Author Archives: Bora Zivkovic

Your reviews of The Incredible Hulk and The Happening

I know this call was kinda last minute, but I hope some of you have called in. And if you did, you may have heard yourself on the radio – the audio clips of your reviews are now uploaded here. Even if you didn’t, keep an eye on the site and perhaps one week the question will get you all fired up and you will do it and become instantly famous!

My Picks From ScienceDaily

First Successful Reverse Vasectomy On Endangered Species Performed At The National Zoo:

Veterinarians at the Smithsonian’s National Zoo performed the first successful reverse vasectomy on a Przewalski’s horse (E. ferus przewalskii; E. caballus przewalskii–classification debated), pronounced zshah-VAL-skeez. Przewalksi’s horses are a horse species native to China and Mongolia that was declared extinct in the wild in 1970.

Lizards Pull A Wheelie:

Why bother running on hind legs when the four you’ve been given work perfectly well? This is the question that puzzles Christofer Clemente. For birds and primates, there’s a perfectly good answer: birds have converted their forelimbs into wings, and primates have better things to do with their hands. But why have some lizards gone bipedal? Have they evolved to trot on two feet, or is their upright posture simply a fluke of physics? Curious to find the answer, Clemente and his colleagues Philip Withers, Graham Thompson and David Lloyd decided to test how dragon lizards run on two legs.

Children Learn Smart Behaviors Without Knowing What They Know:

Young children show evidence of smart and flexible behavior early in life – even though they don’t really know what they’re doing, new research suggests.

Being Fat In Today’s World Invites Social Discrimination, Study Suggests:

Obese people feel “a culture of blame” against them, which they say has been made worse by media reports about the health risks of obesity, a new study from Australia found.

From Canada To The Caribbean: Tree Leaves Control Their Own Temperature, Study Reveals:

The temperature inside a healthy, photosynthesizing tree leaf is affected less by outside environmental temperature than originally believed, according to new research from biologists at the University of Pennsylvania.

New Research On Octopuses Sheds Light On Memory:

Research on octopuses has shed new light on how our brains store and recall memory, says Dr. Benny Hochner of the Department of Neurobiology at the Alexander Silberman Institute of Life Sciences at the Hebrew University of Jerusalem. Why octopuses? Octopuses and other related creatures, known as cephalopods, are considered to be the most intelligent invertebrates because they have relatively large brains and they can be trained for various learning and memory tasks, says Dr. Hochner.

Shallow Water Corals Evolved From Deep Sea Ancestors:

New research shows that the second most diverse group of hard corals first evolved in the deep sea, and not in shallow waters. Stylasterids, or lace corals, diversified in deep waters before launching at least three successful invasions of shallow water tropical habitats in the past 40 million years.

Bee Species Outnumber Mammals And Birds Combined:

Scientists have discovered that there are more bee species than previously thought. In the first global accounting of bee species in over a hundred years, John S. Ascher, a research scientist in the Division of Invertebrate Zoology at the American Museum of Natural History, compiled online species pages and distribution maps for more than 19,200 described bee species, showcasing the diversity of these essential pollinators. This new species inventory documents 2,000 more described, valid species than estimated by Charles Michener in the first edition of his definitive The Bees of the World published eight years ago.

Threatened Or Invasive? Species’ Fates Identified:

A new ecological study led by a University of Adelaide researcher should help identify species prone to extinction under environmental change, and species that are likely to become a pest.

Associated Press is even dumber than we initially thought!

Follow up on this story (re-check the links within for background):
Jeff Jarvis: AP, hole, dig
Patrick Nielsen Hayden: The Associated Press wants to charge you $12.50 to quote five words from them
Cory Doctorow: Associated Press expects you to pay to license 5-word quotations (and reserves the right to terminate your license)
Afarensis: AP to Bloggers: You Must Pay or Our Narcs Will Get You!
Patrick Nielsen Hayden: The Associated Press: worse than merely foolish
Oh, oh. Associated Press is sooooooo dead on arrival. Nice to have known you have existed, cavemen!

New and Exciting in PLoS ONE

There are 61 cool new papers in PLoS ONE this week – take a look at these for starters:
Risk and Ethical Concerns of Hunting Male Elephant: Behavioural and Physiological Assays of the Remaining Elephants:

Hunting of male African elephants may pose ethical and risk concerns, particularly given their status as a charismatic species of high touristic value, yet which are capable of both killing people and damaging infrastructure. We quantified the effect of hunts of male elephants on (1) risk of attack or damage (11 hunts), and (2) behavioural (movement dynamics) and physiological (stress hormone metabolite concentrations) responses (4 hunts) in Pilanesberg National Park. For eleven hunts, there were no subsequent attacks on people or infrastructure, and elephants did not break out of the fenced reserve. For three focal hunts, there was an initial flight response by bulls present at the hunting site, but their movements stabilised the day after the hunt event. Animals not present at the hunt (both bulls and herds) did not show movement responses. Physiologically, hunting elephant bulls increased faecal stress hormone levels (corticosterone metabolites) in both those bulls that were present at the hunts (for up to four days post-hunt) and in the broader bull and breeding herd population (for up to one month post-hunt). As all responses were relatively minor, hunting male elephants is ethically acceptable when considering effects on the remaining elephant population; however bulls should be hunted when alone. Hunting is feasible in relatively small enclosed reserves without major risk of attack, damage, or breakout. Physiological stress assays were more effective than behavioural responses in detecting effects of human intervention. Similar studies should evaluate intervention consequences, inform and improve best practice, and should be widely applied by management agencies.

LOL-chimps.jpgFemale Chimpanzees Use Copulation Calls Flexibly to Prevent Social Competition:

The adaptive function of copulation calls in female primates has been debated for years. One influential idea is that copulation calls are a sexually selected trait, which enables females to advertise their receptive state to males. Male-male competition ensues and females benefit by getting better mating partners and higher quality offspring. We analysed the copulation calling behaviour of wild female chimpanzees (Pan troglodytes schweinfurthii) at Budongo Forest, Uganda, but found no support for the male-male competition hypothesis. Hormone analysis showed that the calling behaviour of copulating females was unrelated to their fertile period and likelihood of conception. Instead, females called significantly more while with high-ranking males, but suppressed their calls if high-ranking females were nearby. Copulation calling may therefore be one potential strategy employed by female chimpanzees to advertise receptivity to high-ranked males, confuse paternity and secure future support from these socially important individuals. Competition between females can be dangerously high in wild chimpanzees, and our results indicate that females use their copulation calls strategically to minimise the risks associated with such competition.

The Price of Play: Self-Organized Infant Mortality Cycles in Chimpanzees:

Chimpanzees have been used extensively as a model system for laboratory research on infectious diseases. Ironically, we know next to nothing about disease dynamics in wild chimpanzee populations. Here, we analyze long-term demographic and behavioral data from two habituated chimpanzee communities in Taï National Park, Côte d’Ivoire, where previous work has shown respiratory pathogens to be an important source of infant mortality. In this paper we trace the effect of social connectivity on infant mortality dynamics. We focus on social play which, as the primary context of contact between young chimpanzees, may serve as a key venue for pathogen transmission. Infant abundance and mortality rates at Taï cycled regularly and in a way that was not well explained in terms of environmental forcing. Rather, infant mortality cycles appeared to self-organize in response to the ontogeny of social play. Each cycle started when the death of multiple infants in an outbreak synchronized the reproductive cycles of their mothers. A pulse of births predictably arrived about twelve months later, with social connectivity increasing over the following two years as the large birth cohort approached the peak of social play. The high social connectivity at this play peak then appeared to facilitate further outbreaks. Our results provide the first evidence that social play has a strong role in determining chimpanzee disease transmission risk and the first record of chimpanzee disease cycles similar to those seen in human children. They also lend more support to the view that infectious diseases are a major threat to the survival of remaining chimpanzee populations.

LOL-boobies.jpgPerinatal Androgens and Adult Behavior Vary with Nestling Social System in Siblicidal Boobies:

Exposure to androgens early in development, while activating adaptive aggressive behavior, may also exert long-lasting effects on non-target components of phenotype. Here we compare these organizational effects of perinatal androgens in closely related Nazca (Sula granti) and blue-footed (S. nebouxii) boobies that differ in neonatal social system. The older of two Nazca booby hatchlings unconditionally attacks and ejects the younger from the nest within days of hatching, while blue-footed booby neonates lack lethal aggression. Both Nazca booby chicks facultatively upregulate testosterone (T) during fights, motivating the prediction that baseline androgen levels differ between obligately siblicidal and other species. We show that obligately siblicidal Nazca boobies hatch with higher circulating androgen levels than do facultatively siblicidal blue-footed boobies, providing comparative evidence of the role of androgens in sociality. Although androgens confer a short-term benefit of increased aggression to Nazca booby neonates, exposure to elevated androgen levels during this sensitive period in development can also induce long-term organizational effects on behavior or morphology. Adult Nazca boobies show evidence of organizational effects of early androgen exposure in aberrant adult behavior: they visit unattended non-familial chicks in the colony and direct mixtures of aggression, affiliative, and sexual behavior toward them. In a longitudinal analysis, we found that the most active Non-parental Adult Visitors (NAVs) were those with a history of siblicidal behavior as a neonate, suggesting that the tendency to show social interest in chicks is programmed, in part, by the high perinatal androgens associated with obligate siblicide. Data from closely related blue-footed boobies provide comparative support for this interpretation. Lacking obligate siblicide, they hatch with a corresponding low androgen level, and blue-footed booby adults show a much lower frequency of NAV behavior and a lower probability of behaving aggressively during NAV interactions. This species difference in adult social behavior appears to have roots in both pleiotropic and experiential effects of nestling social system. Our results indicate that Nazca boobies experience life-long consequences of androgenic preparation for an early battle to the death.

Sexually Antagonistic Selection in Human Male Homosexuality:

Several lines of evidence indicate the existence of genetic factors influencing male homosexuality and bisexuality. In spite of its relatively low frequency, the stable permanence in all human populations of this apparently detrimental trait constitutes a puzzling ‘Darwinian paradox’. Furthermore, several studies have pointed out relevant asymmetries in the distribution of both male homosexuality and of female fecundity in the parental lines of homosexual vs. heterosexual males. A number of hypotheses have attempted to give an evolutionary explanation for the long-standing persistence of this trait, and for its asymmetric distribution in family lines; however a satisfactory understanding of the population genetics of male homosexuality is lacking at present. We perform a systematic mathematical analysis of the propagation and equilibrium of the putative genetic factors for male homosexuality in the population, based on the selection equation for one or two diallelic loci and Bayesian statistics for pedigree investigation. We show that only the two-locus genetic model with at least one locus on the X chromosome, and in which gene expression is sexually antagonistic (increasing female fitness but decreasing male fitness), accounts for all known empirical data. Our results help clarify the basic evolutionary dynamics of male homosexuality, establishing this as a clearly ascertained sexually antagonistic human trait.

LOL-coral.jpgCoral Pathogens Identified for White Syndrome (WS) Epizootics in the Indo-Pacific:

White Syndrome (WS), a general term for scleractinian coral diseases with acute signs of advancing tissue lesions often resulting in total colony mortality, has been reported from numerous locations throughout the Indo-Pacific, constituting a growing threat to coral reef ecosystems. Bacterial isolates were obtained from corals displaying disease signs at three WS outbreak sites: Nikko Bay in the Republic of Palau, Nelly Bay in the central Great Barrier Reef (GBR) and Majuro Atoll in the Republic of the Marshall Islands, and used in laboratory-based infection trials to satisfy Henle-Koch’s postulates, Evan’s rules and Hill’s criteria for establishing causality. Infected colonies produced similar signs to those observed in the field following exposure to bacterial concentrations of 1×106 cells ml−1. Phylogenetic 16S rRNA gene analysis demonstrated that all six pathogens identified in this study were members of the γ-Proteobacteria family Vibrionacae, each with greater than 98% sequence identity with the previously characterized coral bleaching pathogen Vibrio coralliilyticus. Screening for proteolytic activity of more than 150 coral derived bacterial isolates by a biochemical assay and specific primers for a Vibrio family zinc-metalloprotease demonstrated a significant association between the presence of isolates capable of proteolytic activity and observed disease signs. This is the first study to provide evidence for the involvement of a unique taxonomic group of bacterial pathogens in the aetiology of Indo-Pacific coral diseases affecting multiple coral species at multiple locations. Results from this study strongly suggest the need for further investigation of bacterial proteolytic enzymes as possible virulence factors involved in Vibrio associated acute coral infections.

From Offshore to Onshore: Multiple Origins of Shallow-Water Corals from Deep-Sea Ancestors:

Shallow-water tropical reefs and the deep sea represent the two most diverse marine environments. Understanding the origin and diversification of this biodiversity is a major quest in ecology and evolution. The most prominent and well-supported explanation, articulated since the first explorations of the deep sea, holds that benthic marine fauna originated in shallow, onshore environments, and diversified into deeper waters. In contrast, evidence that groups of marine organisms originated in the deep sea is limited, and the possibility that deep-water taxa have contributed to the formation of shallow-water communities remains untested with phylogenetic methods. Here we show that stylasterid corals (Cnidaria: Hydrozoa: Stylasteridae)–the second most diverse group of hard corals–originated and diversified extensively in the deep sea, and subsequently invaded shallow waters. Our phylogenetic results show that deep-water stylasterid corals have invaded the shallow-water tropics three times, with one additional invasion of the shallow-water temperate zone. Our results also show that anti-predatory innovations arose in the deep sea, but were not involved in the shallow-water invasions. These findings are the first robust evidence that an important group of tropical shallow-water marine animals evolved from deep-water ancestors.

Body Segment Differences in Surface Area, Skin Temperature and 3D Displacement and the Estimation of Heat Balance during Locomotion in Hominins:

The conventional method of estimating heat balance during locomotion in humans and other hominins treats the body as an undifferentiated mass. This is problematic because the segments of the body differ with respect to several variables that can affect thermoregulation. Here, we report a study that investigated the impact on heat balance during locomotion of inter-segment differences in three of these variables: surface area, skin temperature and rate of movement. The approach adopted in the study was to generate heat balance estimates with the conventional method and then compare them with heat balance estimates generated with a method that takes into account inter-segment differences in surface area, skin temperature and rate of movement. We reasoned that, if the hypothesis that inter-segment differences in surface area, skin temperature and rate of movement affect heat balance during locomotion is correct, the estimates yielded by the two methods should be statistically significantly different. Anthropometric data were collected on seven adult male volunteers. The volunteers then walked on a treadmill at 1.2 m/s while 3D motion capture cameras recorded their movements. Next, the conventional and segmented methods were used to estimate the volunteers’ heat balance while walking in four ambient temperatures. Lastly, the estimates produced with the two methods were compared with the paired t-test. The estimates of heat balance during locomotion yielded by the two methods are significantly different. Those yielded by the segmented method are significantly lower than those produced by the conventional method. Accordingly, the study supports the hypothesis that inter-segment differences in surface area, skin temperature and rate of movement impact heat balance during locomotion. This has important implications not only for current understanding of heat balance during locomotion in hominins but also for how future research on this topic should be approached.

Continue reading

Today’s carnivals

Cabinet of Curiosities #8 is up on Walking the Berkshires
Grand Rounds Vol. 4 No. 39 are up on Marianas Eye Blog
Carnival of the Green #125 is up on The Conservation Report
The Seventy First Philosophers’ Karneval is up on The Ends of Thought
The 129th Carnival of Homeschooling is up on Apollos Academy

Blogrolling for today

My Chemical Journey


Discount thoughts


Optical Futures


Brain Blogger


Chance and Necessity


SciLink Blog

ClockQuotes

The beauty of “spacing” children many years apart lies in the fact that parents have time to learn the mistakes that were made with the older ones – which permits them to make exactly the opposite mistakes with the younger ones.
– Sydney J. Harris

My Picks From ScienceDaily

Humor Shown To Be Fundamental To Our Success As A Species:

First universal theory of humour answers how and why we find things funny. Published June 12, The Pattern Recognition Theory of Humour by Alastair Clarke answers the centuries old question of what is humour. Clarke explains how and why we find things funny and identifies the reason humour is common to all human societies, its fundamental role in the evolution of homo sapiens and its continuing importance in the cognitive development of infants.

Male Bird At Smithsonian’s National Zoo Has Special Reason To Celebrate Father’s Day:

How will the only male rhea at the Smithsonian’s National Zoo spend Father’s Day? He will spend it much like he has spent the past eight weeks: as a proud papa nurturing and caring for his four chicks born April 20. This is the first time in some 30 years that rhea chicks have hatched at the Zoo.

Protecting The Wild Cousin Of Llama, The Guanacos, In Chile:

The Wildlife Conservation Society has launched a study in Chile’s Karukinka reserve on Tierra del Fuego to help protect the guanaco — a wild cousin of the llama that once roamed in vast herds from the Andean Plateau to the steppes of Patagonia.

Complete ‘Family Tree’ Of All British Birds Gives Clues About Which Species Might Be Endangered Next:

A new complete evolutionary ‘family tree’ showing how all British bird species are related to each other may provide clues about which ones are at risk of population decline, according to new research published June 11 in Proceedings of the Royal Society B: Biological Sciences.

Perfect Vision But Blind To Light:

Mammals have two types of light-sensitive detectors in the retina. Known as rod and cone cells, they are both necessary to picture their environment. However, researchers at the Salk Institute for Biological Studies have found that eliminating a third sensor — cells expressing a photopigment called melanopsin that measures the intensity of incoming light –makes the circadian clock blind to light, yet leaves normal vision intact.

Decision-Making, Risk-Taking Similar In Bees And Humans:

Most people think before making decisions. As it turns out, so do bees. In the journal Nature, Israeli researchers show that when making decisions, people and bees alike are more likely to gamble on risky courses of action – rather than taking a safer option – when the differences between the various possible outcomes are easily distinguishable. When the outcomes are difficult to discern, however, both groups are far more likely to select the safer option – even if the actual probabilities of success have not changed.

Coffee’s Aroma Kick-starts Genes In The Brain:

Drink coffee to send a wake-up call to the brain? Or just smell its rich, warm aroma? An international group of scientists is reporting some of the first evidence that simply inhaling coffee aroma alters the activity of genes in the brain.

Age At Puberty Linked To Mother’s Prenatal Diet:

A high-fat diet during pregnancy and nursing may lead to the child having an early onset of puberty and subsequent adulthood obesity, according to a new animal study. The results were presented June 16, at The Endocrine Society’s 90th Annual Meeting in San Francisco.

Society’s Attitudes Have Little Impact On Choice Of Sexual Partner:

A unique new study from the Swedish medical university Karolinska Institute (KI) suggests that the attitude of families and the public have little impact on if adults decide to have sex with persons of the same or the opposite sex. Instead, hereditary factors and the individual’s unique experiences have the strongest influence on our choice of sexual partners.

Teen Drivers Often Ignore Bans On Using Cellphones And Texting:

Teenage drivers’ cellphone use edged higher in North Carolina after the state enacted a cellphone ban for young drivers, a new Insurance Institute for Highway Safety study finds. This is the case even though young drivers and their parents said they strongly support the restrictions. Parents and teens alike believe the ban on hand-held and hands-free phone use isn’t being enforced. Researchers concluded that North Carolina’s law isn’t reducing teen drivers’ cellphone use.

Eastern Independence, Western Conformity?:

While the act of selecting an everyday writing utensil seems to be a simple enough task, scientists have found that it actually could shed light on complex cultural differences.

Scenes Of Nature Trump Technology In Reducing Low-level Stress:

Technology can send a man to the moon, help unlock the secrets of DNA and let people around the world easily communicate through the Internet. But can it substitute for nature?

How long does it take to synthetize a molecule of leucine anyway?

A dozen or so years ago, I drove my Biochemistry prof to tears with questions – she had 200 people in front of her and she tried hard to make Biochem interesting enough not to get us all bored to tears, and she was pretty good at that, as much as it is possible not to make people bored to tears with Biochem. But my questions exasperated her mainly because she could not answer them, because, as I learned later, the field of biochemistry was not able to answer those questions yet at the time: questions about dynamics – how fast is a reaction, how long it takes for a pathway to go from beginning to end, how many individual molecules are synthesized per unit of time?, etc.
Well, the field is starting to catch up with my questions lately – adding the temporal dimension to the understanding of what is going on inside the cell. In today’s issue of PLoS Biology, there is a new article that is trying to address exactly this concern: Dynamics and Design Principles of a Basic Regulatory Architecture Controlling Metabolic Pathways:

Single-cell organisms must constantly adjust their gene expression programs to survive in a changing environment. Interactions between different molecules form a regulatory network to mediate these changes. While the network connections are often known, figuring out how the network responds dynamically by looking at a static picture of its structure presents a significant challenge. Measuring the response at a finer time scales could reveal the link between the network’s function and its structure. The architecture of the system we studied in this work–the leucine biosynthesis pathway in yeast–is shared by other metabolic pathways: a metabolic intermediate binds to a transcription factor to activate the pathway genes, creating an intricate feedback structure that links metabolism with gene expression. We measured protein abundance at high temporal resolution for genes in this pathway in response to leucine depletion and studied the effects of various genetic perturbations on gene expression dynamics. Our measurements and theoretical modeling show that only the genes immediately downstream from the intermediate are highly regulated by the metabolite, a feature that is essential to fast recovery from leucine depletion. Since the architecture we studied is common, we believe that our work may lead to general principles governing the dynamics of gene expression in other metabolic pathways.

You should also check out the editorial synopsis for the paper, as it places it nicely into the context – exactly the kind of context I was looking for, in vein, back in my Biochem class: The Fourth Dimension of Biochemical Pathways:

Even on a plain wall chart, the intricacies of a cell’s biochemical pathways can boggle the mind. Hundreds of interweaving routes create and consume thousands of intermediate compounds, which are regulated by a dizzying number of enzymes at every step–a drop in nutrient A turns on pathway B to make intermediate C that is converted to regulator D that stimulates gene E that creates enzyme F to divert intermediate G into pathway H to…whew!…make nutrient A. London’s famously complex subway system is a piker compared to even the simplest cell.
But a static map can’t depict the complexity of a subway system in motion, and a wall chart can’t capture the four-dimensional dynamism of a cell in action, because neither one captures the crucial dimension of time. It matters not only where a train is going, but when it will get there, and it matters not only whether a pathway can produce a nutrient, but how quickly it responds when the nutrient is depleted. In a new study, Chen-Shan Chin, Victor Chubukov, Hao Li, and colleagues begin to address this problem by using a novel method to track the time course of a cell’s response to depletion of the amino acid leucine. They show that the time responses of upstream and downstream segments differ dramatically, and they go on to develop a mathematical model that predicts the response of the pathway to experimental perturbations.

This paper is too fresh for the new carnival, but perhaps in 10 years we’ll look at it and say “it’s a classic!”
Update: The grandmaster himself, Larry, answers my questions. I guess that kinetics were outside of the syllabus for a non-majors class and my questions wasted everyone’s time, and I never had to take any other Biochem afterwards.

Why do Academics do this blogging thing?

A number of my SciBlings (and their commenters) try to explain:
Janet
Chad
Martin
PhysioProf
DrugMonkey
Brian Switek
Alice
Jeremy Bruno
Grrrrrl

New carnival – The Giant’s Shoulders!

In the wake of great success of the Classic Science Papers Challenge, gg of Skulls in the Stars and I have decided to turn this into a regular monthly blog carnival.
Thus, gg has set up a carnival homepage and issued the call for posts and hosts.
You can read more about the carnival – named “The Giants’ Shoulders” – on the About page. In brief, once a month, the carnival will alight on one of the participating blogs. What kinds of blog posts are eligible?
Classic Papers – your blog post should describe what is in a paper that is considered to be a classical paper, or explanation why you think the paper should be considered classical, or foundational, or monumental, or seminal, or mind-boggling/earth-shaking/paradigm-shifting, or just plain cool. Then place the work in some kind of context: historical, philosophical, theoretical, technological, political, social. Try to persuade the readers that the paper is fascinating and really important. The paper cannot be younger than 10 years (thus, a moving target if this carnival lives a long time).
People – analyze the importance of a person in the historical development of science. Most people will cover the famous – Darwin, Newton, Linnaeus, etc. – but it is really cool if you dig out someone more obscure who nonetheless did something really important and we can see the importance from the present perspective.
Concepts – track the development and evolution of an historically important scientific concept and how the attitudes and understanding by the scientists (or lay audience) changed over time due to new discoveries.
The very first edition of the carnival will be held here, on A Blog Around The Clock, early morning on July 16th, so I need your entries by the end of July 15th (deadline is midnight EDT). Send your entries to me at: Coturnix AT gmail DOT com. Later we will have automated submissions through blogcarnival.com as well.
As this is the first edition, there is no requirement for a post to have been written ‘since the last edition’, thus, old blog posts are eligible. Also, in order to start the carnival with a Bang!, we will accept multiple posts by the same author, as well as posts that have already been included in the Classic Paper Challenge (I’ll take them automatically unless you say No). So, dig through your archives for posts that match the above criteria. I know there are plenty of those – several have already been included in the two Science Blogging Anthologies (I recently browsed them and noticed this).
Please spread the word about the carnival, bookmark the homepage, submit entries and think about topics to write about in the future.
Also, tell gg or me if you want to host a future edition – there should be one every month around the 15th of the month.

ClockQuotes

It is the neglect of timely repair that makes rebuilding necessary.
– Richard Whately

Blogrolling for today

Mystery of Mysteries


SAGACITY HARBOR


Psychescientia


Room 26 Cabinet of Curiosities


A Man With A Ph.D.

Revisiting academic blogging

It’s always interesting to hear what Eszter has to say about academics and blogging. She is right that the environment has changed and that more and more people know what blogs are and appreciate them (not everyone, though, but those are not academics, really).
She is also right that the term “blog” is not very useful – a blog is a piece of software: it is what you do with it that affects how you are perceived by peers, which in turn can affect your career trajectory. There are examples of people who lost prospects due to their blogging, but that was either because they were foolish (their loss) or the prospective employees were (the employees’ loss).
But there are also many counter-examples of people who got their jobs because of their blogging, or it was helpful. For instance, Deepak got a job with Amazon over twitter, I was a witness when Jason Calacanis hired a programmer via twitter, Anne-Marie, an undergrad, has been approached by potential graduate advisors due to her lovely blogging, and you know I got my job in the comments thread of a post on my blog.
Anyway, it is an interesting post and comment thread to read.

Father’s Day

If I knew how to write well, I would have written something like this.

Virginity Pledges Among the Willing, and Defining “Willing”

I briefly noted this study yesterday, but now W. D. Craft analyzes it in great detail:

I am pessimistic that the authors’ more careful conclusions and recommendations will be noticed. Instead I fear we’re in for more naive calls for “abstinence education” and coerced virginity pledges.

Elements

Also from Miriam, not the famous old (and beloved by my kids) rote memorization of elements – but you will never forget these few basic facts about a few major elements, because it is presented in a viscerally fun way:

Chick Development Series

Miriam points to this set of pictures of the development of the chicken embryo. As I have written before, I did have to learn how to precisely stage the chick embryos, both the older stages and the early stages, in order to manipulate them at exactly the right time. Cool pics.

ClockQuotes

Practical people would be more practical if they would take a little more time for dreaming.
– J. P. McEvoy

NC Symphony on the Green

Last night, my daughter and I went to hear the NC Symphony at the Green here in Southern Village. The entire square was packed (a couple of thousand people?). It was very enjoyable and an interesting choice of pieces. What was more interesting, and I am not sure I liked it, is the chosen ORDER of the pieces. The first half was filled with classics, the second half with pop stuff, including some not-well-known pieces. I am not sure that worked very well….
The concert started with Johann Strauss Sr.’s Radetzky March – a very powerful piece of music. But there is a reason why that is traditionally the very last piece to be played at the annual New Year’s concert in Vienna – it takes some time to build up, through the duration of the concert, one’s emotional response to music. The early parts of the concert are there to gradually break down your defenses. Then, at the end, there is nothing you can do to resist the powerful emotional effect of the Radetzky March – you nod, you clap, your foot keeps the beat, you cry…but you cannot watch and listen without passion unless you are a heartless, soulless corpse.
It is similar to “Hair” – I hate it when local radio stations play the hybrid combo of ‘Aquairus’ and ‘Let The Sunshine In’ for this same reason. The finale of ‘Let The Sunshine In’ means nothing on its own, without the intro. The crucial part is the slow crescendo, the gradual build-up of emotion during the first 2/3 of the song. Then, when the finale comes along, full-throated, open-airway, than it is one of the most powerful pieces of music ever – it moves you, makes you shake and cry and sing along out loud.
So, if I were a conductor of the NC Symphony I would have reversed the order – I would have played Irving Berlin’s Patriotic Overture, the Circus theme and pop-song medley first, followed by John William’s movie music from “Midway” and “Star Wars” (Yoda’s Theme), followed by Terry Mizesko’s Little Dance Suite (which is actually quite nice) and only then, once the brains of the people in the audience are already softened and captured and tuned in to emotion, start hammering with the powerful pieces like Tchaikovsky’s ‘Cossack Dance’ from “Mazzepa” and a couple of scenes from “Swan Lake”, Weber’s overture to “Abu Hassan”, and finally make the audience cry with Grieg’s ‘Morning Mood’ and “In the Hall of the Mountain Kind” from Peer Gynt – one of the most powerful pieces of music ever (interesting that he did not choose ‘Solveyg’s Song’ as part of this), and drive the last nail in your emotional coffin with the Radetzky March.
But those are quibbles. It was great fun and I am happy to see so many people show up. Not to mention that the execution of all pieces was absolutely perfect.

Your sciency movie reviews of The Incredible Hulk and The Happening on public radio!

You have to act quickly, though:

We’ve been airing audio comments on our new national public radio
show, The Takeaway (http://www.thetakeaway.org), for the past couple
of weeks. On Monday, we want to highlight your scientificky thoughts
on “THE INCREDIBLE HULK” and “THE HAPPENING”.
There’s a lot of genetics and plant biology and global warming stuff
there to sink your teeth into. Here’s what we’re looking for: By
Sunday at 3 p.m. Eastern, tell us two things about whichever movie you
saw:
1. ONE-PHRASE CAPSULE REVIEW — IT’S QUICK AND EASY!
Say, “It was __________”. Put an adjective or capsule review in the
blank: “Good,” “terrible,” “a waste of money,” “smashingly awesome,”
“not ‘happening’ for me,” etc. Be as clever or as straight-ahead as
you want to be. Both are equally great! We’ll smoosh them together
on the air.
2. ONE (SCIENCY) THING THAT STUCK OUT FOR YOU
See above. Portrayal of science, scientists, and science teachers
perhaps? Or a comment about climate change in movies?
We’re trying to get as many people on the air as possible, NOT JUST
SCIENCE BLOGGERS, so take one of the angles above (or another specific
angle), and speak in sound bites so you’re sure you’re getting to the
point quickly. This will keep the conversation in the on-air segment
moving along.
Record your comment by calling 1-877-8-MY-TAKE. Spell your name and
blog url so we can link to it. There’s a 60 second limit on the call,
so you probably won’t have more than 125 words.
or
Email an MP3 to mytake@thetakeaway.org. Include your name and blog
url so we can link to it.
Talk like you’re having a conversation with a friend. Pretend you’re
in the studio, talking with John and Adaora (the hosts!). Use any
trick you can think of to make it not sound like you’re reading!
—————————
TIPS: Write it out, read it out loud as you write, keep a check on your word
count (125 at the most!), and practice reading before you starting
recording.
If you’ve already written a review, read it out loud, and edit it down
to its essence. Remember that we’ll be linking back to your full
review so you don’t need to say it all on the air.

Brian Switek, Annalee Newitz, Matt Nisbet, PZ Myers and erv have already spoken about some of the movies – think about it and send your own brief comments and you may hear your voice on air on NPR!

My Picks From ScienceDaily – blog fodder?

Delayed Sleep Phase Syndrome Linked To Irregular Menstrual Cycles, Premenstrual Symptoms In Women:

Women with delayed sleep phase syndrome are more likely to report irregular menstrual cycles and premenstrual symptoms, according to a research abstract that will be presented on June 10 at SLEEP 2008, the 22nd Annual Meeting of the Associated Professional Sleep Societies (APSS).

All kinds of cycles affect each other in some way?
Pigeons Show Superior Self-recognition Abilities To Three Year Old Humans:

Keio University scientists have shown that pigeons are able to discriminate video images of themselves even with a 5-7 second delay, thus having self-cognitive abilities higher than 3-year-old children who have difficulty recognizing their self-image with only a 2 second delay.

Birdz Rulz!
Monumental Debt-for-Nature Swap Provides $20 Million To Protect Biodiversity In Madagascar:

The largest debt-for-nature swap agreement in Madagascar’s history was just signed between the Government of Madagascar and the Government of France, allocating roughly $20 million (13 million Euros) to preserve Madagascar’s rich biodiversity, WWF has announced.

Interesting development – can it be used elsewhere?
How The Brain Separates Audio Signals From Noise:

How are we able to follow a single conversation in the midst of a crowded and noisy room? Little is known about how the human brain accomplishes the seemingly simple task of extracting meaningful signals from noisy acoustic environments.

Virginity Pledges May Help Postpone Intercourse Among Youth:

Making a virginity pledge may help some young people postpone the start of sexual activity, according to a new RAND Corporation study.

RAND Corporation? How many red flags are waving around here right now!?

Will there be terrorist attacks if Obama is the President?

Obligatory Reading of the Day: The crazies and Obama:

If there is a President Obama come next Jan. 20, normal folks better brace for what the right-wing crazies have in mind. Because it’s becoming clear that they are winding themselves up now for a fresh spate of violence if Obama wins.
You can find the signs in the things they’re saying now, both on Internet forums and in the things they say when they think no one is listening.
———————-
In any event, a pattern is already developing, ranging from the Klan fellows who promise that Obama will be shot to the white supremacists who are actually rooting for him to win because they’re certain he will fail. We’re hearing a lot of language from the racist and “Patriot” right indicating that they expect a Democratic president to enact policies (particularly regarding gun control) that will inspire “civil war.” Which means they are looking for excuses to act out.
——————-
The extremist right went into remission, largely, with the election of George W. Bush; militias disbanded because their followers believed the threat of an oppressive, gun-grabbing, baby-killing “New World Order” had largely passed. They bided their time by forming Minutemen brigades. Now they can see that their “safe” era is coming to an end.
All this time, there really has been hankering for an excuse to start acting out violently, and they see any Democratic presidency as providing that excuse. But an Obama presidency in particular will do so.
——————–

Yup. There will be terrorist attacks if there is a Democratic presidents. But the perpetrators will not have dark skin.

Darwin Ceiling at the Museum

Anne-Marie found this article:

London’s Natural History Museum is to decorate the ceiling of one of its major rooms with a permanent art installation, inspired by evolutionary theory, in honour of Charles Darwin’s bicentennial. The 10 shortlisted entrants have now been announced and their ideas are on display.

You can see a slideshow of the proposals, but the article does not say exactly who is doing the choosing. Some internal committee, public at large?
Which proposal do you like the best? Perhaps we can influence the choosers if we write about this all over the blogs.

AP: Stupid, it hurts!

Associated Press is going to go extinct, due to being incorrigibly idiotic. In the era of blogs, Creative Commons licences, Open Source, Open Access… they are working actively at stopping traffic to their site!!! How much more stupid can they be? And the way they try to bully everyone around about this, I say…let them have it: never, ever link to their stories again – they are stolen stories to begin with, so take a couple of minutes to find the originals that AP stole from, then link to the original. Let the AP die.

ClockQuotes

Humor is, I think, the subtlest and chanciest of literary forms. It is surely not accidental that there are a thousand novelists, essayists, poets or journalists for each humorist. It is a long, long time between James Thurbers.
– Leo C. Rosten

My Picks From ScienceDaily

Mysterious Mountain Dinosaur May Be New Species:

A partial dinosaur skeleton unearthed in 1971 from a remote British Columbia site is the first ever found in Canadian mountains and may represent a new species, according to a recent examination by a University of Alberta researcher.

Memory Loss Linked To Common Sleep Disorder:

For the first time, UCLA researchers have discovered that people with sleep apnea show tissue loss in brain regions that help store memory. Reported in the June 27 edition of the journal Neuroscience Letters, the findings emphasize the importance of early detection of the disorder, which afflicts an estimated 20 million Americans.

Reverse Engineering The Brain To Model Mind-body Interactions:

When you grab a cold beverage out of the cooler this summer, what is really going on between your brain, your eyes and your hands?

Insomnia In Parents Can Result In Sleep Problems, Suicidal Behavior Among Their Offspring:

A history of chronic insomnia in parents is not only associated with elevated risk for insomnia but also with elevated risks for use of hypnotics, psychopathology and suicidal behavior in adolescent offspring, according to a research abstract that will be presented on June 12 at SLEEP 2008, the 22nd Annual Meeting of the Associated Professional Sleep Societies (APSS).

Ace Perceptual Skills Of Tennis Pros:

Tennis Grand Slam season is upon us once again with the French Open already over, and Wimbledon hot on its heels later in the month. Past studies have shown that tennis players outperform non-players at anticipating which shots will be played by their opponents and at quickly deciding what to do next under pressure but do Roger Federer and his fellow tennis players also benefit from better-developed visual information processing skills than non-players?

Delaying School Start Time By One Hour Positively Affects Adolescents’ Cognitive Performance:

Delaying an adolescent’s school start time by one hour has a positive effect on his or her cognitive performance, according to a research abstract that will be presented on June 12 at SLEEP 2008, the 22nd Annual Meeting of the Associated Professional Sleep Societies (APSS).

Large Areas Of Conservation Land Needed To Save Small Frogs, Turtles And Other Marine Species:

Scientists were surprised with findings of a recent study that reveals many animal species believed to persist in small contained areas actually need broad, landscape level conservation to survive.

Dingo Urine Offers Humane Solution To Kangaroo Cull:

Tasmania’s marsupials have been offered a life-line by researchers at Curtin University of Technology’s Department of Environmental Biology utilising cutting edge science involving fresh dingo urine.

Australian Dinosaur Found To Have South American Heritage:

Australia’s links to South America have just gotten a bit closer, but not due to economic forces, rather fossil forces. University of Queensland palaeontologist Dr Steve Salisbury was part of an international team of palaeontologists from the US, Argentina and Australia that identified a fossil that had previously only been found in South America.

Uncovering The Truth Behind The Largest Marsupial To Walk The Earth:

University of Queensland research is uncovering the truth behind the largest marsupial ever to walk the earth – the 2.5 tonne wombat-like Diprotodon.

Today’s carnivals

Carnival of Space #58 is up on Universe Today
Friday Ark #195 is up on Modulator

ClockQuotes

The hottest places in Hell are reserved for those who, in times of great moral crisis, maintain their neutrality.
– Dante Alighieri

What is the Internet doing to our brains?

The article is here, but it is too long for me and my attention span to read through. I got a snippet, though:

But that boon comes at a price. As the media theorist Marshall McLuhan pointed out in the 1960s, media are not just passive channels of information. They supply the stuff of thought, but they also shape the process of thought. And what the Net seems to be doing is chipping away my capacity for concentration and contemplation. My mind now expects to take in information the way the Net distributes it: in a swiftly moving stream of particles. Once I was a scuba diver in the sea of words. Now I zip along the surface like a guy on a Jet Ski.
I’m not the only one. When I mention my troubles with reading to friends and acquaintances–literary types, most of them–many say they’re having similar experiences. The more they use the Web, the more they have to fight to stay focused on long pieces of writing. Some of the bloggers I follow have also begun mentioning the phenomenon. Scott Karp, who writes a blog about online media, recently confessed that he has stopped reading books altogether. “I was a lit major in college, and used to be [a] voracious book reader,” he wrote. “What happened?” He speculates on the answer: “What if I do all my reading on the web not so much because the way I read has changed, i.e. I’m just seeking convenience, but because the way I THINK has changed?”
Bruce Friedman, who blogs regularly about the use of computers in medicine, also has described how the Internet has altered his mental habits. “I now have almost totally lost the ability to read and absorb a longish article on the web or in print,” he wrote earlier this year. A pathologist who has long been on the faculty of the University of Michigan Medical School, Friedman elaborated on his comment in a telephone conversation with me. His thinking, he said, has taken on a “staccato” quality, reflecting the way he quickly scans short passages of text from many sources online. “I can’t read War and Peace anymore,” he admitted. “I’ve lost the ability to do that. Even a blog post of more than three or four paragraphs is too much to absorb. I skim it.”

Then I skimmed the rest quickly, and copied and pasted (without reading, of course, who has the time?) this:

The human brain is almost infinitely malleable. People used to think that our mental meshwork, the dense connections formed among the 100 billion or so neurons inside our skulls, was largely fixed by the time we reached adulthood. But brain researchers have discovered that that’s not the case. James Olds, a professor of neuroscience who directs the Krasnow Institute for Advanced Study at George Mason University, says that even the adult mind “is very plastic.” Nerve cells routinely break old connections and form new ones. “The brain,” according to Olds, “has the ability to reprogram itself on the fly, altering the way it functions.”
As we use what the sociologist Daniel Bell has called our “intellectual technologies”–the tools that extend our mental rather than our physical capacities–we inevitably begin to take on the qualities of those technologies. The mechanical clock, which came into common use in the 14th century, provides a compelling example. In Technics and Civilization, the historian and cultural critic Lewis Mumford described how the clock “disassociated time from human events and helped create the belief in an independent world of mathematically measurable sequences.” The “abstract framework of divided time” became “the point of reference for both action and thought.”
The clock’s methodical ticking helped bring into being the scientific mind and the scientific man. But it also took something away. As the late MIT computer scientist Joseph Weizenbaum observed in his 1976 book, Computer Power and Human Reason: From Judgment to Calculation, the conception of the world that emerged from the widespread use of timekeeping instruments “remains an impoverished version of the older one, for it rests on a rejection of those direct experiences that formed the basis for, and indeed constituted, the old reality.” In deciding when to eat, to work, to sleep, to rise, we stopped listening to our senses and started obeying the clock.
The process of adapting to new intellectual technologies is reflected in the changing metaphors we use to explain ourselves to ourselves. When the mechanical clock arrived, people began thinking of their brains as operating “like clockwork.” Today, in the age of software, we have come to think of them as operating “like computers.” But the changes, neuroscience tells us, go much deeper than metaphor. Thanks to our brain’s plasticity, the adaptation occurs also at a biological level.

Can someone out there read all that and summarize it in, like, two sentences?

Are Academic Journals Obsolete?

An interesting discussion on Slashdot (you may need to log in to see all the comments).

How to top-down control the “grassroots”

GOP-ers really do not understand the Internet, do they?
More
(Via)

Announcing the Health Commons

Check this out on the Science Commons blog:

Science Commons’ mission is to speed the translation of basic research to useful discoveries, and we believe that a new approach is necessary to find more cures, faster. Today, we’re opening up the Health Commons, a project aimed at bringing the same efficiencies to human health that the network brought to commerce and culture.
————————
The Health Commons proposes a different approach: enabling more companies, foundations, laboratories or even individuals to conduct research on disease targets efficiently, by providing better access to the resources that large pharmaceutical companies assemble and integrate “in house.” To do this, Health Commons will facilitate the emergence of a “virtual marketplace,” or ecosystem, through which participants can more easily access the data, knowledge, materials and services for accelerating research.

Light and Time

Two of my SciBlings have recently covered papers that my readers should find interesting:
Joseph: Bright Light and Melatonin Treatment Improves Dementia:

A study published in JAMA indicates that treatment with bright light alone (1,000 lux), or bright light combined with melatonin, can improve symptoms in patients with dementia. Melatonin alone appeared to have a slight adverse effect.

Chris Chatham : Time Perception: In the Absence of “Time Sensation?”:

In their newly in-press TICS article, Ivry and Schlerf review the state of the art in cognitive modeling of time perception – perhaps the most basic form of perception which has no sensory system dedicated to it.

Smoke

There is a huge forest fire raging in Eastern North Carolina, unfortunately affecting the Pocosin Lakes National Wildlife Refuge. The smoke has now moved more than 100 miles to the west, which means right here. It’s been stinking of smoke all day, getting worse and worse as time went on. And it appears it will not get any better soon.

Today’s carnivals

I and the Bird #77 is up on Great Auk – or Greatest Auk?
The latest edition of Change of Shift is up on Nurse Ratched’s Place

My Picks From ScienceDaily

Woolly Mammoth Gene Study Changes Extinction Theory:

A large genetic study of the extinct woolly mammoth has revealed that the species was not one large homogenous group, as scientists previously had assumed, and that it did not have much genetic diversity.

Fossils Found In Tibet Revise History Of Elevation, Climate:

About 15,000 feet up on Tibet’s desolate Himalayan-Tibetan Plateau, an international research team led by Florida State University geologist Yang Wang was surprised to find thick layers of ancient lake sediment filled with plant, fish and animal fossils typical of far lower elevations and warmer, wetter climates.

The Symbolic Monkey? Animals Can Comprehend And Use Symbols, Study Of Tufted Capuchins Suggests:

From paintings and photographs to coins and credit cards, we are constantly surrounded by symbolic artefacts. The mental representation of symbols — objects that arbitrarily represent other objects — ultimately affords the development of language, and certainly played a decisive role in the evolution of our hominid ancestors. Can other animal species also comprehend and use symbols? Some evidence suggests that apes, our closest relatives, can indeed use symbols in various contexts. However, little is known about the symbolic competence of phylogenetically more distant species.

Early Humans Experimented To Get Bow And Arrow Just Right, Findings Suggest:

In today’s fast-paced, technologically advanced world, people often take the innovation of new technology for granted without giving much thought to the trial-and-error experimentation that makes technology useful in everyday life. When the “cutting-edge” technology of the bow and arrow was introduced to the world, it changed the way humans hunted and fought. University of Missouri archaeologists have discovered that early man, on the way to perfecting the performance of this new weapon, engaged in experimental research, producing a great variety of projectile points in the quest for the best, most effective system.

Unique Acoustic System Protects Manatees From Injuries And Death:

Researchers at Harbor Branch Oceanographic Institute at Florida Atlantic University have developed and improved upon a unique acoustic system designed to keep manatees from being injured or killed by flood gates and boat locks. Locks are used on sections of a canal or river that may be closed off by gates to control the water level to enable the raising and lowering of boats passing through.

Understanding Delayed Puberty: Scientists Study Migration Of Neurons That Enable Sexual Maturity in Zebrafish:

Scientists are watching a small group of neurons that enable sexual maturity and fertility make a critical journey: from where they form, near the developing nose, to deep inside the brain.

Moderate Exercise Can Improve Sleep Quality Of Insomnia Patients:

An acute session of moderate aerobic exercise, but not heavy aerobic or moderate strength exercises, can reduce the anxiety state and improve the sleep quality of insomnia patients, according to a research abstract that will be presented on June 11 at SLEEP 2008, the 22nd Annual Meeting of the Associated Professional Sleep Societies (APSS).

University Experts Dispute Hawk-eye’s Wimbledon Line Call:

Ahead of Wimbledon fortnight (23 June to 6 July), researchers from Cardiff University are advising that sports decision aids such as the Hawk-Eye system should come with a ‘health’ warning attached.

ClockQuotes

Nothing is more deceitful than the appearance of humility. It is often only carelessness of opinion, and sometimes an indirect boast.
– Jane Austen

Blogrolling for today

PLEKTIX


R.E.S.E.A.R.C.H.E.R.S.


Skulls in the Stars


Time to Eat the Dogs


Open Access Blog

HIV/AIDS awareness

After two years of raising awareness about living with HIV, Ron Hudson has decided to end the International Carnival of Pozitivities. The very last edition is now up on Black Looks.

Robert T. Pennock is coming to North Carolina

Today, Wednesday, June 11 at 6 to 8 pm, SCONC, the Science Communicators of North Carolina, meets NESCent, the National Evolutionary Synthesis Center:

Science communicators are invited to meet some NESCent researchers at the frontiers of evolutionary biology and hear from guest speaker Rob Pennock of Michigan State (who has appointments in evolutionary biology, computer science and … philosophy?! Whoa.) talking about how evolution can be demonstrated in fast-forward by “digital organisms,” a stroke he hopes will put creationism in retreat. Munchies and bevvies, of course. RSVP Kristin Jenkins

Location: Erwin Mill building, Bay A, 2024 W. Main St., Durham
Directions: http://www.nescent.org/about/directions.php

Today’s carnivals

Tangled Bank #107 is up on Syaffolee
Molecular and Cell Biology Carnival #3 is up on ScienceRoll
The 175th edition of the Carnival of Education is up on Learn Me Good

ClockQuotes

Wanted: Young, skinny, wirey fellows not over 18. Must be expert riders willing to risk death daily. Orphans preferred. Wages $25 per week.
– Pony Express Advertisement

New and Exciting in PLoS ONE

60 new articles just got published in PLoS ONE a few minutes ago. Here are some of the greatest hits (IMHO):
LOL-Federer.jpg
Enhanced Temporal but Not Attentional Processing in Expert Tennis Players:

In tennis, as in many disciplines of sport, fine spatio-temporal resolution is required to reach optimal performance. While many studies on tennis have focused on anticipatory skills or decision making, fewer have investigated the underlying visual perception abilities. In this study, we used a battery of seven visual tests that allowed us to assess which kind of visual information processing is performed better by tennis players than other athletes (triathletes) and non-athletes. We found that certain time-related skills, such as speed discrimination, are superior in tennis players compared to non-athletes and triathletes. Such tasks might be used to improve tennis performance in the future.

Effects of Experimental Brood Size Manipulation and Gender on Carotenoid Levels of Eurasian Kestrels Falco tinnunculus:

Animals use carotenoid-pigments for coloration, as antioxidants and as enhancers of the immune system. Carotenoid-dependent colours can thus signal individual quality and carotenoids have also been suggested to mediate life-history trade-offs. To examine trade-offs in carotenoid allocation between parents and the young, or between skin coloration and plasma of the parents at different levels of brood demand, we manipulated brood sizes of Eurasian kestrels (Falco tinnunculus). Brood size manipulation had no overall effect on plasma carotenoid levels or skin hue of parents, but female parents had twice the plasma carotenoid levels of males. Males work physically harder than females and they might thus also use more carotenoids against oxidative stress than females. Alternatively, females could be gaining back the carotenoid stores they depleted during egg-laying by eating primarily carotenoid-rich food items during the early nestling stage. Fledglings in enlarged broods had higher plasma carotenoid concentrations than those in reduced broods. This difference was not explained by diet. In light of recent evidence from other species, we suggest it might instead be due to fledglings in enlarged broods having higher testosterone levels, which in turn increased plasma carotenoid levels. The partial cross-foster design of our experiment revealed evidence for origin effects (genetic or maternal) on carotenoid levels of fledglings, but no origin-environment interaction. These results from wild birds differ from studies in captivity, and thus offer new insights into carotenoid physiology in relation to division of parental care and demands of the brood.

Tune Deafness: Processing Melodic Errors Outside of Conscious Awareness as Reflected by Components of the Auditory ERP:

Tune deafness (TD) is a central auditory processing disorder characterized by the inability to discriminate pitch, reproduce melodies or to recognize deviations in melodic structure, in spite of normal hearing. The cause of the disorder is unknown. To identify a pathophysiological marker, we ascertained a group of severely affected TD patients using the Distorted Tunes Test, an ecologically valid task with a longstanding history, and used electrophysiological methods to characterize the brain’s responses to correct and incorrect melodic sequences. As expected, we identified a neural correlate of patients’ unawareness of melodic distortions: deviant notes modulated long-latency auditory evoked potentials and elicited a mismatch negativity in controls but not in affected subjects. However a robust P300 was elicited by deviant notes, suggesting that, as in blindsight, TD subjects process stimuli that they cannot consciously perceive. Given the high heritability of TD, these patients may make it possible to use genetic methods to study cellular and molecular mechanisms underlying conscious awareness.

Pattern of the Divergence of Olfactory Receptor Genes during Tetrapod Evolution:

The olfactory receptor (OR) multigene family is responsible for the sense of smell in vertebrate species. OR genes are scattered widely in our chromosomes and constitute one of the largest gene families in eutherian genomes. Some previous studies revealed that eutherian OR genes diverged mainly during early mammalian evolution. However, the exact period when, and the ecological reason why eutherian ORs strongly diverged has remained unclear. In this study, I performed a strict data mining effort for marsupial opossum OR sequences and bootstrap analyses to estimate the periods of chromosomal migrations and gene duplications of OR genes during tetrapod evolution. The results indicate that chromosomal migrations occurred mainly during early vertebrate evolution before the monotreme-placental split, and that gene duplications occurred mainly during early mammalian evolution between the bird-mammal split and marsupial-placental split, coinciding with the reduction of opsin genes in primitive mammals. It could be thought that the previous chromosomal dispersal allowed the OR genes to subsequently expand easily, and the nocturnal adaptation of early mammals might have triggered the OR gene expansion.

LOL%20baby.jpgYoung Infants’ Neural Processing of Objects Is Affected by Eye Gaze Direction and Emotional Expression:

Eye gaze is an important social cue which is used to determine another person’s focus of attention and intention to communicate. In combination with a fearful facial expression eye gaze can also signal threat in the environment. The ability to detect and understand others’ social signals is essential in order to avoid danger and enable social evaluation. It has been a matter of debate when infants are able to use gaze cues and emotional facial expressions in reference to external objects. Here we demonstrate that by 3 months of age the infant brain differentially responds to objects as a function of how other people are reacting to them. Using event-related electrical brain potentials (ERPs), we show that an indicator of infants’ attention is enhanced by an adult’s expression of fear toward an unfamiliar object. The infant brain showed an increased Negative central (Nc) component toward objects that had been previously cued by an adult’s eye gaze and frightened facial expression. Our results further suggest that infants’ sensitivity cannot be due to a general arousal elicited by a frightened face with eye gaze directed at an object. The neural attention system of 3 month old infants is sensitive to an adult’s eye gaze direction in combination with a fearful expression. This early capacity may lay the foundation for the development of more sophisticated social skills such as social referencing, language, and theory of mind.

Meta-Analysis of the Effects of Predation on Animal Prey Abundance: Evidence from UK Vertebrates:

Controlling vertebrate predators is one of the most widespread forms of wildlife management and it continues to cause conflict between stakeholders worldwide. It is important for managers and policy-makers to make decisions on this issue that are based on the best available scientific evidence. Therefore, it is first important to understand if there is indeed an impact of vertebrate predators on prey, and then to quantify this impact. Using the UK as a case study, we use a meta-analytical approach to review the available evidence to assess the effect of vertebrate predation on animal prey abundance. We find a significant effect of predators on prey abundance across our studies. On average, there is a 1.6 fold increase in prey abundance in the absence of predation. However, we show significant heterogeneity in effect sizes, and discuss how the method of predator control, whether the predator is native or non-native, and aspects of study design, may be potential causes. Our results allow some cautious policy recommendations to be made regarding the management of predator and prey populations. Meta-analysis is an important tool for understanding general patterns in the effect of predators on prey abundance across studies. Such an approach is especially valuable where management decisions need to be made in the absence of site-specific information.

An Analysis of News Media Coverage of Complementary and Alternative Medicine:

To examine the accuracy and adequacy of lay media news stories about complementary and alternative medicines and therapies. A descriptive analysis of news stories about complementary and alternative medicine (CAM) in the Australian media using a national medical news monitoring website, mediadoctor.org.au. Each story was rated against 10 criteria by two individuals. Consensus scores of 222 news articles reporting therapeutic claims about complementary medicines posted on mediadoctor.org.au between 1 January 2004 and 1 September 2007 were calculated. The overall rating score for 222 CAM articles was 50% (95% CI 47% to 53%). There was a statistically significant (F = 3.68, p = 0.006) difference in cumulative mean scores according to type of therapy: biologically based practices (54%, 95% CI 50% to 58%); manipulative body based practices (46%, 95% CI 39% to 54%), whole medical systems (45%, 95% CI 32% to 58%), mind body medicine (41%, 95% CI 31% to 50%) and energy medicine (33%, 95% CI 11% to 55%). There was a statistically significant difference in cumulative mean scores (F = 3.72, p = 0.0001) according to the clinical outcome of interest with stories about cancer treatments (62%, 95% CI 54% to 70%) scoring highest and stories about treatments for children’s behavioural and mental health concerns scoring lowest (31%, 95% CI 19% to 43%). Significant differences were also found in scores between media outlets. There is substantial variability in news reporting practices about CAM. Overall, although they may be improving, the scores remain generally low. It appears that much of the information the public receives about CAM is inaccurate or incomplete.

Inducible Ablation of Melanopsin-Expressing Retinal Ganglion Cells Reveals Their Central Role in Non-Image Forming Visual Responses:

Rod/cone photoreceptors of the outer retina and the melanopsin-expressing retinal ganglion cells (mRGCs) of the inner retina mediate non-image forming visual responses including entrainment of the circadian clock to the ambient light, the pupillary light reflex (PLR), and light modulation of activity. Targeted deletion of the melanopsin gene attenuates these adaptive responses with no apparent change in the development and morphology of the mRGCs. Comprehensive identification of mRGCs and knowledge of their specific roles in image-forming and non-image forming photoresponses are currently lacking. We used a Cre-dependent GFP expression strategy in mice to genetically label the mRGCs. This revealed that only a subset of mRGCs express enough immunocytochemically detectable levels of melanopsin. We also used a Cre-inducible diphtheria toxin receptor (iDTR) expression approach to express the DTR in mRGCs. mRGCs develop normally, but can be acutely ablated upon diphtheria toxin administration. The mRGC-ablated mice exhibited normal outer retinal function. However, they completely lacked non-image forming visual responses such as circadian photoentrainment, light modulation of activity, and PLR. These results point to the mRGCs as the site of functional integration of the rod/cone and melanopsin phototransduction pathways and as the primary anatomical site for the divergence of image-forming and non-image forming photoresponses in mammals.

LOl%20capuchin.jpgPreference Transitivity and Symbolic Representation in Capuchin Monkeys (Cebus apella):

Can non-human animals comprehend and employ symbols? The most convincing empirical evidence comes from language-trained apes, but little is known about this ability in monkeys. Tokens can be regarded as symbols since they are inherently non-valuable objects that acquire an arbitrarily assigned value upon exchange with an experimenter. Recent evidence suggested that capuchin monkeys, which diverged from the human lineage 35 million years ago, can estimate, represent and combine token quantities. A fundamental and open question is whether monkeys can reason about symbols in ways similar to how they reason about real objects. Here we examined this broad question in the context of economic choice behavior. Specifically, we assessed whether, in a symbolic context, capuchins’ preferences satisfy transitivity – a fundamental trait of rational decision-making. Given three options A, B and C, transitivity holds true if A≥B, B≥C and A≥C (where ≥ indicates preference). In this study, we trained monkeys to exchange three types of tokens for three different foods. We then compared choices monkeys made between different types of tokens with choices monkeys made between the foods. Qualitatively, capuchins’ preferences revealed by the way of tokens were similar to those measured with the actual foods. In particular, when choosing between tokens, monkeys displayed strict economic preferences and their choices satisfied transitivity. Quantitatively, however, values measured by the way of tokens differed systematically from those measured with the actual foods. In particular, for any pair of foods, the relative value of the preferred food increased when monkeys chose between the corresponding tokens. These results indicate that indeed capuchins are capable of treating tokens as symbols. However, as they do so, capuchins experience the cognitive burdens imposed by symbolic representation.

Disturbance of Social Hierarchy by an Invasive Species: A Gene Transcription Study:

Ecological and evolutionary changes in native populations facing invasion by exotic species are increasingly reported. Recently, it has been shown that competition with exotic rainbow trout (Oncorhynchus mykiss) disrupts dominance hierarchies within groups of native Atlantic salmon (Salmo salar). The genetic and molecular actors underlying phenotypic plasticity are poorly understood. Here, we aimed at identifying the genetic and molecular actors contributing to this plastic loss of dominance hierarchies as well as at identifying genes implicated in behaviours related to social dominance. By using microarrays, we compared the genome-wide gene transcription profiles in brains of dominant versus subordinate juvenile Atlantic salmon in presence or absence of a competitive rainbow trout. Adding the trout competitor resulted in dominant and subordinate salmon being more similar, both behaviourally and at the level of brain gene transcription patterns. Genes for which transcription levels differed between dominant and subordinate salmon in the absence of exotic trout were mainly over-expressed in dominant salmon and included genes implicated in protein turnover, neuronal structural change and oxygen transport. Our study provides one of the few examples demonstrating a close interplay between behavioural plasticity and gene transcription, therefore contributing to the understanding of the molecular mechanisms underlying these processes in an ecologically relevant context.

Today’s carnivals

Grand Rounds (4) 38 are up on NHS Blog Doctor
The latest Homeschooling Carnival is up in The Common Room.

Birds In PLoS ONE!

If you are an astute watcher of the PLoS ONE homepage (or the PLoS Blog, or my blog for that matter), you may have noticed that PLoS ONE now has something like a ‘theme of the month’, i.e., a single, broad topic that we highlight in several different ways on the homepage, blog, in e-mails, etc. We check out the most viewed and downloaded papers on the topic and interview the authors and Academic Editors of those papers, etc. Last month, in May, the theme was Cell Signaling. This month, June ’08, the overarching theme is The Birds!
If you search PLoS ONE for bird + avian (keep clicking ‘Next’ at the bottom of the page again and again), you will see that PLoS ONE has published several dozen interesting articles on various aspects of bird biology. Those articles can be roughly classified into three categories:
– evolution/ecology/conservation
– physiology/neuroscience/behavior
– avian flu
Some papers span two or even all three of the topics (e.g., on the way ecology and behavior of migratory birds affects the epidemiology of bird flu). When we checked the stats to see which bird-related papers have been viewed the most, these articles emerged as our Top 5:
Coevolution of Male and Female Genital Morphology in Waterfowl. Interviews with the author and the Academic Editor of this paper can be found here.
A Visual Pathway Links Brain Structures Active during Magnetic Compass Orientation in Migratory Birds (there is also a brief blurb by the author at the above link).
Cross-Clade Protective Immune Responses to Influenza Viruses with H5N1 HA and NA Elicited by an Influenza Virus-Like Particle
Leg Disorders in Broiler Chickens: Prevalence, Risk Factors and Prevention
Cross-Protection against Lethal H5N1 Challenge in Ferrets with an Adjuvanted Pandemic Influenza Vaccine
There will be something new about Birds In PLoS every Tuesday night on the ONE homepage this month, as well as one or two Journal Clubs on bird-related papers (do you want to do one of these – call me). As I am a bird-man myself, this makes me happy. I hope you like what we have as well.

My picks from ScienceDaily – Sleep edition

Circadian Math: 1 Plus 1 Doesn’t Always Equal 2:

Like a wristwatch that needs to be wound daily for accurate time-telling, the human circadian system — the biological cycles that repeat approximately every 24 hours — requires daily light exposure to the eye’s retina to remain synchronized with the solar day. In a new study published in the June issue of Neuroscience Letters, researchers have demonstrated that when it comes to the circadian system, not all light exposure is created equal.

Morningness Is A Predictor Of Better Grades In College:

Morningness is a predictor of better grades in college, according to a research abstract that will be presented on June 9 at SLEEP 2008, the 22nd Annual Meeting of the Associated Professional Sleep Societies (APSS). The study, authored by Kendry Clay, of the University of North Texas, focused on 824 undergraduate students who were enrolled in psychology classes. The subjects completed a health survey which included questions regarding sleep habits and aspects of daytime functioning.

Evening-type College Students On Early Daytime Class Schedules At A Disadvantage:

Eveningness is associated with not only later phases of a person’s sleep-wake cycle, but also with sleep irregularities, more pronounced sleep restriction during the week, and higher sleep compensation on weekends. Evening type college students may, therefore, need a sleep education that helps them adjust to imposed morning schedules, and would probably benefit from later class schedules, according to a research abstract that will be presented on June 10 at SLEEP 2008, the 22nd Annual Meeting of the Associated Professional Sleep Societies (APSS).

Excessive Mobile Phone Use Affects Sleep In Teens, Study Finds:

Teenagers who excessively use their cell phone are more prone to disrupted sleep, restlessness, stress and fatigue, according to a research abstract that will be presented on June 9 at SLEEP 2008, the 22nd Annual Meeting of the Associated Professional Sleep Societies (APSS).

Is ADHD An Advantage For Nomadic Tribesmen?:

A propensity for attention deficit hyperactivity disorder (ADHD) might be beneficial to a group of Kenyan nomads, according to new research. Scientists have shown that an ADHD-associated version of the gene DRD4 is associated with better health in nomadic tribesmen, and yet may cause malnourishment in their settled cousins.

Poor Sleep May Increase Odds Of Emotional, Behavioral Disturbances Including ADHD:

Insufficient sleep among adolescents may not only contribute to lower grades and a lack of motivation, but may also increase the odds of serious levels of emotional and behavioral disturbances, including ADHD, according to a research abstract that will be presented on June 9 at SLEEP 2008, the 22nd Annual Meeting of the Associated Professional Sleep Societies (APSS).

Bright Light Therapy May Improve Nocturnal Sleep In Mothers:

Bright light therapy may improve a mother’s nocturnal sleep, decrease daytime sleepiness and be beneficial to her well-being, according to a research abstract that will be presented on June 9 at SLEEP 2008, the 22nd Annual Meeting of the Associated Professional Sleep Societies (APSS).

Extra Sleep Improves Athletic Performance:

Getting extra sleep over an extended period of time improves athletic performance, mood and alertness, according to a research abstract that will be presented on June 9 at the SLEEP 2008 22nd Annual Meeting of the Associated Professional Sleep Societies (APSS) in Baltimore, Md.

Fat Intake Negatively Influences The Sleep Pattern In Healthy Adults:

Total fat intake and dinner fat intake seem to influence negatively the sleep pattern in healthy adults, according to a research abstract that will be presented on June 10 at SLEEP 2008, the 22nd Annual Meeting of the Associated Professional Sleep Societies (APSS).

Ethical Implications Of Modifying Lethal Injection Protocols:

A team of medical, ethical, and legal scholars argues in PLoS Medicine that in some US states the modification of lethal injection protocols is tantamount to experimentation upon prisoners without the prisoners’ consent and without any ethical safeguards.

Major League Baseball Teams With Greater Circadian Advantage Are More Likely To Succeed:

The magnitude of circadian advantage influences the outcome of Major League Baseball (MLB) games in that teams with greater circadian advantage are more likely to win, according to a research abstract that will be presented on June 10 at SLEEP 2008, the 22nd Annual Meeting of the Associated Professional Sleep Societies (APSS).

Sleepy Driving Highly Prevalent Among College Students:

A high prevalence of sleepy driving is reported among college students, according to a research abstract that will be presented on June 9 at SLEEP 2008, the 22nd Annual Meeting of the Associated Professional Sleep Societies (APSS).

Poor Sleep Quality And Insomnia Associated With Suicidal Symptoms Among College Students:

Poor sleep quality and insomnia are significantly associated with suicidal symptoms among college undergraduates, according to a research abstract that will be presented on June 9 at SLEEP 2008, the 22nd Annual Meeting of the Associated Professional Sleep Societies (APSS).

Decreased Total Sleep Time Associated With Increased REM Sleep During Subsequent Naps:

Decreased nightly total sleep time, even within the normal range, is associated with an increased percentage of REM sleep during subsequent naps, according to a research abstract that will be presented on June 10 at SLEEP 2008, the 22nd Annual Meeting of the Associated Professional Sleep Societies (APSS).

Insomnia Among Returning War Vets Is As Severe As Patients With Chronic Insomnia:

Insomnia together with post-deployment adjustment disorders among returning war veterans is as severe as patients suffering from chronic insomnia, according to a research abstract that will be presented on June 10 at SLEEP 2008, the 22nd Annual Meeting of the Associated Professional Sleep Societies (APSS).

Prenatal Drug Exposure Linked To Sleep Problems In Children:

In the first study across time into late childhood of the effects of prenatal drug exposure on sleep, prenatal drug exposure is associated with greater sleep problems in children. In addition, nicotine has a unique effect, and early sleep problems predict later sleep problems, according to a research abstract that will be presented on June 10 at SLEEP 2008, the 22nd Annual Meeting of the Associated Professional Sleep Societies (APSS).

Sleep Problems Linked To Obesity, Lower Quality Of Life In School-aged Children:

A research abstract that will be presented on June 10 at SLEEP 2008, the 22nd Annual Meeting of the Associated Professional Sleep Societies (APSS), finds an increased prevalence of sleep problems among school-aged children who are obese and an association between increased weight and lower quality of life.

Link Between Migranes And Sleep Disorders In Children:

Children with a migraine headache are more likely to have sleep disorders, such as obstructive sleep apnea (OSA) and lack of sleep, than children without a migraine, according to a research abstract on the effects of headaches on children’s sleep patterns that will be presented on June 10 at SLEEP 2008, the 22nd Annual Meeting of the Associated Professional Sleep Societies (APSS).

ClockQuotes

Change is no modern invention. It is as old as time and as unlikely to disappear. It has always to be counted on as of the essence of human experience.
– James Rowland Angell

New Media vs. Old Media Redux (with Survey)

Remember Chez Sapienza? The guy who was fired from CNN for having the gall to write a blog?
Well, a lot of people with brains got upset about this. And Simon Owens decided to investigate further, to see what is the general attitude about blogging among the Corporate Media control freaks. So he did a survey, and has just posted the results. Check them out.

Why Toll Access has no legs?

For the same reason snakes have no legs. Or perhaps not. It is difficult to find out.