ClockQuotes

Even a stopped clock is right twice a day.
– Marie von Ebner-Eschenbach

Class

Online and Offline. Obligatory Readings of the Day.

My Blogroll, and the Newsfeed Question

I’ve been a little behind (as in ‘few weeks’) in adding the blogs I tagged in my Blogrolling for Today posts into the actual Blogroll but I caught up with that a few minutes ago. That Blogroll is a Monster! But, check it out anyway – at least check if your blog is there and if the link is correct. I don’t know how useful it is to anyone, but having about a thousand blogs personally chosen and listed in one place is better than browsing tens of millions of blogs that are in existence out there.
Anyway, I am looking for a new newsfeed. Having this many blogs listed is tough on any newsfeed, I understand. I gave up on Bloglines after it went over 700 feeds – I just kept checking the blogs that start with ‘A’ over and over again… Is there a newsfeed that can handle that many blogs? And it looks good, is easy to take a quick look and see what was posted over the past 24-48h (and hopefully let me set how long the posts are displayed)? In other words, I want a list of recent posts, not a list of blogs (bolded if there is something I have not seen over the past months!).
I’d like to be able to keep posts on for a while even if I clicked on them if I intend to link to them later. I also want NOT to have to click on a title in order to see it dissappear in 24-48 hours (who is going to keep deleting or clicking on thousands of posts per day!?).
Right now, I have to do everything the slow way. I check the Last 24 Hours page several times a day to see what my Sciblings have posted (no guarantee I’ll read everything, but I read a lot of those). Then, I check my Sitemeter referrals to see where the readers are coming from, as well as my Technorati and Google Blogsearch results to see who has linked lately (and on those blogs I look around to see what else is on the front page).
Then I go and visit about a dozen blogs that I check daily anyway – I just start typing the first letter or two and my browser knows where to take me.
If I still have time after that, I may go to this list of my favourite non-SB science blogs and browse there. And finally, if I am really idle, I go to my own Blogroll and click around semi-randomly to see what is new.
So, which newsfeed is the best for someone who has 1000 feeds?

Godless Postdocs?!

The new edition of What’s up postdoc? is up on Being a Scientist and a Woman
Carnival of the Godless #69 is up on The Uncredible Hallq.

Adam meets Steve (Steve) in the Garden of Eden

Professor Steve Steve, Wesley Elsberry, Tara Smith and Jason Rosenhouse [edit: Part 3 is now available] went to that funny new “museum” in Kentucky and report about it so you don’t ever have to go yourself!

Obligatory Reading of the Day – the Millennials

By Kidoakland: Abel Guillen: the Rise of the Millennials:

In my recent and direct experience, millennials are engaged, groundedly idealistic and willing to make careers that will change their nation and world over the long haul. I see this every day. Even among the youngest of this consort, the strains of progressive politics run deep and wide. That counts for something. These young Americans may have grown up with Madison Avenue and Hollywood cliches of political activism, but their own actions are no less idealistic even if they go on under the cover of less flamboyant and more conventional attire. Coordinating with likeminded allies through Facebook may have replaced “levitating the Pentagon”, but it’s a trend-of-the-times that should by no means be underestimated.

My Picks From ScienceDaily

Individual Differences In Sleep Structure Are Biologically Determined:

Sleeping pattern variability has long been attributed to differences in several non-biological factors. Now a study from the Sleep and Performance Research Center at Washington State University Spokane, Wash., has shown that these individual differences are in large part biologically determined and may even prove to be genetic in origin.

North Carolina Coastal Economy Vulnerable To Sea Level Rise:

A new report finds that North Carolina’s coastline will continue to experience significant loss in land area, property and recreational value in the next 30 to 75 years due to projected changes in climate, leading North Carolina researchers announced.

Breakdown Products Of Widely Used Pesticides Are Acutely Lethal To Amphibians, Study Finds:

The breakdown products (oxons) of the three most commonly used organophosphorus pesticides in California’s agricultural Central Valley — chlorpyrifos, malathion and diazinon — are 10 – 100 times more toxic to amphibians than their parent compounds, which are already highly toxic to amphibians, according to experiments conducted by scientists of Southern Illinois University, Carbondale, and the U.S. Geological Survey (USGS) Western Ecological Research Center.

Genes Play An Unexpected Role In Their Own Activation, Study Shows:

Investigators at St. Jude Children’s Research Hospital have discovered how a single molecular “on switch” triggers gene activity that might cause effects ranging from learning and memory capabilities to glucose production in the liver.
The “on switch,” a protein called CREB, is a transcription factor–a molecule that binds to a section of DNA near a gene and triggers that gene to make the specific protein for which it codes. CREB activates genes in response to a molecule called cAMP, which acts as a messenger for a variety of stimuli including hormones and nerve-signaling molecules called neurotransmitters.
The St. Jude team showed that each gene that responds to CREB chooses which co-factors, or helper molecules, CREB uses to activate that gene. This finding adds an important piece to the puzzle of how cells use CREB to activate specific genes in response to cAMP signals.

Virgin Birth: Shark Expert Comments On Parthenogenesis:

Shark evolution expert Eileen Grogan, Ph.D., discusses recent parthenogenesis findings in female sharks in captivity. The Saint Joseph’s University biologist said this mode of reproduction could have significant impact on small, isolated populations.
Birds do it, bees do it, and now there is evidence that female sharks are able to do it on their own — without the contribution of male DNA. A recent report from a team of American and Irish researchers has concluded that the mysterious appearance in 2001 of an infant female bonnethead shark at Omaha’s Henry Doorly Zoo in a tank that held only two adult female sharks was the result of parthenogenesis (Gr. virgin birth.) Parthenogenic reproduction takes place without fertilization by a male through the process of cell division, when the mother’s egg fuses with a degenerative cell called a polar body, producing a new individual.

ClockQuotes

Wear your learning, like your watch, in a private pocket, and do not pull it out and strike it merely to show you have one. If you are asked what o’clock it is, tell it, but do not proclaim it hourly and unasked, like the watchman.
– Lord Chesterfield

Talking To The Public

So, Anton Zuiker and I went yesterday to the Talking To The Public panel discussion at Duke, organized by Sigma Xi, The Council for the Advancement of Science Writing and The Duke Institute for Genome Sciences & Policy.
There is nothing yet on their websites about it (the 20th century school of thought!), but the entire panel discussion was taped and I’ll let you know once the video is available online (in a week or so?). Once everything is online, it will also be easier for me to write in great detail (links help!) about the event.
It was nice to see David Jarmul and Rosalind Reid again as well as to finally meet Karl Leif Bates (about whose recent activity I will blog a little later).
The panelists were Richard Harris, Joann Rodgers, Cristine Russell and Huntington F. Willard.
Of course, recent blogospheric discussions about science journalism and about framing science were fresh in my mind as I was listening to the panel and the audience.
Harris did the best thing: he played us a short audio of an interview with a Nobel Prize winner conducted one day after the prize was announced. The question was to explain briefly what the research was about. To a journalist. After a few minutes the entire audience at Duke laughed – we were all scientists and not a single one of us understood any of the scientific jargon. I still have no idea if the guy got his Nobel for physics, chemistry or physiology (certainly not for literature!). This really drove home the point that so many of us are so engroessed with our day-to-day research and discussing it with people who are “in the know” that many of us are incapable of recognizing that 99.999999% of the Earth’s population have no idea what you’re talking about!
Harris said that he recently spent some time with a couple of scientists, doing a story that will air in a couple of weeks. He got the absolutely best explanation of the research (on climate science) one day when the 5-year old son asked his Dad something about it and Dad explained it. Bingo! When you talk about your science – think “Five Year Old”! And you’ll get it right. As Harris said – nobody’s ever complained you made it too simple in an interview.
Much of the advice to scientists and to journalists has already been covered by many participants in the blogospheric debate about science journalism. The only one that was new to me was the advice to scientists to ask the journalists questions as well – make it a two-way interview. And in the end, when you explain your work to the journalist, ask the journalist to explain it back to you. That way you’ll know if the message got through or not. If not, keep repeating and rewording it until you get the person to be able to explain it back to you in a satisfactory manner. Then, the published article will likely be OK as well.
The entire debate just reinforced my earlier observation that scientists want to educate, while journalists want to inform. The former pitch to an audience with an assumed scientific background, the latter know that the audience does not know what DNA is and thus pitch much lower. The former insist on accuracy, the latter on relevance. The former eschew the narrative and the anecdotes, the latter know that those are necessary ingredients of a news story without which nobody will read it. But, as I said before, if the two parties are aware of this discrepancy, the two can work together to produce an article that is satisfactory to both.

ClockQuotes

Grad school is the snooze button on the clock-radio of life.
– John Rogers

A Geneticist in Chernobyl

Remember when we discussed the mammal vs. bird survival at Chernobyl the other day? Well, I learned today that someone is about to go and study the humans there as well. I am not exactly sure what kind of reserch it will be, but it will have something to do with the mutations in genomes of the surrounding population.
Sarah Wallace, a senior at Duke University, will be part of the team. And you will be able to follow her adventures and her science on her blog: Notes from Ukraine (MT will not render Cyrillics well so I translated the name of the country)

Media Coverage of Science

I am looking in the closet to see if I can find my tie, because I am going to this in an hour – a very bloggable event:

A Lunch and Panel Discussion
TALKING TO THE PUBLIC: How Can Media Coverage of Science Be Improved?
Friday, June 22, 12-1:30 p.m. at Duke University, Bryan Research
Building, Rm 103, 421 Research Drive, Durham
Sigma Xi, The Scientific Research Society, The Council for the
Advancement of Science Writing (CASW) and The Duke Institute for Genome
Sciences & Policy invite you to a lunch and panel discussion on science
and the media. Scientists and journalists face challenges in explaining
science-and its implications-to the public. A panel of award-winning
science journalists will provide practical advice for scientists about
improving communication with the public through the media.
Panelists:
RICHARD HARRIS, Science Correspondent, National Public Radio, reporting
for
Morning Edition, All Things Considered and Weekend Edition
JOANN RODGERS, Executive Director, Media Relations and Public Affairs,
Johns
Hopkins Medicine; book author; and co-author of studies on genetics and
the media
CRISTINE RUSSELL, CASW President; Harvard Kennedy School of Government
journalism fellow; and former Washington Post science reporter
Discussant: HUNTINGTON F. WILLARD, Director, Duke Institute for Genome
Sciences & Policy (IGSP)

My Picks From ScienceDaily

Prey Not Hard-wired To Fear Predators:

Are Asian elk hard-wired to fear the Siberian tigers who stalk them” When wolves disappear from the forest, are moose still afraid of them? No, according to a study by Wildlife Conservation Society scientist Dr. Joel Berger, who says that several large prey species, including moose, caribou and elk, only fear predators they regularly encounter. If you take away wolves, you take away fear. That is a critical piece of knowledge as biologists and public agencies increase efforts to re-introduce large carnivores to places where they have been exterminated.

Electric Fish Conduct Electric Duets In Aquatic Courtship:

Cornell researchers have discovered that in the battle of the sexes, African electric fish couples not only use specific electrical signals to court but also engage in a sort of dueling “electric duet.” The study is the first to compare electrical and behavioral displays in breeding and nonbreeding Brienomyrus brachyistius, a type of mormyrid electric fish, which emit weak electric fields from a batterylike organ in their tails to sense their surroundings and communicate their species, sex and social status with other fish. It is also the first study to successfully sort signals in electric fish based on sex.

Invertebrate Immune Systems Are Anything But Simple:

A hundred years since Russian microbiologist Elie Metschnikow first discovered the invertebrate immune system, scientists are only just beginning to understand its complexity. Presenting their findings at a recent European Science Foundation (ESF) conference, scientists showed that invertebrates have evolved elaborate ways to fight disease.

Wild Sheep Descended From Single Pair Show Surprising Genetic Diversity:

Scientists at Université du Québec à Montréal have reconstructed the genetic history of a population of mouflons (wild sheep) descended from a single pair. The researchers demonstrated that the animals’ genetic diversity increased over time, contrary to what the usual models predict. These results contradict the belief that a population descended from a small number of individuals will exhibit numerous deficiencies and reduced genetic diversity.

Placental Mammals Originated On Earth 65 Million Years Ago, Researchers Assert:

An early mammal fossil discovered in Mongolia led to researchers asserting that the origins of placental mammals, which include humans, can be dated to approximately 65 million years ago in the Northern Hemisphere. These findings will be published in the June 21 issue of Nature.

Brain’s Voluntary Chain-of-command Ruled By Not One But Two Captains:

A probe of the upper echelons of the human brain’s chain-of-command has found strong evidence that there are not one but two complementary commanders in charge of the brain, according to neuroscientists at Washington University School of Medicine in St. Louis.
It’s as if Captains James T. Kirk and Jean-Luc Picard were both on the bridge and in command of the same starship Enterprise.
In reality, these two captains are networks of brain regions that do not consult each other but still work toward a common purpose — control of voluntary, goal-oriented behavior. This includes a vast range of activities from reading a word to searching for a star to singing a song, but likely does not include involuntary behaviors such as control of the pulse rate or digestion.

ClockQuotes

Three o’clock is always too late or too early for anything you want to do.
– Jean-Paul Sartre

An Inspiring Story!

I dropped by Anton’s blog as I tend to do every day and saw something that caught my eye in his side-bar SugarCubes – an amazing story about William Kamkwamba, a 19 year old boy in Malawi who had to quit school because his family did not have money. So, he started teaching himself from books. And he learned how to do things and used whatever materials were available to design and construct a windmill, a transformer and other stuff. A bunch of African bloggers picked up a story about him and one thing led to another – he spoke at TED conference, got funds for schooling, and, just a few weeks ago, as soon as he first laid his hands on a computer, started his own blog.

Because they do not have the X-rating…

What's My Blog Rated? From Mingle2 - Online Dating
This rating was determined based on the presence of the following words:
* sex (18x)
* death (13x)
* suicide (6x)
* hell (3x)
* dangerous (2x)
* penis (1x)
Thanks, Jennifer

Blogrolling for Today

World Wide Webbers

VWXYNot?

Darwin’s Army

Relatively Science

Let’s Talk Sleep

Sparrowblog

Limbic Nutrition

Voters’ Brains and Framing Politics

First, a video of Jonathan Haidt – Morality: 2012 (Hat-tip to Kevin):

The social and cultural psychologist Jonathan Haidt talks with Henry Finder about the five foundations of morality, and why liberals often fail to get their message across. From “2012: Stories from the Near Future,” the 2007 New Yorker Conference.

Second, a post by Drew Westen – Winning Hearts and Minds: Why Rational Appeals Are Irrational If Your Goal is Winning Elections:

The difference between the Clinton ad and the Kerry ad — like the difference between the Clinton campaign and virtually every other Democratic presidential campaign of the last three decades — reflects the difference between understanding and misunderstanding mind, brain, and emotion in American politics. If you think the failure to tell a coherent story, or to illustrate your words with the evocative images, is just the “window dressing” of a campaign, you’re missing something very important about the political brain: Political persuasion is about networks and narratives.

Finally, the latest articles from the Rockridge Institute:
Debating Energy as if Communities Mattered
What the Media Is Missing about the Summer of Love
To Catch a Wolf: How to Stop Conservative Frames in Their Tracks

Of course the media is infantile when their main news source is a baby!

Thanks to Jeff over on Shakesville (or should it be IN Shakesville?):
Election Central reports that Drudge (who the hell and why still reads that sleazeball of all people!?) tried to slander Edwards by insinuating that his daughter Emma-Claire supports Hillary:

Her comment came in response to a Drudge item quoting a local newspaper account that suggested that the Edwards’ nine-year-old child supported Hillary, not her father.
Election Central has learned that Elizabeth put a comment in the comments section of another Web site’s post debunking the Drudge item.
Elizabeth claimed the daughter was joking and mocked Drudge as follows:
“It was Emma Claire, who pointed to a Hillary pin slyly and then, smiling pointed to her father. A nine-year [old] sense of humor — you would have thought Matt Drudge would have been able to pick up on that.”

I thought the conservatives were arrested at an adolescent stage of emotional development, but some like Drudge were, apparently, left behind even earlier – in temper-tantrumesque toddlerhood.

Bloggers in Spaaaace!

Carnival of Space #8 is up on Universe Today.

My Picks From ScienceDaily

Why Female Deer Like A Stag To Be A Big Noise In The Forest:

Impressive antlers may be the most eye-catching attribute of the male red deer, but it’s the quality of a stag’s mating call that attracts the female of the species, a new study from the University of Sussex has discovered.

Surprising Origin Of Cell’s Internal Highways:

Scientists have long thought that microtubules, part of the microscopic scaffolding that the cell uses to move things around in order to hold its shape and divide, originated from a tiny structure near the nucleus, called the centrosome. Now, researchers at Vanderbilt University Medical Center reveal a surprising new origin for these cellular “highways.” In the June issue of Developmental Cell, Irina Kaverina, Ph.D., and colleagues report that the Golgi apparatus — a stack of pancake-shaped compartments that sorts and ships proteins out to their cellular destinations — is the source of a particular subset of these microscopic fibers. The findings point to a novel cellular mechanism that may guide cell movement and possibly cancer cell invasion.

Another Sexual Attraction Is Possible:

The coming summer vibrates with expressions of insect love and desire. The cicada’s songs or the butterflies’ bright colours are examples of how an emitting sex attracts conspecific members of the responding sex. Moth odours (pheromones), though less conspicuous for us humans, are also signals by which females guide males towards them, even on the darkest nights. Such mating recognition systems tend to be very specific, hence they are thought to play a major role in the evolution of mating barriers and in the formation of new species.

Plant Life On Extrasolar Earthlike Planets Could Be Black:

When we think of extrasolar Earth-like planets, the first tendency is to imagine weird creatures like Jar Jar Binks, Chewbacca, and, if those are not bizarre enough, maybe even the pointy-eared Vulcan, Spock, of Star Trek fame. But scientists seeking clues to life on extrasolar planets are studying various biosignatures found in the light spectrum leaking out to Earth to speculate on something more basic and essential than the musical expertise of Droopy McCool. They are speculating on what kind of photosynthesis might occur on such planets and what the extrasolar plants might look like.

What Gives Freezing Its Sting?:

Freeing knotted shoelaces with fingers that are frozen stiff is extremely difficult and can even be painful. The reason that sensitivity and dexterity are poor is that both nerves and muscles perform their tasks reluctantly when they are cold. Nevertheless ice-cold fingers ache and do so all the more in response to the lightest of knocks or squeezing.

ClockQuotes

I loathe the expression ‘What makes him tick’ … A person not only ticks, he also chimes and strikes the hour, falls and breaks and has to be put together again, and sometimes stops like an electric clock in a thunderstorm.
– James Thurber

The Eight Random Facts Meme

I got tagged by Steve Poceta -(if you are more interested in sleep disorders than circadian clocks in funny animals, his blog is more interesting to you than mine) to participate in the Eight Random Facts Meme. Here are the rules:

1. Players start with 8 random facts about themselves.
2. Those who are tagged should post these rules and their 8 random facts.
3. Players should tag 8 other people and notify them they have been
tagged.

So, here are the eight random, late-night-after-a-busy-day-and-a-strong-beer facts about me:
1. I used to wear a goatee. When I arrived in the USA, I was told a few times I looked like Jesus Christ, so I shaved it off before getting all the new documents.
2. I just traded in a clunky old Ford Winstar for a nice Toyota Corolla earlier today.
3. I used to translate Disney comic strips (yup, Mickey, Donald etc.) from English into Serbo-Croatian. Not a well-paying job, but certainly fun!
4. I have no tattoos, never wanted one, and probably will never get one.
5. My favourite city in the world is Stockholm – I wish it was more South….I was there during the record-breaking heat of summer 1990. My best friend from middle school lives there.
6. Once I played guitar for 12 hours straight (4pm – 4am) without a break and without repeating a single song. It was on a camping trip with a bunch of aikido folks who knew how to massage my wrists to keep them working through the night. They also helped with some of the lyrics.
7. The name of my second horse was the Hebrew translation of the Serbian name of my first horse (the first was Meraklija, the second was Kefli – both mean something like “a person who really knows how to enjoy life”). The two were half-brothers and I bought the second horse one day after he was born (and paid when he was six months old and ready to be weaned and shipped away).
8. The first and only pet I had as a child was a little turtle named Eschillus. Now my mother realizes I finally achieved my biggest goal in life: a house full of animals.
People I tag:
Jenna
Archy
Zuska
Sheril
Laelaps
Jennifer
Karen
Orli
Update: Laelaps, Zuska and Orli have responded so far. And Jenna. And Archy. And Karen.

Skeptic’s Circle is up

Skeptic’s Circle #63 (the Solstice Edition) is up on Relatively Science

To Educate vs. To Inform

You may be aware of the ongoing discussion about the tense relationship between scientists and science journalists. Here is the quick rundown of posts so far:
Question for the academic types–interview requests
The Mad Biologist and Science Journalists
Science Journalists are NOT the Problem
Just don’t quote me
Science and the Press
Scientists and Journalists, Part Deux
Scientists in the Media
Science/journalists update redux: Mooney chimes in
Science and journalism
Journalists and scientists – an antimatter explosion?
Madam Speaker, I Yield My Remaining Time to the Paleontologist from the Great State of California
Scientists and Journalists, Redux
Scientists and journalists, still going….
[More:
Science and Journalism
On dealing with journalists
Scientists and journalists
Scientists and the Media
Education and Media Relations
Lying to Children about Drugs
Press releases and the framing of science journalism]
Very smart stuff in posts and comments, to which it is difficult to add anything very new and creative. But….
Everyone is afraid to use the F word, but the underlying tension is, at its core, the same as in the discussion of Framing Science:
The scientists want to educate.
The journalists want to inform (if not outright entertain, or at least use entertaining hooks in order to inform).
There is a difference between the two goals. The former demands accuracy. The latter demands relevance. As long as both parties are aware of the existence of two disparate goals, there is a possibility of conversation that can lead to an article that satisfies both goals, thus both participants.
Media is not the place for education and scientists need to understand this simple fact. But media is great at attention-getting, so those who are intrigued by a news report can follow up and get educated on top of getting informed.
I was never interviewed about my research. If I was, I suspect I’d have some horror stories to tell because I’d have been tempted to educate instead of inform. All the articles for which I was interviewed (linked below the fold), either by professional journalists or by other bloggers, were about the Conference, the Anthology, or about science blogging in general. I have nothing but positive impressions of the people who conducted the interviews.

Continue reading

New and Exciting on PLoS-ONE

A gazzillion new papers got published on PLoS-ONE today. Some of the titles that caught my attention and I intend to read tonight are:
The Role of the Substantia Nigra Pars Compacta in Regulating Sleep Patterns in Rats
Climate and Dispersal: Black-Winged Stilts Disperse Further in Dry Springs
The Adaptive Significance of Sensory Bias in a Foraging Context: Floral Colour Preferences in the Bumblebee Bombus terrestris
Assortative Mating between European Corn Borer Pheromone Races: Beyond Assortative Meeting
As always, do the Science 2.0 thing and post your (intelligent) questions and comments on the paper itself, either in the Discussions or the Annotations.

HIV – population size, prostitution prevalence or circumcision?

Circumcision is always one of the topics with the most spirited discussions on science blogs. Here, a brand new paper on PLoS-ONE will likely stir up the conversation yet again (hopefully on the annotations and discussions attached to the paper itself, so please go there if you have questions/comments on the study):
Size Matters: The Number of Prostitutes and the Global HIV/AIDS Pandemic by John R. Talbott

HIV/AIDS prevalence rates across countries of the world vary more than 500-fold from .06% in Hungary to 33.4% in Swaziland. One of the most cited research papers in the field, utilizing cross country regression analysis to analyze other correlates with this HIV prevalence data, is flawed in that it weights each country’s results by the country’s population.
Based on cross-country linear and multiple regressions using newly gathered data from UNAIDS, the number of female commercial sex workers as a percentage of the female adult population is robustly positively correlated with countrywide HIV/AIDS prevalence levels. Confirming earlier studies, female illiteracy levels, gender illiteracy differences and income inequality within countries are also significantly positively correlated with HIV/AIDS levels. Muslims as a percentage of the population, itself highly correlated with country circumcision rates and previously found to be negatively correlated with HIV/AIDS prevalence, is insignificant when the percentage of commercial sex workers in a population is included in the analysis.
Conclusions/Significance
This paper provides strong evidence that when conducted properly, cross country regression data does not support the theory that male circumcision is the key to slowing the AIDS epidemic. Rather, it is the number of infected prostitutes in a country that is highly significant and robust in explaining HIV prevalence levels across countries. An explanation is offered for why Africa has been hit the hardest by the AIDS pandemic and why there appears to be very little correlation between HIV/AIDS infection rates and country wealth.

Science Blogging of the Fortnight

Greg Laden has a special guest-blogger for today’s Tangled Bank #82, someone from the past, intrigued by this thing we call “The Blogos Fear”.

The 2006 Impact Factors are now avaliable

The 2006 Thomson Scientific Journal Citation Reports were released today. Mark Patterson reports on the PLoS journals, three of which have made it to the list for the first time, as they are too new, so their ratings are based on just a portion of the time:

The 2006 impact factors have just been released by Thompson ISI. The first two PLoS journals continue to perform very well: 14.1 for PLoS Biology (14.7 in 2006); 13.8 for PLoS Medicine (8.4 in 2006). The PLoS community-run journals also received their first impact factors: 4.9 for PLoS Computational Biology; 7.7 for PLoS Genetics; and 6.0 for PLoS Pathogens. (Note that the latter impact factors are based on only around six months worth of publications in 2005, and are likely to increase next year.)
Although the impact factor is an over-used and abused measure of scientific quality, it is a journal metric that is important for the research community, and so until there are alternatives, PLoS has to pay attention to the impact factor.

PLoS-ONE, if I am correct, should appear in the Report next year.
Also, for my circadian readers, it may be of interest how our flagship journal, Journal of Biological Rhythms fared. Here is from the e-mail from the Editor:

I’m happy to report that JBR’s Impact Factor has increased! JBR’s 2006 Impact Factor is 4.633, compared to 4.367 for 2005. JBR is now ranked 7/64 in the Biology category (compared to last year’s 8/65) and 8/79 in the Physiology category (compared to last year’s 8/75).

Update: Alex has access, so he pulled out a few more ratings for top journals.

Lessig moves on, to even bigger and more important battles

After 10 years of fighting for open source, net neutrality, free information and open education, Lawrence Lessig has decided to change his career and to seriously attack the problem of corruption in the U.S. politics. It’s not going to be easy, but having Lessig on our side in this battle is a great assett. Read his explanation (though you know I disagree with him on Obama and corruption) as it is very telling and well-written.
Hat-tip: Danica (where you can also see the movie of Lessig giving a speech in which he made the announcement).

Liberal Blogging of the Fortnight

Carnival of the Liberals #41 is up on World Wide Webbers

Blogrolling for Today

Catalogue of Organisms

Morbid Anatomy

Street Anatomy

Scientific curiosity

The Bird’s Brain

YOKOFAKUN

Banapana

Shadow of the Hegemon (check out the archives – this blog is oooold!)

Carnivalia

Four Stone Hearth #16 is up on Hominin Dental Anthropology.
Education Carnival #124 (Back to the Beach) is up on What It’s Like on the Inside.
Carnival of Homeschooling #77 is up on Consent Of The Governed.

My Picks From ScienceDaily

Are Rattlesnakes Entering Suburbia?:

A researcher for Washington University in St. Louis, along with colleagues at the Saint Louis Zoo and Saint Louis University are tracking timber rattlesnakes in west St. Louis County and neighboring Jefferson County. They are investigating how developing subdivisions invade the snakes’ turf and affect the reptiles.

Reconstructing The Biology Of Extinct Species: A New Approach:

An international research team has documented the link between the way an animal moves and the dimensions of an important part of its organ of balance, the three semicircular canals of the inner ear on each side of the skull. “We have shown that there is a fundamental adaptive mechanism linking a species’ locomotion with the sensory systems that process information about its environment,” says Alan Walker, Evan Pugh Professor of Anthropology and Biology at Penn State University, one of the team’s leaders.

Gannet Birds Under Threat From Global Warming:

Researchers at the University of Leeds have warned that global warming is a major threat to the gannet, a species known for its stable populations and constant breeding success.

Fat Fish Put Obesity On The Hook:

Everyone knows that eating lean fish helps slim waistlines, but researchers from the Center for the Study of Weight Regulation and Associated Disorders at Oregon Health and Science University in Portland, OR, have found a new way fish can help eliminate obesity. In a study to be published in the July 2007 print issue of The FASEB Journal, researchers describe the first genetic model of obesity in a fish. Having this model should greatly accelerate the development of new drugs to help people lose weight and keep it off.

Continue reading

ClockQuotes

It is all right for the lion and the lamb to lie down together if they are both asleep, but if one of them begins to get active it is dangerous.
– Crystal Eastman

Introducing – Digby!

The Adult Film Industry: Time to Regulate?

For medical reasons, if nothing else.

SciTalk.com

On the heels of this post, I was informed of another Web2.0 site for scientists that just launched – SciTalks collects talks and lectures by scientists on a variety of topics. There are already many clips available on the site, which you can rate, or add some from your own collection. You can find out more about the site here and at the site’s blog.

The Power of Name

red_rose2.jpgWhat’s in a name? It’s just a word, a tag we use to talk about people so everyone knows wo we are talking about, isn’t it? Or at least that is how it should be, don’t you think?
But it is not, as anthropologists (and now psychologists as well) have been telling us for a long time. There is a reason why names run in families (with the addition of Jr., II, III, …). There is a reason why there is a big market for Baby Names books. Names have subtle power over people.
Now, Sheril discusses a recent study from the University of Florida about the subtle effect of female names on their prospects in science and math.
As a kid, I never thought of this. You meet people and learn their names and never think of names as being weird, or macho or feminine or whatever. This only starts happening as you are growing up and accumulating your own life’s name-list. And your name-list will be deeply affected by people you personally know. It took me a while to shed the notion that every Sofia is superficial and shallow because the first Sofia I have ever known (a girl I sat with in 2nd grade) was such a person.
I was most struck with the entire notion of the importance of names once we started picking names for our own babies. And those were names in Engish language. For my wife, the names were colored mainly by her own childhood experiences. For me, the first encounters with most of those names were in movies, TV shows and books. We disagreed on almost every name as to what it denotes!
What bothers me most about the study (and Sheril touches on that somewhat) is the definition of ‘feminine’. What is it? Who’s asking? Does ‘feminine’ mean pale, thin, silent wallflower? Or chick with a nice sat of T&As?
And this is where, I think, the study reveals not so much sexist thinking as classist! The names that are considered “soft” are also names considered to be “aristocratic”, names you find in the lineage of the British Monarchy, for instance. The “hard” names are considered to be more masculine because they are also considered to be more proletarian – names of people you can encounter actually doing hard work.
It has already been documented in the past how names that obviously belong to African American women are a handicap in getting a job or getting accepted at a University (refs, anyone?). As for the names that are not currently popular – if you know someone of that name, it is probably an older lady, who may behave in an old-fashioned way (from your perspective), so you get your prejudices from that.
Anyway, as you are growing up, it is not the other kids that judge you by your name (or even by your looks), it is the adults. And that can certainly influence your self-esteem and your choice of career. So, I am not surprised by the finding of the study, as much as concerned as to how to counter it in practice.
Update: I wrote the above in a 15-minute rush. May come back later to add some more in the comments. Here is the original Observer article (does anyone have an actual published paper of this?)
Also see good discussions on Thus Spake Zuska, Omni Brain, I am … unhindered by talent, Gene Expression Classic, Joanne Jacobs and Pharyngula.
Update: More interesting takes on The Island of Doubt, The Scientific Indian and Adventures in Ethics and Science.

Is sunshine good for you?

“Is sunshine good for you?” is the latest Ask a ScienceBlogger question and Nick Anthis did a great job answering it – focusing on the circadian aspects of the need for sunlight – in his response here. Excellent and quite correct, if I may say so, (and I had trouble commenting on his blog, so I’ll put it here) except perhaps the details of the Viagra paper.

Green Genes and Grand Brains

Carnival of the Green #82 is up on Enviroblog.
Gene Genie #9 is up on DNA Direct Talk.
Grand Rounds 3:39 are up on Code Blog.
Encephalon #25 is up on PsyBlog.

ClockQuotes

I suppose I have a really loose interpretation of “work”, because I think that just being alive is so much work at something you don’t always want to do…. The machinery is always going. Even when you sleep.
– Andy Warhol

Blogrolling for Today

Haliaeetus

Finito

…Or Something

Science Hacker

k/o

All of My Faults Are Stress Related

The Evil Petting Zoo

Open Access Archivangelism

So, which cover do you like better?

This one?
Or this one?
Framing Science is not just verbal. Visual aspects are also important.

Bay Area Bloggers!?

I know Bay Area is a big blogging center – almost as dense with bloggers as Greensboro, NC – but I am not exactly sure which of the bloggers I know actually live there. Since I’ll be in San Francisco in July, I’d like to meet some of the local bloggers. Is there a MeetUp? An aggregator? Do local bloggers attend Drinking Liberally? Is there anything happening during the summer at all?
The NC expats in San Francisco, Josh Steiger and Justin Watt, I’m sure I’ll meet as we are friends and we’ll be in touch. Perhaps I’ll get to meet danah boyd (I missed it when she came here to UNC).
And of course, there are science bloggers, including Jennifer Wong, Janet Stemwedel, Craig McClain and Rick MacPherson. Anyone else?
Anyone wants to go see Iron Science Teacher with me? Or the opening of the new Harry Potter movie on July 11th?
Let me know (comments or e-mail) if you will be in the SF area in July and if you’d like to meet in person.

Pediatric Blogging of the Month

Pediatric Grand Rounds 2:5 are up on Med Journal Watch

ClockQuotes

I am accustomed to sleep and in my dreams to imagine the same things that lunatics imagine when awake.
– Rene Descartes

Happy Birthday!

On this day in 1991 I hopped on a train and left Belgrade for good.
On this same day, a little bit earlier in history, a baby was born.
Somehow, those two events got connected.
Happy birthday to my wife!

Everything You Always Wanted to Know About Pennicillin (and more)

Here is an example of perfect science blogging. It starts seemingly innocuously, with a quiz: Monday’s Molecule #30, where you are supposed to figure out what the compound is.
Then, after a couple of days, there is a post that you may not even realize at first is related to the first one: Bacteria Have Cell Walls
Another day or two, and A and B get connected: How Penicillin Works to Kill Bacteria
But how do we know this? Well, some people figured it out: Nobel Laureates: Sir Alexander Fleming, Ernst Boris Chain, Sir Howard Walter Florey – and now you know how we know.
Finally, putting everything in context of science, society, medicine and history, a two-parter: Penicillin Resistance in Bacteria: Before 1960 and Penecillin Resistance in Bacteria: After 1960
A tour-de-force of science blogging. I wish I could do something like that.

Strange Search Queries…

Matt at Behavioral Ecology Blog is asking what strange searches bring readers to my blog. I was too lazy to go to Google Analytis (changing passwords and stuff), so I just checked the last 100 referees on Sitemeter and I found these:

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