Author Archives: Bora Zivkovic

On this day in history, part 2 (or is it 3?)

Happy birthday to Melissa McEwen aka Shakespeare’s Sister, a great blogger and friend!

Today’s carnivals

The 60th Skeptic’s Circle is up on Infophilia.
The Carnival of Space #2 is up on Why Homeschool.
Friday Ark #138 is up on The Modulator

On this day in history

Oh, no, you are thinking that I was going to write yet another post about my own birthday. Fear not. This is a different kind of voyage that started on this day. On May 11th, 1820, that curiously important litttle ship, HMS ‘Beagle’, was first launched (via Beagle Project blog)

Back from SF

Sorry for the delay – I was exhausted and slept almost 10 hours straight ina deep coma once I got home….
Thank you all for birthday wishes both here, by e-mail and on Facebook.
I think I lost my fear of flying this week. Perhaps it was some magic in the little yellow pills that my wife gave me to take 30 minutes before take-off- but could the effect really last for 7-8 hours over two flights in each direction? Perhaps it was the nice, clear weather and prefectly executed flights. Perhaps it was my excitement about the trip itself. Perhaps it was cool people I sat with: a Siemens guy (who is telecommuting, i.e., he is the Raleigh office for the company) who was reading the latest Bob Woodward book and we talked about Tesla and Edison, about physicis and about science and math education; or the IBM guy who designs educational and classroom software which I am ineterested in; or the National High School Rodeo Barrel-Racing Champion who was coming back home to Napa from her Texas college with a great rodeo program, just to pick up her family and horses and go competing to Wyoming, Montana and rest of the West for the summer.
The last leg of the journey home was delayed by about an hour so I joined the mile-high club….no, not in that way! I celebrated my birthday up in mid-air and got my birthday coffee from the nice stewardesses exactly at midnight!
I am sorry I did not get to see more of San Francisco, but I saw a little bit, galivanting around town with Janet (and you can see a picture she posted from the evening. We went to a cool asian restaurant where I had a duck curry soup spread over a bed of rice that was delicious. Then we went to a bar wher I had Guinness. And we had great fun talking about science, blogging, open science, children and everything else.
I stayed in The Mosser, a hotel built in 1913 – it was the first thing built in that part of town! Although it was obviosuly renovated and looking perfectly clean and fresh, one could easily shoot a period movie there – everything in it, including the insides of the rooms, looks like something from the early 20th century. Very romantic. And teh bed was so comfortable I slept like a baby!
In the morning I took a walk to to PLoS where I was sure to meet some gentle people there (though I forgot to put a flower in my hair). Frankly, it did not feel like a job interview! I was relaxed and it was just so much fun to talk to all the people who are excited about open science and the role they play in making it happen. They have great ideas (which I am not at liberty to divulge) and they seemed to like my ideas. It is not like interviewing for a company that wants to sell a product, it is interviewing for an organization with a mission to change the world (or at least one aspect of it) and that is exactly my own personal mission as well. No doubts, no second thoughts about this at all…. Of course, I’ll let you know when the final verdict is in.

41

Two years ago today, I posted this. One year ago today, I only linked to it, though I should have reposted it instead to start a tradition. Well, I’ll fix that this year on this day – under the fold:

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ClockQuotes

Our birthdays are feathers in the broad wing of time.
– Jean Paul Richter

ClockQuotes

A single day is enough to make us a little larger or, another time, a little smaller.
– Paul Klee

Off to SF

Leaving RDU at noon, arriving in SF in the afternoon. If Janet remembers to bring her camera to dinner tonight, she’ll post them on her blog so check it out later tonight or tomorrow. If she brings her laptop, I’ll check my e-mail and comments (and of course my Sitemeter!) briefly – if not, I’ll be back online on Friday. I have scheduled just a couple of little things to show up here automatically while I was gone….and you can always read the long post from earlier this morning.
I forgot, while there was still enough time, to pick up Professor Steve Steve, so he is not coming with me. He’s been everywhere, but I doubt he’s seen the offices of PLoS yet, especially not on a Thursday! Hopefully, there will be another opportunity soon.

My Picks From ScienceDaily (Neuro edition)

Lots of interesting Neuro/Behavioral stuff came out lately, some really cool, some questionable…so you let me know what you think:
Brain’s White Matter: More ‘Talkative’ Than Once Thought:

Johns Hopkins scientists have discovered to their surprise that nerves in the mammalian brain’s white matter do more than just ferry information between different brain regions, but in fact process information the way gray matter cells do. The discovery in mouse cells, outlined in the March issue of Nature Neuroscience, shows that brain cells “talk” with each other in more ways than previously thought. “We were surprised to see these nerve axons talking to other cells in the white matter,” says Dwight Bergles, Ph.D., an associate professor of neuroscience at Hopkins.

Traumas Like Sept. 11 Make Brains More Reactive To Fear:

According to a new brain study, even people who seemed resilient but were close to the World Trade Center when the twin towers toppled on Sept. 11, 2001, have brains that are more reactive to emotional stimuli than those who were more than 200 miles away.

Newborn Neurons Like To Hang With The ‘In’ Crowd:

Like any new kid on the block that tries to fit in, newborn brain cells need to find their place within the existing network of neurons. The newcomers jump right into the fray and preferentially reach out to mature brain cells that are already well connected within the established circuitry, report scientists at the Salk Institute for Biological Studies in the online edition of Nature Neuroscience.

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Today’s carnivals

Tangled Bank #79 is up on Epigenetics News
Four Stone Hearth #4 is up on Anthropology 2.0
118th edition of the Carnival of Education is up on NYC Educator
38th Carnival of the Liberals is up on That is so queer….
The latest Carnival of Homeschooling is up on Homeschoolblogger

ClockQuotes

Journalist: a person without any ideas but with an ability to express them; a writer whose skill is improved by a deadline: the more time he has, the worse he writes.
– Karl Kraus

The Work-Place, or, Catching a Catfish Online

I will be offline for a couple of days so I will not be able to post at my usual frantic pace. Instead, I decided to write something that will take you a couple of days to read through: a very long, meandering post, full of personal anecdotes. But there is a common theme throughout and I hope you see where I’m going with it and what conclusions I want you to draw from it.
Pigeons, crows, rats and cockroaches
I was born and grew up in a big, dirty city and I am not going back (my ex-Yugoslav readers have probably already recognized the reference to the good old song Back to the Big, Dirty City by my namesake Bora Djordjevic of the uber-popular Fish Soup band). I spent the first 25 years of my life in Belgrade, population 2 million. No, I did not feel uncomfortable there. I knew every nook and cranny of the city. I walked around town most of the time, even if that meant two hours at a brisk pace in the middle of the night from the northernmost part of Zemun all the way home south of center.
And I still think that it is a great city – a wild mosaic of architecture from Roman and Ottoman times, through the Austro-Hungarian time, the pre-WWII Serbian and early Yugoslav kingdom era and the Tito communist period, to the Milosevic decade and Wes Clark’s enriched uranium. Steeped in history, yet not trying to live in it. Some cities try to keep looking the same the way they did a century or two ago when they were at the hight of their influence. Stratford-upon-Avon keeps trying to look as if Shakespeare is still living there. Not Belgrade. Far too confident in its 11 centuries of history to care about anything but youth and future. It can be dizzying walking around – there may be an old mosque from the times of Turkish occupation embedded into the remains of the Roman fortress, looking down the street of houses built in Austro-Hungarian style in one direction, in soc-realist style in another direction and overlooked by a huge green-glass modern hotel. There is great art and the ugliest kitch standing side-by-side, European hyper-intellectuals walking side-by-side with peasants, bookstores sinking under the weight of philosophy books and Gypsies collecting scrap metal – and all equally poor.
But it hurts one’s throat to arrive in Belgrade (at least it did in 1995, the last time I went to visit, when my father was still alive). Clean air is not the first priority when the retirees are waiting for months to get their pensions. That is why I escaped whenever I could – summers in our small weekend house at the base of the Mt.Avala just about 20 minutes south of Belgrade when I was a little kid, a couple of weeks at the Adriatic coast every summer when I was little before that became too expensive, teenage years spent on the Danube river in Eastern Serbia in the village my father grew up in, and many years, day after day, at the Belgrade racecourse and the surrounding woods.
~.~.~.~.~.~
Back in 1989 or so, the rats at the racecourse got really numerous and big. Ten-pounders, some of them, I bet. They were not afraid to walk around in the middle of the day. They chased, caught, killed and ate our barn cats. Our terriers were afraid to approach the feed-rooms. We forbade the kids from going to get horse feed. Even we adults banged on the doors before going in. But gradually, we moved all the grain into bins and barrells, plugged all holes, reinforced the walls, and kept the floors as clean as possible. There was just not enough food around any more to sustain such a huge population. As it always goes, after a boom, there is a bust. The rat population collapsed and dissappeared as suddenly as it initially appeared.
~.~.~.~.~.~
I grew up in a small appartment on the 7th floor. My school (K-12) was a walking distance from home. I took a bus to school anyway, being an owl and a late riser, but I had plenty of time to walk home after classes and stop by various food establishments, or parks, or the Natural History Museum, or the library, or stealing cherries and appricots from trees along the route…

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Conception Date Affects Baby’s Future Academic Achievement (!?)

It could be the seasonal use of pesticides, as this study suggests, or it could be seasonality in nutrition of mothers and infants, or seasonality of environmental stressors, or seasonality of mothers’ hormone profiles. Most likely all or most of these and other factors play a role, and the relative importance of the factors differs between geographic regions, between socioeconomic strata, and between times in history.
But there is one factor that has been repeatedly demonstrated to play no role at all: the position of planets, moons and stars, as seen from Earth, at the moment of birth of a baby….

Another job ad

If you are idle, retired or rich, if you live in (or are willing to move to) Oakland, California, if you have decent computer skills and if you want to help fight against Creationism, then this job is perfect for you:
From the National Center for Science Education:

Information technology technician needed by the National Center for Science Education, a nonprofit organization that defends the teaching of evolution in the public schools, to maintain and expand NCSE’s web presence, including maintenance of hardware platforms, determining software needs, and overseeing migration of content to a new web site. NCSE is pursuing open source solutions to information technology services.

Mammoths, many mammoths….

An Ancient Bathtub Ring Of Mammoth Fossils:

Pacific Northwest National Laboratory geologists have put out a call for teeth tusks, femurs and any and all other parts of extinct mammoths left by massive Ice Age floods in southeastern Washington.
The fossils, in some cases whole skeletons of Mammathus columbi, the Columbian mammoth, were deposited in the hillsides of what are now the Yakima, Columbia and Walla Walla valleys in southeastern Washington, where the elephantine corpses came to rest as water receded from the temporary but repeatedly formed ancient Lake Lewis. PNNL geologists are plotting the deposits to reconstruct the high-water marks of many of the floods, the last of which occurred as recently as 12,000 to 15,000 years ago.
“Now is the perfect time to collect geologic and paleontologic data,” said George Last, a senior research scientist at the Department of Energy laboratory in Richland, Wash., whose sideline is researching the ice-age floods. “Winter has eroded the slopes, exposing new evidence. We’re interested in researching any known or suspected mammoth find, to collected additional evidence and to improve documentation of those sites.”

Well, Archy is in that neck of the woods and mammoths are his Big Blogging Topic, so I hope he’ll write something about this soon.

Grand Green Garden

Mendel’s Garden #14 is up on Epigenetics News
Grand Rounds, Volume 3, No 33 are up on The Blog That Ate Manhattan
Carnival of the Green #76 is up on Eco-Worrier

NeuroBlogging of the Week

Encephalon #22 is up on John Hawks Anthropology blog

How to teach as much biology in as little time

Yup, I am teaching my accelerated BIO101 class tonight again. It is all about figuring out what is really important, stripping away everything else, trying not to fry the students’ brains, and keeping one’s own sanity in the process. I’ll probably spend about 30 minutes on cell division and DNA replication, about 45 minutes on development, about 30 minutes on genotype and phenotype and about an hour on evolution, taking breaks between each two topics. In the end, if there is time, I may show an old movie. How old? Well, Steve Jones is in it and he looks young and he talks about his – then current – snail research! That old.

Framing Science – a new page

Chris and Matt just announced their tour as well as a scienceblogs.com page dedicated solely to Speaking Science 2.0. You can check out the original blogospheric responses here (there have been only a few comments since I quit updating that post – most of the debate was highjacked by the interesting, but unrelated, discussion of the fight between religion and reason).

A Pacemaker is a Network

Blogging on Peer-Reviewed Research

This is going to be a challenging post to write for several reasons. How do I explain that a paper that does not show too much new stuff is actually a seminal paper? How do I condense a 12-page Cell paper describing a gazillion experiments without spending too much time on details of each experiment (as much as I’d love to do exactly that)? How do I review it calmly and critically without gushing all over it and waxing poetically about its authors? How do I put it in proper theoretical and historical perspective without unnecessarily insulting someone? I’ll give it a try and we’ll see how it turns out (if you follow me under the fold).
Clock Genes – a brief history of discovery
Late 1990s were a period of amazing activity and rate of discovery in chronobiology, specifically in molecular basis of circadian rhythms. Sure, a few mutations resulting in period changes or arrhythmicity were known before, notably period in fruitflies, frequency in the fungus Neurospora crassa, the tau mutation in hamsters and some unidentified mutations in a couple of Protista.
But in 1995, as the molecular techniques came of age, flood-gates opened and new clock genes were discovered almost every week (or so it appeared).

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Blogrolling for Today

Thought Capital

Neurozone

The Situationist

Library of Congress Blog

Madam Fathom

The Dispersal Of Darwin

Plant Physiological Ecology

On The Brain

Cat Cubed

Mike has a great idea

Three out of ten Republican presidential candidates raised hands in the recent debate indicating they do not believe in evolution. Jason has an excellent round-up of responses (Arianna Huffington rocks!) with some good comments by readers as well. How can you help combat scientific ignorance? If your blog is NOT a science blog, try to do what Mike suggests and link to five science-related posts every week.
There is plenty of stuff here at scienceblogs.com, but you can also use this page when you are looking for science posts, especially the science-related carnivals listed at the very bottom of that page. Carnivals act as filters, showcasing the best that science/nature/medical/environmental blogosphere has to offer on any given week.

Gene Genie

Gene Genie, the carnival of human genetics, now has a homepage and the Sixth issue is now up on ScienceRoll

This is someone you WANT to hire!

Tatjana Jovanovic is a fellow escapee from Serbia and a fellow biologist. She got her MS in Biology at the University of Belgrade and has collected enough data before emigrating to be able to immediately get a PhD if someone would sponsor her here. She is currently in Arizona, but she is moving to North Carolina later this year. She will send you her impressive CV on demand – her publications range from immunology to pest control, but most of it is focused on small rodents, their avian predators and the dynamics of predator-prey relationships. She has combined lab and field work, from biochemistry through mathematical modelling to field experiements, in most of her papers and has made discoveries of small mammals not previously known to reside in that part of the world.
Tatjana particularly likes owls (a subject of several of her papers), she has performed the Serbian portion of the research for the Global Owl Project and is active on The Owl Pages.
She is also an artist and has acted as a mentor for several high-school and undergraduate theses in biology (yes, we do simple research and write theses on topics related to our majors in high school in Serbia). Science education is one of her strengths and passions. Environmental protection is another.
If you are in North Carolina and have a place for a hard-working, honest, smart, highly-educated and well-rounded person in your lab, school, organization or company, contact Tanja at: tanjasova AT gmail DOT com

Panta Rei

Panta Rei is back with a new concept. Send your entries and apply to host.

ClockQuotes

“The time has come,” the Walrus said,
“To talk of many things:
Of shoes – and ships – and sealing-wax –
Of cabbages – and kings –
And why the sea is boiling hot –
And whether pigs have wings.”

– Lewis Carroll

Another review of the SBC-NC’07

I know it’s almost halfway between the first and second Science Blogging Conference, but reviews of the first one are still coming out. Check out the latest one, written by Eva Amsen and published by ‘Hypothesis’ yesterday.

Give the spherical cow an orgasm!

Good luck

That’s one mighty fast horse!

Street Sense won the Derby in style. He hung back in 19th place (out of 20 horses) for most of the race. About 3/4 miles before the end, jockey Borel switched to a new gear and stepped on the gas. He passed all but the last two horses by riding on the rail – all the other horses (and it was horses, not jockeys) just moved away from him as he passed them one by one. That was so fast, all the other horses looked like Clydesdales in comparison. Not wanting to gamble any more, Borel decided to pass the last two on the outside and won so easily he started celebrating a hundred yards before the finish line! Awesome race!

Web, politics and everything else….

Writing actual science posts takes a lot of time, research, thinking and energy. I assembled a large pile of papers I want to comment on and I actually started writing posts about a couple of them already, but Real Life interferes…and it is so much easier and quicker to post a short opinion-post or a linkfest.
Also, my mind has lately been mostly focused on Science Blogging, more Science Blogging, Open Science, Open Notebook Science, organizing the next Science Blogging Conference, Framing Science, Teaching Science and similar stuff I’ve been reading about a lot lately due to the excitement about the potential job. I’ll be in San Francisco interviewing on Wednesday and Thursday and I’ll try to write and schedule a couple of straight-up science posts to appear here while I’m gone.
I always blogged in phases, i.e., my interests shift week after week, so I just realized that it’s been a very long time since I last wrote anything about electoral politics or wrote a pitch for John Edwards. Perhaps I’ll do that again next week, but here is something brief about the way current campaigns are using (or not) the power of the Internet wisely. There is a tension in all campaigns between the dinosaur campaign managers who grew up in the age of flyers and thought TV ads were the next best thing and the new generation of Web-savvy folks who actually do grok the power of the Web.
As Andrew Rasiej says in Jose Antonio Vargas’ excellent article in WaPo (via, via):

“But you have to look at where the power lies. How much influence do their online people have? Not much right now. Fact is, most campaigns, on both sides of the political aisle, think that the Internet is just a slice of the pie. They don’t realize it’s actually the pan.”

Or, as Ed Cone summarizes:

Traditional media remain powerful and relevant, and it’s easy for those of us who live online to forget that a lot of Americans aren’t (yet) right there with us. But as the 2008 campaign gets serious, it looks like the net still isn’t getting the respect it deserves from some of the folks in charge.

I’ve argued before (and I am far from being the only one) that the Edwards campaign gets the Internet better than any other campaign, or at least that their star-studded online team pulls more weight inside his campaign than their equivalents working for other candidates of both parties. Recent hiring of Joe Trippi adds to that impression. Here is the most recent example of their embrace of Web 2.0 in a smart combination with the rusty, old media:

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ClockQuotes

If you don’t have the time to read, you don’t have the time or the tools to write.
– Stephen King

OK, I sometimes do watch TV…

..and not just debates and C-span in an election year. I am unlikely to miss the three legs of the Triple Crown in any given year. Tomorrow at 6pm ET is the Kentucky Derby and I’ll be watching!

Blawg, Netroots, Blaudience, Fisking, Instalanche…?!

Which of these new terms you particularly like or dislike? Do the Lulu.com survey:

“BLOG”, “BLOOK”, “BLEADER” AND “BLAUTHOR”
– WHICH IS THE UGLIEST, OR COOLEST, BLOGGING TERM OF THEM ALL?
WIN A FREE ISBN OR PRIZE-WINNING BOOK BY TELLING US WHAT YOU THINK!
This year marks the tenth anniversary of the invention of the word “blog”, the fifth of the word “blook” (books based on blogs or websites), and the second of the Lulu Blooker Prize-the first literary prize for blooks. To mark this historic occasion, we’re asking what YOU think of all the wonderful-or gruesome?-new words spawned by the “blogosphere” (there’s another one) and by the web as a whole.
Do you love ’em or hate ’em? And which ones do you love or hate most?
Let us know by answering six pairs of mulitple-choice questions-and qualify to be one of FIVE LUCKY WINNERS picked at random who’ll be able to choose to receive either:
a. A copy of each of the three winning blooks in the 2007 Lulu Blooker Prize-named 14 May, 2007 (total value to be determined).
Or…
b. A free ISBN for their own Lulu-produced book ($99.95 value).

Hey, it takes less than a minute (unless you think too hard), so go and fill out the survey now.
Hat-tip: Paul

Blogrolling for Today

BloggingPoet.com

Field Notes from an Evolutionary Psychologist

Writing the Biological

Petrona

Blogfish

Elm Rock City

Culture Dish

In-Mind

Nanopolitan

Must-reads for bloggers

Weekend is coming so you’ll have some time (at least at night) which can be spent in much less useful activities than reading these three articles:
12 Important U.S. Laws Every Blogger Needs to Know
A Blogger’s Disclaimer
The Definitive Guide to Semantic Web Markup for Blogs

Going all Web 2.0 on you!

Yes, the Scienceblogs.com is invading the Facebook! You are free to join the ScienceBlogs Fan Club, the Order of the Science Scouts of Exemplary Repute and Above Average Physique and /or The Skeptics’ Guide to the Universe. See ya there…. Next step: MySpace!

SBC-NC’08 – we have the venue!

2008NCSBClogo200.pngMaking the second Science Blogging Conference even bigger and better, we are happy to announce that the January 19th, 2008 meeting will be hosted by Sigma Xi (publishers of American Scientist) in their gorgeous new building in the Research Triangle Park. Their conference facilities can house more people (225 as opposed to 170 we had last time) and provide more space for shmoozing between and after the sessions.
For those who arrive early, there will be Friday afternoon events, sessions and meals on or close to the UNC campus. We have tentatively secured two excellent session leaders so far and are negotiating with several others. Please check the program and help us build it by adding your ideas (edit the bottom portion of the wiki page or post a comment there). And we are still looking for sponsors – are you interested?

Global spreading of science blogging – is too slow?

Arunn and Selva are wondering why more Indian scientists don’t write blogs, while Danica wonders the same about Serbian scientists. I guess every nation will have its own idiosyncratic ways of getting there, but it is also important to note that in the USA where most of the popular science blogs are located and where there are LOTS of scientists, only a tiny percentage writes blogs or considers doing so in the future. Canadians, Western Europeans and Australians are already catching up in proportion to their own scientific populations. The rest of the world will probably catch up in a few years as well. It’s just that the Americans started first. Also, it is a matter of perceptions as English-language blogs will be much more likely to become well-known outside the borders of their countries. Are there many science blogs in Chinese or Japanese languages? Perhaps, but we don’t know.

My Picks From ScienceDaily

Sleep Deprivation Can Threaten Competent Decision-making:

Gambling is a risky activity that can potentially result in the loss of a significant amount of money. A study published in the journal SLEEP finds that sleep deprivation can adversely affect a person’s decision-making at a gambling table by elevating the expectation of gains and making light of one’s losses following risky decisions.

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ClockQuotes

Laugh and the world laughs with you. Snore and you sleep alone.
– Anthony Burgess

Wow! Just wow!

I don’t watch TV almost at all, but I turned it on for a minute earlier today. I thought it was some kind of monthypythonesque satire, or perhaps that the ‘American Funniest Videos’ has really reached the bottom of the barrel since I last saw it several years ago…but then I noticed the title of the show was “The Republican Primary Debate”! Oh, that explains why there was no canned laughter all the time! There should have been.
It is really disheartening to see that these people are taken seriously, not laughed at by the pundits, and that their so-called Party is considered to be legitimate. It is even more disheartenting that these people even manage to get substantially more than zero votes when they run for office. I thought that orange overalls would fit some of them quite nicely…I switched the TV off mighty quick. My emotional and mental health is precious to me.

The Cell on science blogging

There is a new (nice and long) article by Laura Bonetta about science blogging in today’s issue of the journal Cell.
Bloggers on A Blog Around The Clock, Pharyngula, Aetiology, Framing Science, The Daily Transcript, Sandwalk, In the Pipeline, Nobel Intent, Useful Chemistry, De Rerum Natura and Panda’s Thumb are mentioned and/or interviewed. A couple of carnivals, e.g., Tangled Bank, Mendel’s Garden and Gene Genie are also mentioned.
For those who have no access to The Cell, I am assuming that each one of us will egotistically quote the part about oneself (like we did last month with The Scientist article), so here are the parts that are about me and then you can go around the other blogs to see their excerpts – once you put that all together you’ll have the whole article, I bet:

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Carnival of the Liberals update

Next Carnival of the Liberals will not be held here as previously announced. I will host on the 23rd of May instead. Next week the carnival will be hosted by That Is So Queer… instead.

HIV/AIDS blogging of the month

International Carnival of Pozitivities #11 is up on Living In The Bonus Round

Framing Global Warming

NPR has started a year-long series on climate called Climate Connections. The other day, they broadcast the first in a series of their educational segments, starting at the very beginning: the carbon atom. You can read the intro here and watch the video here but just listening to the audio in the car was absolutely fascinating (the video is close, but much shorter and not identical to the first quarter of the audio segment for which the podcast is at the “listen” button).
The science was very basic yet completely correct and the entire segment was so fun to listen to. It was fast and funny, and there were no big words like “covalent bond” or “valence” that would make the piece sound like a lecture. In five minutes or so of listening, my son and I learned (or remembered) everything important about the properties of carbon and how that affects climate change. And it was all through silly metaphors!
Importantly, the entire story was very carefully framed – yes, the F-word! At the end of the segment you are going to think along these lines: carbon atoms have no choice but to behave the way they do; scientists can only discover properties of carbon but they cannot do anything to change the properties and behavior of the carbon atoms; humans are the only players in this story with the power to alter their own behavior and it is up to us as a society, as well as us as a collection of individuals, to make choices about modifying our behaviors in a way that takes into account the unchangeable properties of carbon atoms.
Of course, for those who want to learn more and are not afraid of big words, NPR has also posted this interview online. Framed differently for different audiences, the video (low level), audio (middle) and online text (high) – yet the final result is the same: a better understanding of the science underlying global warming.

Open Notebook Science

I know, I know, many people are still skeptical, but opening one’s lab notebooks is a part and parcel of the new world of Open Science. There is an opinion piece about it in Nature (also available on Nature’s Nautilus blog). Attila Csordas added some very important points today, reminding everyone of the global nature of scientific collaboration.
The few pioneers who have opened their notebooks do it in different ways. Jean-Claude Bradley’s group uses both a blog and a wiki. Rosie Redfield’s group has one central blog plus each student’s own blog (see them here, here, here and here). Bjoern Brembs certainly has a cool blog, though it does not function as a day-to-day lab notebook. His website is full of information, often on things not published yet, e.g., this page showing data before the paper came out. Attila is right that whatever software or method gets universally adopted has to be useful for collaborations between geographically distant labs, not just within labs located in one building.
Maxine states that:

…maximizing their benefits will require a change in culture that many researchers will no doubt initially resist.

. But, as I mentioned before, the areas of science that are really competitive (for patents, money, prizes or fame) are those that are always in the news and the best kinds to use where conflict is needed for the plot: in the movies and in LabLit. Those are the areas that contain the fear of scooping. But those areas are actually relatively small. Most of science is outside the limelight, populated by very gregarious and very generous people following their own curiosities. Most of science outside the “hot” areas (like cancer research) is already collaborative, not competitive, and people in those areas are most likely to be the first to adopt some kind of online Open Notebook style of collaboration.

ClockQuotes

Good communication is as stimulating as black coffee, and just as hard to sleep after.
– Anne Morrow Lindbergh

The Greatest Innovation

Spiked and Pfizer are asking:

‘What’s the Greatest Innovation?’ is a survey of key thinkers in science, technology and medicine, conducted by spiked in collaboration with the research-based pharmaceutical company Pfizer. Contributors were asked to identify what they see as the greatest innovation in their field. More than a hundred experts and authorities have responded already, including half-a-dozen Nobel laureates.
The survey will roll through May and June, and the discussion will go live at an event in central London on Wednesday 6 June

What is the difference between innovation and discovery? This is what the press release says:

spiked’s editor-at-large, Mick Hume, said: ‘Some choose “sexy” looking innovations, others apologise for the apparent dullness of their arcane choices. But whatever the appearances, almost all of our respondents exude a sense of certainty about the improvement that innovations in their field are making to our world, and the potential for more of the same.’
Astronomer Stephen W Squyres said ‘rockets capable of reaching space’ were the obvious choice in his field, while developmental biologist Lewis Wolpert pointed out that without the microscope ‘cells would not have been discovered’. Dr David Roblin, vice president of Pfizer Global R&D, hailed the ‘modern clinical trial’ as the greatest innovation in the field of medicine.
Sir Tim Hunt, Nobel laureate and principal scientist at Cancer Research UK, said recombinant DNA technology has made the biggest difference to the way biologists work today. ‘We couldn’t have gotten anywhere without it.’
Howard Garner, professor of cognition and education at Harvard, believes the ‘cognitive revolution’ was a major innovation: ‘Researchers peered inside the black box and, through theoretical models and experimental interventions, attempted to describe the mental structures and processes that are – or give rise to – thoughts as well as behaviours.’
According to science writer Philip Ball, ‘the essence of the molecular sciences is understanding the shape, structure, constitution, location and dynamics of molecules’. Therefore, he says, analytical tools such as nuclear magnetic resonance (NMR) spectroscopy and optical, electron and scanning-probe microscopies ‘are quite simply what makes the discipline possible as a modern science’.
‘”Random search” has revolutionised the checking of facts, the discovering of new information, the gleaning of leads’, said science writer Matt Ridley, while Paul Parsons, editor of BBC Focus magazine, hailed ‘anything that enables us to rub out our mistakes and correct them; to go back and put things right’.
While it is impossible to choose one single innovation mentioned in the spiked/Pfizer survey as the key moment in human history – whether it’s the discovery of nuclear fusion, the invention of eye glasses with arms or text messaging – the survey itself marks some of the triumphs of human ingenuity.
According to Hume, ‘the results of the survey hint at how much more could be achieved if there was a stronger cultural affirmation of the problem-solving potential of scientific experimentation and bold innovation’.

All good examples, but, none of them would be of much use today (or ever) without the computer and, importantly, without the Internet. And those are important innovations in EVERY field. My field would not even exist without continuous, long-term data-collection by computers. And enormity of data produced by computers could not be disseminated without the Internet – publication of summaries as papers is just not enough any more.

Obligatory Readings of the Day – Copyright

Rob identifies some old pernicious frames, makes suggestions how to counter them and offers more modern ways to frame the question of copyright in this three-part post:
Empty Rhetoric: ‘Intellectual Property Is Property!’
Copyright and scientific papers
Copyright is Censorship

More on duck phalluses and uteri

Of course, I was not the only one commenting on the recent duck phallus paper. You should check out the other blogospheric responses, e.g., by Carl, PZ, RPM, Grrrl, Laelaps, Neil, Belle, Zuzu, Guru and many others.
Unfortunately, most people link only to each other, or to the press release, or to the NYTimes article. The articles are fine, but they are simplified for the mass audience. If you are a scientist, you should read the original paper to get all the details.
Furthermore, many commenters on blogs have asked some very good questions about the research which remained unanswered, e.g., about the teleological language used in the article, the male bias, the individual variation within species, the season-to-season changes in males, and the appropriateness of the use of terms like “rape” in the context of animal behavior.
There is a place for asking (and answering, if you have the expertise) those questions – at the discussion forum of the paper itself where two good questions have already been asked. Just click here.