ClockQuotes

There is no well-defined boundary between honesty and dishonesty. The frontiers of one blend with the outside limits of the other, and he who attempts to tread this dangerous ground may be sometimes in one domain and sometimes in the other.
– O. Henry

My picks from ScienceDaily

Living Upside-down Shapes Spiders For Energy Saving:

An interdisciplinary team of researchers from Spain and Croatia led an investigation into the peculiar lifestyle of numerous spider species, which live, feed, breed and ‘walk’ in an upside-down hanging position. According to their results, such ‘unconventional’ enterprise drives a shape in spiders that confers high energy efficiency, as in oscillatory pendulums.

Space Tourism: Suborbital Vehicle Expected To Fly Within Two Years:

A small California aerospace company has just unveiled a new suborbital spaceship that will provide affordable front-seat rides to the edge of space for the millions of people who want to buy a ticket.

Primitive Mouse-Like Creature May Be Ancestral Mother Of Australia’s Unusual Pouched Mammals:

They are separated by a vast ocean and by millions of years, but tiny prehistoric bones found on an Australian farm have been directly linked to a strange and secretive little animal that lives today in the southern rainforests of South America.

Red Flour Beetle’s Genome Sequenced For The First Time:

An international research consortium with the participation of a research team led by Professor Cornelis Grimmelikhuijzen from the Department of Biology, has sequenced the genome from the red flour beetle Tribolium castaneum. Tribolium is the first beetle and the first insect pest, whose genome has been sequenced. This research may have a big impact on agriculture.

Bear Spray A Viable Alternative To Guns For Deterring Bears, Study Shows:

Hikers and campers venturing into bear country this spring may be safer armed with 8-ounce cans of bear pepper spray than with guns, according to a new study led by a Brigham Young University bear biologist.

Today’s carnivals

The Four Stone Hearth #37 – The Pulp SciFi Edition – is up on Hot Cup Of Joe
The Skeptic’s Circle – Every One Of You Is Expelled! – is up on Mike’s Weekly Skeptic Rant
Grand Rounds Volume 4 No. 27 are up on monash medical student
165 Carnival of Education-Teachers Gone Wild Spring Break Edition – is up on Bellringers
The 117th Carnival of Homeschooling is up on Phat Mommy

ClockQuotes

The force of the blow depends on the resistance. It is sometimes better not to struggle against temptation. Either fly or yield at once.
– Francis H. Bradley

NIH public access mandate

Scared publishers ask for a hearing and get an earful:

Librarians and educators, meanwhile, strongly defended the NIH policy-and spoke of the lengthy process of consideration it has already gone through, urging that implementation now proceed as planned. In its comments, SPARC reiterated that all stakeholders have had ample time to consider the policy dating back to 2004. SPARC said that it has, along with many other stakeholders, created “several programs to help to pave the way for the smooth implementation of the revised policy,” including a range of educational initiatives and practical tools. It also took aim at publishers seeking to block the policy, stating that “a small but vocal number of publishers continue to make the misleading and incorrect assertion that this policy will somehow put authors into conflict with copyright law.”

Read the whole thing and read the comments here.

Triangle Research Libraries Network Launches New Search Function

From the Library Journal:

The Triangle Research Libraries Network (TRLN) pioneered the nation’s first consortial online catalog back in the 1980s, and this week, took that legacy a step further with the launch of “Search TRLN”, which officials say adds “next-generation search capabilities” to the consortium’s combined collection of 16 million volumes. Search TRLN, is a new single-interface discovery tool, enabling users to search across the entire collections of the four member institutions: Duke University, North Carolina Central University, North Carolina State University, and the University of North Carolina at Chapel Hill. It takes advantage of the “faceted searching” and browsing capabilities of Endeca software, and builds on the traditional strengths of TRLN’s cooperative collecting and interlibrary delivery services. In a release, TRLN officials described Search TRLN a “one-stop access to the entire body of TRLN’s collections.”

How to talk to rightwing suckers

Some people only know the language of power. They see conciliation and compromise as weakness. Show strength. If they are sissies hiding behind machismo, slam them hard. You have nothing to lose. Some will convert and come to your side. Some will go cower in the corner. None will hang around risking your anger for very long.
Sometimes, profanity is the only appropriate language:

“On a related note, fearing that we face a whole new level of bullshit about which we will, and should, be visibly angry, and preparing myself thusly, comments and emails composed specifically to tell me to stop using bad language or to start being less aggressive, less hostile, less antagonistic, less bitchy, less arrogant, less belligerent, less vitriolic, less nasty, less acerbic, or less of a poopyhead, are as welcome as any other, but I feel obligated to inform all potential authors of such missives that they are, however, a waste of time. If I get my facts wrong, let me know. If you don’t like my tone, tough. At this bus stop in the blogosphere, I’m Queen Cunt of Fuck Mountain, and I’m mean for a reason. Once we get our country back on the right track, there will plenty of time for nursery rhymes.”

Are you addicted to the Internet?

While I don’t think there is such a thing as Internet Addiction, doing this quick test is fun:

“Your Internet usage is causing significant problems in your life. You should evaluate the impact of the Internet on your life and address the problems directly caused by your Internet usage.”

Nostalgia…, part 2

Elephants successfully avoid landmines

Elephants avoiding mines:

Eliminated from Angola during more than two decades of civil war, herds of African elephants are crossing heavily mined fields as they recolonize Angola from neighboring Namibia and Botswana.
But miraculously, they are avoiding the mines entirely, according to researchers at University of Massachusetts in Amherst who are tracking them via global positioning system satellites.

Hat-tip.

My picks from ScienceDaily

Americans Sleeping More, Not Less, Says New Study

Contrary to conventional wisdom, Americans average as much sleep as they did 40 years ago, and possibly more, according to University of Maryland sociologists.

Yes, when you suddenly start including the unemployed in the study.
Mantis Shrimp Vision Reveals New Way That Animals Can See:

Mantis shrimp can see the world in a way that had never been observed in any animal before, researchers report in the March 20th Current Biology, a Cell Press publication. The discovery–which marks the fourth type of visual system–suggests that the ability to perceive circular polarized light may lend mantis shrimp a secret mode of communication.

Ants Are Experienced Fungus Farmers:

It turns out ants, like humans, are true farmers. The difference is that ants are farming fungus.

Delicate Partnership Between Coral And Algae Threatened By Global Warming:

Over two hundred million humans depend for their subsistence on the fact that coral has an addiction to ‘junk food’ – and orders its partners, the symbiotic algae, to make it.

Insects Take A Bigger Bite Out Of Plants In A Higher Carbon Dioxide World:

Atmospheric carbon dioxide levels are rising at an alarming rate, and new research indicates that soybean plant defenses go down as CO2 goes up. Elevated CO2 impairs a key component of the plant’s defenses against leaf-eating insects, according to the report.

New and Exciting in PLoS ONE

Bunch of new, cool stuff in PLoS ONE today – here are the titles that piqued my curiosity (and you know the spiel: rate, note, comment, trackback):
Australia’s Oldest Marsupial Fossils and their Biogeographical Implications:

We describe new cranial and post-cranial marsupial fossils from the early Eocene Tingamarra Local Fauna in Australia and refer them to Djarthia murgonensis, which was previously known only from fragmentary dental remains. The new material indicates that Djarthia is a member of Australidelphia, a pan-Gondwanan clade comprising all extant Australian marsupials together with the South American microbiotheres. Djarthia is therefore the oldest known crown-group marsupial anywhere in the world that is represented by dental, cranial and post-cranial remains, and the oldest known Australian marsupial by 30 million years. It is also the most plesiomorphic known australidelphian, and phylogenetic analyses place it outside all other Australian marsupials. As the most plesiomorphic and oldest unequivocal australidelphian, Djarthia may approximate the ancestral morphotype of the Australian marsupial radiation and suggests that the South American microbiotheres may be the result of back-dispersal from eastern Gondwana, which is the reverse of prevailing hypotheses.

Morphological Evolution of Spiders Predicted by Pendulum Mechanics:

Animals have been hypothesized to benefit from pendulum mechanics during suspensory locomotion, in which the potential energy of gravity is converted into kinetic energy according to the energy-conservation principle. However, no convincing evidence has been found so far. Demonstrating that morphological evolution follows pendulum mechanics is important from a biomechanical point of view because during suspensory locomotion some morphological traits could be decoupled from gravity, thus allowing independent adaptive morphological evolution of these two traits when compared to animals that move standing on their legs; i.e., as inverted pendulums. If the evolution of body shape matches simple pendulum mechanics, animals that move suspending their bodies should evolve relatively longer legs which must confer high moving capabilities. We tested this hypothesis in spiders, a group of diverse terrestrial generalist predators in which suspensory locomotion has been lost and gained a few times independently during their evolutionary history. In spiders that hang upside-down from their webs, their legs have evolved disproportionately longer relative to their body sizes when compared to spiders that move standing on their legs. In addition, we show how disproportionately longer legs allow spiders to run faster during suspensory locomotion and how these same spiders run at a slower speed on the ground (i.e., as inverted pendulums). Finally, when suspensory spiders are induced to run on the ground, there is a clear trend in which larger suspensory spiders tend to run much more slowly than similar-size spiders that normally move as inverted pendulums (i.e., wandering spiders). Several lines of evidence support the hypothesis that spiders have evolved according to the predictions of pendulum mechanics. These findings have potentially important ecological and evolutionary implications since they could partially explain the occurrence of foraging plasticity and dispersal constraints as well as the evolution of sexual size dimorphism and sociality.

Cellular Responses in Sea Fan Corals: Granular Amoebocytes React to Pathogen and Climate Stressors:

Climate warming is causing environmental change making both marine and terrestrial organisms, and even humans, more susceptible to emerging diseases. Coral reefs are among the most impacted ecosystems by climate stress, and immunity of corals, the most ancient of metazoans, is poorly known. Although coral mortality due to infectious diseases and temperature-related stress is on the rise, the immune effector mechanisms that contribute to the resistance of corals to such events remain elusive. In the Caribbean sea fan corals (Anthozoa, Alcyonacea: Gorgoniidae), the cell-based immune defenses are granular acidophilic amoebocytes, which are known to be involved in wound repair and histocompatibility. We demonstrate for the first time in corals that these cells are involved in the organismal response to pathogenic and temperature stress. In sea fans with both naturally occurring infections and experimental inoculations with the fungal pathogen Aspergillus sydowii, an inflammatory response, characterized by a massive increase of amoebocytes, was evident near infections. Melanosomes were detected in amoebocytes adjacent to protective melanin bands in infected sea fans; neither was present in uninfected fans. In naturally infected sea fans a concurrent increase in prophenoloxidase activity was detected in infected tissues with dense amoebocytes. Sea fans sampled in the field during the 2005 Caribbean Bleaching Event (a once-in-hundred-year climate event) responded to heat stress with a systemic increase in amoebocytes and amoebocyte densities were also increased by elevated temperature stress in lab experiments. The observed amoebocyte responses indicate that sea fan corals use cellular defenses to combat fungal infection and temperature stress. The ability to mount an inflammatory response may be a contributing factor that allowed the survival of even infected sea fan corals during a stressful climate event.

Seeing ‘Where’ through the Ears: Effects of Learning-by-Doing and Long-Term Sensory Deprivation on Localization Based on Image-to-Sound Substitution:

Sensory substitution devices for the blind translate inaccessible visual information into a format that intact sensory pathways can process. We here tested image-to-sound conversion-based localization of visual stimuli (LEDs and objects) in 13 blindfolded participants. Subjects were assigned to different roles as a function of two variables: visual deprivation (blindfolded continuously (Bc) for 24 hours per day for 21 days; blindfolded for the tests only (Bt)) and system use (system not used (Sn); system used for tests only (St); system used continuously for 21 days (Sc)). The effect of learning-by-doing was assessed by comparing the performance of eight subjects (BtSt) who only used the mobile substitution device for the tests, to that of three subjects who, in addition, practiced with it for four hours daily in their normal life (BtSc and BcSc); two subjects who did not use the device at all (BtSn and BcSn) allowed assessment of its use in the tasks we employed. The impact of long-term sensory deprivation was investigated by blindfolding three of those participants throughout the three week-long experiment (BcSn, BcSn/c, and BcSc); the other ten subjects were only blindfolded during the tests (BtSn, BtSc, and the eight BtSt subjects). Expectedly, the two subjects who never used the substitution device, while fast in finding the targets, had chance accuracy, whereas subjects who used the device were markedly slower, but showed much better accuracy which improved significantly across our four testing sessions. The three subjects who freely used the device daily as well as during tests were faster and more accurate than those who used it during tests only; however, long-term blindfolding did not notably influence performance. Together, the results demonstrate that the device allowed blindfolded subjects to increasingly know where something was by listening, and indicate that practice in naturalistic conditions effectively improved “visual” localization performance.

Isotope Analysis Reveals Foraging Area Dichotomy for Atlantic Leatherback Turtles:

The leatherback turtle (Dermochelys coriacea) has undergone a dramatic decline over the last 25 years, and this is believed to be primarily the result of mortality associated with fisheries bycatch followed by egg and nesting female harvest. Atlantic leatherback turtles undertake long migrations across ocean basins from subtropical and tropical nesting beaches to productive frontal areas. Migration between two nesting seasons can last 2 or 3 years, a time period termed the remigration interval (RI). Recent satellite transmitter data revealed that Atlantic leatherbacks follow two major dispersion patterns after nesting season, through the North Gulf Stream area or more eastward across the North Equatorial Current. However, information on the whole RI is lacking, precluding the accurate identification of feeding areas where conservation measures may need to be applied. Using stable isotopes as dietary tracers we determined the characteristics of feeding grounds of leatherback females nesting in French Guiana. During migration, 3-year RI females differed from 2-year RI females in their isotope values, implying differences in their choice of feeding habitats (offshore vs. more coastal) and foraging latitude (North Atlantic vs. West African coasts, respectively). Egg-yolk and blood isotope values are correlated in nesting females, indicating that egg analysis is a useful tool for assessing isotope values in these turtles, including adults when not available. Our results complement previous data on turtle movements during the first year following the nesting season, integrating the diet consumed during the year before nesting. We suggest that the French Guiana leatherback population segregates into two distinct isotopic groupings, and highlight the urgent need to determine the feeding habitats of the turtle in the Atlantic in order to protect this species from incidental take by commercial fisheries. Our results also emphasize the use of eggs, a less-invasive sampling material than blood, to assess isotopic data and feeding habits for adult female leatherbacks.

Tool-Use Training in a Species of Rodent: The Emergence of an Optimal Motor Strategy and Functional Understanding:

Tool use is defined as the manipulation of an inanimate object to change the position or form of a separate object. The expansion of cognitive niches and tool-use capabilities probably stimulated each other in hominid evolution. To understand the causes of cognitive expansion in humans, we need to know the behavioral and neural basis of tool use. Although a wide range of animals exhibit tool use in nature, most studies have focused on primates and birds on behavioral or psychological levels and did not directly address questions of which neural modifications contributed to the emergence of tool use. To investigate such questions, an animal model suitable for cellular and molecular manipulations is needed. We demonstrated for the first time that rodents can be trained to use tools. Through a step-by-step training procedure, we trained degus (Octodon degus) to use a rake-like tool with their forelimbs to retrieve otherwise out-of-reach rewards. Eventually, they mastered effective use of the tool, moving it in an elegant trajectory. After the degus were well trained, probe tests that examined whether they showed functional understanding of the tool were performed. Degus did not hesitate to use tools of different size, colors, and shapes, but were reluctant to use the tool with a raised nonfunctional blade. Thus, degus understood the functional and physical properties of the tool after extensive training. Our findings suggest that tool use is not a specific faculty resulting from higher intelligence, but is a specific combination of more general cognitive faculties. Studying the brains and behaviors of trained rodents can provide insights into how higher cognitive functions might be broken down into more general faculties, and also what cellular and molecular mechanisms are involved in the emergence of such cognitive functions.

Regulation of the Neural Circuitry of Emotion by Compassion Meditation: Effects of Meditative Expertise:

Recent brain imaging studies using functional magnetic resonance imaging (fMRI) have implicated insula and anterior cingulate cortices in the empathic response to another’s pain. However, virtually nothing is known about the impact of the voluntary generation of compassion on this network. To investigate these questions we assessed brain activity using fMRI while novice and expert meditation practitioners generated a loving-kindness-compassion meditation state. To probe affective reactivity, we presented emotional and neutral sounds during the meditation and comparison periods. Our main hypothesis was that the concern for others cultivated during this form of meditation enhances affective processing, in particular in response to sounds of distress, and that this response to emotional sounds is modulated by the degree of meditation training. The presentation of the emotional sounds was associated with increased pupil diameter and activation of limbic regions (insula and cingulate cortices) during meditation (versus rest). During meditation, activation in insula was greater during presentation of negative sounds than positive or neutral sounds in expert than it was in novice meditators. The strength of activation in insula was also associated with self-reported intensity of the meditation for both groups. These results support the role of the limbic circuitry in emotion sharing. The comparison between meditation vs. rest states between experts and novices also showed increased activation in amygdala, right temporo-parietal junction (TPJ), and right posterior superior temporal sulcus (pSTS) in response to all sounds, suggesting, greater detection of the emotional sounds, and enhanced mentation in response to emotional human vocalizations for experts than novices during meditation. Together these data indicate that the mental expertise to cultivate positive emotion alters the activation of circuitries previously linked to empathy and theory of mind in response to emotional stimuli.

Genome-Wide Detection of Serpentine Receptor-Like Proteins in Malaria Parasites:

Serpentine receptors comprise a large family of membrane receptors distributed over diverse organisms, such as bacteria, fungi, plants and all metazoans. However, the presence of serpentine receptors in protozoan parasites is largely unknown so far. In the present study we performed a genome-wide search for proteins containing seven transmembrane domains (7-TM) in the human malaria parasite Plasmodium falciparum and identified four serpentine receptor-like proteins. These proteins, denoted PfSR1, PfSR10, PfSR12 and PfSR25, show membrane topologies that resemble those exhibited by members belonging to different families of serpentine receptors. Expression of the pfsrs genes was detected by Real Time PCR in P. falciparum intraerythrocytic stages, indicating that they potentially code for functional proteins. We also found corresponding homologues for the PfSRs in five other Plasmodium species, two primate and three rodent parasites. PfSR10 and 25 are the most conserved receptors among the different species, while PfSR1 and 12 are more divergent. Interestingly, we found that PfSR10 and PfSR12 possess similarity to orphan serpentine receptors of other organisms. The identification of potential parasite membrane receptors raises a new perspective for essential aspects of malaria parasite host cell infection.

ClockQuotes

The function of a briefing paper is to prevent the ambassador from saying something dreadfully indiscreet. I sometimes think its true object is to prevent the ambassador from saying anything at all.
– Kingman Brewster, Jr

Carrboro Citizen is One

My favourite newspaper has been publishing for a year now. . Robert Dickson and Kirk Ross mark the anniversary. Newspaper is not dead.

My picks from ScienceDaily

New Zealand’s ‘Living Dinosaur’ — The Tuatara — Is Surprisingly The Fastest Evolving Animal:

In a study of New Zealand’s “living dinosaur” the tuatara, evolutionary biologist, and ancient DNA expert, Professor David Lambert and his team from the Allan Wilson Centre for Molecular Ecology and Evolution recovered DNA sequences from the bones of ancient tuatara, which are up to 8000 years old. They found that, although tuatara have remained largely physically unchanged over very long periods of evolution, they are evolving – at a DNA level – faster than any other animal yet examined.

See more….
Computers Show How Bats Classify Plants According To Their Echoes:

Researchers have developed a computer algorithm that can imitate the bat’s ability to classify plants using echolocation. The study represents a collaboration between machine learning scientists and biologists studying bat orientation.

Language Feature Unique To Human Brain Identified:

Researchers at the Yerkes National Primate Research Center, Emory University, have identified a language feature unique to the human brain that is shedding light on how human language evolved. The study marks the first use of diffusion tensor imaging (DTI), a non-invasive imaging technique, to compare human brain structures to those of chimpanzees, our closest living relative.

Unlocking The Psychology Of Snake And Spider Phobias:

University of Queensland researchers have unlocked new evidence that could help them get to the bottom of our most common phobias and their causes. Hundreds of thousands of people count snakes and spiders among their fears, and while scientists have previously assumed we possess an evolutionary predisposition to fear the unpopular animals, researchers at UQ’s School of Psychology may have proved otherwise.

Today’s carnivals

Accretionary Wedge #7 is up on Magma Cum Laude
Carnival of the Green #120 is up on Victoria E

New and Exciting in PLoS Medicine and PLoS Biology

Circadian Remodeling of Neuronal Circuits Involved in Rhythmic Behavior:

Circadian systems evolved as a mechanism that allows organisms to adapt to the environmental changes in light and dark which occur as a consequence of the rotation of Earth. Because of its unique repertoire of genetic tools, Drosophila is a well established model for the study of the circadian clock. Although the biochemical components underlying the molecular oscillations have been characterized in detail, the mechanisms used by the clock neurons to convey information to the downstream pathways remain elusive. In the fruit fly, the small ventral lateral neurons (LNv) are capable of synchronizing other clock cells relying on a neuropeptide named pigment dispersing factor. In this work we introduce a novel mechanism as a possible candidate for contributing to the transmission of information downstream of the small LNvs, involving clock-controlled remodeling of their axonal morphology. By labeling the entire neuronal membrane and analyzing the complexity of the axonal arbor at different times we showed that there is a circadian variation in the complexity of the axonal arbor. This phenomenon was not observed in flies carrying null mutations in two canonical clock genes, underscoring the dependence of the circadian clock for the structural plasticity of its pacemaker neurons.

It’s the Network, Stupid: Why Everything in Medicine Is Connected:

Once the domain of social scientists–who have used social network analysis to study such diverse phenomena as kinship ties, organizational behavior, rumor spreading, and global air traffic–network theory has now entered the purview of health scientists. Network theory is concerned with mapping the links between entities, and social network analysis is the application of that theory to the social sciences. Searching for more social and environmental explanations for the obesity epidemic in America, for example, Christakis and Fowler [1] showed that obesity can spread from person to person, and that this spread depends on the nature of social ties: a person’s chance of becoming obese increased by 171% if he or she had a mutual friend who had become obese (even if they lived far away). Their risk increased by 40% if it was their sibling or spouse who became obese. Christakis and Fowler concluded that the social network is a crucial component–perhaps more so than genetics–in explaining obesity, a problem normally thought of as solely biological and behavioral.

Social Contacts and Mixing Patterns Relevant to the Spread of Infectious Diseases:

Mathematical modelling of infectious diseases transmitted by the respiratory or close-contact route (e.g., pandemic influenza) is increasingly being used to determine the impact of possible interventions. Although mixing patterns are known to be crucial determinants for model outcome, researchers often rely on a priori contact assumptions with little or no empirical basis. We conducted a population-based prospective survey of mixing patterns in eight European countries using a common paper-diary methodology. 7,290 participants recorded characteristics of 97,904 contacts with different individuals during one day, including age, sex, location, duration, frequency, and occurrence of physical contact. We found that mixing patterns and contact characteristics were remarkably similar across different European countries. Contact patterns were highly assortative with age: schoolchildren and young adults in particular tended to mix with people of the same age. Contacts lasting at least one hour or occurring on a daily basis mostly involved physical contact, while short duration and infrequent contacts tended to be nonphysical. Contacts at home, school, or leisure were more likely to be physical than contacts at the workplace or while travelling. Preliminary modelling indicates that 5- to 19-year-olds are expected to suffer the highest incidence during the initial epidemic phase of an emerging infection transmitted through social contacts measured here when the population is completely susceptible. To our knowledge, our study provides the first large-scale quantitative approach to contact patterns relevant for infections transmitted by the respiratory or close-contact route, and the results should lead to improved parameterisation of mathematical models used to design control strategies.

Triangle Blogger Meetup

Next Triangle blogger meetup is this Wednesday at 6pm at Milltown (307 E. Main St., Carrboro). It is organized by our friends at Orange Politics, for several years the model for local political organizing online. It is likely some of the local politicos and candidates will show up. It is free and open for all and, heck, if you do not want to chat about politics, you don’t have to – we’ll chat about everything and anything anyway, as we usually do 😉

Skeptics in Boston

My SciBling Mike the Mad Biologist will speak tonight at the Boston Skeptics meeting. The title of the talk is “Defending Evolution the Right Way: As a Fundamental Part of Biology and Biomedicine, Not as a Cultural Icon.” so it is bound to be interesting. If you are in Boston tonight at 7pm, go and see it at The Asgard.

ClockQuotes

When nothing seems to help, I go and look at a stonecutter hammering away at his rock perhaps a hundred times without as much as a crack showing in it. Yet at the hundred and first blow it will split in two, and I know it was not that blow that did it, but all that had gone before.
– Jacob August Riis

Around the intertubes….

Teaching Your Spouse or Lover to Speak Serbian
It literally rained mud here last Tuesday
Tales of buffoonery, keys
Can Technology make us Happy?
I will never watch The Simpsons again
The stupid, it burns
EMAIL I wish I had sent
Seminar thoughts
But you punch above your weight and you’re stronger than you look, And the ending’s not the same, they changed it from the book.

Archy is Five

And that is like half of Pleistocene in blogyears….

To my Eastern Orthodox readers… ;-)

Hristos Vaskrese

5000

Yes, this is the 5000th post on this blog. Obviously, I am nuts.

ClockQuotes

Space. The continual becoming: invisible fountain from which all rhythms flow and to which they must pass. Beyond time or infinity.
– Frank Lloyd Wright

My picks from ScienceDaily

Ancient Lemur’s Little Finger Poses Mystery:

Analysis of the first hand bones belonging to an ancient lemur has revealed a mysterious joint structure that has scientists puzzled.

Impaired Sense Of Smell May Be Early Indicator Of Parkinson’s Disease:

Impaired sense of smell occurs in the earliest stages of Parkinson’s disease (PD) and there is mounting evidence that it may precede motor symptoms by several years, although no large-scale studies had confirmed this. In the first study involving the general population, researchers found that smell impairment can precede the development of PD in men by at least four years.

In Poker, Psychologists Place Bets On Skill:

Is it luck of the draw in poker? No, says Michael DeDonno, a doctoral student from Case Western Reserve University. He suggests putting your bets on skills over luck when playing the card game.

Virtual-reality Video Game To Help Burn Patients Play Their Way To Pain Relief:

To a patient recovering from severe burns, no place would be more soothing than a polar landscape of gently falling snowflakes, snowmen, penguins, igloos and icy rivers. That’s the thinking behind SnowWorld, an interactive, virtual-reality video game being used at Loyola University Hospital in Maywood, Ill., to manage pain felt by burn patients during wound care and physical therapy. Loyola is the first hospital in Illinois and only one of a handful across the nation that is employing this 21st century technology to help burn patients recover from their injuries.

Rwanda Conservation Effort To Link Isolated Chimps To Distant Forest:

A group of some 15 chimpanzees isolated in a pocket of Rwandan rain forest will have a greater range — and, thus, greater chances for survival — thanks to one of Africa’s most ambitious forest restoration and ecological research efforts ever. Organizers of the project, named the Rwandan National Conservation Park, said that a 30-mile (50km) tree corridor will be planted to connect the Gishwati Forest Reserve, the chimpanzees’ home range, to Nyungwe National Park.

When things go downhill….

Stolen from here:
when-geek-relationships-get-old.jpg

Meet me in London

If you live in the UK and would like to meet me on April 9th, go here to organize – add a comment with your preferences of place/time/menu/events….

Jablonka & Lamb

Anne-Marie wrote an excellent review of Evolution in Four Dimensions by Eva Jablonka and Marion Lamb.
I tend to think that the use of the term “neo-Lamarckism” (just like the use of “neo-Darwinism“) is unnecessary as it will raise hackles and start linguistic battles instead of invite people to investigate new ways of thinking and new additions to the body of evolutionary theory.
Yes, we now understand that genes are necessary, but not sufficient, for heritability and we are increasingly including development in our accounts of evolution. And as much as I like the Developmental systems theory (DST), I don’t think it needs a new name – it is just an addition to our thinking about biology, a newish and promising angle to use when looking at Life.

It’s just a Theory….

The new edition (first online edition) of Scope, the MIT Grad Program in Science Writing’s student webzine, is out (hat-tip to Tom) with several great articles. Check out, for instance, Words (Just Might) Hurt Me: The Trouble with ‘Theory’.

Around the intertubes….

Emergence Among the Trees
The actual world needs better writers
…but is it the opiate of the masses?
In safe hands
Alan Keyes and other third party news
Sometimes I Cannot Believe What We Have Allowed to be Done in Our Name
Why Aren’t Students Interested in a Career in Science?, Humanistic Science Education and Air Pollution: Regional Influences & the Beijing Olympics
How to reinvent the newspaper business
How to get started in amateur astronomy. Step 1: Get real
Blogging is Subversive and Lessig’s Congressional Fixup Plan
Can Polaroid Sunglasses Help You See Venus in the daytime?
Lighting Up Field Theory
Justice
Legislating Civility: No Cussing Week
Pigshit in space
Lauri Lebo’s Book, ‘The Devil in Dover’
The X2 Club — massively multiplayer science is on the way!
This is what happens when physicists start drinking…
C is for Confrontation

The Invertebrate Wars continue…

with a new comic strip – introducing Pucker and Bloat!

ClockQuotes

Inflation is bringing us true democracy. For the first time in history, luxuries and necessities are selling at the same price.
– Robert Orben

A Cool Million

I know it’s an arbitrary number, but it still looks cool:
million.JPG
(Apparently, the 1000000th and the 1000001st visitors arrived simultaneously). Back when I just started I never thought this was even possible.
The millionth visitor came here from Oakland, California, entered the site at this post, and made 17 pageviews in 6 minutes 4 seconds.

WiSE pictures

The WiSE panel earlier today was fun and informative. On the content – later. Perhaps two other SciBlings who were in the audience will have better renditions anyway. The panel was recorded and once the recording and other blog posts are available, I will give you the links. For now, just pictures (under the fold):

Continue reading

Blogrolling for Today

Undergrad Mind


Neuroanthropology


Halley VI


Digitalna knjiznica Univerze v Ljubljani


Blue Lab Coats


Book of Answers

My picks from ScienceDaily

Giant Panda Mating Season At National Zoo:

The 2008 giant panda mating season began Tuesday, March 18, at the Smithsonian’s National Zoo. Female Mei Xiang (may-SHONG) and male Tian Tian (tee-YEN tee-YEN) attempted to mate throughout the day Tuesday.

The Song Doesn’t Remain The Same In Fragmented Bird Populations:

The song of passerine birds is a conspicuous and exaggerated display shaped by sexual selection in the context of male-male competition or mate attraction. At the level of the individual, song is considered an indicator of male ‘quality’.

Color Vision System Independent Of Motion Detection in Eye Sight:

The vision system used to process color is separate from that used to detect motion, according to a new study by researchers at New York University’s Center for Developmental Genetics and in the Department of Genetics and Neurobiology at Germany’s University of Würzburg. The findings run counter to previous scholarship that suggested motion detection and color contrast may work in tandem.

Happily Marrieds Have Lower Blood Pressure Than Social Singles:

Happily married adults have lower blood pressure than singles with supportive social networks. Both men and women in happy marriages scored four points lower on 24-hour blood pressure than single adults. Having supportive friends did not translate into improved blood pressure for singles or unhappily marrieds.

Animation Aids Psychology In ‘Second Life’ Experiment:

Bournemouth University’s computer animation experts have been awarded a major grant from the Engineering and Physical Sciences Research Council (EPSRC) to support a three-year project linking animation to psychology.

ClockQuotes

I live a day at a time. Each day I look for a kernel of excitement. In the morning I say: What is my exciting thing for today? Then, I do the day. Don’t ask me about tomorrow.
– Barbara Charline Jordan

New and Exciting in PLoS

Plant Classification from Bat-Like Echolocation Signals:

Bats are able to classify plants using echolocation. They emit ultrasonic signals and can recognize the plant according to the echo returning from it. This ability assists them in many of their daily activities, like finding food sources associated with certain plants or using landmarks for navigation or homing. The echoes created by plants are highly complex signals, combining together all the reflections from the many leaves that a plant contains. Classifying plants or other complex objects is therefore considered a troublesome task and we are far from understanding how bats do it. In this work, we suggest a simple algorithm for classifying plants according to their echoes. Our algorithm is able to classify with high accuracy plant echoes created by a sonar head that simulates a typical frequency-modulated bat’s emitting receiving parameters. Our results suggest that plant classification might be easier than formerly considered. It gives us some hints as to which features might be most suitable for the bats, and it opens possibilities for future behavioral experiments to compare its performance with that of the bats.

Evolution of a Core Gene Network for Skeletogenesis in Chordates:

Important molecular mechanisms underlying mammalian skeletogenesis have been described but knowledge about the evolutionary origin of these gene networks is limited. The Runt gene family (Runx1-3) is of extraordinary importance for skeletogenesis. Runx2 deficient mice completely lack bone. Runx2 and Runx3 are essential for cartilage development and Runx2 regulates the key factor Indian hedgehog, which coordinates skeletogenesis. Here, we reconstructed Runt gene evolution in correlation to skeletal evolution. By analyzing lancelets, one of the closest living relatives of vertebrates, we revealed that the single Runt and Hedgehog family founder genes were co-expressed in primitive skeletal elements of the chordate stem species. Interestingly, at this stage the Runt and Hedgehog pathways were already directly linked to one another. Furthermore we isolated two Runt genes from a representative of jawless cartilaginous fish (hagfish) and three Runt genes from jawed cartilaginous fish (dogfish) which were all expressed in cartilage. The dogfish Runt genes were also found in teeth and placoid scales. This study suggests that Runt genes were involved in all ancient processes of chordate skeletogenesis. Furthermore the analysis supports the theory that most likely the gut was the tissue that originally secreted an acellular gill gut skeleton in the chordate ancestor.

Partial Loss of Face Recognition may be Associated with the ID(C) Locus: A Case Study

The latest case study can be found here.

The Invertebrate Wars!

Here we go again! Who is cooler, Echinoderms or Molluscs? You decide for yourself, but I have decided a long time ago:
Sea Cucumber
Sea Cucumber
Sea Cucumber
Sea Cucumber
Sea Cucumber
Sea Cucumber
Sea Cucumber
Sea Cucumber
Sea Cucumber
Sea Cucumber

Welcome the newest SciBling!

Denialism blog has a new co-blogger. Go say Hello to PalMD.

Science of Beer, Redux

Remember this study from last month? Well, apparently NYTimes picked up on it and now all the bloggers are picking it apart – see what Dave Bacon, Jake Young and Mark Hoofnagle have to say. I think this study, started as a joke, is about to be revisited seriously with a huge data-set and various strict controls. As long as someone manages to get NIH to pay for all the beer.

My picks from ScienceDaily

What Gets A Female’s Attention, At Least A Songbird’s:

Male songbirds produce a subtly different tune when they are courting a female than when they are singing on their own. Now, new research offers a window into the effect this has on females, showing they have an ear for detail. The finding provides insights not only into the intricacies of songbird attraction and devotion but also into the way in which the brain develops and responds to social cues, in birds — and humans.

Oldest Cretaceous Period Dinosaur Discovered Represents New Genus Of Prehistoric Aquatic Predator:

One of the oldest and most complete plesiosaur fossils recovered in North America, and the oldest yet discovered from the Cretaceous Period, represents a new genus of the prehistoric aquatic predator according to University of Calgary palaeontologists who have formally described the creature after its remains were uncovered in a Syncrude Canada Ltd. mine near Fort McMurray in 1994.

Skulls Of Modern Humans And Ancient Neanderthals Evolved Differently Because Of Chance, Not Natural Selection:

New research led by UC Davis anthropologist Tim Weaver adds to the evidence that chance, rather than natural selection, best explains why the skulls of modern humans and ancient Neanderthals evolved differently. The findings may alter how anthropologists think about human evolution.

Rethinking Early Evolution: Earth’s Earliest Animal Ecosystem Was Complex And Included Sexual Reproduction:

Two paleontologists studying ancient fossils they excavated in the South Australian outback argue that Earth’s ecosystem has been complex for hundreds of millions of years — at least since around 565 million years ago, which is included in a period in Earth’s history called the Neoproterozoic era.

Men And Women Have Different Eating Habits, Study Shows:

When it comes to what we eat, men and women really are different according to scientific research presented today (March 19) at the 2008 International Conference on Emerging Infectious Diseases in Atlanta, Georgia. In general, men are more likely to report eating meat and poultry items and women are more likely to report eating fruits and vegetables.

Cause Of Death Of Russian Baby Mammoth Discovered:

On September 27, 2004, the front part of a baby mammoth’s body was found in Olchan mine in the Oimyakon Region of Yakutia. Specialists of the Museum of Mammoth of the Institute of Applied Ecology of the North, Academy of Sciences of Sakha Republic (Yakutia), have been thoroughly studying the finding and they have published the first outcomes.

Unlocking The Psychology Of Snake And Spider Phobias:

University of Queensland researchers have unlocked new evidence that could help them get to the bottom of our most common phobias and their causes.

I’ll try to say something WiSE tomorrow

WiSE, a network of Women in Science and Engineering at Duke University is hosting a panel Shaping the world, one job at a time: An altruistic/alternative career panel tomorrow, Friday, at noon in Teer 203. If you want to show up, please RSVP online as soon as possible so they know how many boxed lunches to get.
It will be an informal panel: each one of us will get 3-5 minutes to introduce ourselves, followed by a discussion and Q&A. We are also likely to hang around for a few more minutes afterwards. The panelists? Under the fold….

Continue reading

Today’s carnivals

I And The Bird #71 is up on The House & other Arctic Musings
Change of Shift, Vol. 2, Number 19 is up on Emergiblog

Germs

ClockQuotes

Time, when it is left to itself and no definite demands are made on it, cannot be trusted to move at any recognized pace. Usually, it loiters; but just when one has come to count on its slowness, it may suddenly break into a wild, irrational gallop.
– Edith Wharton, 1862 – 1937

Around the intertubes….

Pre-accountability
Getting Jaked
Space Kimchi (but can they fix sarma on the Space Station?)
Flare Research – Well damn…
When Life Needs Porpoise
Live from Seattle: Fatal intracerebral mass bleeding edition
So my lovely oldest is 16 and a half…
A Few Important Posts (about animal rights)
Ocelot – Salvador Dali’s pet
Three levels of spiders
A sustainable culture begins with a healthy, sustainable attitude
Sharks and Condit
More Komodo Dragon Babies!
3/19/2003 – 3/19/2008
Weaver, Roseman and Stringer back at it with Neandertals, Natural Selection and a time of divergence
Cultural sustainability
Photographic rights and Exeter streets
Bacterial capitalism
Ten Valuable Resources
Time to move the scientific process on the web

A nice brief tutorial on sleep

On Brain Rules