Category Archives: Blogging

Sarah Palin has a blog!

Well, not really, but someone is running a satirical blog named Welcome To The PalinDrome: Sarah Palin’s Blog.
Humor and satire are important part of every campaign. While I may not find conservative humor funny (it is too often mean and targets the weak and defenseless), I understand that conservatives find it funny and it helps them rally their own troops. So do we on our side and there are some very funny bloggers out there. This spoof blog is part of that tradition.
What is the funniest is checking out the comments and seeing that some commenters, both Lefty and Righty, did not see that this an obvious spoof. And it is OBVIOUS! They post serious comments as if the blog was really Sarah Palin’s 😉
If they took just one second to look around, they would have noticed this note on the right sidebar there:

This site is a work of satire and is not affiliated with Sarah Palin in any way.

Using Social Networking to Prepare for Hurricane Gustav

Connie Bensen has assembled all the relevant links and tags so you can follow Gustav and, if you are in the area, organize the response.

How kids use social networks

Wayne interviewed three local kids about the way they use social networks and blogs:

School has just started and we had a chance to sit down with three bright kids, Toby, Dominique, and Samantha to talk about how they use social networks such as MySpace and Facebook. But not only social networks, we asked them about blogging and how they were introduced to twitter. Also see what the future paintball king, dancer and artist had to say about their parents being friends with them on social networks and their goals in life.

I am my son’s Top Friend on Facebook, and we follow each other there daily.

ResearchBlogging.org, v.2.0

The cat is out of the bag! The version2.0 of ResearchBlogging.org is ready to go and you can test it out:

After a week of late nights and hard coding, our development team has released the beta version of the site to our entire userbase! You can visit the new site here:
http://72.32.57.144/index.php/
We are planning on launching the site at the researchblogging.org address over the weekend, but you can get a head start now setting up your account, customizing it the way you like, and trying out all our new features. (note: All passwords have been reset, so you’ll need to use the “forgot password?” link to set your password)
There will be much, much more on our official launch date of September 2, but here is a partial list of new features:
* Multiple language support (and 30 new German-language bloggers!)
* Topic-specific RSS feeds
* Post-by-post tagging with topics and subtopics
* “Recover password” feature
* Email alerts when there is a problem with posts
* Users can flag posts that don’t meet our guidelines
* Customized user home pages with bios and blog descriptions
* Blogger photos/other images displayed with each post
* Multiple bloggers per blog
* Multiple blogs per blogger
* Advanced troubleshooting features
We’re super excited that the system is ready to go, and we look forward to seeing you on the new site!

Well, we took a little look at the PLoS HQ and noticed that out of 87 pages of ‘all results’ there are 8 pages of ‘PLoS’ results – implying that about 10% of all the BPR3 posts are on PLoS papers from all seven journals – and of those, 4 pages are just on PLOS ONE papers – which is about 5%. All I can say is w00t! for Open Access – when bloggers can read, bloggers will write.

Science Blogging – London 2008

Finallogo.jpgThe London Science Blogging Conference is about to begin. Check out the Conference Programme the who’s who list of attendees and the discussion in the Science Blogging 2008: London NN forums, a FriendFeed room and a Facebook page.
We will be wathing closely, getting ideas, learning stuff, and making our own program for the ScienceOnline’09 – soon to be revealed to the world.

A week of totally cool science blogging

While everyone else has been focused on politics this week, several science bloggers posted some amazing posts about, gasp, science! Check these out – amazing weekend reading (and potential anthology entries!):
Neurophilosophy: Wilder Penfield, Neural Cartographer:

The patient lies on the operating table, with the right side of his body raised slightly. The anaesthetist sterilizes his scalp and injects it with Nupercaine to produce analgesia – the patient will remain fully conscious throughout the procedure. Behind the surgical drapes, three large incisions are made in his scalp. A large flap of bone is then cut from his skull, and turned downward to expose the surface of his brain. The ultraviolet lights which illuminate the operating theater and keep the air sterile are positioned in such a way that they do not shine directly upon the cortex…..

SciCurious: The Child as a Projectile:

I had to cover this review, just because I saw the title. If I ever have a child (pity that poor child) they will be guinea pigs for experiments on “children as projectiles”. I can’t help it, every time I read the phrase, I think of someone putting a baby with a little helmet into a big slingshot. “Guess what, hon? We’re going to do science today!”

SciCurious: Cane Toads:

I have a weird fascination with toads (and frogs). They’re cute! They have cute feet. Slime is cool. And all the ones I’ve ever held never bit me (you can never say the same thing with mammals). I did try to keep some once, but buying crickets on a weekly basis is no fun, and raising your own is difficult.

Samia: Textbooks and reproduction– why they gotta embellish?:

Then I flipped to another chapter, which utilized some interesting language. See, spermatogonia exist in an environment dominated by testosterone. Estrogen, on the other hand, nurtures maturing germ cells and maintains suitable conditions for fertilization until The One True Sperm penetrates a woman’s egg. Really, guys? Really? Testosterone molecules run around in assless chaps rounding up them swimmers while Mommy Estrogen tends to the Follicle Nursery? I’m surprised because I don’t really encounter this kind of language in other areas of endocrinology/physiology. A hormone facilitates something. Or triggers a reaction, or exhibits a negative-feedback control on some function.

Abel PharmBoy: Century-old rule of chemistry overturned? Meh, not so fast:

The press release from the University of Warwick describes what appear to be really cool electrochemical experiments with ultramicroelectrodes and confocal microscopy that are to be published in the 26 August 2008 issue of the Proceedings of the National Academy of Sciences (PNAS). The research team apparently provides direct evidence that increasing carbon chain length of carboxylic acids (acetic, butanoic, valeric, and hexanoic) cause them to pass through membranes progressively more slowly.
But instead of being at odds with the Meyer-Overton correlation, this is exactly what one would expect from the Meyer-Overton experiments.

Ed Yong: Holy haemorrhage Batman! Wind turbines burst bat lungs:

Conservationists often object to wind farms because of the possibility that they could kill birds. But birds aren’t the only flying animals to be taken out by turbines – it turns out that bats often lose their lives too, and not in quite the way you might imagine.

Duke Bloggerhood

A nice article about Durham bloggers today (it will be on paper later, online for now). Bloggers featured or linked include, among others, my friends Anton Zuiker, Pam Spaulding, Sheril Kirshenbaum and Lenore Ramm.

Scienceblogs Millionth Comment parties!

Yes, you have heard right. There will be parties around the world, wherever SciBlings are, celebrating the one millionth comment on scienceblogs.com, expected to happen some time mid-September.
You can meet Sciblings and fellow-readers at parties in Michigan, Oklahoma, Iowa, Minnesota, New York, San Francisco, Vancouver, London and other places – watch all the blogs for announcements of the details.
As the North Carolina contingent here is the largest of them all at scienceblogs (7-8 SciBlings, depends on the exact date of the event and how one does the counting), there will be a big event here on September 20th.
We will start in the morning, meeting at the N.C. Zoo in Asheboro and seeing the exhibit led by one of their staffers (perhaps seeing some stuff behind the scenes). Then we will spend about an hour in their new Valerie H. Schindler Wildlife Learning Center (scroll down to read more) to meet with the zoo stuff and researchers, with the members of the NC Zoo society (whose President is a wonderful blogger), the teachers and students at the Zoo School, and then proceed to a nearby watering hole for some food and drinks (yes, serving of alcohol just got legalized in Asheboro a few months ago).
I (and other NC sciblings) will post more information once we have it, but it would be nice if you could post a comment here and on other NC scienceblogs if you can/will show up so we get an idea of potential numbers.

How to Read a Blog post (and books and stuff….)

Interesting post (based on one of my favourite books which may warrant a re-reading after many years – Adler’s “How to Read a Book” but adapted to online reading) How to Read by Brian Clark:

We know that people don’t read well online. They ruthlessly scan for interesting chunks of information rather than digesting the whole, and they want to be entertained in the process. This is the reality that online publishers deal with, so we disguise our nuggets of wisdom with friendly formatting and clever analogies.
But that doesn’t mean you should read that way.
If you’ve been publishing online for even a small amount of time, you’ve seen someone leave a comment that clearly demonstrates they didn’t read or understand the content. Even more painful is when someone writes a responsive post that clearly misses the entire point of the original article.
While it happens to us all from time to time, you do not want to consistently be one of these people. Credibility is hard enough to establish without routinely demonstrating that you fail to grasp a topic that you’ve chosen to write about, whether in an article or a comment.
Plus, if you’re doing nothing but scanning hundreds of RSS feeds and reading purely to be entertained, you’re at a disadvantage. Someone in your niche or industry is likely reading books and reading deeper to become the higher authority.
———————–
For example, next time you read a challenging blog post and you’re not clear on a point, your first inclination might be to ask a question in the comments. Instead, read the post again. If it’s still not clear, go do some research on your own to see if you can figure it out. Then when you finally do ask a question, you’re on an entirely different level of understanding and can likely engage in a meaningful dialogue with the author.

Read the whole thing. Carefully. With focus and understanding. Syntopically (you’ll have to read it to see what it means, then will have to read what OTHER people say on the topic before posting an intelligent comment).

Welcome the new SciBling!

I knew this for quite a long time and it was hard to keep my lips sealed about this as the news were so exciting. But today, it’s official. So, go say Hello to Blake Stacey at Science After Sunclipse, the newest acquisition by The Borg!

Deep Sea News on Discovery

In about a week, Deep Sea News will move to Discoverry blogs:

Congratulations to Craig, Peter and Kevin! We’ll miss you here, but we will still read you at your new digs.

Court win for Fair Use

Judge Rules That Content Owners Must Consider Fair Use Before Sending Takedowns:

A judge’s ruling today is a major victory for free speech and fair use on the Internet, and will help protect everyone who creates content for the Web. In Lenz v. Universal (aka the “dancing baby” case), Judge Jeremy Fogel held that content owners must consider fair use before sending takedown notices under the Digital Millennium Copyright Act (“DMCA”).

BlogTogether 2008 Backyard Barbecue

Update: Register, login and edit the wiki if you intend to show up tonight.
———————–
Anton just sent a message to the Triangle blogging community:

The annual BlogTogether Backyard Barbecue is this Saturday, August 23 from 5pm on, at my home in Durham. I’ll provide a cold keg of Carolina Brewery suds, a hot grill and tasty pulled pork barbecue, and a deck perfect for conversing into the night. More details at http://blogtogether.org/index.php/wiki.

In NC next weekend? Join us!

Comments

This blog is slowly approaching a nice round number – 10,000 comments. I know this is not Pharyngula where this would take an hour or two to fill, but still, we can get the remaining 200+ comments in over the next few days, can’t we?
The person who posts the 10,000th non-spam comment will get a prize – something (your choice exactly what) from the A Blog Around The Clock store.

Guest Posts on A Blog Around The Clock

You all loved it when my Mom wrote two 5-part series of guest-posts. You remember the exciting reports from herpetology survey by Kevin when he was in China. My friend Heinrich wrote two guest-posts about sleep. And most recently Anne-Marie wrote a guest-post about daily rhythms in bats. As you all appeared to like these posts, I thought I’d ask another 4-5 bloggers to write something and post here. The first one will be posted here in a couple of hours, so stay tuned……

What kind of personality predisposes one to start blogging?

That is an interesting question, an answer to which was attempted in this paper:
Who blogs? Personality predictors of blogging:

The Big Five personality inventory measures personality based on five key traits: neuroticism, extraversion, agreeableness, openness to experience, and conscientiousness [Costa, P. T., Jr., & McCrae, R. R. (1992). Normal personality assessment in clinical practice: The NEO Personality Inventory. Psychological Assessment 4, 5-13]. There is a growing body of evidence indicating that individual differences on the Big Five factors are associated with different types of Internet usage [Amichai-Hamburger, Y., & Ben-Artzi, E. (2003). Loneliness and Internet use. Computers in Human Behavior 19, 71-80; Hamburger, Y. A., & Ben-Artzi, E. (2000). Relationship between extraversion and neuroticism and the different uses of the Internet. Computers in Human Behavior 16, 441-449]. Two studies sought to extend this research to a relatively new online format for expression: blogging. Specifically, we examined whether the different Big Five traits predicted blogging. The results of two studies indicate that people who are high in openness to new experience and high in neuroticism are likely to be bloggers. Additionally, the neuroticism relationship was moderated by gender indicating that women who are high in neuroticism are more likely to be bloggers as compared to those low in neuroticism whereas there was no difference for men. These results indicate that personality factors impact the likelihood of being a blogger and have implications for understanding who blogs.

You can also read a brief summary here: Dear World: What kind of a person blogs?

Around 20 per cent of the students blogged, mostly about their personal experiences. Among female students only, those who scored highly on neuroticism (i.e. anxious, insecure characters) were more likely to blog. This is consistent with work on internet usage that also found an association with neurotic personality types, but only among women. The researchers surmised that nervous women may blog to “assuage loneliness or in an attempt to reach out and form social connections with others.”
Among both men and women, those who were more open to experience were also more likely to blog – perhaps unsurprisingly given that blogging is a relatively new phenomenon and given that this personality dimension is associated with creativity.
The researchers cautioned their findings may only be applicable to college students in America and called on future research to look at why people blog. “It is important for social scientists to continue to examine this phenomenon to fully understand its affects on psychological processes that differentiate it from other similar forms of self-expression,” they said.

You can take your own peronality test used in this study here (my results are under the fold).
Of course, as they warn, this is not a representative sample. These are very young people, mainly writing personal journals. If the sample was taken at a typical BloggerCon, where most people are 30 or older writing about technology or politics, they would probably get different results. If they polled academic bloggers, including science bloggers, they would probably find something else again. But it’s a good start with interesting results.

Continue reading

RSS Feed aggregator about Open Access

Tell Vedran what else should be included in the RSS Feed aggregator about Open Access….

Buy This Book. Today.

I did already.
Female Science Professor (the Grand Dame of science/academic blogging) has just published a blook – a collection of her best blog posts.
You can and should buy “Academeology” on Lulu.com and later nominate it for the Blooker Prize.
And while you are shopping at Lulu.com, do I really need to remind you that this and this are still available there?

Four years!

How much is four blog years in dog years? Half a century?
After about a year of posting comments elsewhere, I started my first blog and my first post on August 18th, 2004. Seems like a lifetime ago….

The best of ABATC this summer so far

For those just coming back from their summer vacations, too busy to dig among hundreds of brief posts, here is a list of the posts that I myself consider to be my best in July and August 2008 (and perhaps SuperReaders can pick a few more of these – only 2-3 of those have been picked so far):
July:
Darwinist
Scientists are Excellent Communicators (‘Sizzle’ follow-up)
The Giant’s Shoulders #1
Running the green light….
Crackpottery
Blog Carnivals – what is in it for you?
Are Science Movies Useful?
Berry Go Round #7
When religion goes berserk!
Crayfish, warming up for a fight!
The importance of stupidity in scientific research
August so far:
What I try to do when I travel abroad across several time zones
Well versed in science
Importance of History of Science (for scientists and others)
Paperless Office? Bwahahahaha!
Science vs. Britney Spears
Domestication – it’s a matter of time (always is for me, that’s my ‘hammer’ for all nails)
Next thing, they outlaw cooking at home: it’s chemistry, after all….
Green Sahara Cemeteries
The Horse Exhibit at the AMNH
Praxis #1
Rage 2.0
Quail And I

Aggregator of RSS Feeds about endocrinology

And here is tireless Vedran again: Aggregator of RSS Feeds about endocrinology

A new science blogging network – in Portuguese

La Blog Atorios is a new Brazilian science blog network (somewhat modeled after Seed scienceblogs.com):

Lablogatorios will start with 15 blogs (some more to come) with topics that range from Earth Sciences to Psychology. Our aim is to use blogs to boost scientific communication with the public in the portuguese language.

So, if you read Portuguese, go over there and start reading and commenting!

Sciblog2008

The London Science Blogging Conference now has a Facebook page for discussions. Perhaps they will also have a FriendFeed room, like the BioBarCamp folks did – it was fascinating following the meeting from afar there these two days.
In the meantime, we had a secret meeting about, well, providing some neat surprises for you for the ScienceOnline’09 meeting (a.k.a., the Third Science Blogging Conference), bigger and better than ever – the website and wiki will be up in about ten days or so, watch this space for updates….

Online campaigning – corporate style

It’s not just McCain who does not understand the Internet, it’s his operatives as well:

Spread John McCain’s official talking points around the Web — and you could win valuable prizes!
That, in essence, is the McCain campaign’s pitch to supporters to join its new online effort, one that combines the features of “AstroTurf” campaigning with the sort of customer-loyalty programs offered by airlines, hotel chains, restaurants and the occasional daily newspaper.
On McCain’s Web site, visitors are invited to “Spread the Word” about the presumptive Republican nominee by sending campaign-supplied comments to blogs and Web sites under the visitor’s screen name. The site offers sample comments (“John McCain has a comprehensive economic plan . . .”) and a list of dozens of suggested destinations, conveniently broken down into “conservative,” “liberal,” “moderate” and “other” categories. Just cut and paste. ……

It’s not working, as even rightwing bloggers are, well, bloggers, and understand how the online culture really works.

The myth of the creative class

Jeff Jarvis – The myth of the creative class:

Internet curmudgeons argue that Google et al are bringing society to ruin precisely because they rob the creative class of its financial support and exclusivity: its pedestal. But internet triumphalists, like me, argue that the internet opens up creativity past one-size-fits-all mass measurements and priestly definitions and lets us not only find what we like but find people who like what we do. The internet kills the mass, once and for all. With it comes the death of mass economics and mass media, but I don’t lament that, not for a moment.
The curmudgeons also argue that this level playing field is flooded with crap: a loss of taste and discrimination. I’ll argue just the opposite: Only the playing field is flat and to stand out one must now do so on merit – as defined by the public rather than the priests – which will be rewarded with links and attention. This is our link economy, our culture of links. It is a meritocracy, only now there are many definitions of merit and each must be earned.
————–snip————-
I’ve long disagreed with those who say that copyright kills creativity, for I do believe that there is no scarcity of inspiration. But I now understand their position better. I also have learned that when creations are restricted it is the creator who suffers more because his creation won’t find its full and true public, its spark finds no kindling, and the fire dies. The creative class, copyright, mass media, and curmudgeonly critics stop what should be a continuing process of creation; like reverse alchemists, they turn abundance into scarcity, gold into lead.

Timeline of Internet Greatest Hits (no, these are not memes)

You can see it better, as well as add more hits (wiki-style) here. And internet memes are questionnaires that people tag each other to do. These are fads or hits, not memes.

Aggregated posts from the best (medical) educational blogs

Vedran is on the roll! Here is the aggregator for medical education blogs.

BioBarCamp is in session!

You can follow BioBarCamp virtually on FriendFeed and livecast!

Pediatrics Feed Aggregator

Vedran has done it again:
Pediatrics Feed Aggregator

2008 Black Weblog Awards Nominations are Open

banner_468x60.jpg
The website is up, read the rules carefully, check out the categories, think deeply, collect all the needed URLs and start nominating. But first, why don’t you drop those URLs in the comments here as well, so we can all discover bloggers we may not know about as well?
For the LGBT category, there is nobody who can beat Pam.
But for the “Best Science/Technology Blog” category, you know there will be techies there galore. Can we nominate, promote and vote for a science blogger?
How about my SciBling Karen Ventii?
Or Samia?
Or Clifford?
Or The Urban Scientist?
Who am I missing?
Perhaps if we pick one of them and nominate/vote like crazy we can get a science blogger to win over various techies?

Oncology Blog Aggregator

I heard that this is how it happened: when I went to Belgrade and talked about OA at the med school at University of Belgrade, I mentioned that Vedran is the local Web guru for them if they need anything. Someone from the Oncology hospital was there and later she contacted Vedran and asked him to make a blog aggregator that pulls together what people are writing about cancer. So, he did it – the Oncology Blog Aggregator is now live. If you know of good cancer blogs that should be included in the aggregator, let me know in the comments.

Medblogging

When writing about blogs, the Corporate Media does not always make total fools of themselves. For instance, this article on medblogging is quite even-handed and good.

SciBling Meet-the-Readers: change of location

Due to weather prognosis and expectation of a large crowd, the Meet The SciBling event will have to change location:

….we’ve decided to change the location of Saturday’s Reader Meetup. The new spot will be at a bar on the west side called Social. (It’s about 20 blocks south of the AMNH)….
2pm-4pm on Saturday, August 9
Social

795 8th Ave (close to 48th St.)
New York, NY 10019

New scienceblogs aggregator

Vedran Vucic has put together a new aggregator that uses some of the RSS feeds from scienceblogs.com. Check it out here. It is mainly going to be shown to researchers and interested folks in Serbia, but of course everyone in the world can access it and use it.

Online publishing and networking tools for kids and their teachers

Classroom 2.0:

…the social networking site for those interested in Web 2.0 and collaborative technologies in education.

NoodleTools: Basic Language Literacy:

Online Opportunities for Young Writers – Publications Which Accept Student Submissions

ScienceBlogs Reader Survey

See those yellow banners around the site today? Click on one of them, or click here and do a quick survey – we are trying to make this a better place for all of you and need to know what you think and what you want.
And if you participate you may even win something, e.g., an iPhone 3G, a MacBook Air or a 40GB Apple TV!

The Web about the Web

CNN creates blogging policy, encourages employees to engage in sockpuppetry:

Chez Pazienza, a former CNN producer who was fired six months ago for having a personal blog, obtained a copy of the new blogging policy that his former employer sent out to all staff (I’ve also copy and pasted it below). While it allows employees to blog, they have to get it approved by a supervisor and it bars them from mentioning anything that CNN would cover — in other words, it keeps them from talking about just about anything but their own belly lint. And even that would be ruled out if we all found out tomorrow that a new form of AIDS is spread through belly lint.
What especially caught my eye was the rules for commenting on other websites or chat rooms:

The 10 Commandments of the Social Web:

It’s clear that the social web has become increasingly complex and with so many places to communicate it is frequently challenging to figure out where the best place to go and talk is. This blog and others are all striving to cover the numerous tools available to you to express yourself to those that you know and those that you’ll never meet or speak to.

Live Webcams: Hospitals and Labs:

Would you like to watch live what’s happening at a hospital or in a lab? Here are some options:

Also Baruch Marine Lab Web Cam and University of South Carolina Roach Camera.

30Threads.com

I got a million and a half invitations to the Big Blogger Bash in Raleigh the other day, but unfortunately I could not make it.
At the bash, Ginny Skalski and Wayne Sutton unveiled their brand new project – a website called 30Threads, which will cover all sorts of locally interesting stories and engage the local community. It certainly already has interesting stories and an interesting and novel layout. Looks like the media of the 21st century should look like (especially after all but hyper-local newspapers die out or completely move online).
I bookmarked it and will keep an eye – it looks very cool, but then, I know Ginny and Wayne are cool people so I am not in the least bit surprised 😉

Welcome the newest SciBling!

Go say Hello to Matt Springer at Built on Facts, the latest addition to The Borg!

Web 2.0, Science 2.0, OA, etc.

There is a new study out there – Open access publishing, article downloads, and citations: randomised controlled trial – that some people liked, but Peter Suber and Stephan Harnad describe why the study is flawed (read Harnad’s entire post for more):

To show that the OA advantage is an artefact of self-selection bias (or any other factor), you first have to produce the OA advantage and then show that it is eliminated by eliminating self-selection bias (or any other artefact).
This is not what Davis et al did. They simply showed that they could detect no OA advantage one year after publication in their sample. This is not surprising, since most other studies don’t detect an OA advantage one year after publication either. It is too early.
To draw any conclusions at all from such a 1-year study, the authors would have had to do a control condition, in which they managed to find a sufficient number of self-selected self-archived OA articles (from the same journals, for the same year) that do show the OA advantage, whereas their randomized OA articles do not. In the absence of that control condition, the finding that no OA advantage is detected in the first year for this particular sample of journals and articles is completely uninformative.
The authors did find a download advantage within the first year, as other studies have found. This early download advantage for OA articles has also been found to be correlated with a citation advantage 18 months or more later. The authors try to argue that this correlation would not hold in their case, but they give no evidence (because they hurried to publish their study, originally intended to run four years, three years too early.)

How to do research – special free sample:

Key to doing research is having a discovery network in place to do the grunt work of navigating through the data smog for you. But even more importantly, constructing a discovery network is central to your professional formation, because it makes you ask yourself who you are and what sort of things you want to discover.
In many ways, your discovery network already discovers material out there and then evaluates it for you automatically, filtering through only the material you need. But the machine doesn’t know what you are working on at the moment, and of course is not as finally discriminating as your brain. So you need to filter the stuff your filters have been sending you. This is where the art comes in.

The confusion over data rights:

There was a time when I had the naive opinion that academics were all about the open dissemination of science, especially the sharing of basic scientific data. Alas, it turns out that for some the public domain is not exactly that. I suppose that this is a minority opinion, but it is clear that the confusion about scientific data and ownership needs to be resolved and fast. It should be obvious, but it isn’t and even those of us who should know better get confused. In the above case, if there was a paper where the data source had not been cited properly is understandable, but downloading and using sequences; Yowza!!!
There is a distinction between data and content/information. Too many people have trouble making the distinction and as a result there is confusion the ownership rights around the two. Anyway, this issue isn’t going anywhere soon it seems.

Virtual world interoperability:

As the number and variety of virtual worlds increases, so will the demand for interoperability. This will include not only teleporting between worlds, but also interworld communications, interworld asset portability, interworld currency exchange and many other issues. The technological aspects are an important part of this, and the public beta is an important step in the right direction. However, there are many social and business aspects that will also need to be addressed, and these may be even more difficult than the technological ones.

So open it hurts:

Web 2.0 visionaries Tara Hunt and Chris Messina blogged and twittered about their romance to all of geekdom as if it were one of their utopian open-source projects. Sharing their breakup has been a lot harder.

Five Life-Changing Mistakes and How I Moved On:

I’m out meeting with the press right now to promote SmartNow.com and I’m getting quite a reaction. Not to the business, but to me. You see, it’s been awhile since I met with them, at least eight years. Many of the people in the press are same ones I met all those years ago. Many I don’t know. No matter if they knew me before or not, they all ask the same question: “What mistakes have you made and what have you learned from them?” And this isn’t a normal “check-the-box” reporter question. This is a loaded question with heavy reference to my past, some would say my infamous past.
First some background, I was the CEO of Pets.com. In case you haven’t heard of it, Pets.com and its mascot, the Sock Puppet, became the symbol for the dotcom bubble and its subsequent bust. Some have even charged me personally with bringing down the U.S. economy. Pets’ short period of success was fueled by positive press about the company and myself. Pets received even more press when it failed.
As the public CEO, I failed, and it was a very public failure. In fact, I was labeled one of the biggest failures ever. How bad was it? I had people laugh in my face when I introduced myself for years after the company closed. It happened as recently as a year ago. A couple of people asked me what it felt like to be one of the best-known failures in the U.S. Most just walked away from me. One woman told me to my face that I was a loser. I could go on and on, but you get the point: I became a symbol for something greater than myself, and we aren’t talking puppet envy here.
What most people don’t know is that the very same week that Pets.com failed, my marriage of seven years failed as well. Actually, it had been failing for a long time. It became officially over that week. My husband decided to call it quits the day before I announced to the employees and the public markets that I was shutting down Pets. It was a really bad week…….

A Whole Lotta Thoughts On Blog Network Success (bonus tips included):

First, though, I want to enumerate some reasons why running a blog network, blog ad network or a blog “alliance” is harder than folk realize. But hopefully some of this post can help solve some of the stumbling blocks, as well as highlight the issues so folks go into these projects with eyes wide open.

Cuil: Why I’m trying to get off of the PR bandwagon…:

Journalists thrive off of conflict. That’s why we want a competitor to Google so badly and why we play up every startup that comes along that even attempts to compete with Google.
The problem is that competiting head on with Google is not something that a startup can do.

Meet The Parents SciBlings

Do you want to spend two hours chatting with Grrrl, Janet, Professor Steve Steve (or two or three of them), me and many more SciBlings and readers?
If yes, this is where you should go:

We’ll be meeting at 2:00 pm on Saturday, August 9, at the Arthur Ross Terrace at the American Museum of Natural History in Central Park. Once there, please head to the cafe tables and chairs set by the trees on the upper terrace, facing the Rose Center. The terrace is accessible from the Theodore Roosevelt Park at 81st Street and Columbus Avenue.
This is an outdoor location with tables and shade, which we thought was best for the large numbers we’re expecting. After we’re all assembled in this spot, if smaller groups are interested in grabbing a coffee or sitting in air conditioning, then we’d be happy to point them to one of several nice cafes nearby.
venue will change due to the number of readers who indicated they will come, as well as 30% chance of rain – stay tuned for the new venue announcement!
Please pass this on to anyone who might be interested. We’re all very excited to interact with readers in RealSpace!

You can also announce your intentions and get more info on the FB event page.

What is missing here?

On this list (which is now full and closed)?
Well, my name. Darn!

The Web: how we use it

Best time to appreciate Open Access? When you’re really sick and want to learn more about what you have.:

* Complete OA still a long way off. One thing I re-learned during this was that it is incredibly frustrating to see how much of the biomedical literature is still not freely available online. Shame on Elsevier and all the others who are still hoarding this important information.
* Thanks to those providing OA. Related to the above issue, I came to appreciate was the societies and publishers have decided to go the OA route. I spent a lot of time reading material from ASM, BMC, PLoS, Hindawi, and a few others. And I am grateful to these groups.
* Google rocks for science searching. Cuil, not so much. If you need to find something about some scientific concept or issue, Google really does a great job. While I was out, Cuil was announced as a possible new competitor for Google in searching. From my experience, Cuil is really really lame for science searches. I like their presentation in a magazine style. But the search results were not so good.

Free Microsoft tools for scholarly communication:

* This is for real. Don’t mistake the Microsoft research division, which doesn’t sell anything, for the Microsoft product divisions. Tony Hey believes in open access and open data, and is putting Microsoft resources behind them. For background, see Richard Poynder’s interview with Tony Hey (December 2006), and my previous post on the Microsoft repository platform (March 2008).
* The new tools are free of charge. The announcement doesn’t say they will ever be open source, but Microsoft encourages open-source tools in the open chemistry projects it funds. So it’s possible.
* The authoring add-in should help publishers (including OA publishers) reduce costs, at least if they want to provide XML, and it should help them decide to use XML. The repository platform and e-journal service are even more direct contributions to OA. I don’t know much about the e-journal service, apart from a swarm of great ideas raised at a Microsoft brainstorming meeting in November 2005. And I don’t know much about the repository platform except that it will be interoperable, play well with Microsoft tools like SQL Server Express, use semantic processing to create arbitrary relationships between resources, and serve as a back end compatible with DSpace and EPrints front ends. I look forward to user reviews.

Nature Publishing Group launches Manuscript Deposition Service:

Nature Publishing Group (NPG) today launches the first phase of its Manuscript Deposition Service. The free service will help authors fulfil funder and institutional mandates for public access.
From today, the NPG Manuscript Deposition Service will be available to authors publishing original research articles in Nature and the Nature research journals. NPG expects to be able to announce the availability of the service for many of its society and academic journals, and for the clinical research section of Nature Clinical Practice Cardiovascular Medicine, shortly.

Who Writes Wikipedia?:

“When you put it all together, the story become clear: an outsider makes one edit to add a chunk of information, then insiders make several edits tweaking and reformatting it. In addition, insiders rack up thousands of edits doing things like changing the name of a category across the entire site — the kind of thing only insiders deeply care about. As a result, insiders account for the vast majority of the edits. But it’s the outsiders who provide nearly all of the content.”

On information overload:

Over the last few months I have witnessed a steadily growing stream of writers declaring news feed, blogging and/or social media bankruptcy, citing such things as information overload, hobbies becoming ‘work’ or even the fact that so many people on the internet can be jerks about such small things.

Gene Wikiality:

Still, for the gene wiki to become what the researchers envision, they’ll need informed people — lots of them — who are willing to log in during a coffee break or three, check out an entry or two, and make necessary edits and additions. They’ve built it; it’s time to see if the scientific community will come.

The passionates vs. the non passionates (definitely also check the discussion on FriendFeed):

“….Some things that I’ve noticed about late adopters (er, non-passionates) and how they use computers they really are much different than the passionates who I usually hang out with. They really don’t care about 99% of the things I care about. FriendFeed? Yeah, right, they haven’t even heard of it, and if I try telling them about it, they say “why would I do that?” See, most people just want to work their 9 to 5 jobs, go home, pop open a beer, sit on the couch, watch some movies, play with their kids, etc.
Stay up all night talking to strangers? No way, no how. Most of the non-passionates I know are just barely trying out Facebook (90 million users). Twitter? Yeah, right. (Two million).
Heck, these people don’t even know how to use an address bar in a browser. Think I’m kidding? I’ve watched how normal people (er, non-passionates) use computers. You go to a search box, and type “Yahoo” even if you are already on Yahoo. Think I’m kidding? Ask the engineers over at Yahoo how many times a day people search for Yahoo on Yahoo’s own search engine. Same over at Google.
When I travel, I look at what people use — thanks to being on planes a lot in the past few months I get to see what people use. Most are using technology I used back in 2000. That’s eight years ago, or 100 in Internet years. I look at them the same way you’d look at them if they told you they just started using a telephone.
The exception? Blackberry. But show me a Blackberry user that knows how to look up Google Maps or uses the Web more than once a week? I’ll show you a passionate. I’ve talked to hundreds of people in airports and I haven’t found a Web-using Blackberry user yet that’s not a passionate (meaning, someone who is really passionate about technology).
And let’s not forget the fact that of the six to seven billion people in the world only about a billion even have a computer in the first place. So, that means that five to six billion people really don’t care about Windows or OSX or all that.
We can be so arrogant sometimes to forget that there are more people who are NOT like us, than who are like us in the technology world……”

Passion, Early Adopters and the Mainstream:

Sometimes I wonder whether people have forgotten why we do what we do. Most people who blog do it because they have a passion for what they are writing about. Many people creating these fancy Web 2.0 sites are doing it because there is some passion for what they are doing. Even “how to be successful” guides highlight that you should have passion for your work if you want to be successful. Given this need for passion, I find it interesting that people are trying to focus on the mainstream users. Granted, the big reason for this is massive traffic and huge revenue, but how do you get there? You have to start somewhere, right?

Passionates:

The activity is the thing to focus on, not the technology. Technology enables the activity, and people will get excited about the technology if they’re excited about the activity first and the benefits of the technology has been explained to them. But you don’t make passionate photographers by showing them lenses, you make passionate photographers by showing them pictures that rip your heart out.
That said, I understand the point Robert is making. There are some people (early adopters) who will try out anything simply because it’s new and interesting. But those are technology early adopters…a very small population of people who get a large amount of attention because of their predilection to try new things. A much larger population (although much more fractured) are those people who are already passionate about some activity or other, and can become passionate about new technology as it relates to that activity, but they just haven’t been introduced properly.

Correct. I am a technological Luddite. I barely use HTML and would not recognize any kind of code if it hit me in the face. I have had a cell-phone (not an iPhone!) for a year now and I barely use it. I never got a Blackberry. My iPod-Touch is still in its box two months after I got it. I do not check e-mail or Web on anything smaller than a laptop. I do not regularly read tech blogs (except an occasional post about social aspects of the Web). I am not interested in the newest shiny thing. Technology itself does not excite me, it is what I can do with it. I usually wait for the Darwinian process to work out its magic first, then adopt the winners, once forced into it because everyone else is using it and expects me to use it, too.
I use Dopplr to meet people who travel (or when I travel). I have a profile on LinkedIn only because everyone else does – I never check it. I have logins elsewhere mainly so I can check where the links are coming from to my blog (e.g, Digg, Stumbleupon, Flickr….). I never signed up for Twitter as it does not do anything I need it to do. And that is it.
But I was an early adopter of blogs, because my blog let me shout and be heard and get feedback. I was an early adopter of Facebook, when it got started some years ago, but I have tested and deleted most of the apps there – I use it for only a couple of things (and those come via e-mail notifications) so I do not spend time on it. I am an early adopter of FriendFeed because it is a great source of good links, filtered by people who are interested in the same things I am. I am an early adopter of Open Access evangelism because I lost my library access privileges at the University and could not get the papers to blog about. If I were still doing science, I’d be using CiteULike probably, but not most of the myriads of other “science social networks” that are springing up seemingly every day. We all have our own passions and our own needs.

PZ is all over the place today!

PZ just had a book review published in Nature:

Science and evolution have an advocate in Kenneth Miller, one of North America’s eminent knights-errant, a scientist who is active in defending evolutionary theory in the conflict between evolution and creationism. He has been at the centre of many recent debates about science education, most prominently testifying against intelligent design creationism in Pennsylvania’s Dover trial, which decided that intelligent design was a religious concept that should not be taught in public schools. He is also a popular speaker, offering the public a grass-roots defence of good science education. Miller’s new book Only a Theory is a tour of creationist misconceptions about evolution, such as the one referred to in the book’s subtitle — a creationist predicted an inevitable victory in the Dover trial because evolution is “only a theory”. The book is also a celebration of the power of evolutionary theory to explain our existence.

Also, as a part of a Forbes Magazine’s special report on commuting, PZ had an article published today – Do Animals Commute?

Whether an animal commutes or not is less a function of the work they must do than of whether they actually have something that might be called a home, a haven, a shelter. We don’t just invest ourselves full-time in the job–if we did, we might as well spare ourselves the commute and live in the office–but instead make the effort to set up a place of our own, a safe spot where we can relax, raise a family, or pursue activities that aren’t directly related to simply feeding ourselves.
And for that, we and other animals will make the sacrifice of sinking time and energy into shuttling between a place of profit and a place of refuge. If you want to know if a particular animal engages in anything like a commute, just ask if it has anything you would call a home.

Lively discussion of commuting, of course, follows in the comments. I wish more people were commenting on animals’ movements, but OK, people like to talk about themselves and other people-worries.

The Web’s navel-gazing

We knew the web was big…
The Blogosphere Needs to Mature – But How?
Tracking Facebook’s 2008 International Growth By Country
The Web’s Dirty Little Secret
The Future of the Desktop

Obligatory Readings of the Day: Ecology of Progressive Blogosphere

Progressive Blogosphere 2.0 – Why Social Justice Matters – Preview of Coming Attractions
Whither Progressive Blogosphere 2.0?
Becoming blog ecologists: PB2.0, consilience, and the Third Culture

Who should I bring with me….

…to the SciBling Meetup? Professsor Steve Steve, Darwin, neither or both?
July%2008%20002.jpg

Carnival of Science/Academia/Publishing?

Martin saw this comment of mine and sprung into action: Name the new ‘Carnival of Scientific Life’!

The two big questions are what to call it, and how often to host it, so I’d like your input in the comments below please. I’ll be making the final decision on August 1st.
What would be a good name for the carnival? (Ideally something without “carnival” in the title.)
Should it be held monthly, or at some other frequency?
The carnival is intended to cover all aspects of life as a scientist, whether it’s the lifestyle, career progress, doing a Ph.D., getting funding, climbing the slippery pole, academic life as a minority, working with colleagues and students, dealing with the peer-review process, publishing, grants, science 2.0, amusing anecdotes, conference experiences, philosophical musings, public engagement, or even historical articles about what life was like in the good (or bad) old days.
In other words, anything related to the experience of living the scientific life. Not blogging about research, but blogging about everything that goes with being a researcher. A sort of “meta-science” carnival if you like.
I’ll be putting together a hosting schedule here in the coming days. If you’re interested, let me know at editor@layscience.net.

This is how he describes it: About the Carnival of Academic Life

The carnival is intended to cover all aspects of life as an academic, whether it’s the lifestyle, career progress, doing a Ph.D., getting funding, climbing the slippery pole, academic life as a minority, working with colleagues and students, dealing with the peer-review process, publishing, grants, science 2.0, amusing anecdotes, conference experiences, philosophical musings, public engagement, or even historical articles about what life was like in the good (or bad) old days.

On the same day, there was a thread on ‘Plausible Accuracy’: Open Science blog carnival – The interest seems to be there, so what about the details?, where I left the following comments:

I’ve seen carnivals come and go, and at this point I do not think there is enough people out there to sustain a carnival on such a narrow topic as OA alone. I would rather have a carnival on all things meta-science, with an OA section in it.
———-
This also means that people who write/read about other aspects of life in science will get to read the OA stuff (people always check out who else is on the carnival they are in, and also link to the carnival), many for the first time, and get introduced to the idea which they can spread to others. Makes the topic less insular when it rubs shoulders with others who write about science but never gave a thought to the business of publishing before. A way to bring in more people to the cause.

I would think that something like this would be OK. Not “I am bummed because my mini-prep did not work today” kinds of posts, but analytic posts about the way science works, the way academia is organized, the internal and external politics of science, discrimination, funding, promotion, careers, the business of publishing, the Science 2.0 and science blogging issues, etc., but with a special emphasis on the way the Web is changing science practice in all of its aspects.
What do you think?

MedBlogging under scrutiny

The Health Blogosphere: What It Means for Policy Debates and Journalism:

The Kaiser Family Foundation is sponsoring a discussion about the growing influence of blogs on health news and policy debates. Only in the past few years has the blogosphere become mainstream. In the health policy arena, we now see policymakers, journalists, researchers and interest groups utilizing this new media tool to deliver information to their audiences. The briefing will highlight how the traditional health policy world has embraced blogging and will feature a keynote address by U.S. Department of Health and Human Services Secretary Michael Leavitt, the first cabinet officer to author an official blog, followed by a moderated discussion with a variety of health policy bloggers and a media analyst.
Questions to be explored with the panelists include: Why do individuals and organizations blog? How does blogging impact the broader work of an organization? Are there different standards used when blogging versus other writing? Have blogs impacted the news business significantly? What kind of influence are blogs having on political and policy debates?

Unfortunately, the panel is heavily skewed toward Rightwing, Bush-loving, business-only types, with the brave exception of Ezra Klein.
Annie has a lot more information worth checking out. But you should tune in tomorrow at 1pm Eastern time and pitch in. Let’s reframe their discussion so it actually gets honest.

Lee Siegel – who let him into a media room again?

Lee Siegel was on NPR’s On The Media the other day, defending his sockpuppetry and painting all bloggers as unwashed hordes of fascists. Boo hoo.
I listened to the podcast and it was too short to be of much substance. The interviewer has no idea how big of an offense sockpuppetry is, and Siegel demonstrated that, apart from comments on his own blog, he has never really taken a look at the blogosphere as a whole. If the comments on his posts are all he knows, he really knows nothing about blogs. The quip about editors who wink about nobody reading comments is just another proof how ignorant they are of the New Media and what it does. The idea that journalists losing jobs will now turn against bloggers instead of “pandering” to them is just ridiculous – laid off journalists tend to become bloggers and harbor ill feelings towards giant media houses that laid them off in pursuit of profits and reduction of news value.
Siegel has been covered by SciBlings before. Also see Ed Cone and Josh Marshall.
Possibly related:
Old vs. New Media Redux
Those on the Losing End are always the Loudest
Another hit-job on blogs
Michael Skube: just another guy with a blog and an Exhibit A for why bloggers are mad at Corporate Media
Are we Press? Part Deux