Category Archives: Blogging

Meet the SciBlings

New installment of the periodic system of ScienceBloggers is now up on Page 3.14.

Quorum Sensing and the Blogosphere as a Superorganism

Quorum Sensing and the Blogosphere as a SuperorganismA microbiological metaphor for the blogosphere (from November 27, 2005):

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Chapel Hill – Carrboro Bloggers MeetUp

Summer is over so let’s start meeting again. Anton needs feedback on the days and locations.

Blogs and Science Communication

As a scientist and a blogger and someone very interested in science communication, I was quite delighted with Rob HelpyChalk’s series of three charts depicting traditional communication between scientists, traditional communication between scientists and general population, and the new two-way communication between scientists and general population (here is the third chart):
science%20communication.jpg
Bill and PZ have some comments on the chart as well. Leave your comments on Rob’s blog.

ConvergeSouth

Elizabeth Edwards will be leading the opening session at the ConvergeSouth blogging and journalism unconference on October 14th. Are you registered yet? Let’s have dinner together as well.
(Hat-tip: Ed)
Technorati Tag: ConvergeSouth

Long Tail of your blog?

Lance, Matt and Tom write on MSM misunderstaning of blogs, and on old posts that keep on giving. What are your old posts that keep getting links and comments months and years after they disappeared into the depths of archives? For me it is definitely this one.

More about SciBlings

Learn more about Seed’s ScienceBloggers in the latest part of the periodic system series.

Friday creepy-crawlies

Zygote Games has started a regular Friday feature – the Friday Parasite. Waaaaaaay cool! Which reminds me that, after a week’s break, I owe you some Friday Weird Sex Blogging…coming tonight….

Bloggers Struggle With What to Do About Vacation

It does not really apply to everyone, but mostly to A-list political/news bloggers:
No Day at the Beach
I am an obsesssive/compulsive blogger. But on those rare occasions that I get to go out of town for a few days, I decide to enjoy myself in a computer-free zone. Let the traffic drop. It’s summer and the traffic is in the doldrums anyway. And here on SB, I can even schedule a few posts (or re-posts of old stuff) in advance to keep the blog running if I want to. Traffic will come back up once I’m back, but I also need some rest and restoration of sanity every now and then. I am not planning a vacation any time soon, but when I do, I’ll just let the blog sit and it will be just fine.
(Hat-tip: Ed)

War on Science coming near you!

My SciBling Chris Mooney, as part of his book-signing tour, is finally coming my way. So, if you are from these parts and are interested in the Republican War On Science, make sure to check October 28th and/or 29th on your calendar.

Periodic Table of SciBlings

If you are confused by the sheer number of ScienceBloggers and need to know who is who and what everyone writes about, you should check the periodic table of SciBlings. Then, check out more detailed descriptions of some of the blogs and keep checking in the following days for the descriptions of others. A graphic, looking just like a real periodic table may be in the making soon…

Bloggers matter….

…..and smart politicians know this.

Science Blogging – what it can be

Publishing hypotheses and data on a blogFrom quite early on in my blogging endeavor, I was interested in exploring science blogging, what it is, what it can do, and what it can become. So, check out some of my earliest thoughts on this here and here.
Then, over about a month (from April 17, 2006 to May 17, 2006) I wrote a gazillion posts on this topic, and many science bloggers chimed in in the comments or on their own blogs. The repost of all of them together is under the fold. Check the originals (and comments) here:
April 17, 2006: Publishing hypotheses and data on a blog – is it going to happen on science blogs?
April 20, 2006: Blogs as cited references in scientific papers
April 20, 2006: More on publishing data on blogs
April 23, 2006: Even more on science online publishing
April 25, 2006: And even more on science online publishing
April 30, 2006: Social networking for scientists
May 05, 2006: Science Blogging
May 11, 2006: Free online science publishing
May 17, 2006: Publish in Open Access Journals if you want to get cited!
And I have never fogotten it – check out this, this and this. So, let’s start this topic all over again!

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Happy blogiversary!

Mike’s wonderful blog 10,000 Birds is three years old. Go say Hello.

Katrina blogswarm

If you write something related to Hurricane Katrina today (or have already done so recently), let Shakespeare’s Sister know so she can include your link in the Big Anniversary linkfest.

Tar Heel Tavern

The Tarheel Tavern #79 is up on Kivi Leroux Miller’s blog on Freelance Writing.

New Orleans, one year later, is still a ghost town

Last year, there was so much blogging about Katrina, I thought that the best thing I could do was create a large linkfest of everyone else’s posts. That is what I did – check it out here, a nice one-stop-shopping for the analysis and opinion at the time. If you need to refresh your memory that is the place to go. You can also find most of the iconic images collected in one place here.
But I did not entirely abstain from commenting myself, though I was trying to look for angles nobody else covered and news nobody else had – which was hard to find at that time. So, I blogged about how animals fared in the hurricane, especially horses.
I wrote about the refusal to take an offer of aid from Cuba and how free market killed NoLa.
I think I was the very first to blog about Kanye West and what he said on TV (as I was watching as it happened). I was also one of the first to report when Brownie was fired (or resigned).
I found four separate timelines. The frame of a looting mob was recognized and attacked early. And there were touching (and telling!) survivor stories that needed a wider audience.
There was humor.There was inside-the-Beltline politics.
I looked for what other people said at the time, including Lakoff, Kerry, Edwards and some others (and recognized early that the events may favour Edwards for 2008).
And there was much, much more.
I wrote two less newsy and more opinionated posts – Stop Beating on Bush! and We The People and upon re-readng them a year later, I still agree with every word in them.
Finally, when I wrote this – Ghost Town – many people scolded me for being so pessimistic. It turns out, I was right. New Orleans has still not recovered its population.
A large chunk of that population is not back yet. Some plan to come back, a year later, but still do not have a place to live. Others have assimilated in other places. The magic of living in New Orleans is dwarfed by the reality of survival.
The place has not been fixed yet. The dams are not built to sustain another hurricane of that size. The wetlands have not been restored. The big river is still fighting to change its course.
And the locals are still fighting over the urban project for the city: some have a vision of Disneyfied, white, upper-middle-class New Orleans; others react by insisting on restoring the city exactly as it was, warts and all, good and bad, shacks and slums and everything else. Voices of moderation and smart urban planning are overpowered by emotionally-charged voices of the two extremes. It is unfortunate that I was right. I wish I wasn’t.

Triangle Bloggers Barbecue

So, you must know by now, that last night I went to the Triangle Bloggers BBQ, hosted by Anton and his wonderful wife Erin. Needless to say, it was great fun, though I had perhaps a beer too many….(but the food….don’t let me get started on food – it was great)
Who was there? Local activists Will and his wonderful family (thank you for driving to the party), Brian and Ruby (thank you for driving from the party), my SciBling Abel, another fellow science blogger Reed Cartwright, the link to blook-publishing Jackson Fox, fellow Edwards supporter Jim Buie, meetup regulars Steve Cory, Josh Steiger, Perry and Roy Kim and several others.
Anton has posted a few pictures on Flickr and you can see me on one or two. I hope others add their photos as well.

Blog about Katrina this Monday!

A year ago this Monday, Katrina hit the Gulf states. We all blogged like crazy.
Since Bush Administration is desparately trying to supress the memory of their debacle, King Cranky and Melissa suggest we do a blogswarm – everyone blogs about Katrina on Monday and Shakes will collect the posts in a huge linkfest.
Need a reminder and a collection of facts? Check this Katrina timeline (via Arse Poetica)

Deep Wells of Dishonesty and Ignorance, Unveiling Slowly

I finally got to meet Reed Cartwright in person last night. Now that he is in Raleigh, and Panda’s Thumb resides in my old building on campus, I hope I’ll see him more often.
Speaking of Panda’s Thumb, it is currently, as in “this week”, demonstrating the power of the scienceblogging community, dissecting Jonathan Wells’ new pamphlet-in-book-form “The Politically Incorrect Guide to Darwinism and Intelligent Design” literally chapter by chapter.
The introduction to the series was written by Reed. Burt Humburg tackles the first chapter. PZ Myers dissected the Chapter 3, first with a draft on his own blog, then in a final form on Panda’s Thumb. Jason Rosenhouse is working on Chapter 8. You can see the draft on his blog and the final article will be appearing on Panda’s Thumb in a couple of days. Tara is just getting warmed up for the utter destruction of her assigned chapter.

Breathtaking pictures

Wolverine Tom posted some of his pictures from Badlands National Park in South Dakota he visited last summer.

80 more visits…

…and John will get his birthday wish fulfilled….

So, did you like this week’s theme?

So, did you like Books Around The Clock?
Tonight, I know where I’ll be, so Friday Weird Sex Blogging may happen tomorrow or at the very best very late at night.
Next week, back to normal programming, only one repost per day (chronobiology on Mondays, miscellaneous on Tuesdays, science on Wednesdays, education on Thursdays and politics on Fridays), perhaps some cat pictures taken by my daughter, and whatever else strikes my fancy on any given day.

Happy Birthday to Archy!

John McKay, one of my most favouritest bloggers, is hitting the Big Five-Oh today. So, go say Hello and help his Sitemeter get the 75,000th hit today.

Interview on Genetics And Health Blog

Hsien Hsien Lei is continuing her series of interviews of science bloggers, and today is my turn. As you have learned to expect by now, my answers are long and wordy. But the questions are interesting, so I hope you like the answers as well. Check it out here.

Turn your blog archives into a book (and sell it)

Turn your blog archives into a book (and sell it)Some ideas from November 17, 2005:

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Welcome the newest SciBlogger

Go say Hi to my new SciBling – Zuska at Thus Spake Zuska.

Notes – the new Facebook Blogging service

Facebook, always ahead of competition, just started a blog feature. While the Wall is a place to write notes to others, the Notes is the place to write on your own page.
You can edit or delete your posts and people can comment. I do not see any kind of e-mail notification for comments. Spam should not be a problem as the Facebook is a closed community. Interestingly, if you write about another person on Facebook, you can do a tag, so that person knows that you have mentioned them.
The best thing is I can use the RSS feed of this blog and use it as my Notes. It looks just like in any newsfeed and whenever I put something under the fold, people can click and come over here to read the rest of the post. Neat!
Techie blogs are commenting on the Notes already quite a bit. This blogger posted some images so you can see how the thing looks like in case you are not on Facebook.

1000 comments

It took only two months and 13 days for this blog to reach 1000 comments. The honors and a virtual prize, go to John McKay (aka Archy) who posted this comment just a few seconds ago. Thank you and keep ’em coming!

The Book Meme

The Book MemeThis was the first of several book-related memes I did, back on April 05, 2005. Follow the responses of people I tagged as well. And if you have not done this version yet, and you like the questions, then feel tagged and post your answers on your blog…

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Previewing Books on Blogs, and “Institutionalized” by Fred Smith and Joe Schmoe

<a href="Previewing Books on Blogs OK, this is not a re-post of one old post, but three. The first one, from December 17, 2005, introduces Institutionalized. The second one, from January 20, 2006, adds some more info about the book. Finally, the third one, from May 17, 2006, gives a paragraph-long review of the book within a bigger question – what should a blogger do when faced with a stack of books sent kindly by authors and publishers for preview? What should one do if one does not like the book? Under the fold….

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Triangle Bloggers Barbecue

If you are a blogger and you are in the Triangle area of North Carolina this Friday, I hope to see you at the Triangle Bloggers Barbecue. Sign up on the Wiki there if you know you can show up for sure.
Let’s have fun kicking off the Fall ’06 Triangle Blogger Season!

Obligatory Readings of the Day

Archy on how politicians try to create conventional wisdom and on parallels between Balkans and Iraq.
Mr.WD on a new moevement within Christianity – Postmodern Christianity (part I).
Publius on the NSA ruling: Part I, Part II, Part III. Lindsay disagrees with some of his points.
Lance on ‘conservative’ movies and the Western ideal of beauty and what it says about the person holding it.
Jill is back from trekking around the Balkans and has a good one up – Tradition, Family and Property.
Melissa on The Oldest Profession.
Amanda on Nunberg’s Talking Left and Projection.
Pam has a personal experience with the stupidity of the recent airline (Cinnabon) security and encounters Minds that need to be washed out with soap.
The surgeon who worked to save Kentucky Derby winner Barbaro from a broken leg will try to save an Erie Zoo Polar bear, reports Russ.
Echidne on covert enemies, the new CNN poll and the IRS.

Welcome to the new SciBling!

Josh Rosenau has moved from his old Blogger blog to my virtual neighborhood here on Seed. Go check out the brand new version of Thoughts From Kansas!

So, do you like “Five-Day Plans”?

Well, the first five-day plan, all-politics blogging, kinda happened all on Echidne of the Snakes where one post got 120+ comments (mostly nasty) while the same post here got 5 nice comments. So, you pretty much missed out on all the fun if you just came here.
The second five-day plan, all about clocks is now officially over. I could not resist, of course, jumping in with short posts on other topics every now and then, which was probably refreshing for those not too heavily into nitty-gritty chronobiology.
So, tell me, do you like 5-day plans or not? And if so, what should be the next week’s theme?
I was thinking about doing a week of book reviews since I have read a bunch of good stuff recently (and not so recently). As you know, I like to do book reviews NYRB-style, using a book review as a pretext and excuse to grind my own axes. So far, I have posted (or re-posted) only my reviews of Biased Embryos and Evolution by Wallace Arthur, Evolution’s Rainbow by Joan Roughgarden, George Lakoff’s Moral Politics and E.J.Graff’s What Is Marriage For? and Five Fists of Science by Matt Fraction and Steven Sanders.
I could re-post the old reviews of “Changing Minds” by Howard Gardner, “Collapse” by Jared Diamond, “The Postman” by David Brin, Max Barry’s “Jennifer Government”, Greg Bear’s “Darwin’s Radio” and Darwin’s Children”, “The Sex Lives Of Teenagers” by Lynn Ponton and “The Cultural Origins of Human Cognition” by Michael Tomasello. I could also re-post (and update) my “favourite” lists on politics, science and clocks/sleep.
Then, I could sit down and write about “Intuition” by Allegra Goodman, “Ira Foxglove” by Thomas McMahon, “Omnivore’s Dillema” by Michael Pollan, “Institutionalized” by Fred Smith and Joe Schmoe and”Holy Cows & Hog Heaven” by Joel Salatin. If I still had time and energy, I could go back in time and review books I read earlier but never reviewed, e.g., “The Wimp Factor” by Stephen Ducat”, “Marriage – A History” by Stephanie Coontz, “Republican War on Science” by Chris Mooney (I may want to wait until the paperback arrives, though), “Superpatriotism” by Michael Parenti, etc.
What do you think?

All-Clocks-All-Week is now officially over

I know most visitors do not read longer posts, especially not posts on arcane topics likeentrainment of circadian rhythms which filled this blog all week long.
But I wrote them for myself and everything else is profit. I wrote them because I wanted to hype myself for my own Dissertation writing. Even if no one reads those posts, I feel better having written them.
This whole exercise was quite instructive to me. Re-reading my old papers again, after 4-5 years made me see them in a different light. Compare, if you are interested, the way I described the data in my papers to the way I described them in blog posts! With a 20-20 hindsight, I now emphasize some things that I barely mentioned in the papers, while not paying too much attention to the ideas described at length in the papers.
When you just start out on some work and design a series of experiments, you live in that naive, megalomaniacal world in which you believe that all the experiments will work perfectly and the results will turn out exactly as you expect, confirming your brilliant new hypothesis.
A couple of years later, when all is done, you are feeling more than a little down. Several experiments did not work at all. Some worked as expected but the stats are not as clear-cut as you hoped for. Others worked fine but the results do not agree with your pet hypothesis. But data need to ger published so you sit down and explain them, although your heart has not completely changed your mind yet at the time.
But a few years later, bad experiments forgotten, it is easy to look at the work more objectively. Now I know not only what was published before, but also what was published after (and what I did subsequently and did not publish yet). I now know how the other people responded to my papers, who cited them and what for, and how the work slowly changed my own thinking on the topic. Now I look back at them and think – hey, they are not Science/Nature material but they are good, certainly not as bad as I thought they were back then.
I guess that is one part of the learning experience of graduate school – learning to live with a mismatch between expectations and reality and learn to cherish what you got.
Also, in a blog post, I could also give you behind-the-scenes story of how the paper came about in the first place, the true motivations for doing the work, exactly who did what (instead of just a line-up of co-authors), if there was ant competition or colaboration involved, how the work influenced our thinking long-term, and wild speculations that do not directly flow from the data but are only inspired by them.
We’ll get back to normal programming next week…. and of course some Firday Weird Sex Blogging later tonight.

Happy second blogiversary to me.

No, not here, but I wrote my first post on my first blog on Wednesday, August 18, 2004.
2144 posts on Science And Politics
220 posts on Circadiana
76 posts on The Magic School Bus
498 posts on A Blog Around The Clock

StoryBlogging, AIDSblogging and more….

StoryBlogging, AIDSblogging and more[Slightly edited post from May 04, 2006] Collecting stories has become a really exciting endeavor lately. While writing down people’s stories has been done since time immemorial, on stone tablets, clay tablets and papyrus scrolls, the modern technology allows more people to record oral and written histories than ever before.
Everyone can now write, make an audio or video recording, and publish their life stories. We can tap into the wisdom of the elders and preserve their memories for posterity. The history will not be written only by winners, and, gasp, by semi-automated textbook-writing committees, but by many, many eye-witnesses of the events, each bringing in something personal, a slightly different perspective, a new anecdote, a curious fact or a piece of trivia.
It is really exciting to see how many people are investing much of their time and energy on making modern technologies available for recording history.
For instance, Junior League of Durham and Orange Counties’s REACH OUT TO SENIORS campaign is collecting stories by and about local senior citizens.
Dick Gordon’s new NPR radio show, The Story lets people tell their stories on the air, and saves them as podcasts on their WUNC page.
StoryCorps makes it easy for everyone to record and publish audio interviews. Log on to their site and find out if a StoryBooth will be close to you soon.
The Remembering Site and Our Story make it easy to publish your writings and pictures and helps you write your stories and biographies.
Finally, many people have used standard blogging platforms (as well as services like Flickr) to write their stories, publish their podcasts, photographs and videos. As the number of blogs increases exponentially, it is hard to keep track of the break-down of blog types, but I suspect that most blogs are still of the ‘personal journal’ type, .i.e. storyblogging.
Here in NC, Anton Zuiker is spearheading the effort to get people to record their memories and stories on blogs. Most definitely check out his Storyblogging blog for news and updates and for information on how to get involved.
What I am really interested in are travelogues – stories of people who have been abroad and stayed there for a while, not as tourists, but integrated into the local communities, perhaps doing some work there. Scientists doing fieldwork. Soldiers stationed abroad. Doctors Without Borders surely have stories to tell. Anyone who has ever experienced jet-lag and culture-shock.
A friend of mine is about to leave for Honduras as a part of the World Camp for Kids program. I tried to warm her up to the idea that many people would be interested in reading the stories about her experiences there and that a blog is the easiest, chepaest, quickest and most reliable medium to do so. I did not have much time, but I hope that the idea lingers in her mind and perhaps, one day, becomes a reality.
Another friend went to Ghana over two summers. The first summer, she did the research on the local women’s knowledge and understanding of AIDS and attitudes towards sex. The second summer, she utilized the results of her research to work on HIV/AIDS and sex education for local women. After graduation, she went to Lesotho for a year to do the same thing – education of local women about AIDS.
While she was gone, it was diffult to stay in touch. I thought a million times how great it would be if she had a blog that she could update every now and then, whenever she could get online. I’d like to hear her stories about the first impressions of Africa, the biggest culture shocks, the most interesting people she got to know there, the most common (as well as most surprising or outlandish) misperceptions women have about AIDS and about sex, about difference between Ghana and Lesotho, about changed perceptions on America and her own life, and much, much more.
I wish she could have run something like The Nata village blog, or, more ambitiously, the Blogswana project, in which one healthy and one AIDS pateint – both Botswanans – will be paired up and blogging together and for each other about Africa, AIDS and blogging.
Perhaps it is not too late. She is now back in the USA, but already gone ot of NC. I’ll try to persuade her to write her stories now – it is never too late and it does not need to be “fresh”. Better late than never.
Good memories, well written, are what is important. I’ll try to get her to start a blog and if she does I will link to it to let you know. Or, alternatively, I could get her to write a guest-post here every now and then and tap into my ready-made pool of regular readers.
[Edit: Don’t you just love adventures of Kevin in China?]
So, do you have a cool story to tell?

Woomers are Back to The Woom

KateWD: Eggplants and Exploitation
Mr.WD: Talkin’ Tut: ‘magic’ and ‘Africans’

Blog-post as a scientific reference

TITLEThe post coming immediately after this is, as far as I know, the only blog post so far that appeared in the List Of References of a scientific paper.
A guideline for analyzing circadian wheel-running behavior in rodents under different lighting conditions by Corinne Jud, Isabelle Schmutz, Gabriele Hampp, Henrik Oster and Urs Albrecht is an excellent article on methodology (and reasoning behind it) of basic circadian research. It was published in an online open-source journal Biological Procedures Online. I strongly recommend it to my readers.
The Reference #16 is to this post on Circadiana. Coming up on this blog in one hour!

Obligatory Reading of the Day – Academic Blogging

Fred Stuzman: Blogging: Academia’s Digital Divide?:

Considering the value my blog has added to my academic experience, I tend to believe that academic blogs will eventually mainstream. Their acceptance will take some time, but the value provided by blogging – in terms of connecting with others, the public debate, the real dialogue that emerges – will be self-evident. Of course, some things will never change – being a good blogger will always take effort, and not all of us need to blog. However, as we see models develop for academic blogging, it stands that more and more of us will want to take advantage of the benefits.

While science blogging has some specifics that make it different from social science/liberal arts part of the campus, Fred’s notes are quite applicable to us as well.

Quick Break from All-Clock Blogging for some news…

Go say Hello to the newest addition to the Seed ScienceBlogs stable, The Scientific Indian.
Grand Rounds 2.46 are up on Hospital Impact. My readers will probably appreciate the entry on sleep disorders by rdoctor.

Tar Heel Tavern

Tar Heel Tavern #77 is up on Another Blue Puzzle Piece. The theme is “the future is now” and it creatively done.

Tar Heel Tavern – call for submissions

Next Tar Heel Tavern will be hosted tonight (Saturday) by etbnc (one of my most frequent commenters) on My Blue Puzzle Piece. The theme is “the future”:

That can include predictions, prescriptions, hopes, dreams, near future, far future, middlin’ future, back to…etc.

Send your entries to: tht70 AT nc DOT rr DOT com

No One Cares About Your Blog

I guess the people at Belk only read personal diaries and Wingnut blogs. They should come visit Scienceblogs sometimes.
no%20one%20cares%20about%20your%20blog.jpg
(hat-tip:Ed)

ConvergeSouth 2006

The second ConvergeSouth conference on blogging and journalism will be held on the NC A&T University in Greensboro, NC on Saturday, October 14, 2006. Check out the homepage and blog and register soon. It is going to be even more of an Unconference than last year.
Although it is expected that many in attendance will be from the vibrant local blogging community, it is by no means restricted to the South. Last year, we had people coming in from California, New England and abroad, so if you are interested in the blogging/podcasting world, this is a place to be.
I have blogged about the last year’s ConvergeSouth, both as a whole and specific sessions, which you can check out here, here, here, here, here, here, here, here, here, here and here.
If you have any questions, or want to propose a topic for a session, contact Sue or Ed as they are the people “in the know” there.
Technorati Tag: ConvergeSouth

AIDS at 25

Seed ScienceBlogs are liveblogging the 16th International AIDS Conference in Toronto from August 13th-18th.
Two special correspondents on the ground, and our own Tara Smith of Aetiology will post daily commentary on a blog specially dsigned for this occasion – AIDS at 25.
Quite fittingly, the AskTheScienceBlogger question of the week is also about AIDS, and I am sure that a number of my SciBlings will write about the topic in addition to just answering the question, so you will have plenty of opportunity to be informed and educated about AIDS over the next several days. And, if you have not done this yet, this may be a good time to make Scienceblogs.com one of your Technorati favourites.

Say Hi To The New SciBling

The most recent addition to the stable of Seed ScienceBloggers is Molecule Of The Day – better living through chemistry! Go say Hello!

Say Hi To Archy

In less than two weeks, Archy (the person – John McKay, not the blog, nor the cockroach) is going to have a biiiiiig birthday party.
He is not asking for presents – he only wants you to come to his place for the party and help him reach a goal.
And while you are there, you are supposed to look around and read – there is a lot of good stuff there!

Science blogs, rested and refreshed

The Archaean Zone (formerly known as Wolverine Tom), Sporulaand Complex Medium are back in action after longish hiatus.