Yearly Archives: 2007

My Picks from ScienceDaily

Huge New Dinosaur Had A Serious Bite:

The newest dinosaur species to emerge from Grand Staircase-Escalante National Monument had some serious bite, according to researchers from the Utah Museum of Natural History at the University of Utah.

New Species Of Frog Discovered: Smallest Indian Land Vertebrate:

The India’s smallest land vertebrate, a 10-millimeter frog, has been discovered from the Western Ghats of Kerala by Delhi University Systematics Biologist, S D Biju and his colleagues.

No Faking It, Crocodile Tears Are Real:

When someone feigns sadness they “cry crocodile tears,” a phrase that comes from an old myth that the animals cry while eating. Now, a University of Florida researcher has concluded that crocodiles really do bawl while banqueting – but for physiological reasons rather than rascally reptilian remorse.

Sea Otter, Peregrine Falcon Back From The Brink Of Extinction But Other Species At Risk In Canada:

There’s good news and bad news in the report the Committee on the Status of Endangered Wildlife in Canada (COSEWIC) just dropped on the Minister of the Environment’s desk.

New Suspect Identified In West Nile Deaths Of Pelicans:

Stable flies are the latest suspect that may be involved in the West Nile virus deaths of hundreds of pelican chicks at the Medicine Lake National Wildlife Refuge in northeast Montana. West Nile virus killed 800 to 1,000 pelican chicks in 2003, averaged 400 in each of the next three summers and more than 600 this year.

Individual Differences Caused By Shuffled Chunks Of DNA In The Human Genome:

A study by Yale researchers offers a new view of what causes the greatest genetic variability among individuals — suggesting that it is due less to single point mutations than to the presence of structural changes that cause extended segments of the human genome to be missing, rearranged, or present in extra copies.

Today’s Carnivals

Circus of the Spineless #25 is up on The annotated budak
The latest issue of the Carnival of Education is up on Evolution… not just a theory anymore

World Health Organization breaks embargo and messes up.

Before two papers passed the peer-review and got published, WHO (which was given the data) made its own interpretation of the findings and included it in its press kit, including the errors they made in that interpretation. A complex story – what’s your take on it?

How to blog a conference

I regularly check Anton Zuiker’s Sugarcubes, displayed in his sidebar. There, I recently discovered that Ethan Zuckerman and Bruno Giussani put together a booklet that explains how to liveblog a conference – Tips for conference bloggers (choose between a large PDF and a small PDF). Pretty good information overall.
When I went to the first BloggerCon in Chapel Hill, I was still a newbie: I sat next to and chatted with Dave Winer without knowing who he was. I do not remember now, but I believe I wrote a brief post about the BloggerCon afterwards.
The following year, at Podcastercon, I sat back and enjoyed myself, and only felt compelled to, afterwards at home, write a post that was mostly about Dave Warlick’s amazing session on podcasting in the classroom. That was the first time many of us have seen The Wizard in action (he usually travels around the country doing this), but that experience was instrumental in our seeking out early and getting Dave to lead a session on the use of the Web and the concept of the Flat Classroom in science education for the Science Blogging Conference.
At last year’s ConvergeSouth, which was only one day long, I wrote only a one-post summary, but the year before, I wrote a whole lot of posts, session-by-session (the last post in the series has links to all the others on the bottom). But that was not liveblogging – I wrote all those posts over about ten days after I got home from the conference. From memory! I did not even take any notes!
Blogging from Scifoo was closer to real-time than is my usual practice (well, that was the first time I actually had a laptop, and I had it with me!), but even that was not real liveblogging. In the sessions, I want to pay attention and to interact with others. If I am crafting a sentence to write about what I just heard, I will miss the next ten sentences and loose the thread. I’d rather digest the entire session in my mind and write about it afterwards.
As an organizer, I do not have time to liveblog the Science Blogging Conference as I have to be at so many different places at the same time, making sure everything is going smoothly. But last year, a number of people did a great job liveblogging and post-blogging the conference. So I hope that there will be good blogging from the next one as well. Perhaps the Zuckerman-Giussani handbook will be helpful for the livebloggers here in January.

My Picks from ScienceDaily

How ‘Mother Of Thousands’ Makes Baby Plants:

New research shows how the houseplant “mother of thousands” (Kalanchoe diagremontiana) makes the tiny plantlets that drop from the edges of its leaves. Having lost the ability to make viable seeds, the plant has shifted some of the processes that make seeds to the leaves, said Neelima Sinha, professor of plant biology at UC Davis.

Red Wine Ingredient — Resveratrol — Fights Diabetes In Mice:

Even relatively low doses of resveratrol–a chemical found in the skins of red grapes and in red wine–can improve the sensitivity of mice to the hormone insulin, according to a new report. As insulin resistance is often characterized as the most critical factor contributing to the development of type 2 diabetes, the findings “provide a potential new therapeutic approach for preventing or treating” both conditions, the researchers said.

In Dogs, A Shortcut To Mapping Disease Genes:

Nearly two years ago, Broad Institute researchers and their colleagues announced they had successfully decoded the genome of the domestic dog, a species coaxed into hundreds of distinct types through selective breeding by humans over the past two centuries.

Dogs That Bite Children Have Often Not Bitten Kids Before:

Dogs that bite children have often not bitten kids before, but they tend to have underlying behavioural or medical problems, indicates research in the journal Injury Prevention.

Biologists Close In On Mystery Of Sea Turtles’ ‘Lost Years’:

Biologists have found a major clue in a 50-year-old mystery about what happens to green sea turtles after they crawl out of their sandy nests and vanish into the surf, only to reappear several years later relatively close to shore.

Of Mice And Men: New Male Contraceptives Successful In Rodents And Humans:

Pills, sponges, IUDs, diaphragms — women have many options for planning their fertility, none of them quite perfect. But what if men want to help out? They have only two options — vasectomy, which is usually permanent, and condoms, which are crucial for dating but get old in long-term relationships. Will men ever have a way to reliably make sure that nobody is every calling them “Daddy” before they are ready?

ClockQuotes

I find that we all get more legendary as time goes by. Legend means, basically, bullshit.
– Joel Rosenberg

There is no Soul. Deal with it.

Galilei kicked us out of the Center of the Universe.
Darwin kicked us off the Pinnacle of Creation
Freud kicked the Soul out of our Brains.
Few remain adherents of Geocentrism.
The opponents of evolution are legion and very vocal (in this country, and a couple of Middle Eastern ones), but they have been defeated so soundly so many times, they had to concede more and more ground, and though they are getting sneakier with time, their efforts are becoming more and more laughable and pitiful.
So, the last Big Fight will be about the Soul. The next area of science to experience a big frontal attack will be Neuroscience.
There is no Soul. Your mind is the subjective experience of what the molecules in your brain cells are doing. Period. But for many, that is the last straw. And the attack will, unlike Creationism, be coming from all sides of the political spectrum, as there are as many adherents of Spirituality crap on the Left as there are believers in the Soul on the Right. They just cannot bear the idea that there isn’t “something more to it” than “just materialism”!
Witness the new book “Spritiual Brain” which is so bad that it cannot even be fisked argument by argument as no arguments are actually presented (at least Creationists have their usual list of idiotic statements that can be effectively demonstrated to be wrong). Shelley Batts and PZ Myers tried hard, but there is just no ‘there’ there.
And even serious neurofolks, like Alvaro and colleagues who are organizing a meeting in Aspen on some of the coolest aspects of neuroplasticity – a hot area of neuroscience that studies how events in the internal and external environment modify the functioning of the brain, which affects the subjective experience, something that is potentially useful in treating people with mental or emotional problems, get slammed for being too materialistic.
If it is non-materialistic, then, by definition, it does not exist. Not just that it is not amenable to scientific study. It.Does.Not.Exist.

He survived, so he is not eligible for a Darwin Award

But he definitely deserves an Honorable Mention (hat-tip: Tanja):

New and Exciting in PLoS ONE

There are 37 new articles on PLoS ONE today, breaking the 1000 barrier! Yes, there are now more than a thousand papers on ONE. And this week is again an embarassment of riches – so many bloggable papers! And here are some of my quick picks for this week – read them, rate them, annotate them, blog about them:
Composition and Hierarchical Organisation of a Spider Silk:

Albeit silks are fairly well understood on a molecular level, their hierarchical organisation and the full complexity of constituents in the spun fibre remain poorly defined. Here we link morphological defined structural elements in dragline silk of Nephila clavipes to their biochemical composition and physicochemical properties. Five layers of different make-ups could be distinguished. Of these only the two core layers contained the known silk proteins, but all can vitally contribute to the mechanical performance or properties of the silk fibre. Understanding the composite nature of silk and its supra-molecular organisation will open avenues in the production of high performance fibres based on artificially spun silk material.

Sexual Risk Factors for HIV Infection in Early and Advanced HIV Epidemics in Sub-Saharan Africa: Systematic Overview of 68 Epidemiological Studies:

It is commonly assumed that sexual risk factors for heterosexual HIV transmission in sub-Saharan Africa, such as multi-partner sex, paid sex and co-infections, become less important as HIV epidemics mature and prevalence increases.
We conducted a systematic review of 68 African epidemiological studies from 1986 to 2006 involving 17,000 HIV positive adults and 73,000 controls. We used random-effects methods and stratified results by gender, time, background HIV prevalence rates and other variables. The number of sex partners, history of paid sex, and infection with herpes simplex virus (HSV-2) or other sexually-transmitted infections (STIs) each showed significant associations with HIV infection. Among the general population, the odds ratio (OR) of HIV infection for women reporting 3+ sex partners versus 0-2 was 3.64 (95%CI [2.87-4.62]), with similar risks for men. About 9% of infected women reported ever having been paid for sex, versus 4% of control women (OR = 2.29, [1.45-3.62]). About 31% of infected men reported ever paying for sex versus 18% of uninfected men (OR = 1.75, [1.30-2.36]). HSV-2 infection carried the largest risk of HIV infection: OR = 4.62, [2.85-7.47] in women, and OR = 6.97, [4.68-10.38] in men. These risks changed little over time and stratification by lower and higher HIV background prevalence showed that risk ratios for most variables were larger in high prevalence settings. Among uninfected controls, the male-female differences in the number of sex partners and in paid sex were more extreme in the higher HIV prevalence settings than in the lower prevalence settings.
Multi-partner sex, paid sex, STIs and HSV-2 infection are as important to HIV transmission in advanced as in early HIV epidemics. Even in high prevalence settings, prevention among people with high rates of partner change, such as female sex workers and their male clients, is likely to reduce transmission overall.

Inflated Impact Factors? The True Impact of Evolutionary Papers in Non-Evolutionary Journals:

Amongst the numerous problems associated with the use of impact factors as a measure of quality are the systematic differences in impact factors that exist among scientific fields. While in theory this can be circumvented by limiting comparisons to journals within the same field, for a diverse and multidisciplinary field like evolutionary biology, in which the majority of papers are published in journals that publish both evolutionary and non-evolutionary papers, this is impossible. However, a journal’s overall impact factor may well be a poor predictor for the impact of its evolutionary papers. The extremely high impact factors of some multidisciplinary journals, for example, are by many believed to be driven mostly by publications from other fields. Despite plenty of speculation, however, we know as yet very little about the true impact of evolutionary papers in journals not specifically classified as evolutionary. Here I present, for a wide range of journals, an analysis of the number of evolutionary papers they publish and their average impact. I show that there are large differences in impact among evolutionary and non-evolutionary papers within journals; while the impact of evolutionary papers published in multidisciplinary journals is substantially overestimated by their overall impact factor, the impact of evolutionary papers in many of the more specialized, non-evolutionary journals is significantly underestimated. This suggests that, for evolutionary biologists, publishing in high-impact multidisciplinary journals should not receive as much weight as it does now, while evolutionary papers in more narrowly defined journals are currently undervalued. Importantly, however, their ranking remains largely unaffected. While journal impact factors may thus indeed provide a meaningful qualitative measure of impact, a fair quantitative comparison requires a more sophisticated journal classification system, together with multiple field-specific impact statistics per journal.

Ant Species Differences Determined by Epistasis between Brood and Worker Genomes:

Epistasis arising from physiological interactions between gene products often contributes to species differences, particularly those involved in reproductive isolation. In social organisms, phenotypes are influenced by the genotypes of multiple interacting individuals. In theory, social interactions can give rise to an additional type of epistasis between the genomes of social partners that can contribute to species differences. Using a full-factorial cross-fostering design with three species of closely related Temnothorax ants, I found that adult worker size was determined by an interaction between the genotypes of developing brood and care-giving workers, i.e. intergenomic epistasis. Such intergenomic social epistasis provides a strong signature of coevolution between social partners. These results demonstrate that just as physiologically interacting genes coevolve, diverge, and contribute to species differences, so do socially interacting genes. Coevolution and conflict between social partners, especially relatives such as parents and offspring, has long been recognized as having widespread evolutionary effects. This coevolutionary process may often result in coevolved socially-interacting gene complexes that contribute to species differences.

Phylogeny, Diet, and Cranial Integration in Australodelphian Marsupials:

Studies of morphological integration provide valuable information on the correlated evolution of traits and its relationship to long-term patterns of morphological evolution. Thus far, studies of morphological integration in mammals have focused on placentals and have demonstrated that similarity in integration is broadly correlated with phylogenetic distance and dietary similarity. Detailed studies have also demonstrated a significant correlation between developmental relationships among structures and adult morphological integration. However, these studies have not yet been applied to marsupial taxa, which differ greatly from placentals in reproductive strategy and cranial development and could provide the diversity necessary to assess the relationships among phylogeny, ecology, development, and cranial integration. This study presents analyses of morphological integration in 20 species of australodelphian marsupials, and shows that phylogeny is significantly correlated with similarity of morphological integration in most clades. Size-related correlations have a significant affect on results, particularly in Peramelia, which shows a striking decrease in similarity of integration among species when size is removed. Diet is not significantly correlated with similarity of integration in any marsupial clade. These results show that marsupials differ markedly from placental mammals in the relationships of cranial integration, phylogeny, and diet, which may be related to the accelerated development of the masticatory apparatus in marsupials.

Effects of Insemination Quantity on Honey Bee Queen Physiology:

Mating has profound effects on the physiology and behavior of female insects, and in honey bee (Apis mellifera) queens, these changes are permanent. Queens mate with multiple males during a brief period in their early adult lives, and shortly thereafter they initiate egg-laying. Furthermore, the pheromone profiles of mated queens differ from those of virgins, and these pheromones regulate many different aspects of worker behavior and colony organization. While it is clear that mating causes dramatic changes in queens, it is unclear if mating number has more subtle effects on queen physiology or queen-worker interactions; indeed, the effect of multiple matings on female insect physiology has not been broadly addressed. Because it is not possible to control the natural mating behavior of queens, we used instrumental insemination and compared queens inseminated with semen from either a single drone (single-drone inseminated, or SDI) or 10 drones (multi-drone inseminated, or MDI). We used observation hives to monitor attraction of workers to SDI or MDI queens in colonies, and cage studies to monitor the attraction of workers to virgin, SDI, and MDI queen mandibular gland extracts (the main source of queen pheromone). The chemical profiles of the mandibular glands of virgin, SDI, and MDI queens were characterized using GC-MS. Finally, we measured brain expression levels in SDI and MDI queens of a gene associated with phototaxis in worker honey bees (Amfor). Here, we demonstrate for the first time that insemination quantity significantly affects mandibular gland chemical profiles, queen-worker interactions, and brain gene expression. Further research will be necessary to elucidate the mechanistic bases for these effects: insemination volume, sperm and seminal protein quantity, and genetic diversity of the sperm may all be important factors contributing to this profound change in honey bee queen physiology, queen behavior, and social interactions in the colony.

The Genetic Signature of Sex-Biased Migration in Patrilocal Chimpanzees and Humans:

A large body of theoretical work suggests that analyses of variation at the maternally inherited mitochondrial (mt)DNA and the paternally inherited non-recombining portion of the Y chromosome (NRY) are a potentially powerful way to reveal the differing migratory histories of men and women across human societies. However, the few empirical studies comparing mtDNA and NRY variation and known patterns of sex-biased migration have produced conflicting results. Here we review some methodological reasons for these inconsistencies, and take them into account to provide an unbiased characterization of mtDNA and NRY variation in chimpanzees, one of the few mammalian taxa where males routinely remain in and females typically disperse from their natal groups. We show that patterns of mtDNA and NRY variation are more strongly contrasting in patrilocal chimpanzees compared with patrilocal human societies. The chimpanzee data we present here thus provide a valuable comparative benchmark of the patterns of mtDNA and NRY variation to be expected in a society with extremely female-biased dispersal.

Non-Invasive In Vivo Imaging of Calcium Signaling in Mice:

Rapid and transient elevations of Ca2+ within cellular microdomains play a critical role in the regulation of many signal transduction pathways. Described here is a genetic approach for non-invasive detection of localized Ca2+ concentration ([Ca2+]) rises in live animals using bioluminescence imaging (BLI). Transgenic mice conditionally expressing the Ca2+-sensitive bioluminescent reporter GFP-aequorin targeted to the mitochondrial matrix were studied in several experimental paradigms. Rapid [Ca2+] rises inside the mitochondrial matrix could be readily detected during single-twitch muscle contractions. Whole body patterns of [Ca2+] were monitored in freely moving mice and during epileptic seizures. Furthermore, variations in mitochondrial [Ca2+] correlated to behavioral components of the sleep/wake cycle were observed during prolonged whole body recordings of newborn mice. This non-invasive imaging technique opens new avenues for the analysis of Ca2+ signaling whenever whole body information in freely moving animals is desired, in particular during behavioral and developmental studies.

Design and Pre-Clinical Evaluation of a Universal HIV-1 Vaccine:

One of the big roadblocks in development of HIV-1/AIDS vaccines is the enormous diversity of HIV-1, which could limit the value of any HIV-1 vaccine candidate currently under test.
To address the HIV-1 variation, we designed a novel T cell immunogen, designated HIVCONSV, by assembling the 14 most conserved regions of the HIV-1 proteome into one chimaeric protein. Each segment is a consensus sequence from one of the four major HIV-1 clades A, B, C and D, which alternate to ensure equal clade coverage. The gene coding for the HIVCONSV protein was inserted into the three most studied vaccine vectors, plasmid DNA, human adenovirus serotype 5 and modified vaccine virus Ankara (MVA), and induced HIV-1-specific T cell responses in mice. We also demonstrated that these conserved regions prime CD8+ and CD4+ T cell to highly conserved epitopes in humans and that these epitopes, although usually subdominant, generate memory T cells in patients during natural HIV-1 infection.
Therefore, this vaccine approach provides an attractive and testable alternative for overcoming the HIV-1 variability, while focusing T cell responses on regions of the virus that are less likely to mutate and escape. Furthermore, this approach has merit in the simplicity of design and delivery, requiring only a single immunogen to provide extensive coverage of global HIV-1 population diversity.

Participate in Journal Clubs on PLoS ONE!

Journal Clubs are a popular feature on PLoS ONE papers. There were several of them in the spring. Now, after a brief summer break, the Journal Clubs are going live again and they will happen on a regular basis, perhaps as frequently as one per week.
What does it mean – a Journal Club? In short, a lab group volunteers to discuss one of the more recent (or even upcoming, not yet published) PLoS ONE papers and to post their discussion as a series of comments, annotations and ratings on the paper itself, triggering a discussion within a broader scientific community.
The first group that will start our Fall series is the Bacterial Metagenomics group led by Dr.Jonathan Eisen at UC-Davis. They chose to discuss last week’s ONE article Metagenomics of the Deep Mediterranean, a Warm Bathypelagic Habitat. It is a good and interesting paper and they have posted their discussion on it already.
If the name Jonathan Eisen rings a bell, it is probably because you are reading his blog. Perhaps you will recognize that one of his students participating in the Journal Club is also familiar to you through her blog as well.
So, what would l really like you to do is to go and read the paper and what the Eisen group wrote about it, then join in the conversation – add your own commentary, including annotations and ratings to the article. If you decide to blog about it at your own site, try to trigger a trackback.
And if you and your group would like to do a Journal Club in the future, let us know – e-mail me at: Bora@plos.org
[cross-posted]

Today’s Carnivals

Scientiae #12 is up on Wayfarer Scientista
Festival of the Trees #16 is up on Trees if you please
Bio::Blogs #15 is up on Public Rambling
Carnival of the Green # 97 is up on World is Green
Oh, The Grand Rounds you will have! A very creative Dr.Seuss-styled Grand Rounds 4.02 are up on Distractible
The 92nd Edition of the Carnival of Homeschooling is up on Tami’s Blog

Bribes for DonorsChoose?!

So, I see that several of my sciblings are offering special incentives to their readers who donate through DonorsChoose. So, what could I offer? Should I place my beautiful banner on some Cafe Press merchandise? Give me some ideas.

New and Exciting from PLoS Biology

My picks for today:
Segregation of Odor Identity and Intensity during Odor Discrimination in Drosophila Mushroom Body:

Considerable progress has been made in understanding how olfaction works as the receptor proteins, sensory neurons, and brain circuitry responsible have become increasingly well-characterized. However, olfactory processing in higher brain centers, where neuronal activity is assembled into the perception of odor quality, is poorly understood. Here, we have addressed how the mushroom body (MB)–a secondary olfactory center–is involved in olfactory discrimination. We manipulated the MB by ablation, disruption of synaptic transmission, and interruption of key cellular signaling molecules in naïve flies and in flies trained to discriminate odors. We first show that although both odor identity and intensity are encoded in the MB, only the former requires Gαq-dependent signaling and is necessary for naïve flies to spontaneously discriminate different odors. We then show that training flies to alter their olfactory response requires Gαs-mediated signaling in MB for both odor intensity and odor identity. We have thus identified (i) segregation of odor identity and odor intensity at the MB level in naïve flies and (ii) different G-protein-dependent signaling pathways for spontaneous versus experience-dependent olfactory discrimination.

Viral Evolution in the Genomic Age:

Genome sequence data will undoubtedly deliver much to the study of viral pathogens and their diseases. A prominent example of this new genomic perspective is influenza A virus, for which a large-scale genome sequencing project begun in the year 2005 has, to date, generated around 2,500 complete viral genomes [1]. While this alone is newsworthy, the rise of rapid, high-throughput genome “pyrosequencing” promises to take the production of viral genomes to a level once unimaginable [2].

Pedagogical Faultlines

Danica gave a presentation at the Waag Society conference in Amsterdam on new concepts and ideas of learning. She put up a wiki and her slides (worth checking out):

The focus of this event was on the theme of challenges in contemporary pedagogy, including the use of new media tools, but also exploring institutional and cultural issues.

ClockQuotes

The best time to hold your tongue is the time you feel you must say something or bust.
– Josh Billings

Science Blogging article in BlueSci

Back in March or early April, I was interviewed for an article on Science Blogging for BlueSci, the Cambridge University’s popular science magazine, produced by students there. The issue is now out and the article by Mica Tatalovic based on that interview is very good. You should read the entire issue, of course (I liked the review of the current knowledge of kisspeptin, for instance), but if you want to read the Science Blogging article, you will have to scroll down to pages 30 and 31 of the PDF. Enjoy the cartoons drawn for the article as well – we may have to use this one for advertising the Science Blogging Conference, methinks:
I%20Blog%20You.JPG

My Picks from ScienceDaily

Saber-toothed Cat Was More Like A Pussycat Than A Tiger:

In public imagination, the sabre-toothed cat Smilodon ranks alongside Tyrannosaurus rex as the ultimate killing machine. Powerfully built, with upper canines like knives, Smilodon was a fearsome predator of Ice-Age America’s lost giants. For more than 150 years, scientists have debated how this iconic predator used its ferocious fangs to kill its prey. Now a new Australian study, published recently in the US Proceedings of the National Academy of Science, hopes to lay the arguments to rest. And the results will put in dent in Smilodon’s reputation.

Thriving Hybrid Salamanders Contradict Common Wisdom:

A new UC Davis study not only has important findings for the future of California tiger salamanders, but also contradicts prevailing scientific thought about what happens when animal species interbreed.

Three-way Mating Game Of North American Lizard Found In Distant European Relative:

An intricate three-way mating struggle first observed in a species of North American lizard has been discovered in a distant relative, the European common lizard. The two species are separated by 5,000 miles and 175 million years of evolution, yet they share behavioral and reproductive details right down to the gaudy colors of the males, according to new research published in the November issue of American Naturalist.

Saving Microscopic Threatened Species:

The Smithsonian’s National Zoo recently acquired 12,000 new animals–microscopic Elkhorn coral larvae harvested by National Zoo scientists in Puerto Rico–as part of an international collaborative program to raise the threatened species. National Zoo scientists hope to one day return the animals, once they are grown, to their wild ocean habitat.

Saltwater Crocodiles Can Find Their Way Home:

Three crocodiles relocated from their homes in Far North Queensland have been tracked swimming between 10 and 30 kilometres per day according to a collaborative research project by The University of Queensland, Australia Zoo and Queensland Parks and Wildlife Service.
————-
The results highlighted the success of satellite tracking for crocodiles allowing continuous tracking without human interference.
Professor Franklin said “Satellite technology is a great way of tracking these really cryptic animals which are difficult to follow.
“The success of the study was also recognition of the skills and knowledge that Steve Irwin brought to the project.”
He said Steve Irwin was a major driving force behind the study, and his intellectual and logistical support complimented the knowledge, experience and contributions made by the other team members.
“He also gave us the assistance of the croc team from Australia Zoo, who are highly skilled in the capture and care of crocodiles.”
All three monitored crocodiles were moved by helicopter between 52 and 130 kilometres away but still found their way back to their capture sites. One crocodile was flown across Cape York Peninsula from the west to east coast, and then circumnavigated the peninsula to return home.
He said crocodiles probably used many factors such as its position to the sun, magnetic fields, sight, and smell to navigate.

Half A Mil

You did it! Earlier today, somebody on Scienceblogs.com posted the 500,000th comment. It will take a few days for our Seed Overlords to check the counter, contact the winners and make the big announcement. In the meantime, as PZ says, You are encouraged to go on commenting to run the tally up to a million.
And, you can enjoy a randomly rotating selection of cool comments on the Scienceblogs.com front page. I know, I know, nobody ever asked me to fertilize their eggs (not that Mrs.Coturnix would approve), but one of the rotating comments is the historical one here:
Chris%20comment%20screenshot.JPG
PLoS is quite proud of it – you can see this screenshot was already posted in the photo album of the PLoS Facebook group.

Today’s Carnivals

Carnival of the Blue #5 is up on Shifting Baselines.
Boneyard #3 is up on Fish Feet.

Science 2.0 at SILS

Yes, I’ll be there this Friday. Come by and say Hello if you are in the building or close at lunchtime.

Help science teachers in poor schools through DonorsChoose

Perhaps you remember June last year when a bunch of us sciencebloggers held a fund drive for science education through DonorsChoose.
Well, we are doing it again this year, more of us, and for a longer period of time – throughout the month of October. As was the case last year, the central information place is Janet’s blog and she has just posted all the details so go and take a look.
You can check out all the projects picked by my SciBlings here and my own here. You can get to my pledge also by clicking on the thermometer on my sidebar (scroll down a little bit) and watch how the mercury in all of our thermometers rise over time. So far, I have picked only a few projects for poor schools in North Carolina. But, if you are fast and we reach our goal too soon, I will add more projects to the pledge, including those in other states.
<!– –>


Janet explains:

This year, the challenge runs for the entire month of October. A number of ScienceBloggers have already put together challenges. Here’s who’s in so far:
A Blog Around the Clock (challenge here)
Adventures in Ethics and Science (challenge here)
Aetiology (challenge here)
Cognitive Daily (challenge here)
Deep Sea News (challenge here)
Evolgen (challenge here)
Gene Expression (challenge here)
Omni Brain (challenge here)
On Being a Scientist and a Woman (challenge here)
The Questionable Authority (challenge here)
Retrospectacle (challenge here)
The Scientific Activist (challenge here)
Stranger Fruit (challenge here)
Terra Sigillata (challenge here)
Thoughts From Kansas (challenge here)
Thus Spake Zuska (challenge here)
Uncertain Principles (challenge here)
How It Works:
Follow the links above to the DonorsChoose website.
Pick a project from the slate the blogger has selected (or more than one project, if you just can’t choose).
Donate.
(If you’re the loyal reader of multiple participating blogs and you don’t want to play favorites, you can, of course, donate to multiple challenges!)
DonorsChoose will send you a confirmation email. Hold onto it; our benevolent overlords at Seed will be randomly selecting some donors to receive nifty prizes. Details about the prizes and how to get entered will be posted here soon!
Sit back and watch the little donation thermometers inch towards 100 percent, and check the ScienceBlogs leaderboard to see how many students will be impacted by your generosity.

Pledge of Allegiance

If anyone shows this to my son, he’ll lead a revolution. Like those wonderful, patriotic, thinking students at Boulder High School, who penned their own, most excellent version of the Pledge of Allegiance:

I pledge allegiance to the flag and my constitutional rights with which it comes. And to the diversity, in which our nation stands, one nation, part of one planet, with liberty, freedom, choice and justice for all.

Kudos to them! Watch the movie:

My Picks from ScienceDaily

Sea Otter, Peregrine Falcon Back From The Brink Of Extinction But Other Species At Risk In Canada:

There’s good news and bad news in the report the Committee on the Status of Endangered Wildlife in Canada (COSEWIC) just dropped on the Minister of the Environment’s desk.

Chesapeake Bay’s Habitats Threatened By Global Warming:

A new report on the impact of global warming on the Chesapeake Bay calls for a major shift in how land is managed in the bay to protect the nation’s most prized hunting and fishing grounds.

Surprise In The Organic Orchard — A Healthier Worm In The Apple:

Insects can catch more than a cold from certain viruses. Some viruses can be lethal to pest species – turning their insides to soup – without harming beneficial insects or other organisms. Hence they are used as an environmentally friendly means of biological crop protection worldwide. The proverbial worm in the apple, the codling moth caterpillar, has been controlled in European orchards for years with a baculovirus called codling moth granulovirus (CpGV). But in southwest Germany, some organic apple growers noticed that the virus was losing its effectiveness. Pest resistance to chemical insecticides is common in agriculture, but resistance to viruses had never been a problem in the past.

Going Fishing? Catch-and-release In Less Than Four Minutes, Please:

Recreational fishing that involves catch-and-release may seem like just good fun, and that released fish go on to live happily ever after, but a recent study at the University of Illinois shows that improper handling techniques by anglers can increase the likelihood of released fish being caught by predators.

ClockQuotes

In a time of drastic change it is the learners who inherit the future. The learned usually find themselves equipped to live in a world that no longer exists.
– Eric Hoffer

My Picks from ScienceDaily

Does The Victim Affect Snake Venom Composition?:

A snake’s intended prey might affect the type and evolution of toxins in their venom, research published in BMC Evolutionary Biology shows. In snakes, venom composition varies both between species and within a particular species. Land snakes feed on a range of animals and birds, so scientists think that these snakes need a diverse array of toxins in their venom. Sea snakes, on the other hand, tend to have a more restricted diet, feeding only on fish. The toxins in these snakes have now been shown to be less diverse than those in terrestrial snakes.

Tiny Animals Exposed To Outer Space:

“For the first time ever, animals are now being exposed to an unmitigated space environment, with both vacuum conditions and cosmic radiation,” says the ecologist Ingemar Jönsson, a researcher at Kristianstad University in Sweden. One of the aims of sending the tiny tardigrades into space is to find out whether they can cope with the rugged conditions in space, which has previously been predicted but never tested.

Antarctic Plants And Animal Life Survived Ice Ages:

Springtails, mites, worms and plant life could help solve the mystery of Antarctica’s glacial history according to new research published in the journal Science.

Fish Diet Linked To Evolution, Ten Million Year Old Chipped Teeth Show:

Chips from 10 million years ago have revealed new insights into fish diets and their influence on fish evolution, according to new research featured in this week’s issue of the journal Science. The chips were found, along with scratches, on the teeth of fossil stickleback fish and reveal for the first time how changes in the way an animal feeds control its evolution over thousands of years.

Does Your Mood Take A Nosedive Each November?:

If you notice that your mood, energy level and motivation take a nosedive each November only to return to normal in April, you may have Seasonal Affective Disorder (SAD), according to Loyola University Health System doctors.

Hormone-driven Effects On Eating, Stress Mediated By Same Brain Region:

A hormone system linked to reducing food consumption appears to do so by increasing stress-related behaviors, according to a new study. Mediated by a hormone receptor protein known as the corticotropin-releasing factor type 2 (CRF2) receptor, the system has attracted recent interest for its role in regulating food intake, say Vaishali Bakshi and Ned Kalin, professors in the Department of Psychiatry at the University of Wisconsin-Madison School of Medicine and Public Health.

Program Provides Blueprint For Recruiting Minorities To Science And Engineering:

The Model Institutions for Excellence Program (MIE) funded by the National Science Foundation (NSF) and the National Aeronautics and Space Administration (NASA) has developed a body of work over the past 11 years demonstrating successful strategies for recruiting underrepresented minority students to science and engineering fields and supporting their successful completion of science degrees.

Babies Raised In Bilingual Homes Learn New Words Differently Than Infants Learning One Language:

Research on the learning process for acquiring two languages from birth found differences in how bilingual babies learned words compared to monolingual babies. The research suggests that bilingual babies follow a slightly different pattern when using detailed sound information to learn differences between words.

ClockQuotes

It is time I stepped aside for a less experienced and less able man.
– Professor Scott Elledge

Blogrolling for Today

The Stem Cell Geek


truCubed.com


McBlawg


Ruhlman


365 Cheeses


VarmintBites


Blackwood Eats

Help schools through DonorsChoose, courtesy of Six Apart.

Janet and Abel alert me that Six Apart (yup, those folks who made MoveableType on which I am typing right now) are supporting DonorsChoose, by issuing a bloggers challenge: “You can request a gift certificate worth $30 at donorschoose@sixapart.com. Request your code now — they’re available until noon on Monday.” What a great way to support good teachers and their students, especially in poor schools.

LOLTesla

LOLTesla.jpg
From here (hat-tip).

My picks from ScienceDaily

Altruism Evolved From Maternal Behavior, Wasp Genetics Study Suggests:

Researchers at the University of Illinois have used an innovative approach to reveal the molecular basis of altruistic behavior in wasps. The research team focused on the expression of behavior-related genes in Polistes metricus paper wasps, a species for which little genetic data was available when the study was begun. Like honey bee workers, wasp workers give up their reproductive capabilities and focus entirely on nurturing their larval siblings, a practice that seems to defy the Darwinian prediction that a successful organism strives, above all else, to reproduce itself. Such behaviors are indicative of a eusocial society, in which some individuals lose, or sacrifice, their reproductive functions and instead work to benefit the larger group.

City Birds Better Than Rural Species In Coping With Human Disruption:

Birds that hang out in large urban areas seem to have a marked advantage over their rural cousins — they are adaptable enough to survive in a much larger range of conditions.

Crabs Prefer A Take-out Meal:

Shore crabs (Carcinus maenas) catch their food at food-rich spots and subsequently eat it elsewhere. With this take-out strategy the crabs maximise their food uptake and keep competing crabs at a distance, says Dutch researcher Isabel Smallegange.

Is There Any Validity To The So-called 5-second Rule?:

If a piece of toast fell on the floor, would you pick it up and eat it? You probably would if you believe in the 5-second rule, which suggests that your spilled breakfast stays germ-free as long as you snatch it up in five seconds.

ClockQuotes

The most dangerous words in the English language are, “This time it’s different.”
– Sir John Templeton

New on PLoS today!

Lots of new stuff on PLoS today. So, let’s go over it one by one.
First, today is the inaugural day of the Clinical Trials Hub, central place for all the papers reporting on clinical trials and discussions of them, hosted on TOPAZ platform (just like PLoS ONE) so users can comment, rate and annotate all the papers (and links from blog posts will show up as trackbacks). Emma Veitch has all the details.
Second, the Trackbacks are now working for some, but not all blogging platforms, as long as the correct URL of the article is used. Links from Drupal blogs form automatically. For MoveableType (at least more recent versions) and WordPress blogs, it is necessary to input the correct trackback URL into the appropriate field. We are assuming that other high-end platforms (e.g., Text Pattern, Scoop, Expression Engine, Typepad, etc.) will work the same way and I would like to know if that is true or if there are glitches with any of them. The lower-end platforms (e.g., Blogspot, LiveJournal, etc.) apparently are incapable of sending trackbacks at this point in time.
The PLoS Medicine team has taken to blogging like fish to water – already three posts this week:
Setting better standards in reporting – and doing – animal research by Virginia Barbour;
Should patients tell researchers what to do? by Paul Chinnock; and
Nominate classic trials in child health by Gavin Yamey.
Encourage them in this endeavor by posting comments (they will not immediately show up on the site, but don’t despair, they will eventually).
Finally, there are new papers published today in the Community Journals: PLoS Genetics, PLoS Computational Biology and PLoS Pathogens. My picks:
What Are Lightness Illusions and Why Do We See Them?, Developing Computational Biology, The Impact of PLoS Pathogens and Genetics of Aging in Caenorhabditis elegans.
Oh, and someone really, really likes the design of PLoS ONE pages. 😉

Running, breathing and being a horse

Yesterday, Chris Clarke wrote a post that I read three times so far, then finally submitted it myself for Reed’s consideration for the anthology. Most science bloggers are excellent writers, but rare is the gift that Chris displays in many a post, of weaving many threads into a coherent story that is also gripping and exciting – even when he writes about stuff like respiratory physiology, something that usually puts students to sleep in the classroom. But add a dash of evolution, a cool movie, some dinosaurs, and a personal experience and suddenly the story comes alive for the reader.
This was started as a comment on his blog, but it got long so I decided to put it here instead. You need to read his post in order to understand what in Earth I am talking about.
Human, like a horse.
First, I used to run a lot when I was in middle/high school. My favourite distances were 800m and 1500m and I usually held the school record and came in the top 10 in my age group for the city of Belgrade (pop. 2 mil.). Sure, I am lightweight and have ling legs, but I attributed my success to breathing – in exactly the same way Chris describes: 4 steps to inhale, 4 steps to exhale to begin with, then reducing it to 3, 2 or even 1 step for each inhalation and exhalation as I am approaching the finish line (or on an uphill). I was also breathing very loudly – sounding almost like a horse. And I actually imagined being a horse when I ran – a little imagery helps squeeze those last ounces of energy out of painful muscles in the end.
Horse, like a human.
Back in 1989 or so, I rode a champion sprinter racehorse throughout his winter fitness program, which was pretty much miles and miles of trotting around the track as a part of interval training. He was already getting older at the time and skipped two entire racing seasons out in the pasture, so he needed a good fitness program in order to get back on track and face the younger horses. Two decades later, he still holds the national and track records on 1000m and 1300m, going a kilometer well inside a minute. Translation: a damned fast horse! When the spring came and the professional jockeys arrived, it was time for me to give the horse to them to continue with the fast portion of the training. But, the owners wanted to reward my work by letting me, just once, get the feel for the speed. So, I took him out on the track and started in a steady canter around the course. The old campaigner knew just what to do – when we passed the last curve and entered the final stretch he took in one HUGE breath that made his chest almost double in diameter (I almost lost my stirrups at that moment when he suddenly widened) and took off. There was no way I could look forward without goggles – too much wind in my face. That was friggin’ fast! About 60km/h, I reckon, for that short burst of energy. And, during that entire final stretch he did not breath at all – he did it pretty much all on that one large breath plus anaerobic respiration. Chris, in his post, explains why horses do that. Oh, and that summer, the horse devastated his younger buddies by winning the biggest sprint of the year by several lengths, leaving the rest of the field, including that year’s Derby winner, in a cloud of dust. The audience roared as he was always a people’s favourite.
Horse and human, like a centaur.
One of the most important things in riding horses, something I always did and always taught, although it is rarely taught by others or mentioned in books, is the necessity for the rider to breath in sync with the horse’s movement. This is especially important when riding a nervous or spirited young horse who would otherwise explode. When trotting – three steps for inhale, three for exhale. Canter is more complicated. Stopping breathing leads to stiffening of the body which the horse immediately detects and it makes the horse nervous and more liable to stop at a jump or do something dangerous. It is easy to teach the adults to breath. But for the little kids, they forget, or even do not understand exactly what I am asking them to do. So, I made them sing while jumping courses. If you sing you have to breath all the time. You cannot stop breathing. So, Twinkle Twinkle Little Star got many a scared little kid over all the jumps in my classes as breathing relaxed them and gave their ponies confidence to jump.

Today’s Carnivals

The Carnival of Space #22 is up on Wanderingspace
Friday Ark #158 is up on The Modulator

ClockQuotes

Wisdom is the reward you get for a lifetime of listening when you’d have preferred to talk.
– Doug Larson

My picks from ScienceDaily

Cockroaches Are Morons In The Morning, Geniuses In The Evening:

In its ability to learn, the cockroach is a moron in the morning and a genius in the evening. Dramatic daily variations in the cockroach’s learning ability were discovered by a new study performed by Vanderbilt University biologists and published online recently in the Proceedings of the National Academy of Sciences.

DNA Extracted From Woolly Mammoth Hair:

Stephan C. Schuster and Webb Miller of Penn State, working with Thomas Gilbert from Copenhagen and a large international consortium, discovered that hair shafts provide an ideal source of ancient DNA — a better source than bones and muscle for studying the genome sequences of extinct animals. Their research achievement, described in a paper to be published in the journal Science on Sept. 28, includes the sequencing of entire mitochondrial genomes from 10 individual woolly mammoths.

What Protects Us From Sunburn Also Protects Crayfish Against Bacteria:

The production of melanin in our skin helps protect us from the sun’s rays, but it also helps protect invertebrate animals — in their case, by encapsulating attacking fungi and parasites.

Second Extremely Resistant Bacteria Sequenced Is Surprisingly Different From First:

Researchers have completed the whole-genome sequence of Deinococcus geothermalis, which is only the second extremely radiation- and desiccation-resistant bacterium to be sequenced.

How The Zebrafish Gets His Stripe:

Scientists have discovered how the zebrafish (Danio rerio) develops one of its four stripes of pigment cells. Their findings add to the growing list of tasks carried out by an important molecule that is involved in the arrangement of everything from nerve cells to reproductive cells in the developing embryo.

What a Difference a Century Makes

From a reasonable concern for Animal Welfare by Lewis Carroll to the mean and stupid Animal Rightists of today.

How could I resist….

…taking pictures of Marbles and Orange Julius a minute ago – aren’t they sweet?

Continue reading

Oxytocin and Childbirth. Or not.

Blogging on Peer-Reviewed Research

When teaching human or animal physiology, it is very easy to come up with examples of ubiqutous negative feedback loops. On the other hand, there are very few physiological processes that can serve as examples of positive feedback. These include opening of the ion channels during the action potential, the blood clotting cascade, emptying of the urinary bladder, copulation, breastfeeding and childbirth. The last two (and perhaps the last three!) involve the hormone oxytocin. The childbirth, at least in humans, is a canonical example and the standard story goes roughly like this:

When the baby is ready to go out (and there’s no stopping it at this point!), it releases a hormone that triggers the first contraction of the uterus. The contraction of the uterus pushes the baby out a little. That movement of the baby stretches the wall of the uterus. The wall of the uterus contains stretch receptors which send signals to the brain. In response to the signal, the brain (actually the posterior portion of the pituitary gland, which is an outgrowth of the brain) releases hormone oxytocin. Oxytocin gets into the bloodstream and reaches the uterus triggering the next contraction which, in turn, moves the baby which further stretches the wall of the uterus, which results in more release of oxytocin…and so on, until the baby is expelled, when everything returns to normal.

As usual, introductory textbook material lags by a few years (or decades) behind the current state of scientific understanding. And a brand new paper just added a new monkeywrench into the story. Oxytocin in the Circadian Timing of Birth by Jeffrey Roizen, Christina E. Luedke, Erik D. Herzog and Louis J. Muglia was published last Tuesday night and I have been poring over it since then. It is a very short paper, yet there is so much there to think about! Oh, and of course I was going to comment on a paper by Erik Herzog – you knew that was coming! Not just that he is my friend, but he also tends to ask all the questions I consider interesting in my field, including questions I wanted to answer myself while I was still in the lab (so I live vicariously though his papers and blog about every one of them).
Unfortunately, I have not found time yet to write a Clock Tutorial on the fascinating topic of embryonic development of the circadian system in mammals and the transfer of circadian time from mother to fetus – a link to it would have worked wonderfully here – so I’ll have to make shortcuts, but I hope that the gist of the paper will be clear anyway.

Continue reading

A Top-Secret Meeting at the Conspiracy Factory

That is where you will find the 70th Skeptics’ Circle.

My picks from ScienceDaily

Solving A Dragonfly Flight Mystery:

Dragonflies adjust their wing motion while hovering to conserve energy, according to a Cornell University study of the insect’s flight mechanics. The revelation contradicts previous speculation that the change in wing motion served to enhance vertical lift.

Mice Teeth Explain The Troubles With Human Wisdom Teeth:

During evolution, many of a species’ properties are shaped by ecological interactions. This is readily evident in mammalian teeth, whose many features closely reflect what each species eats. However, for a long time scientists have suspected that genetic and developmental interactions may also influence species-specific properties. Now, researchers at the University of Helsinki’s Institute of Biotechnology show how development affects the evolution of teeth, and have devised a simple developmental model to predict aspects of teeth across many species. The results were published in Nature.

Vitamin C Is Essential For Plant Growth:

Scientists from the University of Exeter and Shimane University in Japan have proved for the first time that vitamin C is essential for plant growth. This discovery could have implications for agriculture and for the production of vitamin C dietary supplements.

New Animal And Plant Species Found In Vietnam:

World Wildlife Fund scientists have just announced the discovery of 11 new animal and plant species in a remote area in central Vietnam. They say this underscores the importance of conservation efforts in the ancient tropical forests of the region.

Primate Sperm Competition: Speed Matters:

Researchers at UC San Diego and UC Irvine have found evidence that supports the theory that reproductive competition during the evolution of primate species has occurred at the level of sperm cell motility.

Clever Plants ‘Chat’ Over Their Own Network:

Recent research from Vidi researcher Josef Stuefer at the Radboud University Nijmegen reveals that plants have their own chat systems that they can use to warn each other.

ClockQuotes

No man whose sex life was satisfactory ever became a moral censor.
– Mina Loy

Open Laboratory 2008

Openlab 2007
Now that the registration for the Science Blogging Conference is open, it is time to remind you that the new edition of the Science Blogging Anthology, “Open Laboratory 2007”, is in the works and is accepting your suggestions.
Although the entire process, from the initial idea all the way to having a real book printed and up for sale, took only about a month, the Open Laboratory 2006 was a great success. This year, we have much more time so we hope we will do an even better job of it.
More than 100 entries have come in so far (see under the fold) and we are looking for more. I have read them all and written my annotations about each, while Reed Cartwright is in the process of reading them closely as we speak. In the end, he will be the final aribiter of which 50 posts, plus one poem and one cartoon, will make it into the anthology. Think of me as a ‘series editor’ and Reed as the ‘2007 editor’.
As we are bloggers, we like transparency. As much as the automated submission form makes our lives easy, we decided that it would be best if, like last year, we made the list of entries public. That way, you can all see them, read them, comment about them, and see what is missing and needs to be entered before the deadline comes (December 20th 2007).
Please, use the submission form to enter your submissions (i.e., putting a link in the comments of this post will not do you any good) and pick up the code for the cool badges (like the one on top of this post) here to help us spread the word.
As I wrote earlier:

Clicking on the button will take you to the submission form. Reed and I will get e-mail notification every time there is a new entry and we will read them all and jot down some ‘notes to self’. Since we have ten months to do this, we will not need a jury of 12 bloggers to help us read all the entries, but do not be surprised if we ask you to vet/factcheck/peer-review a post that is in your domain of expertise (and not ours) later in the year.
So, go back to December 20th, 2006 and start looking through your archives as well as archives of your favourite science bloggers and look for real gems – the outstanding posts. Many have been written recently for the “Science Only Week”, or for the “Basic Terms and Concepts” collection.
Try to look for posts that cover as many areas of science blogging as posssible: mathematics, astronomy, cosmology, physics, chemistry, earth science, atmospheric/climate science, marine science, biochemistry, genetics, molecular/cellular/developmental biology, anatomy/physiology, behavior, ecology, paleontology, evolution, psychology, anthropology, archaeology, and/or history of science, philosophy of science, sociology of science, science ethics and rhetorics, science communication and education, the business of science, the Life in Academia (from undergraduate, graduate, postdoc, faculty or administrative perspective), politics of science, science and pseudoscience, science and religion, etc.
Also, try to think of different post formats: essays, personal stories, poems, polemics, fiskings, textbook-style prose, etc. For now, let’s assume that color images cannot make it into the book (I’ll let you know if that changes) and certainly copyrighted (by others) material is a No-No. Posts that are too heavily reliant on multiple links are difficult to turn into hardcopy as well. Otherwise, write and submit stuff and hopefully one of your posts will make it into the Best 50 Science Posts of 2007 and get published!

Under the fold are the entries so far. About half have been submitted by authors, the rest by readers. I hope you don’t need to ask us to remove an entry of yours, but if that is the case (e.g., you intend to include it in your own book), please contact me about it.
Reading all the entries so far will help you think of other posts, yours or others’, that may fit in here. Perhaps a big story of this year is not covered in any of the submissions so far. Perhaps you remember a post which covers a story better than the entry we already have. Have we missed a really popular post that everyone loved and linked to?
Also, if you are an expert in an area and you have BIG problems with one of the entries in your field, please let us know soon so we can send it out for further peer-review. As was the case last year, only English-language posts are eligible. If you have written an awesome post in another language, please make a GOOD translation available before submission.
I will occasionally update this post as new entries keep coming in, so keep coming back every week or so to see what is new. The entries are arranged in alphabetical order of the name of the blog (because all attempts at categorization failed), which makes it easy to get my own out of the way first, and let you go on quickly to see all the really cool writers of the science blogosphere. If a blog has multiple contributors, the author of the submitted post(s) is named in parentheses.

Continue reading

Help make NIH-funded research findings freely available to everyone!

Back in July, the House of Representatives passed a bill that requires all the NIH-funded research to be made freely available to the public within at most 12 months subsequent to publication.
The equivalent bill has passed the Senate Appropriations Committee earlier this summer and will be up for vote in the Senate very soon! In advance of this important vote, The Alliance for Taxpayer Access has issued a Call for action:

As the Senate considers Appropriations measures for the 2008 fiscal year this fall, please take a moment to remind your Senators of your strong support for public access to publicly funded research and – specifically – ensuring the success of the National Institutes of Health (NIH) Public Access Policy by making deposit mandatory for researchers.
Earlier this summer, the House of Representatives passed legislation with language that directs the NIH to make this change (http://www.taxpayeraccess.org/media/release07-0720.html). The Senate Appropriations Committee approved a similar measure (http://www.taxpayeraccess.org/media/release07-0628.html). Now, as the Appropriations process moves forward, it is critically important that our Senators are reminded of the breadth and depth of support for enhanced public access to the results of NIH-funded research. Please take a moment to weigh in with your Senator now.

Read the rest for talking points and the contact information of your Senators, then do your part and contact them! And spread the word – by e-mail, posting on your blog or website, on forums and mailing lists. Let’s get this bill passed this month and thus ensure that taxpayer-funded research is freely available to its funders – the taxpayers.
This needs to be done no later than Friday, September 28, 2007, when the bill is slated to appear in the Senate.

Cool Animal Meme

This was Anton’s idea, at the dinner the other night, but I will get it started here anyway.
An interesting animal I had
I never owned an unusual species of animal. As a little kid I had small turtle named Aeschillus. Later I had two horses, half-brothers, whose names meant the same in two different languages – Meraklija in Serbian and Kefli in Hebrew both mean “one who truly enjoys life and good things in life”. My wife was a better namer of horses – her last one, the one she brought into the marriage, she named Double Helix and his barn nickname was Watson. A cat and a dog also became “mine” through marriage. We had a Love Bird briefly, and some tetras, a couple of great dogs and, of course, the three cats that sometimes grace the pages of this blog: Biscuit, Marbles and Orange Julius. Probably the most interesting animal I had, but could not really claim full ownership of (it was probably owned by someone, but was considered to be communal) was a skewbald Cameroon Pigmy Goat that served as a stall-mate to Meraklija as he was a highly strung Thoroughbred who needed company to calm him down. There were several goats in the barn, each living where needed, no matter who owned the horse in question. One of the goats was not a pigmy, but a normal-sized white goat who had to be milked every dawn and dusk by whoever was feeding the horses that day. So, on Thurdsays – my feeding day – I got to milk the goat and keep the milk for my own consumption if I wanted to.
An interesting animal I ate
Everyone has tried a taste of their lab animal at least once, so yes, I had eaten marinated and fried breasts of Japanese quail once. Delicious! Also, whenever we gelded a colt, I’d take the ‘prize’ home, marinate for a day or two, then everyone from the barn would come over to one of our houses for some great fried horse whitebreads.
An interesting animal in the Museum
George – the ancient python at the Museum of Life Science in Raleigh was everyone’s favourite for many years. Seeing a stuffed dodo is always an emotional moment.
An interesting thing I did with or to an animal
Sure, I did some stuff to my lab animals, e.g, surgeries. That is not such a big deal. More interestingly, I once participated in the Christmas slaughter of three pigs at the farm where I kept my younger horse. It is hard work and makes you really appreciate your food afterwards.
An interesting animal in its natural habitat
Bumping into a snake is always exciting. Deer, possums, raccoons, rabbits, turkey vultures and red-tailed hawks are common around here and not that exciting to see. I once saw an octopus that came too close to the coast, minutes before it was harpooned by the owner of a local seafood restaurant for dinner. Standing in the dark in Florida at the beach and watching a whooperwill on a perch from just a few feet away for almost half an hour was quite a thrill.
OK, let’s get this started. I am tagging:
Anton
Anna
Brian
Anne-Marie
Danica
Chris
Craig
Jeremy
Eric
Update: Responses are coming in fast!
Ted adds another great question: “a favorite literary animal” – mine is Charlotte (no, not Wilbur) from Charlotte’s Web. And most recently Hemi the Mule.
Here are Chris Clarke (and Tigtog who was tagged by Chris) and Brian Switek (aka Laelaps), the fastest out of the gate. Very cool stories – I’ll try to track it into the future, the tagged and the taggees, as much as I can. Oh, I did not know that Kate also rides horses and she also has a question for Spanish-speaking naturalists. And definitely check out the responses by Theriomorph and Julia Heathcote.
Both Eric and his daughter answered in parallel. Oh, I knew Anne-Marie was going to show off some cool animals she encountered in the field!
Jeremy Bruno comes through. And then, there are cool entries by John Dennehy,
Zach Miller and Dita.
Chris Taylor has seen it all. Nanette is not an adventurous eater. Rana insightful as always. Sherwood Harrington is hillarious. Also check responses by Dr. Violet Socks, Timothy Shortell and Flash.
Neil of Microecos divided each question into vertebrate and invertebrate section which is very cool. Also read Helen, Bernice and Foilwoman.
PZ Myers is waxing poetic..and erotic…about fish!
Update 2: Steve put the announcement up on the latest Friday Ark, so now everyone is tagged!
Check out the latest additions:
Will Bairs
Ed Yong
Fresh Brainz
Self-designed Student
Jessica
Jennifer Forman Orth
Dan Rhoads
Mary Ann
Meta and Meta
The Lizard Queen

Blogrolling for Today

Advances in the History of Psychology


SES: Science, Education & Society


Urban Science Adventures!


Feminist undergrad


CarrieBlogKelly

Today’s Carnivals

Four Stone Hearth #24 is up on _Paddy K_
Tangled Bank #89 is up on Aardvarchaeology
The 138th edition of the Carnival of Education is up on Global Citizenship in a Virtual World
Carnival of the Liberals #48 is up on Liberal England
The 91st Carnival of Homeschooling is up on The Voice of Experience

My picks from ScienceDaily

You Can Teach An Old Dog New Tricks — With The Right Diet:

These supplements, acetyl-l-carnitine and alpha lipoic acid, are continuing to be studied in work with humans, and scientists believe they may provide a new approach to the neurodegeneration and cognitive decline common with aging.

Amazon Forest Shows Unexpected Resiliency During Drought:

Drought-stricken regions of the Amazon forest grew particularly vigorously during the 2005 drought, according to new research.

New Species Of Bacteria Feeds On Natural Gas:

A German-American research team of biologists and geochemists has discovered hitherto unknown anaerobic bacteria in marine sediments which need only propane or butane for growth, as recently reported by the scientific journal “Nature.”

Rare Albino Ratfish Has Eerie, Silvery Sheen:

A ghostly, mutant ratfish caught off Whidbey Island in Washington state is the only completely albino fish ever seen by both the curator of the University of Washington’s 7.2 million-specimen fish collection and a fish and wildlife biologist with more than 20 years of sampling fish in Puget Sound.

Could Iron Fertilization Of Oceans Combat Global Warming?:

Several times over the past century, scientists and environmental engineers have proposed spreading slurries of dissolved iron into the oceans in order to “fertilize” the waters and promote vast blooms of marine plants (phytoplankton). Phytoplankton consume carbon dioxide as they grow, and this growth can be stimulated in certain ocean basins by the addition of iron, a necessary micronutrient.

ClockQuotes

Sometimes the road less traveled is less traveled for a reason.
– Jerry Seinfeld

Foodblogging – the Dinner last night

The highlight of this week’s foodblogging event must have been last night’s dinner at Piedmont restaurant in Durham.
Anton has several posts about the events of the past couple of days, including a detailed description (including the menu, and exactly who was there – about 30 people) of the dinner itself. I came a little late (because I always get lost in Durham as the layout of that city always stumps Google Maps), but as soon as I started chatting with the wonderful people there and eating the wonderful food, my mood changed for the better and I really enjoyed the evening (yes, while someone was taking a hub cap off of the wheel of my new car outside).
Michael Ruhlman is a great guy – ha taught me exactly how to serve myself the head cheese, and here is the photographic evidence:
Michael%20Ruhlman%20and%20me.jpg
While Anton’s post lists all the people present, I’ll just mention those I know from before, including Anna Kushnir, my fellow science blogger (and Scifoo camper) who came down from Boston for the occasion, old friends Ruby Sinreich and Brian Russell (happy birthday Brian!) and Rob Zelt. A new friend – Dean McCord!
There are more pictures on Flickr (add your own if you were there and took pictures). But, what do I say about the food? How does one use language to describe taste? I can describe the jovial atmosphere, or hope that someone took pictures of the food as it was presented, but the gustatory experience? That is tough! All I can say is that every bite was a special experience and a special treat to my taste-buds. I ate slowly, paying attention to the taste and texture of the food. Anton has posted the entire menu, and everything was delicious, but the dessert was just amazing – at first sight, it was just a cup filled with crushed ice, mildly colored. But each bite of it took 20 seconds to experience fully, as one taste followed another which followed another, revealing themselves sequentially as the ice melted in the mouth! Totally amazing!
But probably the best part of the evening was seeing Anton fully in his element, savouring every bite, loving every person there, and just being super happy every single moment of the evening! It was worth being there just to see that! Cheers, Anton! And thank you for doing this for all of us!