Category Archives: Evolution

Postscript to Pittendrigh’s Pet Project – Phototaxis, Photoperiodism and Precise Projectile Parabolas of Pilobolus on Pasture Poop

We have recently covered interesting reproductive adaptations in mammals, birds, insects, flatworms, plants and protists. For the time being (until I lose inspiration) I’ll try to leave cephalopod sex to the experts and the pretty flower sex to the chimp crew.
In the meantime, I want to cover another Kingdom – the mysterious world of Fungi. And what follows is not just a cute example of a wonderfully evolved reproductive strategy, and not just a way to couple together my two passions – clocks and sex – but also (at the very end), an opportunity to post some of my own hypotheses online.

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The race is to the smart…and the fleet and the well camouflaged

Predators Prefer To Hunt Small-brained Prey

Predators such as leopards and chimpanzees consistently target smaller-brained prey less capable of escape, research at the University of Liverpool has shown.They avoid more intelligent prey such as monkeys which have exceptionally large brains and are more capable of escaping attacks.
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Animals with small brains lack behavioural flexibility and are probably less capable of developing new strategies to escape predators, compared with larger-brained species.
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“Some animals’ ability to avoid being eaten by predators may be a contributing factor to the evolution of large brains across some species, adding to conventional theories which argue this is important for developing social relationships and using tools.”

When we talk about co-evolution, we usually think of pairs of species: a flower and a bee, a lion and a zebra, a ground squirrel and a rattlesnake. But in reality, each species is involved in multiple co-evolutionary arms-races with a number of other species simultaneously. You evolve either general adapatations to survival that give you an average success rate against all other species, or you evolve highly specialized adaptations to beat one particular species (which is most abundant, most tasty, most dangerous, etc, where you live) and ignore the others.
So, some of the prey species got too smart, others too fast, others too stealthy for these predators to bother with any more – they lost those co-evolutionary races and are now focusing on other species that are still sufficiently dumb/slow/obvious in their environment even if they do not taste as well or cannot be found in such great numbers or ar in other ways an inconveneince to the predator – but they are the only ones around who are still an easy catch.
So, just like we stopped thinking about food chains and started thinking about food webs, we should stop thinking only about co-evolutionary pairs and start thinking about co-evolutionary webs.

Books: “Biased Embryos and Evolution” by Wallace Arthur

Books: 'Biased Embryos and Evolution' by Wallace Arthur
This is a post from June 28, 2005, reviewing one of my favourite new evolution books:

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How many things…

..are wrong with this article?

Friday Weird Sex Blogging – Losing Your Head For Love

As always, animal porn is under the fold:

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Hot boiled wine in the middle of the winter is tasty….

The latest AskTheScienceBlogger question is:

“I heard that within 15 years, global warming will have made Napa County too hot to grow good wine grapes. Is that true? What other changes are we going to see during our lifetimes because of global warming?…”

Answer under the fold….

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Hot Peppers – Why Are They Hot?

Blogging on Peer-Reviewed Research

Some plants do not want to get eaten. They may grow in places difficult to approach, they may look unappetizing, or they may evolve vile smells. Some have a fuzzy, hairy or sticky surface, others evolve thorns. Animals need to eat those plants to survive and plants need not be eaten by animals to survive, so a co-evolutionary arms-race leads to ever more bizzare adaptations by plants to deter the animals and ever more ingenious adaptations by animals to get around the deterrents.
One of the most efficient ways for a plant to deter a herbivore is to divert one of its existing biochemical pathways to synthetise a novel chemical – something that will give the plant bad taste, induce vomiting or even pain or may be toxic enough to kill the animal.
But there are other kinds of co-evolution between plants and herbivores. Some plants need to have a part eaten – usually the seed – so they can propagate themselves. So, they evolved fruits. The seeds are enveloped in meaty, juicy, tasty packages of pure energy. Those fruits often evolve a sweet smell that can be detected from a distance. And the fruits are often advertised with bright colors – red, orange, yellow, green or purple: “Here I am! Here I am! Please eat me!”
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So, the hot peppers are a real evolutionary conundrum. On one hand, they are boldly colored and sweet-smelling fruits – obvious sign of advertising to herbivores. On the other hand, once bitten into, they are far too hot and spicy to be a pleasant experience to the animal. So, what gives?
Back in 1960s, Dan Johnson had an interesting proposal he dubbed “directed deterrence” which suggested that some plants may make choices as to exactly which herbivores to attract and which to deter. Hot peppers are prime candidates for such a phenomenon. What is hot in peppers is capsaicin, a chemical that elicits a sensation of pain when it bind the vanilloid receptors in the nerve endings (usually inside the mouth) of the trigeminal nerve. As it happens, all mammals have capsaicin receptors, but it was found, relatively recently, that birds do not.
To test that hypothesis, Josh Tewksbury used two variants of hot peppers – one very hot (Capsicum annuum) and the other with a mutation that made it not hot at all (Capsicum chacoense) – and offered both as meals to rodents (packrats and cactus mice) and to birds (curve-billed thrashers).
All species ate the sweet kind about equally. When Josh offered them identically prepared meals made out of the hot stuff, the two rodents refused to eat it while the birds happily munched on it.
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The study appeared in 2001 in Nature (pdf) and I saw Josh give a talk about it at that time as he was joining our department to postdoc with Dr.Nick Haddad. While my lab-buddy Chris and I gave him a lot of grief in the Q&A session on his lenient criteria of what constitutes a “hungry animal” (he needed them to be hungry for the feeding tests), still the main conclusions of the study are OK.
More importantly, it really happens in nature. Mammals avoid hot peppers out in Arizona where Josh studied them (and made videos of their behavior), but the birds gorged on peppers. When he analyzed the droppings of rodents and birds fed peppers, he saw that seeds that passed through avian intestinal tracts were fully fertile, while seeds eaten by mammals were chewed, crushed, broken or semi-digested and not fertile at all.
Additionally, the thrashers tend to spend a lot of time on fruiting shrubs of different kinds. While there, they poop. The hot pepper seeds in the droppings germinate right there and this is an ideal shady spot for them to grow.
What a great example of (co)evolutionary adaptations. Next time on this blog, the second Big Question: Why do we like to eat hot peppers?
Related: Hot Peppers

More On Female Orgasm

More On Female OrgasmEvolution of Female Orgasm is one of the ever-recurring themes on blogs. This post was first written on June 13, 2005. There were several follow-ups as well, e.g.,
here, here and here. Under the fold.

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ClockTutorial #3b – Whence Clocks?

ClockTutorial #3b - Whence Clocks?This post about the origin, evolution and adaptive fucntion of biological clocks originated as a paper for a class, in 1999 I believe. I reprinted it here in December 2004, as a third part of a four-part post. Later, I reposted it here.

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Obligatory Readings of the Day – Tetrapod Zoology

Do you read Darren Naish’s blog Tetrapod Zoology? If not, you should start now. Just check out some of the most recent posts, for example this two-parter on sea snakes: ‘A miniature plesiosaur without flippers’: surreal morphologies and surprising behaviours in sea snakes and Sea kraits: radical intraspecific diversity, reproductive isolation, and site fidelity.
Or, this two-part post about the importance of the shape of the birds’ bills: The war on parasites: a pigeon’s eye view and The war on parasites: an oviraptorosaur’s eye view.
Or an amazing four-part story about Angloposeidon, a dinosaur from the Isle Of Wight: ‘Angloposeidon’, the unreported story, part I, ‘Angloposeidon’, the unreported story, part II, ‘Angloposeidon’, the unreported story, part III and ‘Angloposeidon’, the unreported story, part IV.
Enjoy and have a good weekend!

ClockTutorial #3a – Clock Evolution

ClockTutorial #3a - Clock EvolutionThis post, originally published on January 16, 2005, was modified from one of my written prelims questions from early 2000.

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What color were the mammoths?

IceAge2-1.jpg
Archy has the answer.

Books: “Evolution’s Rainbow” by Joan Roughgarden

Books: 'Evolution's Rainbow' by Joan RoughgardenI wrote this book review back on February 18, 2006. Under the fold…

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It’s hard teaching evolution in public schools in some places

Evolution’s Lonely Battle in a Georgia Classroom:

OCCASIONALLY, an educational battle will dominate national headlines. More commonly, the battling goes on locally, behind closed doors, handled so discreetly that even a teacher working a few classrooms away might not know. This was the case for Pat New, 62, a respected, veteran middle school science teacher, who, a year ago, quietly stood up for her right to teach evolution in this rural northern Georgia community, and prevailed.
She would not discuss the conflict while still teaching, because Ms. New wouldn’t let anything disrupt her classroom. But she has decided to retire, a year earlier than planned. “This evolution thing was a lot of stress,” she said. And a few weeks ago, on the very last day of her 29-year career, at 3:15, when Lumpkin County Middle School had emptied for the summer, and she had taken down her longest poster from Room D11A — the 15-billion-year timeline ranging from the Big Bang to the evolution of man — she recounted one teacher’s discreet battle.

She appears to be an excellent teacher, covering every unit in biology within an evolutionary context. She prevailed only because Georgia science standards explicitely endorse teaching of evolution. Her supervisors were not supportive, though, until she threatened to sue, at which point they suddenly turned 180 degrees and were all sugar and spice. She only did it when she decided to retire anyway, though.
Now imagine if the state did not have those standards, which almost happened…. Read the rest

Creationism Is Just One Symptom Of Conservative Pathology

Creationism Is Just One Symptom Of Conservative Pathology
This is one a couple of posts about Creationism, written originally on May 1st, 2005.

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Daily Rhythms in Cnidaria

Blogging on Peer-Reviewed Research

The origin and early evolution of circadian clocks are far from clear. It is now widely believed that the clocks in cyanobacteria and the clocks in Eukarya evolved independently from each other. It is also possible that some Archaea possess clock – at least they have clock genes, thought to have arived there by lateral transfer from cyanobacteria.[continued under the fold]

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Is this a spider week on scienceblogs?

Just check out these recent posts by Karmen, Afarensis, Afarensis again, PZ and Tara.

Friday Weird Sex Blogging

There is a tradition in the blogosphere of posting something light on Fridays.
Some people do the Friday Random Ten, but I do not have an iPod, and keep my computer on Mute, so I do not listen to music or can generated a random ten.
Most people post pictures of variousanimals, mostly cats, but I do not like doing what everyone else is doing. And once I’ve posted pictures of my cats (and I did, a couple of times, though never on a Friday), what’s the point of doing it again?
Some people got away from cats and pets and post pictures of cooler animals, like ants, or, well, ants. birds. Or birs on Monday. Or nudibranchs. Or cephalopods. Or plants. Or invasive species.
Some are moving away from living stuff altogether, with Friday Fractals or Organic People Chemistry or Sunday mineral blogging.
Update: Arrrrgh! How could I have forgotten
Friday Sprog Blogging and Map The Campus!
What can I do? How about something that is sure to bring in Google searchers?
Sex!
That’s it. Every Friday, I’ll try to find an example of some cool organism involved in a strange reproductive practice. Today is the first such Friday. Enjoy….

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This Day In History

Gavin de Beer died on this day in 1972. Aydin Örstan wrote the best post for the occasion (also cross-posted on Transitions)

New York City trip – Part VI: Darwin

Friday, May 26th
Afternoon
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So, about noon or so, we finally got to the American Museum of Natural History. I was pretty smart, actually… A few months ago, when we first started thinking about making this trip, I decided not to renew my subscription to Natural History Magazine, but to subscribe my wife instead. So, when we arrived at the museum, we skipped the long ticket lines and went straight to the “Members” desk, where my wife got a little discount, I got a student discount (yes, I still have a valid student ID – officially they did not kick me out yet), and the kids ar, quite obviously, still ’12 or under’, so they got discounted tickets as well. And the process was fast.[more under the fold]

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This Day In History

On June 17th, 1858 (I know, I missed by less than an hour), Charles Darwin received a letter from Alfred Russel Wallace. The letter contained the explanation of the principle of natural selection. Thus, Darwin was forced to act, and act fast. After reading both Wallace’s and his own acccount of natural selection to the Royal Society, he got down to work. Instead of a multi-tome monograph he was planning on writing (which, if nothing else due its sheer size, would not have had quite as wide readership), he quickly jotted down a slim volume which, for the Victorian era, was a surprisingly easy and captivating read – The Origin of Species. The first edition was sold out on the very first day and the book became an instant hit. The rest, as they say, is history. (Hat-tip to my friend Jim who actually remembered the date and realized the anniversary of this momentous event was today, OK last night, but teh wine was good and I got home after midnight).

Evolutionary Conversations…

A lot of interesting posts appeared over the past day or two concerning evolutionary theory, what evolution is and how it works.
It all started with Jonah Lehrer’s article in SEED Magazine on the ideas of Joan Roughgarden:The Gay Animal Kingdom to which PZ Myers responded with Evolution and homosexuality and Jonah responded with agreement: PZ vs. Roughgarden.
I responded with a post in which I linked to my old review, Books: ‘Evolution’s Rainbow’ by Joan Roughgarden, and ended with a minor quip that switched the discussion from homosexuality to the question of units of selection: Sexual Selection is not dead yet!
Razib responded with: Levels of selection: controversies no one cares about? to which Robert Skipper responded with excellent post: Apathy About the Levels of Selection.
Then I rattled Razib (again – he’s read them before…we go waaay back!) with two reposts from my old blog, each taking sideways stabs at crude genocentrism: How To Become A Biologist and Lysenko Gets A D-Minus On My Genetics Test.
This gave Razib an idea to ask for a 10-word definition of evolution: Evolution in less than 10 words – give it a shot! John Hawks was the first to respond with Evolution in less than 10 words
RPM did much better: Evolution, the Population Geneticist’s Perspective. And Robert Skipper did much, much, much better: 10 Words About Evolution. I left my own definition in the comments on both of these posts. [Update: John Wilkins offers his own interesting definition: Evolution in less than 10 words]
On a somewhat different topic, the new study of evoluiton by hybridization in butterflies was ably explained by Carl Zimmer in Darwin, Meet Frankenstein and John Wilkins in Homoploid speciation – what is it, and why does it matter?

The Webbed Feet

The Aquatic Ape theory is bunk, but Aquatic Sparrow theory just got a huge boost. There is no way I can explain the Big Evolution News Of The Day as well as Grrrlscientist did, so please go here and enjoy the amazing news of the wading/aquatic ancestors of all modern birds, with the beuatiful pictures of excuisitely well-preserved fossils from China.

Call him Doctor!

I was checking sporadically his blog throughout the day to see when the good news will get posted and, lo and behold, here it is! Reed Cartwright has successfully defended his PhD dissertation and, next month, is coming to my school for his postdoc. Go say Hello and Congratulations to Dr. Cartwright
(OK, am I going to be next?)!

Lysenko Gets A D-Minus On My Genetics Test

I wrote this post on February 27, 2005. Provocative? You decide….ClockWeb%20logo2.JPG

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Obligatory Readings of the Day

Archy on ‘belief in evolution’.
Lance Mannion about the Godless.

Sexual Selection is not dead yet!

A few months ago I reviewed Joan Roughgarden’s book “Evolutions Rainbow”. Now that SEED magazine has published an interview with her, I thought about writing about it again (or just republishing the old one), but now I see that I do not have to, because PZ Myers did a much better job at it than I could ever dream of doing, so go and read it.
The only sentence I did not like was: “There are objections that this requires group selection, which always puts an idea on shaky ground….” As someone who has studied group selection (both biological and philosophical literature) intensely over the past few years, I do not think it is on a shaky ground at all, though some people (mostly those who believe in mathematical models more than real data) may tell you so.