New and Exciting from PLoS Biology

My picks for today:
Segregation of Odor Identity and Intensity during Odor Discrimination in Drosophila Mushroom Body:

Considerable progress has been made in understanding how olfaction works as the receptor proteins, sensory neurons, and brain circuitry responsible have become increasingly well-characterized. However, olfactory processing in higher brain centers, where neuronal activity is assembled into the perception of odor quality, is poorly understood. Here, we have addressed how the mushroom body (MB)–a secondary olfactory center–is involved in olfactory discrimination. We manipulated the MB by ablation, disruption of synaptic transmission, and interruption of key cellular signaling molecules in naïve flies and in flies trained to discriminate odors. We first show that although both odor identity and intensity are encoded in the MB, only the former requires Gαq-dependent signaling and is necessary for naïve flies to spontaneously discriminate different odors. We then show that training flies to alter their olfactory response requires Gαs-mediated signaling in MB for both odor intensity and odor identity. We have thus identified (i) segregation of odor identity and odor intensity at the MB level in naïve flies and (ii) different G-protein-dependent signaling pathways for spontaneous versus experience-dependent olfactory discrimination.

Viral Evolution in the Genomic Age:

Genome sequence data will undoubtedly deliver much to the study of viral pathogens and their diseases. A prominent example of this new genomic perspective is influenza A virus, for which a large-scale genome sequencing project begun in the year 2005 has, to date, generated around 2,500 complete viral genomes [1]. While this alone is newsworthy, the rise of rapid, high-throughput genome “pyrosequencing” promises to take the production of viral genomes to a level once unimaginable [2].

Pedagogical Faultlines

Danica gave a presentation at the Waag Society conference in Amsterdam on new concepts and ideas of learning. She put up a wiki and her slides (worth checking out):

The focus of this event was on the theme of challenges in contemporary pedagogy, including the use of new media tools, but also exploring institutional and cultural issues.

ClockQuotes

The best time to hold your tongue is the time you feel you must say something or bust.
– Josh Billings

Science Blogging article in BlueSci

Back in March or early April, I was interviewed for an article on Science Blogging for BlueSci, the Cambridge University’s popular science magazine, produced by students there. The issue is now out and the article by Mica Tatalovic based on that interview is very good. You should read the entire issue, of course (I liked the review of the current knowledge of kisspeptin, for instance), but if you want to read the Science Blogging article, you will have to scroll down to pages 30 and 31 of the PDF. Enjoy the cartoons drawn for the article as well – we may have to use this one for advertising the Science Blogging Conference, methinks:
I%20Blog%20You.JPG

My Picks from ScienceDaily

Saber-toothed Cat Was More Like A Pussycat Than A Tiger:

In public imagination, the sabre-toothed cat Smilodon ranks alongside Tyrannosaurus rex as the ultimate killing machine. Powerfully built, with upper canines like knives, Smilodon was a fearsome predator of Ice-Age America’s lost giants. For more than 150 years, scientists have debated how this iconic predator used its ferocious fangs to kill its prey. Now a new Australian study, published recently in the US Proceedings of the National Academy of Science, hopes to lay the arguments to rest. And the results will put in dent in Smilodon’s reputation.

Thriving Hybrid Salamanders Contradict Common Wisdom:

A new UC Davis study not only has important findings for the future of California tiger salamanders, but also contradicts prevailing scientific thought about what happens when animal species interbreed.

Three-way Mating Game Of North American Lizard Found In Distant European Relative:

An intricate three-way mating struggle first observed in a species of North American lizard has been discovered in a distant relative, the European common lizard. The two species are separated by 5,000 miles and 175 million years of evolution, yet they share behavioral and reproductive details right down to the gaudy colors of the males, according to new research published in the November issue of American Naturalist.

Saving Microscopic Threatened Species:

The Smithsonian’s National Zoo recently acquired 12,000 new animals–microscopic Elkhorn coral larvae harvested by National Zoo scientists in Puerto Rico–as part of an international collaborative program to raise the threatened species. National Zoo scientists hope to one day return the animals, once they are grown, to their wild ocean habitat.

Saltwater Crocodiles Can Find Their Way Home:

Three crocodiles relocated from their homes in Far North Queensland have been tracked swimming between 10 and 30 kilometres per day according to a collaborative research project by The University of Queensland, Australia Zoo and Queensland Parks and Wildlife Service.
————-
The results highlighted the success of satellite tracking for crocodiles allowing continuous tracking without human interference.
Professor Franklin said “Satellite technology is a great way of tracking these really cryptic animals which are difficult to follow.
“The success of the study was also recognition of the skills and knowledge that Steve Irwin brought to the project.”
He said Steve Irwin was a major driving force behind the study, and his intellectual and logistical support complimented the knowledge, experience and contributions made by the other team members.
“He also gave us the assistance of the croc team from Australia Zoo, who are highly skilled in the capture and care of crocodiles.”
All three monitored crocodiles were moved by helicopter between 52 and 130 kilometres away but still found their way back to their capture sites. One crocodile was flown across Cape York Peninsula from the west to east coast, and then circumnavigated the peninsula to return home.
He said crocodiles probably used many factors such as its position to the sun, magnetic fields, sight, and smell to navigate.

Half A Mil

You did it! Earlier today, somebody on Scienceblogs.com posted the 500,000th comment. It will take a few days for our Seed Overlords to check the counter, contact the winners and make the big announcement. In the meantime, as PZ says, You are encouraged to go on commenting to run the tally up to a million.
And, you can enjoy a randomly rotating selection of cool comments on the Scienceblogs.com front page. I know, I know, nobody ever asked me to fertilize their eggs (not that Mrs.Coturnix would approve), but one of the rotating comments is the historical one here:
Chris%20comment%20screenshot.JPG
PLoS is quite proud of it – you can see this screenshot was already posted in the photo album of the PLoS Facebook group.

Today’s Carnivals

Carnival of the Blue #5 is up on Shifting Baselines.
Boneyard #3 is up on Fish Feet.

Science 2.0 at SILS

Yes, I’ll be there this Friday. Come by and say Hello if you are in the building or close at lunchtime.

Help science teachers in poor schools through DonorsChoose

Perhaps you remember June last year when a bunch of us sciencebloggers held a fund drive for science education through DonorsChoose.
Well, we are doing it again this year, more of us, and for a longer period of time – throughout the month of October. As was the case last year, the central information place is Janet’s blog and she has just posted all the details so go and take a look.
You can check out all the projects picked by my SciBlings here and my own here. You can get to my pledge also by clicking on the thermometer on my sidebar (scroll down a little bit) and watch how the mercury in all of our thermometers rise over time. So far, I have picked only a few projects for poor schools in North Carolina. But, if you are fast and we reach our goal too soon, I will add more projects to the pledge, including those in other states.
<!– –>


Janet explains:

This year, the challenge runs for the entire month of October. A number of ScienceBloggers have already put together challenges. Here’s who’s in so far:
A Blog Around the Clock (challenge here)
Adventures in Ethics and Science (challenge here)
Aetiology (challenge here)
Cognitive Daily (challenge here)
Deep Sea News (challenge here)
Evolgen (challenge here)
Gene Expression (challenge here)
Omni Brain (challenge here)
On Being a Scientist and a Woman (challenge here)
The Questionable Authority (challenge here)
Retrospectacle (challenge here)
The Scientific Activist (challenge here)
Stranger Fruit (challenge here)
Terra Sigillata (challenge here)
Thoughts From Kansas (challenge here)
Thus Spake Zuska (challenge here)
Uncertain Principles (challenge here)
How It Works:
Follow the links above to the DonorsChoose website.
Pick a project from the slate the blogger has selected (or more than one project, if you just can’t choose).
Donate.
(If you’re the loyal reader of multiple participating blogs and you don’t want to play favorites, you can, of course, donate to multiple challenges!)
DonorsChoose will send you a confirmation email. Hold onto it; our benevolent overlords at Seed will be randomly selecting some donors to receive nifty prizes. Details about the prizes and how to get entered will be posted here soon!
Sit back and watch the little donation thermometers inch towards 100 percent, and check the ScienceBlogs leaderboard to see how many students will be impacted by your generosity.

Pledge of Allegiance

If anyone shows this to my son, he’ll lead a revolution. Like those wonderful, patriotic, thinking students at Boulder High School, who penned their own, most excellent version of the Pledge of Allegiance:

I pledge allegiance to the flag and my constitutional rights with which it comes. And to the diversity, in which our nation stands, one nation, part of one planet, with liberty, freedom, choice and justice for all.

Kudos to them! Watch the movie:

My Picks from ScienceDaily

Sea Otter, Peregrine Falcon Back From The Brink Of Extinction But Other Species At Risk In Canada:

There’s good news and bad news in the report the Committee on the Status of Endangered Wildlife in Canada (COSEWIC) just dropped on the Minister of the Environment’s desk.

Chesapeake Bay’s Habitats Threatened By Global Warming:

A new report on the impact of global warming on the Chesapeake Bay calls for a major shift in how land is managed in the bay to protect the nation’s most prized hunting and fishing grounds.

Surprise In The Organic Orchard — A Healthier Worm In The Apple:

Insects can catch more than a cold from certain viruses. Some viruses can be lethal to pest species – turning their insides to soup – without harming beneficial insects or other organisms. Hence they are used as an environmentally friendly means of biological crop protection worldwide. The proverbial worm in the apple, the codling moth caterpillar, has been controlled in European orchards for years with a baculovirus called codling moth granulovirus (CpGV). But in southwest Germany, some organic apple growers noticed that the virus was losing its effectiveness. Pest resistance to chemical insecticides is common in agriculture, but resistance to viruses had never been a problem in the past.

Going Fishing? Catch-and-release In Less Than Four Minutes, Please:

Recreational fishing that involves catch-and-release may seem like just good fun, and that released fish go on to live happily ever after, but a recent study at the University of Illinois shows that improper handling techniques by anglers can increase the likelihood of released fish being caught by predators.

ClockQuotes

In a time of drastic change it is the learners who inherit the future. The learned usually find themselves equipped to live in a world that no longer exists.
– Eric Hoffer

My Picks from ScienceDaily

Does The Victim Affect Snake Venom Composition?:

A snake’s intended prey might affect the type and evolution of toxins in their venom, research published in BMC Evolutionary Biology shows. In snakes, venom composition varies both between species and within a particular species. Land snakes feed on a range of animals and birds, so scientists think that these snakes need a diverse array of toxins in their venom. Sea snakes, on the other hand, tend to have a more restricted diet, feeding only on fish. The toxins in these snakes have now been shown to be less diverse than those in terrestrial snakes.

Tiny Animals Exposed To Outer Space:

“For the first time ever, animals are now being exposed to an unmitigated space environment, with both vacuum conditions and cosmic radiation,” says the ecologist Ingemar Jönsson, a researcher at Kristianstad University in Sweden. One of the aims of sending the tiny tardigrades into space is to find out whether they can cope with the rugged conditions in space, which has previously been predicted but never tested.

Antarctic Plants And Animal Life Survived Ice Ages:

Springtails, mites, worms and plant life could help solve the mystery of Antarctica’s glacial history according to new research published in the journal Science.

Fish Diet Linked To Evolution, Ten Million Year Old Chipped Teeth Show:

Chips from 10 million years ago have revealed new insights into fish diets and their influence on fish evolution, according to new research featured in this week’s issue of the journal Science. The chips were found, along with scratches, on the teeth of fossil stickleback fish and reveal for the first time how changes in the way an animal feeds control its evolution over thousands of years.

Does Your Mood Take A Nosedive Each November?:

If you notice that your mood, energy level and motivation take a nosedive each November only to return to normal in April, you may have Seasonal Affective Disorder (SAD), according to Loyola University Health System doctors.

Hormone-driven Effects On Eating, Stress Mediated By Same Brain Region:

A hormone system linked to reducing food consumption appears to do so by increasing stress-related behaviors, according to a new study. Mediated by a hormone receptor protein known as the corticotropin-releasing factor type 2 (CRF2) receptor, the system has attracted recent interest for its role in regulating food intake, say Vaishali Bakshi and Ned Kalin, professors in the Department of Psychiatry at the University of Wisconsin-Madison School of Medicine and Public Health.

Program Provides Blueprint For Recruiting Minorities To Science And Engineering:

The Model Institutions for Excellence Program (MIE) funded by the National Science Foundation (NSF) and the National Aeronautics and Space Administration (NASA) has developed a body of work over the past 11 years demonstrating successful strategies for recruiting underrepresented minority students to science and engineering fields and supporting their successful completion of science degrees.

Babies Raised In Bilingual Homes Learn New Words Differently Than Infants Learning One Language:

Research on the learning process for acquiring two languages from birth found differences in how bilingual babies learned words compared to monolingual babies. The research suggests that bilingual babies follow a slightly different pattern when using detailed sound information to learn differences between words.

ClockQuotes

It is time I stepped aside for a less experienced and less able man.
– Professor Scott Elledge

Blogrolling for Today

The Stem Cell Geek


truCubed.com


McBlawg


Ruhlman


365 Cheeses


VarmintBites


Blackwood Eats

Help schools through DonorsChoose, courtesy of Six Apart.

Janet and Abel alert me that Six Apart (yup, those folks who made MoveableType on which I am typing right now) are supporting DonorsChoose, by issuing a bloggers challenge: “You can request a gift certificate worth $30 at donorschoose@sixapart.com. Request your code now — they’re available until noon on Monday.” What a great way to support good teachers and their students, especially in poor schools.

LOLTesla

LOLTesla.jpg
From here (hat-tip).

My picks from ScienceDaily

Altruism Evolved From Maternal Behavior, Wasp Genetics Study Suggests:

Researchers at the University of Illinois have used an innovative approach to reveal the molecular basis of altruistic behavior in wasps. The research team focused on the expression of behavior-related genes in Polistes metricus paper wasps, a species for which little genetic data was available when the study was begun. Like honey bee workers, wasp workers give up their reproductive capabilities and focus entirely on nurturing their larval siblings, a practice that seems to defy the Darwinian prediction that a successful organism strives, above all else, to reproduce itself. Such behaviors are indicative of a eusocial society, in which some individuals lose, or sacrifice, their reproductive functions and instead work to benefit the larger group.

City Birds Better Than Rural Species In Coping With Human Disruption:

Birds that hang out in large urban areas seem to have a marked advantage over their rural cousins — they are adaptable enough to survive in a much larger range of conditions.

Crabs Prefer A Take-out Meal:

Shore crabs (Carcinus maenas) catch their food at food-rich spots and subsequently eat it elsewhere. With this take-out strategy the crabs maximise their food uptake and keep competing crabs at a distance, says Dutch researcher Isabel Smallegange.

Is There Any Validity To The So-called 5-second Rule?:

If a piece of toast fell on the floor, would you pick it up and eat it? You probably would if you believe in the 5-second rule, which suggests that your spilled breakfast stays germ-free as long as you snatch it up in five seconds.

ClockQuotes

The most dangerous words in the English language are, “This time it’s different.”
– Sir John Templeton

New on PLoS today!

Lots of new stuff on PLoS today. So, let’s go over it one by one.
First, today is the inaugural day of the Clinical Trials Hub, central place for all the papers reporting on clinical trials and discussions of them, hosted on TOPAZ platform (just like PLoS ONE) so users can comment, rate and annotate all the papers (and links from blog posts will show up as trackbacks). Emma Veitch has all the details.
Second, the Trackbacks are now working for some, but not all blogging platforms, as long as the correct URL of the article is used. Links from Drupal blogs form automatically. For MoveableType (at least more recent versions) and WordPress blogs, it is necessary to input the correct trackback URL into the appropriate field. We are assuming that other high-end platforms (e.g., Text Pattern, Scoop, Expression Engine, Typepad, etc.) will work the same way and I would like to know if that is true or if there are glitches with any of them. The lower-end platforms (e.g., Blogspot, LiveJournal, etc.) apparently are incapable of sending trackbacks at this point in time.
The PLoS Medicine team has taken to blogging like fish to water – already three posts this week:
Setting better standards in reporting – and doing – animal research by Virginia Barbour;
Should patients tell researchers what to do? by Paul Chinnock; and
Nominate classic trials in child health by Gavin Yamey.
Encourage them in this endeavor by posting comments (they will not immediately show up on the site, but don’t despair, they will eventually).
Finally, there are new papers published today in the Community Journals: PLoS Genetics, PLoS Computational Biology and PLoS Pathogens. My picks:
What Are Lightness Illusions and Why Do We See Them?, Developing Computational Biology, The Impact of PLoS Pathogens and Genetics of Aging in Caenorhabditis elegans.
Oh, and someone really, really likes the design of PLoS ONE pages. 😉

Running, breathing and being a horse

Yesterday, Chris Clarke wrote a post that I read three times so far, then finally submitted it myself for Reed’s consideration for the anthology. Most science bloggers are excellent writers, but rare is the gift that Chris displays in many a post, of weaving many threads into a coherent story that is also gripping and exciting – even when he writes about stuff like respiratory physiology, something that usually puts students to sleep in the classroom. But add a dash of evolution, a cool movie, some dinosaurs, and a personal experience and suddenly the story comes alive for the reader.
This was started as a comment on his blog, but it got long so I decided to put it here instead. You need to read his post in order to understand what in Earth I am talking about.
Human, like a horse.
First, I used to run a lot when I was in middle/high school. My favourite distances were 800m and 1500m and I usually held the school record and came in the top 10 in my age group for the city of Belgrade (pop. 2 mil.). Sure, I am lightweight and have ling legs, but I attributed my success to breathing – in exactly the same way Chris describes: 4 steps to inhale, 4 steps to exhale to begin with, then reducing it to 3, 2 or even 1 step for each inhalation and exhalation as I am approaching the finish line (or on an uphill). I was also breathing very loudly – sounding almost like a horse. And I actually imagined being a horse when I ran – a little imagery helps squeeze those last ounces of energy out of painful muscles in the end.
Horse, like a human.
Back in 1989 or so, I rode a champion sprinter racehorse throughout his winter fitness program, which was pretty much miles and miles of trotting around the track as a part of interval training. He was already getting older at the time and skipped two entire racing seasons out in the pasture, so he needed a good fitness program in order to get back on track and face the younger horses. Two decades later, he still holds the national and track records on 1000m and 1300m, going a kilometer well inside a minute. Translation: a damned fast horse! When the spring came and the professional jockeys arrived, it was time for me to give the horse to them to continue with the fast portion of the training. But, the owners wanted to reward my work by letting me, just once, get the feel for the speed. So, I took him out on the track and started in a steady canter around the course. The old campaigner knew just what to do – when we passed the last curve and entered the final stretch he took in one HUGE breath that made his chest almost double in diameter (I almost lost my stirrups at that moment when he suddenly widened) and took off. There was no way I could look forward without goggles – too much wind in my face. That was friggin’ fast! About 60km/h, I reckon, for that short burst of energy. And, during that entire final stretch he did not breath at all – he did it pretty much all on that one large breath plus anaerobic respiration. Chris, in his post, explains why horses do that. Oh, and that summer, the horse devastated his younger buddies by winning the biggest sprint of the year by several lengths, leaving the rest of the field, including that year’s Derby winner, in a cloud of dust. The audience roared as he was always a people’s favourite.
Horse and human, like a centaur.
One of the most important things in riding horses, something I always did and always taught, although it is rarely taught by others or mentioned in books, is the necessity for the rider to breath in sync with the horse’s movement. This is especially important when riding a nervous or spirited young horse who would otherwise explode. When trotting – three steps for inhale, three for exhale. Canter is more complicated. Stopping breathing leads to stiffening of the body which the horse immediately detects and it makes the horse nervous and more liable to stop at a jump or do something dangerous. It is easy to teach the adults to breath. But for the little kids, they forget, or even do not understand exactly what I am asking them to do. So, I made them sing while jumping courses. If you sing you have to breath all the time. You cannot stop breathing. So, Twinkle Twinkle Little Star got many a scared little kid over all the jumps in my classes as breathing relaxed them and gave their ponies confidence to jump.

Today’s Carnivals

The Carnival of Space #22 is up on Wanderingspace
Friday Ark #158 is up on The Modulator

ClockQuotes

Wisdom is the reward you get for a lifetime of listening when you’d have preferred to talk.
– Doug Larson

My picks from ScienceDaily

Cockroaches Are Morons In The Morning, Geniuses In The Evening:

In its ability to learn, the cockroach is a moron in the morning and a genius in the evening. Dramatic daily variations in the cockroach’s learning ability were discovered by a new study performed by Vanderbilt University biologists and published online recently in the Proceedings of the National Academy of Sciences.

DNA Extracted From Woolly Mammoth Hair:

Stephan C. Schuster and Webb Miller of Penn State, working with Thomas Gilbert from Copenhagen and a large international consortium, discovered that hair shafts provide an ideal source of ancient DNA — a better source than bones and muscle for studying the genome sequences of extinct animals. Their research achievement, described in a paper to be published in the journal Science on Sept. 28, includes the sequencing of entire mitochondrial genomes from 10 individual woolly mammoths.

What Protects Us From Sunburn Also Protects Crayfish Against Bacteria:

The production of melanin in our skin helps protect us from the sun’s rays, but it also helps protect invertebrate animals — in their case, by encapsulating attacking fungi and parasites.

Second Extremely Resistant Bacteria Sequenced Is Surprisingly Different From First:

Researchers have completed the whole-genome sequence of Deinococcus geothermalis, which is only the second extremely radiation- and desiccation-resistant bacterium to be sequenced.

How The Zebrafish Gets His Stripe:

Scientists have discovered how the zebrafish (Danio rerio) develops one of its four stripes of pigment cells. Their findings add to the growing list of tasks carried out by an important molecule that is involved in the arrangement of everything from nerve cells to reproductive cells in the developing embryo.

What a Difference a Century Makes

From a reasonable concern for Animal Welfare by Lewis Carroll to the mean and stupid Animal Rightists of today.

How could I resist….

…taking pictures of Marbles and Orange Julius a minute ago – aren’t they sweet?

Continue reading

Oxytocin and Childbirth. Or not.

Blogging on Peer-Reviewed Research

When teaching human or animal physiology, it is very easy to come up with examples of ubiqutous negative feedback loops. On the other hand, there are very few physiological processes that can serve as examples of positive feedback. These include opening of the ion channels during the action potential, the blood clotting cascade, emptying of the urinary bladder, copulation, breastfeeding and childbirth. The last two (and perhaps the last three!) involve the hormone oxytocin. The childbirth, at least in humans, is a canonical example and the standard story goes roughly like this:

When the baby is ready to go out (and there’s no stopping it at this point!), it releases a hormone that triggers the first contraction of the uterus. The contraction of the uterus pushes the baby out a little. That movement of the baby stretches the wall of the uterus. The wall of the uterus contains stretch receptors which send signals to the brain. In response to the signal, the brain (actually the posterior portion of the pituitary gland, which is an outgrowth of the brain) releases hormone oxytocin. Oxytocin gets into the bloodstream and reaches the uterus triggering the next contraction which, in turn, moves the baby which further stretches the wall of the uterus, which results in more release of oxytocin…and so on, until the baby is expelled, when everything returns to normal.

As usual, introductory textbook material lags by a few years (or decades) behind the current state of scientific understanding. And a brand new paper just added a new monkeywrench into the story. Oxytocin in the Circadian Timing of Birth by Jeffrey Roizen, Christina E. Luedke, Erik D. Herzog and Louis J. Muglia was published last Tuesday night and I have been poring over it since then. It is a very short paper, yet there is so much there to think about! Oh, and of course I was going to comment on a paper by Erik Herzog – you knew that was coming! Not just that he is my friend, but he also tends to ask all the questions I consider interesting in my field, including questions I wanted to answer myself while I was still in the lab (so I live vicariously though his papers and blog about every one of them).
Unfortunately, I have not found time yet to write a Clock Tutorial on the fascinating topic of embryonic development of the circadian system in mammals and the transfer of circadian time from mother to fetus – a link to it would have worked wonderfully here – so I’ll have to make shortcuts, but I hope that the gist of the paper will be clear anyway.

Continue reading

A Top-Secret Meeting at the Conspiracy Factory

That is where you will find the 70th Skeptics’ Circle.

My picks from ScienceDaily

Solving A Dragonfly Flight Mystery:

Dragonflies adjust their wing motion while hovering to conserve energy, according to a Cornell University study of the insect’s flight mechanics. The revelation contradicts previous speculation that the change in wing motion served to enhance vertical lift.

Mice Teeth Explain The Troubles With Human Wisdom Teeth:

During evolution, many of a species’ properties are shaped by ecological interactions. This is readily evident in mammalian teeth, whose many features closely reflect what each species eats. However, for a long time scientists have suspected that genetic and developmental interactions may also influence species-specific properties. Now, researchers at the University of Helsinki’s Institute of Biotechnology show how development affects the evolution of teeth, and have devised a simple developmental model to predict aspects of teeth across many species. The results were published in Nature.

Vitamin C Is Essential For Plant Growth:

Scientists from the University of Exeter and Shimane University in Japan have proved for the first time that vitamin C is essential for plant growth. This discovery could have implications for agriculture and for the production of vitamin C dietary supplements.

New Animal And Plant Species Found In Vietnam:

World Wildlife Fund scientists have just announced the discovery of 11 new animal and plant species in a remote area in central Vietnam. They say this underscores the importance of conservation efforts in the ancient tropical forests of the region.

Primate Sperm Competition: Speed Matters:

Researchers at UC San Diego and UC Irvine have found evidence that supports the theory that reproductive competition during the evolution of primate species has occurred at the level of sperm cell motility.

Clever Plants ‘Chat’ Over Their Own Network:

Recent research from Vidi researcher Josef Stuefer at the Radboud University Nijmegen reveals that plants have their own chat systems that they can use to warn each other.

ClockQuotes

No man whose sex life was satisfactory ever became a moral censor.
– Mina Loy

Open Laboratory 2008

Openlab 2007
Now that the registration for the Science Blogging Conference is open, it is time to remind you that the new edition of the Science Blogging Anthology, “Open Laboratory 2007”, is in the works and is accepting your suggestions.
Although the entire process, from the initial idea all the way to having a real book printed and up for sale, took only about a month, the Open Laboratory 2006 was a great success. This year, we have much more time so we hope we will do an even better job of it.
More than 100 entries have come in so far (see under the fold) and we are looking for more. I have read them all and written my annotations about each, while Reed Cartwright is in the process of reading them closely as we speak. In the end, he will be the final aribiter of which 50 posts, plus one poem and one cartoon, will make it into the anthology. Think of me as a ‘series editor’ and Reed as the ‘2007 editor’.
As we are bloggers, we like transparency. As much as the automated submission form makes our lives easy, we decided that it would be best if, like last year, we made the list of entries public. That way, you can all see them, read them, comment about them, and see what is missing and needs to be entered before the deadline comes (December 20th 2007).
Please, use the submission form to enter your submissions (i.e., putting a link in the comments of this post will not do you any good) and pick up the code for the cool badges (like the one on top of this post) here to help us spread the word.
As I wrote earlier:

Clicking on the button will take you to the submission form. Reed and I will get e-mail notification every time there is a new entry and we will read them all and jot down some ‘notes to self’. Since we have ten months to do this, we will not need a jury of 12 bloggers to help us read all the entries, but do not be surprised if we ask you to vet/factcheck/peer-review a post that is in your domain of expertise (and not ours) later in the year.
So, go back to December 20th, 2006 and start looking through your archives as well as archives of your favourite science bloggers and look for real gems – the outstanding posts. Many have been written recently for the “Science Only Week”, or for the “Basic Terms and Concepts” collection.
Try to look for posts that cover as many areas of science blogging as posssible: mathematics, astronomy, cosmology, physics, chemistry, earth science, atmospheric/climate science, marine science, biochemistry, genetics, molecular/cellular/developmental biology, anatomy/physiology, behavior, ecology, paleontology, evolution, psychology, anthropology, archaeology, and/or history of science, philosophy of science, sociology of science, science ethics and rhetorics, science communication and education, the business of science, the Life in Academia (from undergraduate, graduate, postdoc, faculty or administrative perspective), politics of science, science and pseudoscience, science and religion, etc.
Also, try to think of different post formats: essays, personal stories, poems, polemics, fiskings, textbook-style prose, etc. For now, let’s assume that color images cannot make it into the book (I’ll let you know if that changes) and certainly copyrighted (by others) material is a No-No. Posts that are too heavily reliant on multiple links are difficult to turn into hardcopy as well. Otherwise, write and submit stuff and hopefully one of your posts will make it into the Best 50 Science Posts of 2007 and get published!

Under the fold are the entries so far. About half have been submitted by authors, the rest by readers. I hope you don’t need to ask us to remove an entry of yours, but if that is the case (e.g., you intend to include it in your own book), please contact me about it.
Reading all the entries so far will help you think of other posts, yours or others’, that may fit in here. Perhaps a big story of this year is not covered in any of the submissions so far. Perhaps you remember a post which covers a story better than the entry we already have. Have we missed a really popular post that everyone loved and linked to?
Also, if you are an expert in an area and you have BIG problems with one of the entries in your field, please let us know soon so we can send it out for further peer-review. As was the case last year, only English-language posts are eligible. If you have written an awesome post in another language, please make a GOOD translation available before submission.
I will occasionally update this post as new entries keep coming in, so keep coming back every week or so to see what is new. The entries are arranged in alphabetical order of the name of the blog (because all attempts at categorization failed), which makes it easy to get my own out of the way first, and let you go on quickly to see all the really cool writers of the science blogosphere. If a blog has multiple contributors, the author of the submitted post(s) is named in parentheses.

Continue reading

Help make NIH-funded research findings freely available to everyone!

Back in July, the House of Representatives passed a bill that requires all the NIH-funded research to be made freely available to the public within at most 12 months subsequent to publication.
The equivalent bill has passed the Senate Appropriations Committee earlier this summer and will be up for vote in the Senate very soon! In advance of this important vote, The Alliance for Taxpayer Access has issued a Call for action:

As the Senate considers Appropriations measures for the 2008 fiscal year this fall, please take a moment to remind your Senators of your strong support for public access to publicly funded research and – specifically – ensuring the success of the National Institutes of Health (NIH) Public Access Policy by making deposit mandatory for researchers.
Earlier this summer, the House of Representatives passed legislation with language that directs the NIH to make this change (http://www.taxpayeraccess.org/media/release07-0720.html). The Senate Appropriations Committee approved a similar measure (http://www.taxpayeraccess.org/media/release07-0628.html). Now, as the Appropriations process moves forward, it is critically important that our Senators are reminded of the breadth and depth of support for enhanced public access to the results of NIH-funded research. Please take a moment to weigh in with your Senator now.

Read the rest for talking points and the contact information of your Senators, then do your part and contact them! And spread the word – by e-mail, posting on your blog or website, on forums and mailing lists. Let’s get this bill passed this month and thus ensure that taxpayer-funded research is freely available to its funders – the taxpayers.
This needs to be done no later than Friday, September 28, 2007, when the bill is slated to appear in the Senate.

Cool Animal Meme

This was Anton’s idea, at the dinner the other night, but I will get it started here anyway.
An interesting animal I had
I never owned an unusual species of animal. As a little kid I had small turtle named Aeschillus. Later I had two horses, half-brothers, whose names meant the same in two different languages – Meraklija in Serbian and Kefli in Hebrew both mean “one who truly enjoys life and good things in life”. My wife was a better namer of horses – her last one, the one she brought into the marriage, she named Double Helix and his barn nickname was Watson. A cat and a dog also became “mine” through marriage. We had a Love Bird briefly, and some tetras, a couple of great dogs and, of course, the three cats that sometimes grace the pages of this blog: Biscuit, Marbles and Orange Julius. Probably the most interesting animal I had, but could not really claim full ownership of (it was probably owned by someone, but was considered to be communal) was a skewbald Cameroon Pigmy Goat that served as a stall-mate to Meraklija as he was a highly strung Thoroughbred who needed company to calm him down. There were several goats in the barn, each living where needed, no matter who owned the horse in question. One of the goats was not a pigmy, but a normal-sized white goat who had to be milked every dawn and dusk by whoever was feeding the horses that day. So, on Thurdsays – my feeding day – I got to milk the goat and keep the milk for my own consumption if I wanted to.
An interesting animal I ate
Everyone has tried a taste of their lab animal at least once, so yes, I had eaten marinated and fried breasts of Japanese quail once. Delicious! Also, whenever we gelded a colt, I’d take the ‘prize’ home, marinate for a day or two, then everyone from the barn would come over to one of our houses for some great fried horse whitebreads.
An interesting animal in the Museum
George – the ancient python at the Museum of Life Science in Raleigh was everyone’s favourite for many years. Seeing a stuffed dodo is always an emotional moment.
An interesting thing I did with or to an animal
Sure, I did some stuff to my lab animals, e.g, surgeries. That is not such a big deal. More interestingly, I once participated in the Christmas slaughter of three pigs at the farm where I kept my younger horse. It is hard work and makes you really appreciate your food afterwards.
An interesting animal in its natural habitat
Bumping into a snake is always exciting. Deer, possums, raccoons, rabbits, turkey vultures and red-tailed hawks are common around here and not that exciting to see. I once saw an octopus that came too close to the coast, minutes before it was harpooned by the owner of a local seafood restaurant for dinner. Standing in the dark in Florida at the beach and watching a whooperwill on a perch from just a few feet away for almost half an hour was quite a thrill.
OK, let’s get this started. I am tagging:
Anton
Anna
Brian
Anne-Marie
Danica
Chris
Craig
Jeremy
Eric
Update: Responses are coming in fast!
Ted adds another great question: “a favorite literary animal” – mine is Charlotte (no, not Wilbur) from Charlotte’s Web. And most recently Hemi the Mule.
Here are Chris Clarke (and Tigtog who was tagged by Chris) and Brian Switek (aka Laelaps), the fastest out of the gate. Very cool stories – I’ll try to track it into the future, the tagged and the taggees, as much as I can. Oh, I did not know that Kate also rides horses and she also has a question for Spanish-speaking naturalists. And definitely check out the responses by Theriomorph and Julia Heathcote.
Both Eric and his daughter answered in parallel. Oh, I knew Anne-Marie was going to show off some cool animals she encountered in the field!
Jeremy Bruno comes through. And then, there are cool entries by John Dennehy,
Zach Miller and Dita.
Chris Taylor has seen it all. Nanette is not an adventurous eater. Rana insightful as always. Sherwood Harrington is hillarious. Also check responses by Dr. Violet Socks, Timothy Shortell and Flash.
Neil of Microecos divided each question into vertebrate and invertebrate section which is very cool. Also read Helen, Bernice and Foilwoman.
PZ Myers is waxing poetic..and erotic…about fish!
Update 2: Steve put the announcement up on the latest Friday Ark, so now everyone is tagged!
Check out the latest additions:
Will Bairs
Ed Yong
Fresh Brainz
Self-designed Student
Jessica
Jennifer Forman Orth
Dan Rhoads
Mary Ann
Meta and Meta
The Lizard Queen

Blogrolling for Today

Advances in the History of Psychology


SES: Science, Education & Society


Urban Science Adventures!


Feminist undergrad


CarrieBlogKelly

Today’s Carnivals

Four Stone Hearth #24 is up on _Paddy K_
Tangled Bank #89 is up on Aardvarchaeology
The 138th edition of the Carnival of Education is up on Global Citizenship in a Virtual World
Carnival of the Liberals #48 is up on Liberal England
The 91st Carnival of Homeschooling is up on The Voice of Experience

My picks from ScienceDaily

You Can Teach An Old Dog New Tricks — With The Right Diet:

These supplements, acetyl-l-carnitine and alpha lipoic acid, are continuing to be studied in work with humans, and scientists believe they may provide a new approach to the neurodegeneration and cognitive decline common with aging.

Amazon Forest Shows Unexpected Resiliency During Drought:

Drought-stricken regions of the Amazon forest grew particularly vigorously during the 2005 drought, according to new research.

New Species Of Bacteria Feeds On Natural Gas:

A German-American research team of biologists and geochemists has discovered hitherto unknown anaerobic bacteria in marine sediments which need only propane or butane for growth, as recently reported by the scientific journal “Nature.”

Rare Albino Ratfish Has Eerie, Silvery Sheen:

A ghostly, mutant ratfish caught off Whidbey Island in Washington state is the only completely albino fish ever seen by both the curator of the University of Washington’s 7.2 million-specimen fish collection and a fish and wildlife biologist with more than 20 years of sampling fish in Puget Sound.

Could Iron Fertilization Of Oceans Combat Global Warming?:

Several times over the past century, scientists and environmental engineers have proposed spreading slurries of dissolved iron into the oceans in order to “fertilize” the waters and promote vast blooms of marine plants (phytoplankton). Phytoplankton consume carbon dioxide as they grow, and this growth can be stimulated in certain ocean basins by the addition of iron, a necessary micronutrient.

ClockQuotes

Sometimes the road less traveled is less traveled for a reason.
– Jerry Seinfeld

Foodblogging – the Dinner last night

The highlight of this week’s foodblogging event must have been last night’s dinner at Piedmont restaurant in Durham.
Anton has several posts about the events of the past couple of days, including a detailed description (including the menu, and exactly who was there – about 30 people) of the dinner itself. I came a little late (because I always get lost in Durham as the layout of that city always stumps Google Maps), but as soon as I started chatting with the wonderful people there and eating the wonderful food, my mood changed for the better and I really enjoyed the evening (yes, while someone was taking a hub cap off of the wheel of my new car outside).
Michael Ruhlman is a great guy – ha taught me exactly how to serve myself the head cheese, and here is the photographic evidence:
Michael%20Ruhlman%20and%20me.jpg
While Anton’s post lists all the people present, I’ll just mention those I know from before, including Anna Kushnir, my fellow science blogger (and Scifoo camper) who came down from Boston for the occasion, old friends Ruby Sinreich and Brian Russell (happy birthday Brian!) and Rob Zelt. A new friend – Dean McCord!
There are more pictures on Flickr (add your own if you were there and took pictures). But, what do I say about the food? How does one use language to describe taste? I can describe the jovial atmosphere, or hope that someone took pictures of the food as it was presented, but the gustatory experience? That is tough! All I can say is that every bite was a special experience and a special treat to my taste-buds. I ate slowly, paying attention to the taste and texture of the food. Anton has posted the entire menu, and everything was delicious, but the dessert was just amazing – at first sight, it was just a cup filled with crushed ice, mildly colored. But each bite of it took 20 seconds to experience fully, as one taste followed another which followed another, revealing themselves sequentially as the ice melted in the mouth! Totally amazing!
But probably the best part of the evening was seeing Anton fully in his element, savouring every bite, loving every person there, and just being super happy every single moment of the evening! It was worth being there just to see that! Cheers, Anton! And thank you for doing this for all of us!

Marbles and Orange Julius

These were taken the day after the pseudo-move, as soon as the cats came back from a weekend at the vet. Biscuit was hiding, but the other two explored the new environs:
Marbles%20head.jpg
Julius.jpg

Check the NYTimes Election Guide on Climate Change

What all the candidates are saying.

New and Exciting in PLoS ONE

Steve Irwin’s last paper is not the only exciting article to appear on PLoS ONE today – there are 40 more, and here are a few I am excited about – a veritable embarassment of riches! When am I ever going to find time to read them all!
Oxytocin in the Circadian Timing of Birth (hey, it’s by Erik Herzog, so you know I’ll blog about this paper in a separate post later):

Very little is known about the molecular components that determine the timing for birth in mammals. This study compares the timing of births between mice with and without the chemical oxytocin (OT) when exposed to shifts in the light cycle. The results show that OT-deficient mice give birth at random times throughout the light cycle, while mice with OT maintain a normal clustered birth profile, thus suggesting that oxytocin is necessary in the timing of birth.

A Visual Pathway Links Brain Structures Active during Magnetic Compass Orientation in Migratory Birds:

The magnetic compass of migratory birds has been suggested to be light-dependent. Retinal cryptochrome-expressing neurons and a forebrain region, “Cluster N”, show high neuronal activity when night-migratory songbirds perform magnetic compass orientation. By combining neuronal tracing with behavioral experiments leading to sensory-driven gene expression of the neuronal activity marker ZENK during magnetic compass orientation, we demonstrate a functional neuronal connection between the retinal neurons and Cluster N via the visual thalamus. Thus, the two areas of the central nervous system being most active during magnetic compass orientation are part of an ascending visual processing stream, the thalamofugal pathway. Furthermore, Cluster N seems to be a specialized part of the visual wulst. These findings strongly support the hypothesis that migratory birds use their visual system to perceive the reference compass direction of the geomagnetic field and that migratory birds “see” the reference compass direction provided by the geomagnetic field.

Do Individual Females Differ Intrinsically in Their Propensity to Engage in Extra-Pair Copulations?:

While many studies have investigated the occurrence of extra-pair paternity in wild populations of birds, we still know surprisingly little about whether individual females differ intrinsically in their principal readiness to copulate, and to what extent this readiness is affected by male attractiveness.
To address this question I used captive zebra finches (Taeniopygia guttata) as a model system. I first measured female readiness to copulate when courted by a male for the first time in life. Second, I conducted choice-chamber experiments to assess the mating preferences of individual females prior to pair formation. I then paired females socially with a non-desired mate and once they had formed a stable pair bond, I observed the inclination of these females to engage in extra-pair copulations with various males. Females showing a high readiness to copulate when courted by a male for the first time in life were much more likely to engage in extra-pair copulations later in life than others. Male attractiveness, as measured in choice tests, was a useful predictor of whether females engaged in extra-pair copulations with these males, but, surprisingly, the attractiveness of a female’s social partner had no effect on her fidelity. However, it remained unclear what made some males more attractive than others. Contrary to a widespread but rarely tested hypothesis, females did not preferentially copulate with males having a redder beak or singing at a higher rate. Rather it seemed that song rate was a confounding factor in choice-chamber experiments: song attracted the female’s attention but did not increase the male’s attractiveness as a copulation partner.
Intrinsic variation in female readiness to copulate as well as variation in the attractiveness of the extra-pair male but not the social partner decided the outcome of extra-pair encounters.

Evolution of Female Preference for Younger Males:

Previous theoretical work has suggested that females should prefer to mate with older males, as older males should have higher fitness than the average fitness of the cohort into which they were born. However, studies in humans and model organisms have shown that as males age, they accumulate deleterious mutations in their germ-line at an ever-increasing rate, thereby reducing the quality of genes passed on to the next generation. Thus, older males may produce relatively poor-quality offspring. To better understand how male age influences female mate preference and offspring quality, we used a genetic algorithm model to study the effect of age-related increases in male genetic load on female mate preference. When we incorporate age-related increases in mutation load in males into our model, we find that females evolve a preference for younger males. Females in this model could determine a male’s age, but not his inherited genotype nor his mutation load. Nevertheless, females evolved age-preferences that led them to mate with males that had low mutation loads, but showed no preference for males with respect to their somatic quality. These results suggest that germ-line quality, rather than somatic quality, should be the focus of female preference in good genes models.

Causal Inference in Multisensory Perception:

Perceptual events derive their significance to an animal from their meaning about the world, that is from the information they carry about their causes. The brain should thus be able to efficiently infer the causes underlying our sensory events. Here we use multisensory cue combination to study causal inference in perception. We formulate an ideal-observer model that infers whether two sensory cues originate from the same location and that also estimates their location(s). This model accurately predicts the nonlinear integration of cues by human subjects in two auditory-visual localization tasks. The results show that indeed humans can efficiently infer the causal structure as well as the location of causes. By combining insights from the study of causal inference with the ideal-observer approach to sensory cue combination, we show that the capacity to infer causal structure is not limited to conscious, high-level cognition; it is also performed continually and effortlessly in perception.

Antagonistic Bacterial Interactions Help Shape Host-Symbiont Dynamics within the Fungus-Growing Ant-Microbe Mutualism:

Conflict within mutually beneficial associations is predicted to destabilize relationships, and theoretical and empirical work exploring this has provided significant insight into the dynamics of cooperative interactions. Within mutualistic associations, the expression and regulation of conflict is likely more complex than in intraspecific cooperative relationship, because of the potential presence of: i) multiple genotypes of microbial species associated with individual hosts, ii) multiple species of symbiotic lineages forming cooperative partner pairings, and iii) additional symbiont lineages. Here we explore complexity of conflict expression within the ancient and coevolved mutualistic association between attine ants, their fungal cultivar, and actinomycetous bacteria (Pseudonocardia). Specifically, we examine conflict between the ants and their Pseudonocardia symbionts maintained to derive antibiotics against parasitic microfungi (Escovopsis) infecting the ants’ fungus garden. Symbiont assays pairing isolates of Pseudonocardia spp. associated with fungus-growing ants spanning the phylogenetic diversity of the mutualism revealed that antagonism between strains is common. In contrast, antagonism was substantially less common between more closely related bacteria associated with Acromyrmex leaf-cutting ants. In both experiments, the observed variation in antagonism across pairings was primarily due to the inhibitory capabilities and susceptibility of individual strains, but also the phylogenetic relationships between the ant host of the symbionts, as well as the pair-wise genetic distances between strains. The presence of antagonism throughout the phylogenetic diversity of Pseudonocardia symbionts indicates that these reactions likely have shaped the symbiosis from its origin. Antagonism is expected to prevent novel strains from invading colonies, enforcing single-strain rearing within individual ant colonies. While this may align ant-actinomycete interests in the bipartite association, the presence of single strains of Pseudonocardia within colonies may not be in the best interest of the ants, because increasing the diversity of bacteria, and thereby antibiotic diversity, would help the ant-fungus mutualism deal with the specialized parasites.

Do Haematophagous Bugs Assess Skin Surface Temperature to Detect Blood Vessels?:

It is known that some blood-sucking insects have the ability to reach vessels under the host skin with their mouthparts to feed blood from inside them. However, the process by which they locate these vessels remains largely unknown. Less than 5% of the skin is occupied by blood vessels and thus, it is not likely that insects rely on a “random search strategy”, since it would increase the probability of being killed by their hosts. Indeed, heterogeneities along the skin surface might offer exploitable information for guiding insect’s bites.
We tested whether the bug Rhodnius prolixus can evaluate temperature discontinuities along the body surface in order to locate vessels before piercing the host skin. When placed over a rabbit ear, the bug’s first bites were mostly directed towards the main vessels. When insects were confronted to artificial linear heat sources presenting a temperature gradient against the background, most bites were directly addressed to the warmer linear source, notwithstanding the temperature of both, the source and the background. Finally, tests performed using uni- and bilaterally antennectomized insects revealed that the bilateral integration of thermal inputs from both antennae is necessary for precisely directing bites.
R. prolixus may be able to exploit the temperature differences observed over the skin surface to locate blood vessles. Bugs bite the warmest targets regardless of the target/background temperatures, suggesting that they do not bite choosing a preferred temperature, but select temperature discontinuities along the skin. This strategy seems to be an efficient one for finding blood vessels within a wide temperature range, allowing finding them on different hosts, as well as on different areas of the host body. Our study also adds new insight about the use of antennal thermal inputs by blood sucking bugs.

Deinococcus geothermalis: The Pool of Extreme Radiation Resistance Genes Shrinks:

Bacteria of the genus Deinococcus are extremely resistant to ionizing radiation (IR), ultraviolet light (UV) and desiccation. The mesophile Deinococcus radiodurans was the first member of this group whose genome was completely sequenced. Analysis of the genome sequence of D. radiodurans, however, failed to identify unique DNA repair systems. To further delineate the genes underlying the resistance phenotypes, we report the whole-genome sequence of a second Deinococcus species, the thermophile Deinococcus geothermalis, which at its optimal growth temperature is as resistant to IR, UV and desiccation as D. radiodurans, and a comparative analysis of the two Deinococcus genomes. Many D. radiodurans genes previously implicated in resistance, but for which no sensitive phenotype was observed upon disruption, are absent in D. geothermalis. In contrast, most D. radiodurans genes whose mutants displayed a radiation-sensitive phenotype in D. radiodurans are conserved in D. geothermalis. Supporting the existence of a Deinococcus radiation response regulon, a common palindromic DNA motif was identified in a conserved set of genes associated with resistance, and a dedicated transcriptional regulator was predicted. We present the case that these two species evolved essentially the same diverse set of gene families, and that the extreme stress-resistance phenotypes of the Deinococcus lineage emerged progressively by amassing cell-cleaning systems from different sources, but not by acquisition of novel DNA repair systems. Our reconstruction of the genomic evolution of the Deinococcus-Thermus phylum indicates that the corresponding set of enzymes proliferated mainly in the common ancestor of Deinococcus. Results of the comparative analysis weaken the arguments for a role of higher-order chromosome alignment structures in resistance; more clearly define and substantially revise downward the number of uncharacterized genes that might participate in DNA repair and contribute to resistance; and strengthen the case for a role in survival of systems involved in manganese and iron homeostasis.

Also:
Lactate, Fructose and Glucose Oxidation Profiles in Sports Drinks and the Effect on Exercise Performance
Cultural Diversity, Economic Development and Societal Instability
Stochastic Species Turnover and Stable Coexistence in a Species-Rich, Fire-Prone Plant Community
Global Patterns of City Size Distributions and Their Fundamental Drivers
Children’s Health Status: Examining the Associations among Income Poverty, Material Hardship, and Parental Factors
As always: read, rate, comment, annotate, use and reuse and, if you blog about the PLoS ONE papers, try to use the correct form of the URL in order to generate a trackback.

Last paper by Steve Irwin!

Just published about an hour ago (if it was in hardcopy, it would still be hot off the presses). And it is a wonderful paper! Australian crocs can and will travel much longer distances than was previously thought and their homing instinct is strong and navigational capacity excellent, even in a case where a large obstacle (Cape York Peninsula) needed to be navigated around:
Satellite Tracking Reveals Long Distance Coastal Travel and Homing by Translocated Estuarine Crocodiles, Crocodylus porosus:

Crocodiles are widely distributed and can usually be found in remote areas, however very little is known about their movements on a larger scale. In this study, Read and colleagues (including the late Steve Irwin) use satellite tracking to report the movements of three large male crocodiles, which were relocated up to 411km from their capture sites in Northern Australia. The results show that each crocodile returned to its original capture site within days, indicating that homing abilities are present amongst crocodiles.

croc.jpg
Can you imagine anyone doing this work without Steve Irwin? Who else would be able to grab a big croc, attach a satellite tracker, load it and unload it some hundreds of miles away, then follow their movements on the computer screen? Would you dare ask your grad students to do that?

Computational Biology around the world

Johanna Dehlinger writes:

In September, PLoS Computational Biology begins a series entitled “Developing Computational Biology” about the pursuit of scientific endeavors in computational biology around the world. Each country has unique features in areas from educational programs, types of research being undertaken and the ways that research is funded. The series starts with a perspective on computational biology in Mexico, followed by contributions about Brazil, Cuba, Argentina, China, and South Africa.

This will be interesting to watch – tune in.

Come to ConvergeSouth

This is why you should attend ConvergeSouth. OK, Anton will lead a session, and so will I, but check out the entire program – it is just getting more and more amazing every year! And it is probably the most pleasant and enjoyable conference in any given year.

Brian Russell is now a Social Software and Multimedia Consultant for Hire

And it is hard to find anyone better than Brian:

I am now available for hire to consult on the creation, care, and feeding of online communities. Plus I can create audio and video for the web. To get an idea of my professional experience you can check out my resume here and my portfolio here.
————————-
I’m interested in working for non-profits, businesses, and progressive political campaigns. I can help you make your own media and demonstrate how it will strengthen your mission and benefit your organization financially. But most important is communicating with customers, members, and constituents. Please contact me and I’ll help you accomplish your goals.

Today’s Carnivals

What’s Up, Postdoc? September Carnival is up on … ponderings of a fool.
Grand Rounds is starting its 4th year of existence up on Kevin MD’s blog. Congratulations!
Carnival of the Green #96 is up on Karavans.

New and Exciting in PLoS Medicine and PLoS Biology

A bunch of new articles got published in PLoS Medicine and PLoS Biology yesterday. Here are my two picks, and you go and check the rest:
Brain Dynamics Underlying the Nonlinear Threshold for Access to Consciousness:

Understanding the neural mechanisms that distinguish between conscious and nonconscious processes is a crucial issue in cognitive neuroscience. In this study, we focused on the transition that causes a visual stimulus to cross the threshold to consciousness, i.e., visibility. We used a backward masking paradigm in which the visibility of a briefly presented stimulus (the “target”) is reduced by a second stimulus (the “mask”) presented shortly after this first stimulus. (Human participants report the visibility of the target.) When the delay between target and mask stimuli exceeds a threshold value, the masked stimulus becomes visible. Below this threshold, it remains nonvisible. During the task, we recorded electric brain activity from the scalp and reconstructed the cortical sources corresponding to this activity. Conscious perception of masked stimuli corresponded to activity in a broadly distributed fronto-parieto-temporal network, occurring from about 300 ms after stimulus presentation. We conclude that this late stage, which could be clearly separated from earlier neural events associated with subliminal processing and mask-target interactions, can be regarded as a marker of consciousness.

The Absolute Risk of Venous Thrombosis after Air Travel: A Cohort Study of 8,755 Employees of International Organisations:

Background.
Blood normally flows smoothly throughout the human body, supplying the brain and other vital organs with oxygen and nutrients. When an injury occurs, proteins called clotting factors make the blood gel or coagulate at the injury site. The resultant blood clot (thrombus) plugs the wound and prevents blood loss. Sometimes, however, a thrombus forms inside an uninjured blood vessel and partly or completely blocks the blood flow. A clot inside one of the veins (vessels that take blood to the heart) deep within the body is called a deep vein thrombosis (DVT). Symptoms of DVT (which usually occurs in the deep veins of the leg) include pain, swelling, and redness in one leg. DVT is usually treated with heparin and warfarin, two anticoagulant drugs that stop the blood clot growing. If left untreated, part of the clot (an embolus) can break off and travel to the lungs, where it can cause a life-threatening condition called pulmonary embolism (PE). Fortunately, DVT and PE are rare but having an inherited blood clotting disorder, taking an oral contraceptive, and some types of surgery are all risk factors for them. In addition, long-haul plane travel increases the risk of DVT and PE, known collectively as venous thrombosis (VT) 2- to 4-fold, in part because the enforced immobilization during flights slows down blood flow.
Why Was This Study Done?
Although the link between air travel and VT was first noticed in the 1950s, exactly how many people will develop DVT and PE (the absolute risk of developing VT) after a long flight remains unknown. This information is needed so that travelers can be given advice about their actual risk and can make informed decisions about trying to reduce that risk by, for example, taking small doses of anticoagulant medicine before a flight. In this study, the researchers have determined the absolute risk of VT during and after long-haul air travel in a large group of business travelers.
What Did the Researchers Do and Find?
The researchers enrolled almost 9,000 employees from several international companies and organizations and followed them for an average of 4.4 years. The details of flights taken by each employee were obtained from company records, and employees completed a Web-based questionnaire about whether they had developed VT and what risk factors they had for the condition. Out of 53 thrombi that occurred during the study, 22 occurred within eight weeks of a long-haul flight (a flight of more than four hours). From this and data on the total time employees spent on long-haul flights, the researchers calculated that these flights tripled the risk of developing VT, and that the absolute risk (the probability of something occurring in a certain time period) of a VT occurring shortly after such travel was one event per 4,656 flights. They also calculated that the risk of VT was increased by exposure to more flights during a short period and to longer flights and was greatest in the first two weeks after a flight. In addition, the risk of VT was particularly high in young employees, women taking oral contraceptives, and people who were short, tall or overweight.
What Do These Findings Mean?
The main finding of this study is that the absolute risk of VT after of a long-haul flight is low–only one passenger out of nearly 5,000 is likely to develop VT because of flying. However, the study included only healthy people without previous VT whose average age was 40 years, so the absolute risk of VT after long-haul flights might be higher in the general traveling population. Even so, this finding strongly suggests that prophylactic (preventative) use of anticoagulants by all long-haul travelers may not be justified because these drugs have potentially dangerous side effects (for example, they can cause uncontrolled bleeding). Subgroups of travelers with additional risk factors for VT might, however, benefit from the use of this and other prophylactic measures, but randomized trials are needed to find out who would benefit most from which prophylactic measure.

My picks from ScienceDaily

If You Want More Babies, Find A Man With A Deep Voice:

Men who have lower-pitched voices have more children than do men with high-pitched voices, researchers have found. And their study suggests that for reproductive-minded women, mate selection favours men with low-pitched voices.

Spaceflight Can Change Bacteria Into More Infectious Pathogens:

Space flight has been shown to have a profound impact on human physiology as the body adapts to zero gravity environments.

Making Bicycles That Balance Better:

For nearly 150 years, scientists have been puzzled by the bicycle. How on earth is it possible that a moving bicycle can, all by itself, be so stable? Researchers of the Delft University of Technology (TU Delft), working with colleagues from Cornell University and the University of Nottingham, UK, believe they have now found the ultimate model of the bicycle.

How Does The Brain Develop During Embryogenesis?:

One of the great questions of neurobiology, how the brain is built up during embryonic development, could be resolved by a young French scientist in an award winning project organised by the European Science Foundation (ESF) and the European Heads of Research Councils (EuroHORCS).

Controlling For Size May Also Prevent Cancer:

Scientists at Johns Hopkins recently discovered that a chemical chain reaction that controls organ size in animals ranging from insects to humans could mean the difference between normal growth and cancer.

New Dinosaur Species Found In Montana:

A dinosaur skeleton found 24 years ago near Choteau has finally been identified as a new species that links North American dinosaurs with Asian dinosaurs. The dinosaur would have weighed 30 to 40 pounds, walked on two feet and stood about three feet tall. The fossil came from sediment that’s about 80 million years old.

Hormone Therapy Boosts Sexual Interest But Not Memory, Study Suggests:

Hormone therapy in early post-menopause increases sexual interest, but does not improve memory, according to a new study. “Contrary to what we predicted, hormone therapy did not have a positive affect on memory performance in younger mid-life women,” said Pauline Maki, associate professor of psychiatry and psychology at the University of Illinois at Chicago, who led the study.

ClockQuotes

While reason is puzzling itself about mystery, faith is turning it to daily bread, and feeding on it thankfully in her heart of hearts.
– F. D. Huntington

Fungus eats radiation for breakfast at Chernobyl!

Sarah Wallace, Matt Ford, ScienceGoGo and Jason Stajich comment on the fungus that gets its energy from radiation. I’ve heard of Deinococcus radiodurans before, but this is a fungus! Well, if there is an energy source to tap into, even if it is in the middle of Chernobyl, some life form is likely to find a way to do it.