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My picks from ScienceDaily
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Posted in Science News
Clock Quotes
I guess you will have to go to jail. If that is the result of not understanding the Income Tax Law I shall meet you there. We shall have a merry, merry time, for all of our friends will be there. It will be an intellectual center, for no one understands the Income Tax Law except persons who have not sufficient intelligence to understand the questions that arise under it.
– Senator Elihu Root
Posted in Clock Quotes
7 Living Artifacts And Why They Are Done For
This is a little tongue-in-cheek, on purpose, but it is also thought-provoking.
Perhaps we are not there yet, but in 5 years it will be completely correct. Power outages are keeping some of the older, analog technologies surviving on the back burner (FM radio, landline phone).
This will also happen in waves – technology pioneers first, middle-class folks in industrialized countries next, the youngsters, of course, and then the rest.
The developing world is a special case – in some cases they HAVE to use outdated tech due to unreliable source of electrical power, lack of infrastructure, etc., while in others they can skip decades of technological development and adopt the most current one (skipping landlines altogether and adopting cell phones instead is already happening in Africa).
Posted in Technology
Praxis
Praxis #5 is up on Effortless Incitement
Genes and Human History: What do your genes say about where you came from?
This, The Good, The Bad and The Ugly: Exploring the ecology of insects, The Descent of the Dinosaurs, Where the Woolly Rhinos Roam: A natural history of Ice Age animals and more at Pulse Project.
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Posted in Science Education
Today’s carnivals
Molecular and Cell Biology Carnival #4 is up on The Daily Transcript
Gene Genie #41: Carnivalome – is up on ScienceRoll
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Posted in Carnivals
Clocks and Immunity
This EurekAlert title got my attention this morning: Immunity stronger at night than during day:
The immune system’s battle against invading bacteria reaches its peak activity at night and is lowest during the day.
Experiments with the laboratory model organism, Drosophila melanogaster, reveal that the specific immune response known as phagocytosis oscillates with the body’s circadian rhythm, according to Stanford researchers who presented their findings at the American Society for Cell Biology (ASCB) 48th Annual Meeting, Dec. 13-17, 2008 in San Francisco.
“These results suggest that immunity is stronger at night, consistent with the hypothesis that circadian proteins upregulate restorative functions such as specific immune responses during sleep, when animals are not engaged in metabolically costly activities,” explains Mimi Shirasu-Hiza of Stanford University.
In previously published research, when Shirasu-Hiza and her colleagues had infected normal flies with measured doses of two noted human pathogens, Streptococcus pneumoniae or Listeria monocytogenes, the sickened flies’ circadian rhythms were disturbed. They stumbled around more randomly, and stood still for relatively shorter periods. Moreover, genetic mutants lacking circadian cycles of rest and activity died more quickly on infection with these pathogens than normal flies did.
In the new round of experiments, the researchers observed that, consistent with those earlier findings, the activity of phagocytes in normal fruit flies oscillates with their circadian rhythms. Flies infected with S. pneumonia or L. monocytogenes during resting periods (“nighttime”) also survive significantly longer than those infected during active periods (“daytime”). Further, by injecting fluorescently labeled dead bacteria into flies at different points in their circadian cycle, the investigators could see increased phagocyte function at night for those two pathogens: there was an increase in the number of bacteria ingested by phagocytes in flies infected during resting versus active phases. Likewise, circadian-mutant flies “trapped” in the active phase had decreased phagocyte function, demonstrating that phagocyte activity is subject to regulation by circadian proteins whose activity, in turn, is disrupted by these mutations.
Strangely, though, infecting the flies with a third bacterial pathogen, Burkholderia cepacia, produced the opposite result. Circadian-mutant flies coped better with the infection than did normal flies, suggesting that in this case, a disrupted circadian rhythm might actually be good for the flies.
Nice, but why go back to the Drosophila model, when this has been studied for decades in vertebrates?
Just look at the Google Scholar searh for “circadian+immunity” – about 23,400 hits! Here is a nice review. And here and here are papers I am very familiar with (along several others on the related topics from the same lab). In that last one: “The responses were inverse to one another during the daily light-dark cycle with the cellular response being maximal during the daily light period and the humoral response being maximal during the daily dark period.” which may also explain the Drosophila data in some equivalent way.
If one wants to do research relevant to human medicine which does not rely on the ability to genetically manipulate the lab animals, then using vertebrates makes more sense. On the other hand it is nice to know that this also works in Drosophila, as much of vertebrate literature focuses, perhaps without warrant, on the role of melatonin. If immunity cycles in fruitflies and disruption of the clock disrupts immunity, then a purely circadian mechanism, independent of melatonin, may also be at play in vertebrates. Just some food for thought….
Posted in Chronobiology, Clock News
Getting in the mood for holidays
Perhaps we should buy this: No Limit Texas Dreidel – Jewish Gift Pack Family Entertainment:
Let My People Go All In!! Take Dreidel, combine it with poker, and you’ve got a new dreidel experience that is truly fun, and a game that is the talk of the Jewish community. You’ll check, bet, raise, or fold depending on the strength of your dreidel hand (or how much you like to bluff). Standard edition game is for 2-4 players (not suitable for children 3 and under/choking hazard). Each set includes 4 shakers, a “spinner” button, 4 small dreidels and 3 large dreidels, and comes in a heavy quality drawstring pouch. Complete instructions are also included, prior knowledge of poker is NOT essential (but it helps!). Chips are not included – we recommend using kosher chocolate gelt coins, jelly beans or other fun candies (sold separately).
Then play it while listening to Erran Baron Cohen’s version of ‘Dreidel’:
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Posted in Fun
My picks from ScienceDaily
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Posted in Science News
Clock Quotes
Beauty depends on size as well as symmetry. No very small animal can be beautiful, for looking at it takes so small a portion of time that the impression of it will be confused. Nor can any very large one, for a whole view of it cannot be had at once, and so there will be no unity and completeness.
– Aristotle
Posted in Clock Quotes
8th Annual Year in Ideas in NYTimes
New York Times has compiled a whole slew of essays about the interesting ideas that people have come up with during 2008. And three of them are written by Rebecca Skloot, who is the special speaker at the WiSE event (on Friday night) at ScienceOnline09.
Her three essays are:
Avian Dancing:
If you aren’t one of the millions who have already done so, go immediately to YouTube and search for “Snowball the Dancing Cockatoo.” There you will see a large white bird balanced on the back of an office chair, bobbing his head, stomping his feet and doing something that — until now — scientists believed impossible: dancing just like a human. This is good fun. It’s also good science: Snowball’s videos are changing the way researchers understand the neurology of music and dancing….
About three years ago, the mayor of Petah Tikva, a city near Tel Aviv, called the veterinarian Tika Bar-On and said, “I can fix almost everything in this city, but I don’t know how to fight dog poop.” He asked Bar-On, the city’s director of veterinary services, if it was possible to use DNA fingerprinting to identify which dogs pooped on his city streets and — most important — which owners didn’t pick up after them. As a result, this year, Bar-On introduced the first-ever forensic dog-poop DNA unit….
Jan Vinzenz Krause, a 31-year-old German entrepreneur, says that condoms should be more like shoes. “You go into a shop, tell them your size and you get shoes that fit your feet,” he says. “Not so with condoms.” Aside from the occasional extra-large brand, condoms essentially come in one size: about 6.5 inches long. Penises, however, come in many sizes. This leaves many men squeezed into condoms so tight they cut off circulation (and impede erections) or so large they’re floppy and nonfunctional. To fix this, Krause has invented the world’s first condom that can be custom made for each man: the spray-on condom….
Read them in their entirety and check out the other essays as well…
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Posted in Science Reporting
I want this ;-)
While these gifts for geeks don’t really excite me, I wouldn’t mind putting my giant hamsters into one of these (more cool images, including of stuff one may want to own – here):

Posted in Fun
Squid Suckers from the Little Shop of Horrors

This is one of ten Best Science Images of 2008 as chosen by National Geographic:
Little Shop of Horrors fans may see a resemblance to the bloodthirsty plant from the 1986 movie in the above electron micrograph image.
Drexel University doctoral student Jessica Schiffman won an honorable mention in photography in the 2008 International Science and Engineering Visualization Challenge for capturing what’s actually an array of suckers found on the tentacles of a long-finned squid.
Each sucker–about 400 micrometers wide, or a little smaller than the width of a human hair–is surrounded with “fangs” of chitin, a hard organic material.
Squid use their powerful suckers to secure unwitting prey and feed their robust appetites–much like the horror-movie plant that inspired the image’s color scheme.
Posted in A Picture Is Worth A Thousand Words
Clay Shirky on Love, Internet Style, as a renewable material
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Posted in Technology
Advice on designing scientific posters
This one is good and thorough – by Colin Purrington, Department of Biology, Swarthmore College. Short excerpt from the beginning:
Why a poster is usually better than a talk
Although you could communicate all of the above via a 15-minute talk at the same meeting, presenting a poster allows you to more personally interact with the people who are interested in your research, and can reach people who might not be in your specific field of research. Posters are more efficient than a talk because they can be viewed even while you are off napping, and especially desirable if you are terrible at giving talks. And once you have produced a poster, you can easily take it to other conferences. If you don’t like to travel far, or are broke, many college and university science departments sponsor poster sessions that welcome students from nearby institutions. For all of the above, session organizers typically have a “Best Poster Prize Committee,” which awards fame and often cold hard cash to deserving posters. And when you’re ready to retire your poster from active duty, you can hang it in your dorm room to impress your friends, or display it in your departmental hallway so that faculty can show off your hard work to visitors for years to come. You can also submit your final product to ePosters.net, which promises to keep a PDF version of your poster in perpetuity (for free) and allows people to send you comments about your poster.
Posted in Academia, Science Education, Science Practice
Don’t forget to submit your posts for these carnivals!
Have you written something about the world of/in science since November 15th? Next edition of Praxis will be on Effortless Incitement on December 15th.
Have you written a History of Science post lately? Next edition of The Giant’s Shoulders will be on Rigorous Trivialities also on December 15th.
Posted in Carnivals
Elephants in the movies (videos)
And now that everyone is on an elephant-blogging spree, here are clips from two of my favourite childhood movies, both featuring elephants – Elephant Walk and Hatari:
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Posted in Fun
Elephants in zoos
A recent survey of Asian elephants in European zoos showed that their lifespan is much, much shorter than for elephants in the wild. Ed and Brian go into details of this survey.
The survey does not look at African elephants, nor at North American zoos – in both cases I feel that the picture looks much better, if nothing else because North American zoos tend to be newer, not located in the middle of a big city, and thus more spacious.
In the comments on Ed’s post, I said: “Many elephants in zoos are kept in enclosures that are too small for them. This is why more and more zoos are shutting down their elephant exhibits and sending their elephants to a couple of zoos (mostly in the southern USA, like the one in Asheboro NC where the bloggers met a couple of months ago) which have large expanses of land for elephants and are specifically geared for keeping these animals in captivity, breeding them and taking care of them properly. This recent trend may be the cause of the recent slight improvement in the lifespan numbers you mention – the numbers are averages of many zoos. I am assuming that as more and more zoos abandon keeping elephants, and send them to those few zoos that can keep them, the statistics will improve more. Will they ever match the lifespans in the wild is an open question at this time.”
Keep in mind that here I was talking about African elephants in the North American zoos, the population that was not the target of the published study. We don’t know what the numbers are for these elephants (or do we? – anyone knows?).
Related recent elephant news.
Posted in Environment
Zoo animals need to slim down
So, the zoo nutritionists got together for a 2-day meeting at NCSU to discuss the issue:
Obesity among zoo animals is such a complex problem that zoo nutritionists, scientists and others, from as far away as England, gathered at N.C. State University on Friday for a two-day symposium on such weighty matters as how to tell when an oyster’s weight is about right.
“It’s actually a huge problem, and a multifaceted one,” said Michael Stoskopf, a professor at the college. “You have to look at not only diets themselves and the amount of calories delivered, but also things like exercise.”
The basic cause of chubbiness is no different for moray eels and wildebeests than for humans: “If the energy going in exceeds the energy going out, you’re going to get fat,” said Karen Lisi, a nutritionist at the Smithsonian National Zoological Park. “We don’t like to hear that, but that’s pretty much how it is for us, too.”
With so much variation among creatures, though, nutritionists have to treat the diet of each species almost like an individual scientific study, determining what it eats in the wild and how best to approximate it in captivity, said Richard Bergl, curator of conservation and research at the N.C. Zoological Park in Asheboro.
“It’s not just a matter of throwing a bucket of apples in with the monkeys and a bale of hay to the elephant,” Bergl said.
When your zoo has hundreds of creatures as different as tree frogs, fish, birds and elephants, the task can be overwhelming.
Even among birds, the variation in diet is huge, what with hummingbirds that sip nectar, fruit-eating parrots and vultures that chow down on rotted meat. The diet for individual animals may have to be adjusted to compensate for changes such as pregnancy, lactation or simply aging, Lisi said.
Her zoo, with about 400 species and 2,000 individual animals, has its own nutrition lab.
Even simply determining whether an animal is overweight is so complex that part of the symposium was dedicated solely to that topic. Sometimes it’s obvious when an animal is morbidly obese, Lisi said. Other times, though, a quirk of a given species, such as thick fur, makes it more difficult, and zoo staff might not be able to tell without tranquilizing it and checking by hand.
Read the entire article (which, btw, is the front-page, big-headline piece in today’s News & Observer – kudos to the newspaper for putting science up front).
Posted in Physiology
Some thoughts about Science2.0
This is pretty long and not easy to read, but it puts together a lot of thoughts about blogs, wikis and the stability of the Web as a science publishing platform. Post your comments there, or here.
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Posted in Open Science
Open Science – post-mortem analysis of H.M.’s brain
As you know, H.M. died last week.
Listen to this brief (9 minutes) NPR Science Friday podcast – you will be able to hear Henry Gustav Molaison’s voice. But most importantly, he has donated his brain to further scientific study. His brain will be sliced and stained and studied at The Brain Observatory at the University of California, San Diego.
But the way they are going to do it will be in a very Open Science manner. Dr. Jacopo Annese, who is leading the project said, in this interview, that the entire process will be open – there will be a forum or a blog where researchers from around the word can make suggestions and discuss the procedure and the results. This will include, especially, people who have worked with Molaison when he was alive and may, thus, have the most insight into what would be most important to study, e.g., exactly what dyes to use to trace which brain circuits, etc. It will be interesting to watch.
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Posted in History of Science, Neuroscience, Open Science
My picks from ScienceDaily
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Posted in Science News
Clock Quotes
The trouble with our times is that the future is not what it used to be.
– Paul Ambroise Valery
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Posted in Clock Quotes
Silly Science
Why is mainstream media obsessively focused, out of all the cool science out there, on silly titillating EvoPsych garbage, presented in a “shocked! shoked!” tone? Here is today’s crop – feel free to savage them on your own blogs:
46% Of Women Prefer Internet To Sex, Says Intel Survey
Fertile women more open to corny chat-up lines
20% of teens say they’ve put nude pics of themselves online
Science Dweebs Often Virgins
Orgasms During Childbirth?
Are daughters-in-law to blame for the menopause?
Posted in Science Reporting
Where are the acorns?
CNN reports: Scientists baffled by mysterious acorn shortage:
Up and down the East Coast, residents and naturalists alike have been scratching their heads this autumn over a simple question: Where are all the acorns? Oak trees have shed their leaves, but the usual carpet of acorns is not crunching underfoot. In far-flung pockets of northern Virginia, Maryland, Pennsylvania, West Virginia and other states, scientists have found no acorns whatsoever.
But closer reading reveals that it is lay people and amateur naturalists who are baffled, while scientists are not. Scientists are well aware that the oaks produce corn in cycles – bumper years followed by lean years. The cycles are quite regular, and can be used to predict outbreaks of Lyme Disease:
One of the notions put forward in the article was that abundance of acorns in one year leads to abundance of rodents (mostly white-footed mice and chipmunks) the next year, and abundance of ticks – thus Lyme Disease – the third year. Now, Ostfeld and collaborators have added several more years of data and performed a detailed analysis of a large (13 years) dataset that strongly suggests that their initial hunch was correct.
Posted in Ecology, Science Reporting
30 Ways to Shock Yourself
Old-timey-looking pictures are here.
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Posted in Fun
The Oceans’ Shifting Balance
In yesterday’s New York Times:
Scientists have understood ocean acidification for a long time. But what they are learning now is how quickly it is increasing, in step with increases in atmospheric carbon dioxide. New studies show that if carbon dioxide emissions continue at current rates, shells and corals could begin to dissolve — especially in the southern oceans — within 30 years. Observations from many places, including the Caribbean Sea and the Pacific Ocean, suggest that ocean acidification is proceeding much faster than anyone had thought.
Posted in Environment
The structure of scientific collaboration networks
On arXiv, by M. E. J. Newman (Santa Fe Institute):
We investigate the structure of scientific collaboration networks. We consider two scientists to be connected if they have authored a paper together, and construct explicit networks of such connections using data drawn from a number of databases, including MEDLINE (biomedical research), the Los Alamos e-Print Archive (physics), and NCSTRL (computer science). We show that these collaboration networks form “small worlds” in which randomly chosen pairs of scientists are typically separated by only a short path of intermediate acquaintances. We further give results for mean and distribution of numbers of collaborators of authors, demonstrate the presence of clustering in the networks, and highlight a number of apparent differences in the patterns of collaboration between the fields studied.
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Posted in Academia, Open Science, Science Practice, Technology
The Internet is for Porn
Hmmm, I am wondering if this is connected – adult sites are feeling the crunch so….are they now funding scientific consumer research?
New and Exciting in PLoS ONE
There are 11 new articles in PLoS ONE today. As always, you should rate the articles, post notes and comments and send trackbacks when you blog about the papers. You can now also easily place articles on various social services (CiteULike, Connotea, Stumbleupon, Facebook and Digg) with just one click. Here are my own picks for the week – you go and look for your own favourites:
Coupled Contagion Dynamics of Fear and Disease: Mathematical and Computational Explorations:
In classical mathematical epidemiology, individuals do not adapt their contact behavior during epidemics. They do not endogenously engage, for example, in social distancing based on fear. Yet, adaptive behavior is well-documented in true epidemics. We explore the effect of including such behavior in models of epidemic dynamics. Using both nonlinear dynamical systems and agent-based computation, we model two interacting contagion processes: one of disease and one of fear of the disease. Individuals can “contract” fear through contact with individuals who are infected with the disease (the sick), infected with fear only (the scared), and infected with both fear and disease (the sick and scared). Scared individuals-whether sick or not-may remove themselves from circulation with some probability, which affects the contact dynamic, and thus the disease epidemic proper. If we allow individuals to recover from fear and return to circulation, the coupled dynamics become quite rich, and can include multiple waves of infection. We also study flight as a behavioral response. In a spatially extended setting, even relatively small levels of fear-inspired flight can have a dramatic impact on spatio-temporal epidemic dynamics. Self-isolation and spatial flight are only two of many possible actions that fear-infected individuals may take. Our main point is that behavioral adaptation of some sort must be considered.
Spike generation in cortical neurons depends on the interplay between diverse intrinsic conductances. The phase response curve (PRC) is a measure of the spike time shift caused by perturbations of the membrane potential as a function of the phase of the spike cycle of a neuron. Near the rheobase, purely positive (type I) phase-response curves are associated with an onset of repetitive firing through a saddle-node bifurcation, whereas biphasic (type II) phase-response curves point towards a transition based on a Hopf-Andronov bifurcation. In recordings from layer 2/3 pyramidal neurons in cortical slices, cholinergic action, consistent with down-regulation of slow voltage-dependent potassium currents such as the M-current, switched the PRC from type II to type I. This is the first report showing that cholinergic neuromodulation may cause a qualitative switch in the PRCs type implying a change in the fundamental dynamical mechanism of spike generation.
No, this is not a classical circadian PRC, but the principle is the same.
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Posted in Science News
More on Pulitzers for online reporting
Remember this?
Now Simon Ovens interviewed several key players in this game – Pulitzers Open to Online-Only Entrants — But Who Qualifies? It’s longish, but worth your attention:
He did, however, confirm that a blog could hypothetically qualify. “If one or two people call their website a text-based newspaper, would it be eligible?” he said. “Blogs tend to fall into three categories. There are news reporting blogs, there are commentary blogs, and there’s a hybrid version of the two. If they’re text-based and meet our criteria, then they probably could compete. But it would be up to them to satisfy the criteria.”
Everything you always wanted to know about the Evolution of the Eye
Evolution: Education and Outreach, Volume 1, Number 4, is a thematic issue – 26 articles on the Evolution of the Eye. It’s Open Access so you can download and read all the articles.
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Posted in Evolution
Future of the University
Food for thought:
Bill Farren: Insulat-Ed:
Opening up the institution may seem like a counter-intuitive way of protecting it, but in an era where tremendous value is being created by informal and self-organized groups, sharing becomes the simplest and most powerful way of connecting with external learning opportunities. Why limit students to one teacher when a large number of them exist outside the institution? Why limit students to a truncated classroom conversation when a much larger one is taking place all over the world? Why not give students real-world opportunities to learn how to manage and benefit from networked sources? Institutions that are opening up are betting that the benefits obtained by sharing their resources will outweigh the expenses incurred in their creation. These institutions understand that larger and richer sources of knowledge and wisdom are to be found outside their walls. They understand that allowing students to access these sources, sharing their own, and helping students learn how to manage and understand all of it, will add value to what it is that they do as institutions. They appreciate that the costs of trying to match the quality and quantity of resources/expertise found on the network would be prohibitive. The most practial solution is to become a participatory member of the network. In the end, providing access to these resources and teaching students how to benefit from them not only serves the students, but also keeps the institution from becoming irrelevant, although admittedly, institutional influence will most likely be diminished as more learners self-organize.
Robert Paterson: The Rise of the Old Academy from the ashes of the University?:
So what about the “credential”? Will a student miss out by being taught by me or someone like me?
First of all, in the post industrial world. I suspect that having a meaningless credential that really says that all you did was attended a school, may not have much value. But I think that if you showed that you learned math from an acknowledged great math teacher, this would mean something. If you learned how to write code from a player in the field – that would mean more than a computer science degree. If John Robb taught you about global security that would mean something. If Stuart Baker taught you abut how values really work in society, that would mean something. You would also be part of the network of real teachers and there would not be that gulf between university and life You would show that because you had been accepted by a leader in your filed as a pupil that you were indeed special..
Will Richardson: So What is the Future of Schools?:
I think I’m finally getting to the root of my continued frustration with my kids’ education which is the system’s inability to help them find and nurture the areas they truly have passion for. It would be nice if the institution were the place that connected my kids to the experts they desired and needed to support their learning, wouldn’t it?
———snip——–
Nothing in these conversations changed my view that to really change what we do in schools we have to first change our understanding of what it means to teach in this moment. That doesn’t mean than we throw out all of the good pedagogy that we’ve developed over the years and make everything about technology. But it does mean, I think, that technology has to be a part of the way we do our learning business these days.
Big News from Lawrence Lessig
“In the summer, I will begin an appointment at the Harvard Law School, while directing the Safra Center.”
More details here.
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Posted in Media, Politics, Technology
Scientific Method?
Correct. The hypothetico-deductive method is just one aspect of the Scientific Method. When are they going to finally update the textbooks?
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Posted in Science Education
The party of Herbert Hoover? Haha, that ship has sailed a long time ago!
Melissa puts the whole auto-makers non-bailout non-deal most succinctly and correctly of them all:
In short, the GOP demanded that the bailout be contingent upon busting unions, and, when their demand wasn’t met, they tanked the deal.
With each such stunt, over the years, Republicans lost another segment of the voting population and this one is no different – all the people employed by or dependent on the car industry will remember this for a generation.
The craziest thing that Shakes notes, though, is this silly quote by Dick Cheney:
“If we don’t do this, we will be known as the party of Herbert Hoover forever.”
Ha! He wants to improve the party branding? For it to be remembered just as the party of Herbert Hoover and not as the much more atrocious party of Bush and Cheney? Fr rlz?
Posted in Politics
Three reasons to distrust microarray results
From Reproducible Ideas:
Even when lab work and statistical analysis carried out perfectly, microarray experiment conclusions have a high probability of being incorrect for probabilistic reasons. Of course lab work and statistical analysis are not carried out perfectly. I went to a talk earlier this week that demonstrated reproducibility problems coming both from the wet lab and from the statistical analysis.
Continue the discussion here….
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Posted in Science Practice
Dr. Exotica
Q: What’s the most important diagnostic tool you use?
A: The Internet. We rely on it heavily, probably more than other specialists do. Online, we access recent medical journals from all over the world, including PLoS Neglected Tropical Diseases and the Journal of Infectious Diseases in Developing Countries. They have really good articles written by people on the local level. But beyond that, we use the Internet to keep up on what’s happening in various cultures. I read international newspapers and the Websites of the U.S. State Department and refugee organizations.
Posted in Medicine, Open Science
Scitable
Nature Education, a new division of Nature Publishing Group, has launched Scitable, a free online educational resource for undergraduate biology instructors and students.
Scitable, which currently covers the field of genetics, is built on a library of overviews of key science concepts compiled by Nature Publishing Group’s editorial staff. Scitable’s evidence-based approach explains science through the lens of the scientific method, with links to milestone research papers.
Topics of investigation include:
• Chromosomes and cytogenetics
• Evolutionary genetics
• Gene expression and regulation
• Gene inheritance and transmission
• Genes and disease
• Genetics and society
• Genomics
• Nucleic acid structure and function
• Population and quantitative genetics
Scitable is designed to help teachers engage students in a deeper appreciation of science by combining the site’s content libraries with the kinds of social learning tools that students enjoy.
Visit Scitable to register, browse the content libraries, and create a classroom research space for your students.
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Posted in Science Education
More (and better?) science on TV?
Prime time makes a scientific discovery
“My husband, who’s a physicist at CalTech, says, ‘Physics is the new black,’ ” says Jennifer Ouellette, who regularly blogs about the subject on cocktailpartyphysics.com. The author of such science-friendly books as “The Physics of the Buffyverse,” in which she deconstructed the science of ” Buffy the Vampire Slayer,” Ouellette is also the new director of the Science and Entertainment Exchange, a new program developed by the National Academy of Science to help Hollywood understand scientists and visa versa.
—————
“Most people in the entertainment industry don’t know a scientist,” she says. “Or even someone who knows a scientist. I know lots of scientists.”
And she’s happy to share. Last month, Seth MacFarlane hosted the group’s first symposium, inviting writers, producers and other industry types to listen to and chat with experts in fields including astophysics, genetics, robotics, neuroscience and marine biology, and it couldn’t have come at a better time.
Read the whole article….
[Hat-tip]
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Posted in Science Reporting
New journal: Ideas in Ecology and Evolution
Ideas in Ecology and Evolution is a new Open Access journals which is also experimenting with the review process.
Bob O’Hara and commenters go into details. I hope it does not end like Medical Hypotheses: a great source of blog-fodder for snarky bloggers and not much else. We’ll keep an eye….
Posted in Ecology, Evolution, Open Science
Hotspots, a new PBS movie
Starting this month, a new PBS documentary-three years in the making-will change the way Americans see life on Earth. Scientists the world over now agree that Earth is experiencing runaway mass extinction of life across virtually all ecosystems.
The bottom line? Life on Earth is dying off, fast. The good news? People everywhere are waking up and doing something about it.
Far from being just another nature film with awe-inspiring aerials (although it sports some), HOTSPOTS takes American television audiences to the front lines of some of the most far-flung places on Earth. Viewers are given a first-hand look at a global movement of local initiatives to stop Earth’s 6th mass extinction dead in its tracks and bring our biosphere back from the brink an ecological bankruptcy that would know no bailout.
Dr. Tobias, the film’s producer and director, nails it when he says that “mass extinction is the mother of all issues” and that “there is a direct connection between our dual economic and ecological crises.” Far from pessimistic, HOTSPOTS profiles pioneers of a new kind, unsung heroes around the world who are working to save Earth’s last life banks from complete collapse.
Dr. Russell Mittermeier, president of Conservation International and the film’s host, is available by phone, often from the frontlines of a biodiversity hotspot. Dr. Michael Tobias, president of Dancing Star Foundation, a global ecologist with over 100 films and 35 books to his credit, is available in Los Angeles. Both are ready to share the latest news on biodiversity loss and protection, and each has an epic eye-witness perspective to share on mass extinction-why we need to act now and the unprecedented opportunity that this challenge gives us to get it right for generations to come.
HOTSPOTS will air on PBS affiliates throughout December and run well into 2009. A companion DVD is also available from the PBS online store and DancingStarFoundation.org. Thank you for considering coverage or passing this along to someone who might. I’ve included our new release below for your reference.
In the mean time, I invite you to watch the trailer.
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Posted in Environment, Media
Today’s carnivals
I and the Bird #90: Christmas Count Tally Rally – is up on Jeffrey A. Gordon
December Change of Shift is up on Marijke: nurse turned writer
Friday Ark #221 is up on Modulator
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Posted in Carnivals
Scienceblogs.com on NYTimes
If you go to the Science page of New York Times, starting today, you will see on the right side, just below the “Most popular” box a brand new widget – “Selected Posts From Sb Scienceblogs” that looks like this:
Soon, we’ll reciprocate the link by linking to NYTimes science content as well. A nice way for old media and new media to integrate with each other, send readers to each other and educate the general audience about the difference in format, form, style, voice and quality between the old and new media. Everybody wins.
Evening Serenity
I grew up in the big city. I like visiting big cities. The moment you drop me in NYCity, San Francisco, or London, I get into my “city mode” – the quicker pace of walking, a different demeanor. It’s fun – for a few days. I don’t want to move into and live in a big city again. I am much happier getting out on my front porch and taking a picture of a deer in the front yard:

Posted in A Picture Is Worth A Thousand Words, Personal





