite get the same impression…

Welcome the newest SciBling!

Craig and Peter welcome Kevin to Deep Sea News. Go say Hello!

‘Working with the Facebook generation: Engaging students views on access to scholarship’

Here is a video of SPARC-ACRL Forum ’08 on 12 January, 2008 at the Pennyslvania Convention Center in Philadelphia:

The SPARC-ACRL Forum at ALA ’08 entitled “Working with the Facebook generation: Engaging students views on access to scholarship.” Panelists discuss the merits of student activism, patent reform, blogs as a communication medium for scientists, and students as active members of a discussion about the right to access information for scholarly work. Features Andre Brown, Nelson Pavlosky, Stephanie Wang, and Kimberly Douglas as panelists.

Pay particular attention to Andre Brown and minutes 42-55 as he talks about science blogs and Science 2.0 including mentions of all the usual suspects (Jean-Claude Bradley, Rosie Redfield, Reed Cartwright, Bill Hooker, Peter Suber and me):

SPARC-ACRL Forum ’08 from Matt Agnello on Vimeo.

Welcome the newest SciBlings!

Go say Hello to DrugMonkey and PhysioProf, the newest acquisitions by The Borg, at DrugMonkey blog. Both are regular readers and commenters on this blog, always providing thoughtful and intelligent (and provocative) additions to the conversation. A great addition to the scienceblogs.com universe!

Open Lab 2007 – soon in a bookstore near you!

OpenLab07-cover-adj.jpgThe day before yesterday, my copy of The Open Laboratory 2007, the second annual science blogging anthology, arrived in the mail.
So yesterday, Reed and I met at a coffee shop and looked it over. It looks great! Reed knows what he’s doing and is a perfectionist, so of course the book looks perfect.
So, I went back online to Lulu.com and approved the book to be sold in various online and offline bookstores. The book information will be sent to Bowker’s Books In Print and once approved by Bowker, Lulu will upload the title to their distribution network. This process is generally completed within 2-3 weeks. You can expect to see the book listed on Amazon.com and other online retailers within the next 6 to 8 weeks.
As for brick stores, let’s hope they pick the book out from the catalogue. But you can help in this department. Each one of you, no matter where you live, probably have a favourite local independent bookstore. Next time you visit there, tell them you’d like to see them carry this item:
The Open Laboratory: The Best Science Writing on Blogs 2007 (Lulu.com, 2008; ISBN: 978-1-4357-0832-7).
I know I’ll be calling Nancy at Quail Ridge Books and Katharine at Market Street Books around here.
The book will always be available online on Lulu.com – just go here and place your order (you can save money by buying a downloadable PDF, but then you will miss the feel of holding a pretty book in your hands and it does make a difference). Buy an extra copy and donate it to your local library. Use it in the classroom (or suggest it to a teacher you know). Buy a few and save them for next year’s Christmas presents.
The proceeds will go to BlogTogether.org and will be used for the organization of the next Science Blogging Conference and the editing of the next edition of the anthology next year. If this is something you want to support, keep in mind that the royalties are greater if you buy directly from Lulu.com than from any other source.
If you work for MSM and want a review copy of the PDF, contact Reed about it. I will also try to see if Lulu.com will print a few review copies of the book for me to distribute to science magazines and journals that are interested in reviewing it. Note to authors: I am still working on getting the free copy for each one of you like Lulu.com did for last year’s anthology authors.
The first review is already out! You can read it in today’s issue of Nature:

The editor of this second anthology of the best scientific communiques from the blogosphere thinks blogs offer new ways to discuss science. The Open Laboratory 2007: the Best Science Writing on Blogs (Lulu.com, 2008) takes the curious approach of using dead tree format to highlight the diversity of scientific ideas, opinions and voices flowing across the Internet. Every year a different guest editor — here Reed Cartwright, a blogger and genetics and bioinformatics postdoc from North Carolina State University — picks the best posts to coincide with the Science Blogging Conference (in North Carolina on 19 January). First-hand accounts bring to life the stresses of a graduate student, a mother returning to the bench and an archaeologist’s joy at unearthing mammoth fossils. Topics tackled are as varied as the writers, from Viagra and tapeworms to trepanning. Explanations are often offered with a personal twist, such as a father’s tale of his child’s Asperger’s syndrome. The measured voices of trustworthy academics make medical research easy to swallow. If you are overwhelmed by the surge in science-related blogging and don’t know where to start, then this compilation may help you steer a course through the sea of perspectives on offer — or inspire you to start a blog yourself.

Now, buy The Book!

Science Bloggers: Help a Biology Teacher!

On the heels of David Warlick’s session on using online tools in the science classroom and the student blogging panel, here is the opportunity for some of us (that means YOU!) to actually do something about science education online:
Elissa Hoffman is a high school teacher and she has started a blog for her AP Biology class at Appleton East High School in Appleton, WI. She would like it to be a platform with which she can introduce her students to current science research and scientists. One of the things she’d really like to do is find people who’d be interested in “guest blogging” on various topics in biology (or science in general). She has found two already (and I am third), but would like to find more. If you think may be interested, Elissa would be really, really appreciative.
The blog is here and the call for guest-bloggers here. As you can see, Elissa has already posted a few cool posts on evolution and behavior. She is looking for a blog post on a topic of the blogger’s choosing, which could be virtually anything from advice on science as a career to subject-specific knowledge, and then some responses to the kids’ comments/questions.
If you are interested in contributing one post and later responding to students’ comments, you can email Elisse at hoffmanelissa AT aasd DOT k12 DOT wi DOT us.

Welcome the newest SciBling!

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Pure Pedantry is a great blog. Jake writes some cool neuroscience stuff, and an occasional political post I disagree with (but not enough to start a blogwar). Kara Contreary has recently retired (though we’ll see how long that lasts!) so Jake has been all alone and wondering what to do. Of course, he could just coast along, threating the primacy of Pharyngula in traffic due to his Britney Spears post that is so popular these days.
If people come to Pure Pedantry for Britney and then look around, you know what they are looking for…
Well, that is sorta what they will get. Sorta. Sex, but from a very different perspective – that of a behavioral neuro-endocrinologist: reproductive and parental behavior (parental! on a blog with a Britney post!). Jake got a new co-blogger and it is a real steal (OK, I am pouting, Jake just acted faster than I did) – Kate Seip of Anterior Commissure.
Regular readers of my blog know I linked to Kate approximately five billion times, until she decided to stop blogging at Anterior Commissure and give more time to her studies and to the Science Communication Consortium (and its affiliated blog), her program of a series of talks and panels on improving science communication.
And you know that I took the picture of her one night around 1am in front of a bar in Manhattan, the picture that was her profile picture on Anterior Commissure ever since.
And you know that one of her posts appears in the 2nd blogging anthology.
And you know how sad I was when she stopped blogging.
So, I am really, really happy that Kate is now officially one of my SciBlings – so go now and say Hello.

ResearchBlogging.org

Dave and Co. have been working hard over the past few months and now (actually on Saturday at the Conference) Dave announces that ResearchBlogging.org is live and in action! The BPR3 site, where the entire initiative was hashed out and built will continue to serve as the News Blog.
So, register your blog. Whenever you write a post about a peer-reviewed paper, put in the icon (if you want – you can make it invisible) and go to the RB site to resolve the DOI of the paper so it shows up in your post as a proper reference. Shortly after you publish the post, the link will show up on the aggregator on the main page. And you can browse past entries as well.
Dave provides the details.

New Media and Science Communication

The Science Communication Consortium presents:

DISCUSSION ON THE ROLES OF EMERGING MEDIA OUTLETS IN COMMUNICATING SCIENCE
Thursday, JAN 31st, 7-8:30pm
Mount Sinai School of Medicine, East Building Seminar Room (1425 Madison Ave at 98th St, NYC)
A discussion of how science is communicated effectively – and ineffectively – through emerging media outlets, such as blogging, podcasts, online multimedia, and more.
Blogs, podcasts, and other new media outlets have changed the way people learn about scientific info, and shortened the shelf life of these stories. This immediacy of information presents new opportunities, as well as certain challenges, for science communication. Join us for a discussion of how scientists and journalists can reach a savvy audience by using new media outlets to communicate effectively about this research, while avoiding pitfalls.
Please join panelists:
CARL ZIMMER, award-winning science writer and author,
CHRISTIE NICHOLSON, science journalist and contributor to Scientific American’s “60-Second Psych” online programming
ELIENE AUGENBRAUN, President/CEO of ScienCentral, Inc.
EITAN GLINERT, project coordinator of science-based video game”Immune Attack”
KAREN FRENKEL, documentarian and science writer
Post-lecture reception will be sponsored by SEED Media Group, publishers of SEED magazine and scienceblogs.com.

Student Blogging

During the Student blogging panel–from K to Ph D at the Conference (actually, the session I enjoyed the best of all – and that is not easy as all the sessions were fantastic), a point came up about the way universities are slowly changing their attitudes toward students blogging. Actually, one of the panelists, Sarah Wallace, is a direct beneficiary of a recent 180-degrees turn by Duke University. Instead of looking askance at student blogging, Duke is now actively encouraging students to write blogs about their research, providing them with the platform and tech support and faculty guidance.
So, it is nice to see that another batch of Duke students is blogging right now – from Hawaii – Nicholas School Students Visit Hawaii’s Marine National Monument:

A group of our Master of Environmental Management students, professors Andy Read and Dave Johnston, and environmental journalist Eugene Liden are exploring Papahanaumokuakea, America’s largest marine wilderness, through Jan. 25. As they make their way through the Northwestern Hawaiian islands, they will be sending back regular blog posts and photos about what they are learning. They also are videotaping the experience, and we will make clips available soon after the trip. I thought you might want to check out the site and share it if you think people in your area might be interested. So far they have spent three days in Oahu, and yesterday they flew to Midway and should post from there by tomorrow.

Check them out – the new generation of science bloggers is coming up! And they are good!

The BT Catalyst Interview with Anton Zuiker

Boris Hartl interviews Anton Zuiker , the manager of internal communications at Duke University Health System, founder of BlogTogether.org, and the co-organizer of the Science Blogging Conference. Excellent read.

Science Blogging Conference – Teaching Science: using online tools in the science classroom

2008NCSBClogo200.pngIf you look at the Program page on the wiki for the Science Blogging Conference, you will see, for the Saturday program, there are 12 excellent sessions, a panel and a talk. Each has a discussion page which you should edit to add your own thoughts, ideas and questions.
One of the sessions I expect to have a big draw, particularly with so many science teachers at the conference, is the session on Teaching Science: using online tools in the science classroom, led by a real pro on the topic – David Warlick. David already has an ongoing discussion of the session on his own blog where you are encouraged to join in the conversation.

An awesome new medical blog

Some top medical bloggers got together and started a new group blog Science Based Medicine:

Science-Based Medicine is a new daily science blog dedicated to promoting the highest standards and traditions of science in medicine and health care. The mission of this blog is to scientifically examine medical and health topics of interest to the public. This includes reviewing newly published studies, examining dubious products and claims, providing much needed scientific balance to the often credulous health reporting, and exploring issues related to the regulation of scientific quality in medicine.

Anton Zuiker on blogging (and science blogging)

Wayne Sutton (of ‘Local Conversations’) posted a great interview on the evolution of blogging with Anton Zuiker:

Local Conversation interviews Anton Zuiker from waynesutton12 on Vimeo.

Welcome the Newest SciBling

Go say Hello to A Good Poop!

Open Lab 2007 – the winning entries for you to see!

Well, The Day has arrived! After reading all of the 486 entries at least once (and many 2-3 times) and after calculating all of the judges’ ratings of all the posts, Reed Cartwright and I are happy to announce which blog posts will be published in the second science blogging anthology, the “Open Laboratory 2007”.
First, I want to thank the judges (at least those who do not wish to remain anonymous – let me know if I missed one of you) for spending their holiday break reading, commenting on and grading all the submitted posts and making our job that much easier. Those are: Anna Kushnir, Greta Munger, Tiffany Cartwright, Karen James, Anne-Marie, Michelle Kiyota, The Ridger, Abel PharmBoy, John Dupuis, Blake Stacey, Greg Laden, Michael Rathbun, Jeremy Bruno, Egon Willighagen, Martin Rundkvist, Arunn Narasimhan, Mike Dunford, Steve Matheson, Brian Switek, Kevin Zelnio, Alex Palazzo, John Wilkins and Mike Bergin (and one or more anonymous referees). Please visit their sites, look around, boost their traffic and say Hello.
Like last year, the book will be published by Lulu.com, the on-demand online book publisher based here in the Triangle area of North Carolina.
I will post occasional updates on the process of turning all these posts into a book, which should be published and up for sale just in time for the 2nd Science Blogging Conference. And now, here are the winners…drumroll please…
The Poem:
Digital Cuttlefish
Much Ado About…The Brain?
The Comic:
Evolgen
The Lab Fridge
Essays:
10000 Birds
In Memory of Martha
Star Stryder
You are the Center of the Universe (and so am I, and so is Gursplex on Alpha Eck)
The Panda’s Thumb
Stuck on you, biological Velcro and the evolution of adaptive immunity and Behe vs Sea Squirts, fused into a single article.
Bad Astronomy
Happy New Year Arbitrary Orbital Marker!
Aetiology
Would you give your baby someone else’s breast milk?
Anterior Commissure
Why we bond – Individual recognition, evolution, and brain size
Retrospectacle: A Neuroscience Blog
How Much LSD Does It Take to Kill an Elephant
Archy
Visiting the Wenas mammoth and Looking for drowned mammoths fused into a single essay.
Backreaction
Science And Democracy III
The Questionable Authority
Adam, Eve, and why they never got married
Bit-player
Measure twice, average once
Bootstrap Analysis
Shrew party
Cocktail Party Physics
Genie in a Bottle
Evolving Thoughts
Ancestors
Coffee Talk
What is the meaning of (grad student) life?
A Blog Around The Clock
The Scientific Paper: past, present and probable future
Aardvarchaeology
Your Folks, My Folks in Prehistory
Creek Running North
Breathing in, breathing out
Thoughts from Kansas
Neither means, motive nor opportunity: a guide to dysteleology
Deanne Taylor’s blog
Faculty diversity in science
Deep-Sea News
Our Ocean Future: The Glass Half Empty and Our Ocean Future: The Glass Half Full fused into a single article.
Depth-First
SMILES and Aromaticity: Broken?
Duas Quartunciae
The Evolution of Wings
Effect Measure
Tamiflu resistance: digging beneath the headlines
The End Of The Pier Show
No Girrafes On Unicycles Beyond This Point
The Loom
Build Me A Tapeworm
The Pump Handle
Popcorn Lung Coming to Your Kitchen? The FDA Doesn’t Want to Know
Denialism blog
The Road to Sildenafil – A history of artifical erections
The Other 95%
Anemones Raise a Tentacle in Support of Evolution
Highly Allochthonous
Testability in Earth Science
Invasive Species Weblog
Square Pegs
Laelaps
Homo sapiens: What We Think About Who We Are (Redux)
Life of a Lab Rat
Riding with the King (also found here)
Living the Scientific Life
Schemochromes: The Physics of Structural Plumage Colors
The Primate Diaries
The Sacrifice of Admetus
Afarensis
The First Fossil Hunters: Paleontology in Greek and Roman Times
All of My Faults Are Stress Related
The Sound of Mylonites
Microecos
In the eyes of the Aye-ayes
Mind the Gap
In which I leap into the Void, In which I lift my finger from the ‘pause’ button, In which I contemplate the road taken, not taken, then re-taken and In which I rejoice in muscle memory fused into a single essay.
Omni Brain
How moving your eyes in a specific way can help you solve a problem
Minor Revisions
Indefensible
Neurologica
Sloppy Thinking about Homeopathy from The Guardian
Neurophilosophy
An illustrated history of trepanation
Notes from Ukraine
The Chernobyl liquidators: incredible men with incredible stories (Part 1), (Part 2), (Part 3) and Musings about the liquidators fused into a single article.
Pharyngula
Segmentation genes evolved undesigned
Pondering Pikaia
Moving Mountains
Quintessence of Dust
They selected teosinte…and got corn. Excellent!
Adventures in Ethics and Science
Getting ethics to catch on with scientists
Schneier on Security
Cyberwar
Shtetl-Optimized
Shor, I’ll Do It
Stranger Fruit
Pithecophobes of the World, Unite! Part I, Part II, Part III and Part IV all four fused into a single article.
Update: Thanks to people who have linked to this post and spread the news: Corie Lok, Karen James, Egon Willighagen, Martin Rundkvist, Steve Matheson, Brian Switek, Mike Bergin, RPM, Reed Cartwright, Phil Plait, Shelley Batts, John McKay, Sabine Hossenfelder, Josh Rosenau, Craig McClain, Carl Zimmer, Jennifer Forman Orth, Richard Grant, Grrrlscientist, Afarensis, Steve Higgins, post-doc, Mo, John Lynch, Neil Saunders, Seed Daily Zeitgeist, Edwin Bendyk, Microecos, crazyharp81602, Reed Cartwright (pick up your badges here), Chad Orzel, Carl Feagans, Larry Moran, The Ridger, John Dupuis, Jake Young, Massimo Morelli, Revere, King Aardvark, Grrrlscientist, Brandon, Podblack Cat, Alex Palazzo, Graham Steel, Sciencewoman

New on…

Food:
Where’s the schmaltz? Look no further…
How religious curbs lead to great food (take with a grain of salt….and pepper and garlic).
My mother’s sarma recipe will come shortly…
Drink:
Ask the expert on vodka: Just Like Water, But Better
What are you drinking tonight at midnight? The Friday Fermentable: Champagne and Sparkling Wines for New Year’s
Good news for the liver cirrhosis (and the grapevine genome): Eat, Drink and Be Merry (but Not Too Much)
Books:
Rainbows End by Vernor Vinge (which I have reviewed ealrier this year) is now available, in its entirety, on the Web, for free (thanks Richard Ackerman)
Is There Another Harry Potter Book on the Way?
Golden Compass:
Henry did not like the movie: On Religious Allegory and Talking Animals
Amanda loved the books: Review: His Dark Materials Trilogy
(You may recall my own take on the movie: Golden Compass – it’s about sex, really)
Sports:
Even Gregg Favalora understands American Football better than I do: Exclusive Coverage of Evidently Quite Important Sporting Match
Journalism:
Andy Oram: So when will the job of a technical editor be abolished?
Jay Rosen: Most of them are not ideologically driven; they just want to get on the front page (via Ed Cone).
Chris Bowers: Moderately Lobotomized: The Closing Of The American Pundit’s Mind
Matt Nisbet: Horse Race Coverage & the Political Spectacle
Digby: Bipartisan Zombies
Science, Society and Culture:
The OpenLab 07 anthology entries have been judged and the final 50 (plus a poem and a cartoon) will be revealed here in a couple of days – stay tuned.
Science Is Now… Cool
Global Warming will bring strange diseases to the U.S.: Why “neglected tropical diseases” are going to bite us in the *$&# and Neglected Diseases and Poverty in ‘The Other America’: The Greatest Health Disparity in the United States? kinda go together.
Revisiting my sex predictions for 2007
It’s not that expensive, though I may still prefer to be turned into silage for a tree – The Neptune Memorial Reef .
A strange history of the telephone. And to think that Alexander Graham Bell was a hero to me when I was a kid!
Cool Science News:
A newly-discovered virus is threatening endangered western barred bandicoots. Anne-Marie and Jeremy Bruno comment.
Brian Switek: Evolution’s Arrow. Long and thoughtful. A must read.
Science 2.0:
Attila: Science.TV joins the club but exactly which? and Matt Thurling on the concept of science.TV
Euan Edie: Open notebook pt1, Open notebook pt2 – question, theories, approach and Open notebook – what’s a disease again?
Presentations from the Publishing in the New Millennium conference at Harvard, are now available as MP3s (and some PDFs) (hat-tip: Peter Suber)
The new journal Neuroethics is really Free Access and not Open Acces in the true sense of the term: New free journal from Springer – but no Open Data
Politics:
The Airport Security Follies and Follies d’Air and Airport Security and Liquid Contraband
Atrios, Matt Stoller and Chris Bowers endorse John Edwards.
A nice article on Steve Gilliard in the NYTimes. Driftglass, Jesse and Amanda comment.
Paul Rosenberg has a series of excellent posts on the Myth of Bipartisanship and Polarization: Martin Luther King and The Moral Imperative For Polarization, The Myth Of A Polarized Public, Collapsing The Ideological Overlap: The Gulf Between Issues and Candidates, Sorting By Party–Polarization By Party Without Polarization of People, Geographic Polarization: Myth Vs. Reality and Elite-Mass Polarization: 30+ Years of Guns Vs. Butter.

Like Ships in the Night

They come and go. The good blogs. Kate has decided to stop posting (but not delete) her magnificient Anterior Commissure. Perhaps it’s because the topic is of interest to me: hormones and behavior, or because the topic is of universal interest – sex, or because of her personality shining through in each post, but this was one of my favourite blogs over the past several months. So, I am sad to see it closed. Perhaps one of her posts will make it into the Open Laboratory 2007 – that would be nice.
I understand she needs to wrap up her studies and get a postdoc. And she is busy with the Science Communication Consortium (and blog). But I hope that some time in the future, not too far away, her life will get less stressful and the blogging bug will bite her again.
At the same time – there is a new cool blog in town. Anna Kushnir, the fun, quirky blogger of Lab Life and Sunday Night Dinner, is now the official Blogmistress of the JoVE Blog, the blog of the Journal of Visualized Experiments. And, judging from the first few posts, this one will be fun to read – worth blogrolling!

New on….

…the intertubes:
Benazir Bhutto (1953-2007)
When tigers cross the walls
Internet trolls really are clueless morons.
Krugman: Progressives, To Arms! Forget about Bush–and the middle ground.
The 2007 Medical Weblog Awards still taking nominations.
First, the neckties, now the sleeves (with no research to support either) but it makes it look like they are doing something.
A little more on anti-science conservatives.

Best Blog Posts of 2007 (Chosen by the Bloggers Themselves)

But only those bloggers found on the blogroll of John Swift. Which is all the blogger that matter, anyway.

A Blog Around The Clock: Year In Review

The year in review meme is too random to really capture the highlights of a year on a blog. So, here is a collection of links that I think mark the most important moments of this blog in the last year:
January (297 posts) was dominated by the science blogging anthology and the science blogging conference, so it was filled mostly with re-posts of the old stuff, quick links and only a couple of science posts. This was also the time when my name first appeared in the media. This is also the time when I started writing more about Open Science. All of this combined resulted in a large and permanent rise in traffic.
February (245 posts) started with a push for funding of the Beagle Project. This was followed by the saga of Amanda and Melissa getting hired and then having to quit as blogmasters for Edwards. And much more politics. Among the myriads of quotes, reposts and quick links, I also wrote several science posts, including three popular ones: Sex On The (Dreaming) Brain, The Lark-Mouse and the Prometheus-Mouse and Lesson of the Day: Circadian Clocks are HARD to shift!.
In March (229 posts) we started early with the organization of the 2nd Science blogging conference and anthology. I wrote about blogging, about open science, about science education, about recent Balkan history, about the Belgrade Zoo, about religion and still a lot about U.S. politics. I put together a google-bombing Michael Egnor linkfest and a CoulterFest. And I wrote a bunch of brief science posts, as well as one or two longer ones, including Cortisol necessary for circadian rhythm of cell division and Evo-Devo: what new animal models should we pick?.
In April (191 posts), there was a famous kerfuffle about fair use of images in science blogging. And then, even more famous blogospheric debate on Framing Science for which I wrote something like ten posts (included in that linkfest). And lots and lots of fun little posts. But April is special because that is when I posted not my most popular but my most famous blog post ever – this one – and what made it famous is not what I wrote, but this comment and the chain of events it precipitated.
In May (210 posts), after going to San Francisco for the interview, I got the job! I got invited to scifoo. Some early influences and a deeply personal post. The Framing Science debate continues. Interesting comment thread on recent Balkan history. More on science education. We celebrated Linneaus’ 300th birthday. A paper came out suggesting Viagra as a treatment for jet-lag and I poked holes in it. Some other papers were better, so check out my takes on them: A Pacemaker is a Network and Flirting under Moonlight on a Hot Summer Night, or, The Secret Night-Life of Fruitflies.
In June (222 posts) I got a new cat. A rare post on religion. Why are dinosaur fossils’ heads turned up and back? Everything important cycles. A longish post on Science 2.0 and one on sociology of social networks. The power of name. Scientists vs. science journalists. And again. Welcoming the Nature Precedings.
I spent most of July (275 posts) in San Francisco. Busy with the new job and exploring this cool city, I mostly scheduled re-posts of the best old science posts. I got a new laptop. While I was there, PLoS ONE introduced ratings. My brother went to Belgrade and got my Mom a new computer and cable internet so she could read my blog and post comments. Still, I managed to review Rainbows End and, related to it, Facebook. Science envy. Posted the exclusive science interview with John Edwards. I did a lot of photoblogging in July – see this, this, this, this, this, this, this, this, this, this, this, this, this, this, this, this, this, this, this and this (and those are not all!) where you can see cool people I met and interesting places I went. Oh, I did write a science post, too: The Amplitude Problem.
In August (200 posts) it was time to leave San Francisco, over beer with friends, of course. And then, go to the amazing Science Foo Camp (where, among other things, I got served lunch by Martha Stewart) – see, for instance, my coverage here, here, here, here and, after I got home, here and a final, long wrap-up here – an absolutely amazing experience! So, I got home and moved into my new office and got back into the North Carolina blogworld. Then, it was time to go to NYC for the big SciBling meetup, where I took a lot of pictures and posted them (so you can see how sciencebloggers look like) here, here, here, here, here, here and here (the famous karaoke bar). Blogging after that was pretty quick-and-dirty, with just an occasional foray into serious writing, for instance, What is an Author? And then, it was time to debunk and defeat PRISM.
September (183 posts): false journalistic balance. An internet joke that brought in tons of traffic from social networking sites. Discovered the Zoo School. And some thoughts on textbooks. Rethinking FOXP2. You can send trackbacks to PLoS ONE papers. A great croc paper by Steve Irwin. The big blogging event was a combo of scienceblogging and foodblogging. After getting tagged by others a million times, I decided to start a new meme. The call to Senate to approve the NIH bill was successul. Oxytocin and childbirth. Running, breathing and being a horse.
October (231 posts) was a month of intense travel. I gave a presentation at UNC, then I led a session at ConvergeSouth in Greensboro and a few days later was a part of a panel at the ASIS&T conference in Milwaukee, and then I had a poster in Second Life. PLoS announced its new journal. Sciencebloggers raked in a ton of money for science education through DonorsChoose. There is no soul. The organization of the Science Blogging Conference is heating up. Reintroducing Journal Clubs on PLoS ONE papers. A global slant to Nobel Prizes. Senate passes the NIH bill (Bush vetoes it, but the OA language remains intact). Blogging on Peer-Reviewed Research (BPR3) gets started.
November (170 posts) started with the surprise visit by the PLoS ONE managing editor. Then I wrote a serious post about authorship on scientific papers. But the big event was the trip to Boston/Cambridge MA for a panel at Harvard. See my coverage here, here and here. And right after that, I had a lot of work to do in preparation for the publication of the Nigersaurus paper and the subsequent media attention. Locally, we had a wineblogging meetup and a meeting with Rep. Brad Miller. SAGE ventures into Open Access. Has the word “gene” outlived its usefulness? Shift Work labeled as a Probable Cause of Cancer.
December (184 posts so far) – so, have you hugged your horse today? My tour-de-force post, possibly the best post of the year: The Scientific Paper: past, present and probable future. A feminist/Freudian tongue-in-cheek review of the Golden Compass. The big push to get the Presidential candidates to agree to a Science Debate. For this, I posted some of my own potential debate questions: 1, 2, 3, 4, 5 and 6. The Lab Website awards have been announced. PLoS ONE is one year old. All the entries for the Open Lab 2007 are now available for everyone to see. There are at least six species of giraffe, not just one. Hanukkah was good to us – I got a new camera, and my wife and daughter got an XO laptop each. My Mom went to Israel for a conference and is guest-blogging about it – see the part I and part II so far.
Enough links here to fill the rest of your holidays?

2007 Scienceblogs year in review

If you go to the Scienceblogs.com homepage you will see something like this:
SB%20homepage.jpg
Click on it (let your Firefox allow pop-ups on this site) and play. See the timeline of what happened in science and on scienceblogs during 2007. I am not sure how it works, but I think that the content will change over time (it will be up for the duration of the holidays) so you may have to check it out again and again.

Keep up with us!

Tim, the Tech guru of Scienceblogs.com, has done something nice for you again, just in time for the holidays. He has made a widget that you can place on your blog, Facebook profile, LiveJournal or wherever you want, that shows the last five Sb posts in real time, just like this:
widget.JPG
If you like the idea and want to install this widget which will bring even more traffic to frequent posters like me, go and pick up the code here.

Open Lab 2007 – all the entries are now in!

It is midnight, and the deadline for submission of blog posts for the 2nd Science Blogging Anthology is over. We have recieved 468 entries (after deleting spam – the total was 501) and a jury of 30+ judges has already started reading and grading the entries. We truly believe that we will have the book ready and printed by the time the 2nd Science Blogging Conference starts, on January 18th-19th, so both the participants and you at home will be able to order your copy at that time.
A little later, I will post the links to all of the 468 entries so everyone can see them (and I will not hide them under the fold like I did last time) – expert commentary on the entries posted in the comments of that big linkfest will be appreciated by the judges.

New on….

Well, just too busy for something original, so it’s time for a little linkfest of notable stuff I saw in the blogosphere over the past couple of days:
Carl, Brian, Anne-Marie and PZ report on the Indohyus, a close relative of the whales that lived 48 million years ago in Kashmir.
Barbara Sahakian and Sharon Morein-Zamir wrote a provocative commentary about the mind-enhancing drugs – would you use them or not? A discussion is ongoing on Nature Network. Shelley, Janet, Anne-Marie, Vaughan and PZ offer some quite different answers. I think that these drugs, especially as they get perfected and their mode of action better understood, will become ubiqutous and a normal part of life, like wearing glasses, getting a pacemaker, or having a cup of coffee in the morning. Jonathan provides another example.
Hyenas. Loved by Anne-Marie.
Science Commons announces Protocol for Implementing Open Access Data. They have started a new blog just to cover this. Peter Suber and Deepak Singh comment.
Popular Mechanics has a summary of all the Presidential candidates’ statements regarding the environment. Greg and PZ comment.
Another anecdote from a peer reviewer: an inside view on the peer review.
Ben Goldacre finds an incredibly silly paper.
Apparently, the vaunted Impact Factor is calculated by hand-waiving and an Ouija board.
Amanda notes why “sustainability” is a word that is losing its meaning. Pigs. Capitalist pigs. Literally.
Mark Chu-Carroll gives the best explanation of the current mortgage/housing crisis – bad math and “free-rein, free-market capitalism” gone berserk.
Echidne comments on the latest Paul Krugman column in the NYTimes. Krugman also wrote something similar on his blog. Which is very similar to something I wrote back in February. And something I wrote back in 2004 (note the prescient last sentence). Warren Buffett and Tim O’Reilly don’t get it. It is all about the Overton Window. Glenn Greenwald and Digby explain it even better. And Sara groks it the best of them all. And Tim also misunderstands the term “nurturant parent” and mixes it up with the ‘permissive parent’.
I like my beauty sleep to much to wake up in the middle of the night on a Saturday, but if you are up to it, go ahead and participate in the 2nd annual Global Orgasm For Peace on December 22nd at 6:08GMT. Unfortunately, this otherwise cheerful event is marred with the pseudoscientific New-Agey quasy-explanation:

The Global Consciousness Project, located in Princeton, New Jersey, runs a network of Random Event Generators around the world which record changes in their randomness during global events. The results show that human consciousness can be measured to have a global effect on matter and energy during widely-watched events such as the collapse of the World Trade Center towers, large antiwar protests, natural catastrophes, acts of war and mass meditations. Concentrated consciousness has measurable effects.
Our minds influence Matter and Quantum Energy fields, so by concentrating our thoughts during and after The Big O on peace and partnership, the combination of high orgasmic energy combined with mindful intention for peace could reduce global levels of violence, hatred and fear.
The world is full of men with axes to grind and weapons to fire in displays of their superiority over others. It is time to spare the planet from Alpha Male concepts of ‘progress’, ‘growth’ and Manifest Destiny, which are endangering all of us. True partnership between the Masculine and Feminine that is within all women and men may enable our species to survive in relative harmony. The Global Orgasm for Peace is one attempt to begin that process.

Orac and PZ made fun of it last year and Greg did it this year. There is an alternative that does not need to use pseudoscientific woo, though, but may be in danger of commercialization. What’s wrong with every day? At least once?
How politics is done in Ivory Coast: tymberwolf reports from the ground (hat-tip: Ruby):

Evidently, according to Bita (my counterpart intern), TODAY the President of Cote d’Ivoire sent a death squad to the parents of the Ivorian Assembly President. What seems to have happened was that President Gbobo impregnated the daughter of the Assembly President (same party) twice. The first time, the pregnancy was aborted.
So. The President went to the house of the AP and slapped his wife. In response, the AP went to the house of the President and slapped the first lady. Or something like that. So basically the AP is now in exile in Ghana.
This all happened just now. Evidently, had the AP been in an opposing party, war would have already broken out.

Best Lab Website Awards

Attila had the idea for a contest for a best designed, prettiest and most functional laboratory website. I picked up on it and posted about it on my blog.
The idea took off and the contest was hosted by The Scientist. And again, I blogged about it. Anton saw my post, and told Karl about it. Karl went on and nominated the website of the Purves lab.
Attila was one of the judges, of course. The results are now in and the winners have been announced – the Purves lab won the Editor’s Choice award and one of the Judges’ award. Nyborg Lab won the Readers’ award. Attila gave his award to the Redfield Lab. Check out the other winners here. See all the nominated websites here.

The Meme Of Memes!

Matt and Mrs.Whatsit tagged me with the 7-meme and 8-meme and I have been struggling with the ideas as to how to respond. I am usually a sucker for memes. I always do them. But there is nothing – weird or not – about myself that I have not already mentioned on this blog at one point or another (except things that I will never say, as I do not want to endanger my job, my marriage, or my good relationships with the family, in-laws, neighbors, friends and colleagues). So, instead, I will challenge you: have you done more memes than I did in your blogging career? List them all. Here are mine:
Learn more basic stuff about me from the 4 meme
Learn even more about me from The Eight Random Facts Meme
Learn even, even more about me from the Eight Random Facts Meme, Take 2
Learn even, even, even more about me in the Meme of Four (again)
Learn more silly factoids about me in The Dirty Thirty Meme
Learn even more silly factoids about me in Seven Times Seven Meme
Learn more about what I think as to who might qualify as a scientist rock-star in the Scientist Rock Star meme
Learn more about my incredible library from the My Oldest Book(s) Meme
Learn more about my taste in books from the Book meme
Learn even more about my taste in books from The Book Meme
Learn even, even more about my taste in books from Another Book Meme!
Oh, and also Science Books from my Childhood meme.
I’ve been traveling a lot lately, so I need to update the States Meme
Learn more about my work history in the Four Jobs Meme
Learn more about the quotes I like from the Random Quotes Meme
Learn more about my thoughts on blogging at the Blogging Blog Meme
Learn even more about my thoughts on blogging from the Why Do You Blog Meme
I did the Year In Review meme twice, in 2006 and in 2007.
This year I missed it, but last year I did the Hanukah meme
The Thinking Blogger is kind of a meme as well.
Learn more about my favorite animals from the Cool Animal Meme
Learn more about my favourite birds in the Beauty: Not Just Feather-Deep meme.
Learn more about my tastes in movies/music/books from the Pharyngula mutating genre meme
And there are even more movies in the Obscure-but-Good Movies meme.
Learn more about my blog-fu from the I rank number one on Google meme!!
Learn more about my taste in monster movies from the Happy HalloMeme!
I participated in the Memetree experiment.
This is an old one – the 23-5 meme
And this one is silly: Zero meme
And so is this one – Browser Meme
While the Academic Blog Survey is dead serious.
I think that’s all. At least all I could find. Have fun. See if you can beat my record (well, just do them all plus one).

Year In Review Meme

Janet, John and I did this last year. Now John is reminding us again and I hope more people pick it up as it is quite fun to do. The idea is to link back to your first post of each month of the year and to copy and paste the first sentence of each of those posts. Let’s see if it is all ClockQuotes for me this year, as I tend to schedule them at 4am, so they are likely to be first posts of the day, thus also of the month – I tend to post substantive stuff around noon. Just check all the months’ archives and browse the titles that are interesting to you (2555 posts so far this year!):
January
If we take care of the moments, the years will take care of themselves.
February
Four Stone Hearth #8 is up on Northstate Science.
March
Time is the image of eternity.
April
I love sleep.
May
In a large proportion of the surface of our planet, people are not supposed to go to work today.
June
The season of failure is the best time for sowing the seeds of success.
July
OK, I have scheduled to repost automatically some of the best clock-related posts.
August
Flip Of Genetic Switch Causes Cancers In Mice To Self-destruct: Killing cancerous tumors isn’t easy, as anyone who has suffered through chemotherapy can attest.
September
Late last night we opened the registration for the 2nd Science Blogging Conference, to be held on January 19th, 2008 on the Sigma Xi campus (publishers of ‘American Scientist’) in the Research Triangle Park which is officially on the territory of Durham, NC.
October
In a time of drastic change it is the learners who inherit the future.
November
To do nothing is sometimes a good remedy.
December
Whenever you find yourself on the side of the majority, it’s time to pause and reflect.
Now you do it.

Update:
Janet did it again. And Anne-Marie and Afarensis did it as well.

Scienceblogs.com in Klingon? What’s next?

Now that Seed scienceblogs are taking over the world, one language at a time, the overlords are asking: which language to conquer next? That’s a poll which you should go and take. But my thoughts first:
Some languages have few or no science blogs. Others have many but are a a closed community, only reading/linking/blogrolling each other. Others may have many, but they barely know each other and are not a community (yet). Others, though they share the language, stick to each other along national lines without much cross-over. Others crave international audience and write some or all of their content in (semi-broken) English. Should Seed go next to a market that is most ripe for the picking, or the one where they can make the greatest impact?
We are here in the USA where Spanish is the #1 foreign language, it is the mother tongue for many citizen’s, and if you look south, there is an entire neighboring continent full of Spanish-speaking people (and yes, a bunch of Portuguese language people as well, I know). From an American perspective, Spanish as the next language for scienceblogs is a no-brainer.
But, if you live in Europe, Spanish language is, let’s say, the top of the second tier of languages, behind English, German, French, Russian and Italian. If you live in Eastern Asia, in Russia, in the Middle East or in Africa, your perception of what language is the most important will be different as well.
If I think of foreign-language blogs that linked to me over the years, I barely remember any Spanish-language blogs that did so. But I remember quite a few in Portuguese and Russian (OK, also in Slovenian and Serbian, but that is my own ‘niche’ in a sense, not reflecting any kind of reality). I know one French blog, half of the posts of which are written in English. Recently, the most science blogging I see outside of English and German is in Italian – they are hot about it and keep linking to me and e-mailing me, etc – I will be going to Trieste in April to talk to them, etc. so it appears to me that theirs is the fastest-rising, most excited science blogosphere that wants to get international recognition – they may be the best organized and most receptive if Seed wants to offer a deal. Who knows what Russians or Chinese or Japanese are doing and what they think?
So, to summarize….
If the target is the language spoken by most people in the world, regardless of their Internet access – pick Chinese.
If the target is the language used by most blogs in the world, regardless of the way they are used and if they have science content – pick Korean.
If the target is the language understood, at least superficially, by most Americans – pick Spanish.
If the target is the language understood, behind English and German, by most Europeans – pick French (but beware that Science! on blogue already exists – do scienceblogs want to compete or open new markets?)
If the target is the language in a different, non-Western part of the world that is chock-full of scientists and science bloggers not known outside their region – pick Russian.
If the target is the language that already has a thriving science blogging community that is craving international recognition and will be receptive to Sb advances the most – pick Italian.
Now go and vote and voice your own opinion.

Scienceblogs.com in Germany

If you can read German language and you are interested in science, you will be happy to know that our sister-site, Scienceblogs.de is now live! It looks and feels similar to us, and they have lured in several of the best German-language bloggers. The collaboration between the two sites will continue (hey, wanna translate some of their best posts?) and Page 3.14 has all the details. Which language is next? We are taking over the world, once language at a time!