Tar Heel Tavern

Pop A Top Again! Billy the Blogging Poet is hosting the Tar Heel Tavern #76

Try Wagner…or My Sharona…

…and you’ll never think about them the same way again. This is the ultimate science-fiction-come-true gadget (pun intended).
How about a “Guess the Song” game with the iPod swicthed to ‘mute’?

Teaching Biology Lab – Week 4

Teaching Biology Lab - Week 4 While I am teaching the biology lab, I set this post to show up automatically at the same time. It describes what we do today, the same stuff we did back on April 02, 2006:

Continue reading

Postscript to Pittendrigh’s Pet Project – Phototaxis, Photoperiodism and Precise Projectile Parabolas of Pilobolus on Pasture Poop

We have recently covered interesting reproductive adaptations in mammals, birds, insects, flatworms, plants and protists. For the time being (until I lose inspiration) I’ll try to leave cephalopod sex to the experts and the pretty flower sex to the chimp crew.
In the meantime, I want to cover another Kingdom – the mysterious world of Fungi. And what follows is not just a cute example of a wonderfully evolved reproductive strategy, and not just a way to couple together my two passions – clocks and sex – but also (at the very end), an opportunity to post some of my own hypotheses online.

Continue reading

Friday Weird Sex Blogging

It’s been a very busy day (and I am teaching tomorrow morning), but I am working on Friday Weird Sex Blogging right now. Lots of pictures. It will posted later tonight….

Chronomodulated Cancer Therapy

Oversimplified, but much believed idea: Many cancer drugs target cells during cell division. Healthy cells divide at a particular time of day (exact timing may differ between cell types). Cancer cells are not under the control of the circadian clock so they divide at all times of the day (and they divide more often anyway). Thus, incorrect timing of chemotherapy – given during the time most healthy cells divide as well as some cancer cells – will kill more healthy than cancerous cells, leading to early termination of treatment and worse prognosis. Correct timing – during the time when healthy cells are not dividing, but cancer cells are – will preferentially kill cancer cells, leading to a better outcome. That is the theory. Here is one example of a study testing this idea:
Chronomodulated Therapy for Colorectal Cancer Produces Promising Results in Men:

Among patients with metastatic colorectal cancer, administration of the chemotherapy drugs Eloxatin® (oxaliplatin), 5-fluorouracil, and leucovorin on a schedule that is adjusted to circadian rhythms (chronomodulated) appears to improve outcomes in men but not in women.
—————————snip—————————–
In an attempt to improve outcomes among patients treated with chemotherapy, researchers in Europe recently studied the effects of varying the delivery chemotherapy according to a patient’s circadian rhythm (the body’s 24-hour cycle). The idea behind this approach is that there may be certain points in the circadian rhythm when chemotherapy drugs will have the greatest effect with the least toxicity. Varying delivery of treatment according to the circadian rhythm is referred to as chronomodulated therapy.
—————————snip—————————–
* Overall, survival was similar in the two treatment groups: Among patients treated with FOLFOX2, 36.9% of patients survived for two years or longer. Among patients treated with chronoFLO4, 37% of patients survived for two years or longer.
* The frequency of serious side effects was similar in the two treatment groups, but the types of side effects varied. Patients treated with FOLFOX2 were more likely to experience low white blood cell counts (neutropenia), and patients treated with chronoFLO4 were more likely to experience problems such as diarrhea.
* The effect of chronoFLO4 differed by sex. Among men, those treated with chronoFLO4 had a 25% reduction in risk of death compared to those treated with FOLFOX2. Among women, those treated with chronoFLO4 had a 38% increase in risk of death compared to those treated with FOLFOX2. The reasons for this difference between men and women are uncertain.

I really need to get back in the saddle and continue studying sex differences in circadian function….

Lakoff In Space And Time

 Lakoff In Space And Time This post from October 21, 2004 laments the lack of spatial and temporal context for Lakoff’s theory of political ideology.

Continue reading

Women and Animals

Carnival of Feminists #20 is up on SuperBabymama.
Friday Ark #98 is up on The Modulator.

Where are all the female bloggers? On Rude Pundit, of course!

Have you been reading The Rude Pundit lately. He’s got a fantastic line-up of guestbloggers, all female, and all rejoicing in the opportunity to be as rude possible. The latest today, It’s all about sex by Pam. Read them all.

Hillary as Senate Dem Leader?

Intriguing, and I hope it’s true, but Harry Reid denies it vehemently. Anything to get Hillary out of the Presidential race, I say. (Hat-tip: Shakespeare’s Sister)
But what would Harry do? Replace Dean as DNC Chair?

Who Will Die in Harry Potter #7?

Lance speculates.
I was correct when I made the similar prediction for Volume 6, but I am out of my league now. Perhaps I’ll have to do some more thinking on the topic….

Link Between the Circadian and Cell Cycles

Interesting, if you are in the field:
The Neurospora Checkpoint Kinase 2: A Regulatory Link Between the Circadian and Cell Cycles
by António M. Pregueiro, Qiuyun Liu, Christopher L. Baker, Jay C. Dunlap, Jennifer J. Loros

The clock gene period-4 (prd-4) in Neurospora was identified by a single allele displaying shortened circadian period and altered temperature compensation. Positional cloning followed by functional tests show that PRD-4 is an ortholog of mammalian checkpoint kinase 2 (Chk2). Expression of prd-4 is regulated by the circadian clock and, reciprocally, PRD-4 physically interacts with the clock component FRQ, promoting its phosphorylation. DNA-damaging agents can reset the clock in a manner that depends on time of day, and this resetting is dependent on PRD-4. Thus, prd-4, the Neurospora Chk2, identifies a molecular link that feeds back conditionally from circadian output to input and the cell cycle.

Carbon Dating

Since Creationists do not believe in Carbon Dating, they are not allowed to use this service. The only requirement is that you are capable of remaining isotopic during a conversation.
In other news, Jenna, TNG and John have, so far, responded to my book meme tag. Update: And Greensmile did it as well.

HIV/AIDS blogging

My friend Ron reminds me that the next edition of the International Carnival of Pozitivities is due August 10 on AIDS Combat Zone. If you are HIV positive, submit an entry, if not, link to the carnival and spread the awareness.

Obligatory Reading of the Day

A three-fer from Echidne:
Divorce — Preparing For Travels in Wingnuttia
Christian Lady Blogging — Part One Of Travels in Wingnuttia
Divorce: Part Two of Travels in Wingnuttia

Skeptoblogging of the week (or two)

The 40th edition of the Skeptic’s Circle is up on Daylight Atheism.

The race is to the smart…and the fleet and the well camouflaged

Predators Prefer To Hunt Small-brained Prey

Predators such as leopards and chimpanzees consistently target smaller-brained prey less capable of escape, research at the University of Liverpool has shown.They avoid more intelligent prey such as monkeys which have exceptionally large brains and are more capable of escaping attacks.
————————snip——————–
Animals with small brains lack behavioural flexibility and are probably less capable of developing new strategies to escape predators, compared with larger-brained species.
————————snip——————–
“Some animals’ ability to avoid being eaten by predators may be a contributing factor to the evolution of large brains across some species, adding to conventional theories which argue this is important for developing social relationships and using tools.”

When we talk about co-evolution, we usually think of pairs of species: a flower and a bee, a lion and a zebra, a ground squirrel and a rattlesnake. But in reality, each species is involved in multiple co-evolutionary arms-races with a number of other species simultaneously. You evolve either general adapatations to survival that give you an average success rate against all other species, or you evolve highly specialized adaptations to beat one particular species (which is most abundant, most tasty, most dangerous, etc, where you live) and ignore the others.
So, some of the prey species got too smart, others too fast, others too stealthy for these predators to bother with any more – they lost those co-evolutionary races and are now focusing on other species that are still sufficiently dumb/slow/obvious in their environment even if they do not taste as well or cannot be found in such great numbers or ar in other ways an inconveneince to the predator – but they are the only ones around who are still an easy catch.
So, just like we stopped thinking about food chains and started thinking about food webs, we should stop thinking only about co-evolutionary pairs and start thinking about co-evolutionary webs.

Birds on vacation

I And The Bird #29 is up on Alis Volat Propiis

Try to schedule your surgery for the early morning

A number of media outlets are reporting on the new Duke University study on the effects of time-of-day on the outcome of surgery:

Patients who undergo surgery late in the afternoon are more likely to experience unexpected adverse events related to their anesthesia than are patients whose operations begin in the morning, a new analysis by Duke University Medical Center researchers suggests.
——————-snip———————–
In addition to spotting problems related to anesthesia, Wright and her colleagues also found that surgery patients experienced a significant increase in “administrative delays” during late afternoon, which might contribute to the increase in adverse events that occur during this time. The delays included waiting for laboratory test results, doctors running late, transporters not being available to move patients and rooms not being ready on time.
——————-snip———————–
Based on their findings, Wright and her colleagues suggest a number of factors that might contribute to variations in health outcomes. These factors include fatigue among health care providers, swings in the circadian rhythms that influence a person’s natural ups and downs over the course of a day, and institutional work schedules.
——————-snip———————–
Wright said that many factors, involving both patients and hospitals, may contribute to increased rates of adverse events late in the afternoon. For example, patients may be more susceptible to either pain or post operative nausea and vomiting in the late afternoon. We don’t know if issues such as not having eaten all day or spending a stressful day waiting in the hospital may have an influence on this, Wright said.
Late afternoon also is a time when changes in the teams that administer anesthesia during surgery coincide with natural circadian rhythm lows, Wright said. The circadian rhythm serves as the body’s internal clock that regulates sleep, brain wave activity and other bodily functions. Circadian lows occurring around 3 p.m. to 5 p.m. and again at 3 a.m. to 5 a.m may affect human performance of complex tasks such as those required in anesthesia care. Changes in anesthesia care teams usually occur around 7 am and again between 4 pm and 6 pm. End of day fatigue, a circadian low point, and changes in care team are all occurring around 3 pm to 6 pm and may be interacting in a way that affects patient care, she said.

This was know before, but the size and scope of this study is remarkable.

Student Evaluations

Student Evaluations I wrote this on March 03, 2005 on Science And Politics and reposted it on December 10, 2005 on The Magic School Bus. The title says it all…

Continue reading

What makes a memorable poster, or, when should you water your flowers?

Blogging on Peer-Reviewed Research

Being out of the lab, out of science, and out of funding for a while also means that I have not been at a scientific conference for a few years now, not even my favourite meeting of the Society for Research on Biological Rhythms. I have missed the last two meetings (and I really miss them – they are a blast!).
But it is funny how, many years later, one still remembers some posters from poster sessions. What makes a poster so memorable?

Continue reading

Admirable….not necessarily accurate…regarding science…in a movie!?

That is what the SEED overlords are asking this week:

Continue reading

Dealing with the Heat Wave

WillR explains exactly what the “heat index” is.

Quote of the Day

“….asking Woody to name-check a mere mortal like David Blaine would be like asking Ingmar Bergman to acknowledge ABBA….”

David Fellerath in today’s review of Scoop, new Woody Allen’s movie which, once it opens nearby, I will see out of religious and patriotic duty – and I am not talking about Johanssen here, just that even the worst Woody Allen movie is better than pretty much anything out of Hollywood in any given year.

Are there foxes in atheistholes?

You should really go now and read the “Meet The Enemy” interview with me on a satirical blog called God, Country & Apple Pie. Check out the rest of the far right-wing Christian, anti-science, fascist-theocratic fare there as well.

Welcome to the new SciBling!

David Dobbs is an accomplished science journalist and writer. I am sure you will enjoy reading hs new blog, right here on SEED scienceblogs – Smooth Pebbles!
So, go say Hi! He’s already moved the archives from his old blog to the new place so there’s plenty of good stuff to read already.

Happy Blogiversary to….

KIm, the nursing goddess of Emergiblog. Go say Hi!

Sciblogging of the week (or two)

Tangled Bank #59 is up on Science And Reason.

Books: “Biased Embryos and Evolution” by Wallace Arthur

Books: 'Biased Embryos and Evolution' by Wallace Arthur
This is a post from June 28, 2005, reviewing one of my favourite new evolution books:

Continue reading

Mokie-Koke

When I saw this article in SEED Maagazine, I had only one thought – Mokie-Koke!
Readers of science fiction know what I am talking about. I was reminded of “The Merchant’s War“, the 1984 sequel to the 1952 brilliant dystopia “The Space Merchants“, the book that beat “1984” and “Brave New World” in its accuracy of prediction. The initial novel – one of the all-time-greats of the genre, was written by Frederick Pohl and Cyril Kornbluth. The sequel, 32 years later, was written by Pohl alone.
It’s been at least 15 years since I last read The Merchants’ War, but if I remember correctly, each megacorporation (one of the very few ruling the world of the future) manufactures its own brands of a coke-like drink, a candy bar and cigarettes. These three products are designed to be addictive in themselves, but also, to induce cravings for each other. So, drinking Mokie-Koke makes you want to light up a cigarette (made by the same company), which in turn makes you want the candy bar, eating which makes you crave a Moki-Koke. Thus, workers/citizens of the future world are forever loyal to the Corporation-State.
The SEED article highlights some recent science showing that such connections between different commercial products are a reality – although not by corporate design. Alcohol and nicotine are in cahoots with each other – when you have a drink, you are more likely to want to smoke (and it feels better) and vice versa. I have certainly noticed this in myself and others. However, I have also noticed (since I am not a big alcohol consumer, but a big caffeine consumer), that Coke and cigarettes tend to induce cravings for each other (as does coffee – this is anecdotal, but a well known anecdote). Chocolate (any brand) makes me want to drink Coke which makes me want to light one up.
This should not be that surprising, as the brain tends to deal with all of its addictions in pretty much the same place using pretty much the same neurochemicals. So, being addicted to gambling, pornography or Internet will also make you drink and smoke? Perhaps….

PoliBlogging of the week (or two)

Carnival of Liberals #18 – The No Rules Edition – is up on Rey On The Hill

EduBlogging of the week

The Carnival Of Education # 78: Ferris Wheel Edition is up on This Week In Education
Carnival of Homeschooling #31 is up on Phat Mommy.

Obligatory Readings of the Day

Along with my earlier post (the “can of worms…” one) you should really read these two together. Superposing them works synergistically: the whole is greater than the sum of parts:
Republican Crows
Archetypes
(via Mike)

How many things…

..are wrong with this article?

Can reality-based blogging beat unreality-based blogging in a popularity contest?

Wow! In just a couple of days, SEED scienceblogs.com moved up from #100 to #78 on Technorati Most Favourited list. While the numbers are still small it is easy to game the system, but in the long run, the most popular blogs will emerge on top. If you click on this and make SB one of your favourites – and just one more person is enough for this – we’ll overtake PowerLine!
Update: You did it! Thank you! Now on to greater hights, to reach Wonkette and Pharyngula and BoingBoing!

Will God win in Kansas today?

The eyes of the nation today are (or should be) on Kansas elections, as many Creationists on the school board are facing tough reality-based challengers. If you are in Kansas – go and vote. If you want to know how it all goes, check what Josh and Pat report during the day.
Update: Science won!

Opening the can of worms – blogging politics again

It’s been a while since I’ve written anything about one of my pet topics – the way the changes in the society are resulting in the change in attitudes towards sex and gender, and the change in the institution of marriage, and how it all relates to politics of the moment.
I’ve been playing it pretty carefully since my move here to SEED scienceblogs, not firing away with my biggest artillery yet. I want to get back there again, gradually, so this is going to be just a summary and an opportunity to get you to read some of my older stuff to see where I stand. It is a also a test balloon to see how the new, expanded readership will respond to my political rants. Hopefully, this will get a lot of comments as well, and not all of them screaming insults at me:

Continue reading

Bioinformatics and Computational Biology

Bio::Blogs #2 is up on Neil Saunder’s blog.

The Quotable Tree

The second Festival of the Trees is up on Roundrock Journal. It’s big and beautiful!

Are you blogging about Higher Ed?

The Teaching Carnival is on summer break, but the school is going to start soon, so start tagging your posts with the ‘teaching-carnival’ tags and check out the Fall lineup of hosts. The next edition, exatly one month from today, will be on WorkBook.

Grand Rounds

The week’s choicest medical posts are collected on Inside Surgery.

Language

Language I posted this on the Edwards blog on Tuesday February 10, then re-posted it on JREG, then re-posted it again on my own blog here on August 25, 2004. It was a response to IM-like spelling in one-line comments by the newly-arrived Deaniacs who displaced the lengthy, well-written, thoughtful discussions we used to have on the campaign blog before Dean conceded in Wisconsin and told his supporters to support Edwards for the rest of the primaries:

Continue reading

Monster House

monster_house.jpgA couple of days ago I took my son to see “Monster House”. The way the movie was not pushed hard by the marketers (compared to some other animated stuff), my expectations were low. However, I really liked the movie a lot!
It is not a non-stop slapstick comedy like Shrek, it is not as cerebral and political as Antz, but it is just as good as Nemo, or Robots, or Monsters, Inc. or Ice Age I, and better than Incredibles IMHO. The action is mostly happening in the second half, while the first half manages to really flesh out the characters well. I also like the fact that there are no superfluous characters – everybody who needed to be in the movie was in it and no more.
The movie has a little bit of an 1980s nostalgic feel, the animation is excellent but not in-your-face and the story is coherent. Actully, Junior and I had a great time trying to predict what was going to happen next…”Where are the cops now?”…”How about the dog?” …and all the questions got their answers by the end of the movie. We were not disappointed by any untied threads or deus ex machinas. Recommended.

Would you….

….do Google?

Intelligently Designed US History

First they came after evolution. They say they wanted to “teach the controversy”.
Now, they are after history, and no controversy-teaching is allowed:

One way to measure the fears of people in power is by the intensity of their quest for certainty and control over knowledge.
By that standard, the members of the Florida Legislature marked themselves as the folks most terrified of history in the United States when last month they took bold action to become the first state to outlaw historical interpretation in public schools. In other words, Florida has officially replaced the study of history with the imposition of dogma and effectively outlawed critical thinking.

Will there be a series of trials (Scopes, Arkansas, Dover…) about teaching history in schools over the next century? Oh, and definitely read the rest of the article – it is excellent!

Plan B

Connect The Dots. Will they ever do anything if not for political reasons? Health? They don’t care… Approval of a Bush appointee? Sure, let’s sign what needs to be signed….

T-rex at night!

I saw a trailer for Night at the Museum the other day and I can’t wait to see the movie (opens December 22). Robin Williams as Teddy Roosevelt – Priceless!
night%20at%20the%20museum%20poster.jpg

Food-Entrainable Circadian Clock

It has been known for decades that scheduled meals can entrain the circadian clock. In some species (e.g., in some birds), regular timing of feeding entrains the main circadian system of the body in the suprachiasmatic (SCN) area of the hypothalamus, the retina and the pineal. In other species (e.g., rodents), it appears that the food-entrainable oscillator is anatomically and functionally distinct from the main pacemaker in the SCN.
Researchers working on different species discovered different properties and different anatomical locations for the food-entrainable clock. Now, a study from UT Southwestern Medical Center takes yet another look at the location of the food clock in mice, using expression of Period, a canonical clock gene, as the marker for the clock activity:
Timing of Food Consumption Activates Genes in Specific Brain Area:

The researchers put the mice on a 12-hour light/dark cycle, and provided food for four hours in the middle of the light portion. Because mice normally feed at night, this pattern is similar to humans eating at inappropriate times. Dysfunctional eating patterns play a role in human obesity, particularly in the nocturnal eating often seen in obese people, the researchers note.
The mice soon fell into a pattern of searching for food two hours before each feeding time. They also flipped their normal day/night behavior, ignoring the natural cue that day is their usual time to sleep. After several days, the researchers found that the daily activation cycle of Per genes in the SCN was not affected by the abnormal feeding pattern.
However, in a few different areas of the brain, particularly a center called the dorsomedial hypothamalic nucleus or DMH, the Per genes turned on strongly in sync with feeding time after seven days. When the mice subsequently went two days without food, the genes continued to turn on in sync with the expected feeding time.

I wonder what would have happened if instead of fasting, they gave food ad libitum at the end of the experiment. Also, what would have happened if either the whole experiment or that last 2-day bit was performed in constant darkness?
The paper is coming out on August 8 in PNAS. If there is something in the paper that the press release did not get right, I’ll be sure to tell you at that time.

Just flip a switch…

It takes two to vote….one to pull the lever, er., touch the screen, and the other to flip the switch.

Neuroblogging of the week

Encephalon #3 is up on Thinking Meat Blog.