Science 2.0

I think I have a profile on Friendster – I don’t know, I haven’t checked since 2003. I have bare-bones profiles on MySpace, LinkedIn and Change.Org and I will get an e-mail if you “friend” me (and will friend you back), but I do not have time to spend on there. I refuse to even look at all the other social networking sites like Twitter – there are only so many hours in the day.
But I am interested in possible ways of making science communication more interactive and more Webby 2.0, beyond just blogs. Pedro, Carl and Phillip have recently written thoughtful posts about this topic as well.
So, I am looking around to see what works. I set up profiles on Knowble and Nature Network. I check out the Sci/Tech section of NewsTrust and the Science tag on DailyKos every now and then. I check, as regularly as I can make myself, what’s new on Connotea, Postgenomic, Scintilla and JeffsBench. And of course I read tons of science blogs.
All of those are interesting experiments in different aspects of Web2.0 and, considering my soon-to-start job, I’ll be tracking all those experiments very closely to see what works and what doesn’t and why.
But my own personal favourite – and I’ll have to figure out why I like it so much – is Facebook. Some of my old NCSU students put me on there as soon as it was launched (only a few have un-friended me since) and I can see as they get jobs, get married, etc., which is quite nice. I set up a profile (yes, you can ‘friend’ me – just say you are my reader) and have been hooked ever since.
Then, I started reading what Fred Stutzman writes on his blog – he is doing a PhD on social networks here at UNC, with a special emphasis on Facebook. I repeated for the NCSU network a study he did in the UNC network.
Then, as an experiment, I started friending hundreds of ex-Yugoslavs all around North America and realized how the youngsters appear to have no animosity towards the “other” ethnics groups: Serbs, Croats, Slovenians, Macedonians, Montenegrins, Bosnians, Kosovo Albanians, etc. – all are friending each other, joining various “Yugo-nostalgic” groups, etc.
When Facebook opened its doors to non-‘edu’ addresses, the first result was dismaying. I suddenly started getting friends requests from various scantily clad women who wanted me to support their modeling agencies, or to vote for them on Maxim or some such stuff. My thought at the time was “Oh my, there goes Facebook, following MySpace into the junk territory…”
So, I deleted several hundreds of “friends” and left only those I knew personally very well, either online or offline. That was also the time when others – more serious types – started discovering the Facebook. Now, you can join fan-club groups of such blogs as Pharyngula, Pandagon (also I Am Amanda Marcotte), Shakesville, Pam’s House Blend, Feministe, Firedoglake and Blue NC, or a broader North Carolina Bloggers group. And you can make friends with those blogs’ owners, contributors, commenters and lurkers.
Since yesterday, you can also join the fan-club group of A Blog Around The Clock. Or you may prefer to join the fans of Scienceblogs.com.
There are many fun groups there, like Sleep… it’s the new sex. But there are also a growing number of science-related groups, e.g., Order of the Science Scouts of Exemplary Repute and Above Average Physique, Prof. Steve Steve is my Hero!, The Skeptics’ Guide to the Universe, STS (Science and Technology in Society) and Charles Darwin Has A Posse.
Some groups are more action-oriented, e.g., Access to Research Now!, I want national wireless Internet!, Net Neutrality, Abolish Abstinence Only Sex Education, Support Stem Cell Research or Stop the U.S.Army from bombing Pinon Canyon dinosaurs.
One can follow the links and links-within-links from group to group, from friend to friend, and find all sorts of stuff. Last year, I made an ‘event’ for the NC Science Blogging Conference and will do so again a little later in the year for the Second conference. I may try to promote the Anthology there, or build a fan-club of PLoS. And with the new ability to add all sorts of applications built outside of Facebook, the possibilities for online connections of scientists are endless. Will there be a Connotea app there soon? Postgenomic? All we need to do is get more scientists to sign up and who knows what may come out of it in the end!
Update: I just noticed that Euan also thought about Facebook in terms of Science 2.0
Related: Bertalan Meskó – 10 Tips for How to Use Web 2.0 in Medicine
Has anyone looked at Erudix yet?
And for the YouTube of science, check JoVE and Lab Action
More on Facebook:
Dave Winer:

When someone lists you as a “friend” on Facebook you get to confirm it. That’s good.
When you click on the “Confirm” button, you get a list of choices that almost never seems to have the right choice. Does that mean you don’t have a relationship with the person? No. It means that the list of possible choices hasn’t been updated since Facebook was opened to people outside the education system.

Dave Winer again:

Everyone is going ga-ga over Facebook, but like the people who hold out on Twitter, I’m not ready to give my life to a service that views me as a college student. My relationships are adult relationships. Okay, I probably won’t even use Facebook when they offer me some realistic choices on labels for the arcs that connect me with people in my network, because what we really need is an architecture that allows anyone to add a tag to an arc, the same way we add tags to pictures on Flickr.

BTW, one does not have to choose from one of the given options, but can invent a new one (perhaps they listened to Dave and fixed this).
Fred Stutzman:

I think my thoughts on how higher ed could use the platform warrant another post. I might even mock up a few ideas. Your ideas and feedback welcome in the thread.

Danica:

I love Facebook and all the apps that are popping up each day. This is not anymore the second, but third life…

Scoble:

Conclusions: if you held a gun to my head and made me choose only one of these services I’d pick Facebook. Especially if I already didn’t have a blog as a platform to communicate with other people.

Blogrolling for Today

Just Noticeable Differences

Miss ELISA’s world

Eureka Science Forums

Britannica Blog

STS Wiki

Purse Lip Square Jaw

Muttering in a corner

ClockQuotes

When the tea is brought at five o’clock
And all the neat curtains are drawn with care,
The little black cat with bright green eyes
Is suddenly purring there.

– Harold Monro

My Picks From ScienceDaily (Psych edition)

Science Student Gender Gap: A Continuing Challenge:

Interactive classes don’t necessarily solve the performance imbalance between the genders in physics classes, according to a new study that stands in stark contrast to previous physics education research. In fact, while students as a rule benefit from interactive classrooms, the teaching technique may even increase the imbalance in some cases.

Chad has more on this study.
Paying Taxes, According To The Brain, Can Bring Satisfaction:

Want to light up the pleasure center in your brain? Just pay your taxes, and then give a little extra voluntarily to your local food bank. University of Oregon scientists have found that doing those deeds can give you the same sort of satisfaction you derive from feeding your own hunger pangs.

Sleep Disturbances Among The Elderly Linked To Suicide:

Self-reported sleep complaints among the elderly serve as a risk factor for completed suicide, according to new research. The study, conducted by Rebecca Bernert of Florida State University, focused on data that were collected among 14,456 community elders over a 10-year period. During this time frame, 21 individuals died by suicide. When each suicide was matched to 20 randomly-selected controls, it was discovered that disturbances in sleep, independent of depression, predicted an increased risk for eventual death by suicide.

Pride May Not Come Before A Fall, After All:

The Bible got it wrong. Pride only goes before a fall when it’s hubris — excessive pride that veers into self-aggrandizement and conceit. But otherwise, this emotion is fundamental to humans and healthy self-esteem, says Psychology Asst. Prof. Jessica Tracy.

Music: Mirror Of The Mind:

The long supposed connection between mind and music has been further demonstrated by an international collaboration of physicists led by Simone Bianco and Paolo Grigolini at the Center for Nonlinear Science at the University of North Texas. A statistical analysis reveals a remarkable similarity between the distributions produced by music compositions and brain activity.

Blip – creative arts, science and technology

What is it?:

Blip is a forum for artists, scientists and members of the public interested in new forms of art that explore generative and procedural processes, interaction, emergence and artificial life. We are based in Brighton, UK, and in the last 4 years we have organized presentations, exhibitions, gigs and three Big Blip festivals. To facilitate access, we primarily organize events in bars, clubs and other public venues in the centre of the city.

I have not been in Brighton since 1980 and I have not heard of Big Blip festivals until last night. Can someone tell me more? It sounds really interesting.

My Picks From ScienceDaily

Fruit Bats Are Not ‘Blind As A Bat’:

The retinas of most mammals contain two types of photoreceptor cells, the cones for daylight vision and colour vision, and the more sensitive rods for night vision. Nocturnal bats were traditionally believed to possess only rods. Now scientists at the Max Planck Institute for Brain Research in Frankfurt and at The Field Museum for Natural History in Chicago have discovered that nocturnal fruit bats (flying foxes) possess cones in addition to rods. Hence, fruit bats are also equipped for daylight vision. The researchers conclude that cone photoreceptors might be useful for spotting predators and for social interactions at periods of roosting during the day. Flying foxes often use exposed treetops as daytime roosts, where they assemble in large colonies (Brain, Behavior and Evolution, online May 2007).

Disappearing Common Birds Send Environmental Wake-up Call:

Birdsongs that filled the childhoods of countless baby-boomers are rarely heard wafting on today’s spring breezes….Once-familiar avian spectacles now elude young birdwatchers…It’s not your imagination… A new analysis by the National Audubon Society reveals that populations of some of America’s most familiar and beloved birds have taken a nosedive over the past forty years, with some down as much as 80 percent. The dramatic declines are attributed to the loss of grasslands, healthy forests and wetlands, and other critical habitats from multiple environmental threats such as sprawl, energy development, and the spread of industrialized agriculture.

Whale Has Super-sized Big Gulp:

How does the largest animal on earth survive on a diet of the smallest of prey? By having a jaw that spans a quarter of its body length, an enormous mouth that goes from the head to the belly button, and by doing lots of “lunges,” according to UBC zoology PhD candidate Jeremy Goldbogen.

Bacteria Can Hide Out In Cells For Weeks:

A major cause of human and animal infections, Staphylococcus aureus bacteria may evade the immune system’s defences and dodge antibiotics by climbing into our cells and then lying low to avoid detection. New research shows how S. aureus makes itself at home in human lung cells for up to two weeks.

Single-celled Transformers: Marine Phytoplankton Changes Form To Protect Itself:

A tiny single-celled organism that plays a key role in the carbon cycle of cold-water oceans may be a lot smarter than scientists had suspected. Researchers report the first evidence that a common species of saltwater algae — also known as phytoplankton — can change form to protect itself against attack by predators that have very different feeding habits.

An Intelligent Storkist Designs a Straw Man

an%20intelligent%20stork.jpg
Explanation
Actually, the picture (author is Antun Zuljevic, a birder extraordinnaire) is from the village of Svilojevo in northern Serbia (Vojvodina, near the town of Apatin on the Danube) where the Locust Trees have been cut, and nobody is building large haystacks any more, so the storks are forced to build nests in crazy places. This pair of White Storks was not successful in nesting on this factory chimney last year, but they had better luck this time around. Yup, storks prefer nesting on chimneys only in fairy tales. In reality, that is the site of last resort.
Source: Google group of Ptica
Hat-tip:Tatjana

Ecology Blogging of the Month

Oekologie # 6 is up on Greg Laden’s blog. So, is blogging journalism?

Is It Plagiarism? I Think So…

You may have noticed a site called “New York Articles” (http://nyarticles.com/) which “aggregates” content from a bunch of different blogs, including this one as well as a number of other scienceblogs.com blogs. It copies and pastes everything that is in the RSS feed, i.e., everything that is above the fold. As you know, I only occasionally place stuff under the fold, and some people never do.
Sure, it does provide a link at the bottom, so in that way, it is a tiny little bit better than some sites that don’t (you may recall this case – see Part I and Part II). But how much better? What does it accomplish? Who is actually going to read the stuff on that crappy-looking site site instead of the originals?
Is it as bad as this pathetically uncreative guy and his notion of “creative editing”?
Unfortunately, the NYA site brings in Google and Yahoo searches, it shows up on Google Blogsearch and Technorati, and someone somewhere is making money from Google AdSense by stealing other people’s content.
But, what personally irks me the most is that our content is mixed up with content coming from places I don’t want to be associated with, e.g., that den of racist, sexist, homophobic, xenophobic, femiphobic jerks at Little Green Footballs. That is not the kind of neighbors I want to have. I like my neighbors at Scienceblogs.com and that is why I am here – it was my choice (and Seed’s) and I’d like to have some say in where my content appears online.
So, if you are reading this at a place that is NOT http://scienceblogs.com/clock/ you are at a wrong place and you are unwittingly helping some lowly parasite earn undeserved money from advertising. Skip it. Come here and get my real RSS feed instead.
And….

Continue reading

Everything Important Cycles

Blogging on Peer-Reviewed Research

Microarrays have been used in the study of circadian expression of mammalian genes since 2002 and the consensus was built from those studies that approximately 15% of all the genes expressed in a cell are expressed in a circadian manner. I always felt it was more, much more.
I am no molecular biologist, but I have run a few gels in my life. The biggest problem was to find a control gene – one that does not cycle – to make the comparisons to. Actin, which is often used in such studies as control, cycled in our samples. In the end, we settled on one of the subunits of the ribosome as we could not detect a rhythm in its expression. The operative word is “could not detect”. My sampling rate was every 3 hours over a 24-hour period, so it is possible that we could have missed circadian expression of a gene that has multiple peaks, or a single very narrow peak, or a very low amplitude of cycling (it still worked as a control in our case, for different reasons). Thus, my feeling is that everything or almost everything that is expressed in a cell will be expressed in a rhythmic pattern.
If you have heard me talk about clocks (e.g., in the classroom), or have read some of my Clock Tutorials, you know that I tend to say something like “All the genes that code for proteins that are important for the core function of a cell type are expressed in a circadian fashion”. So, genes important for liver function will cycle in the liver cells, genes important for muscle function will cycle in muscle cells, etc.
But I omit to note that all such genes that are important for the function of the cell type are all the genes that are expressed in that cell. The genes not used by that cell are not expressed. But I could not go straight out and say “all the genes that are expressed in a cell are expressed in a circadian pattern”, because I had no data to support such a notion. Until yesterday.
What happened yesterday?

Continue reading

Healthcare 100

Here is the ranking of Top 100 (actually top 176) blogs that cover medicine, nursing and healthcare. Check it out.

ClockQuotes

Animals have these advantages over man: they never hear the clock strike, they die without any idea of death, they have no theologians to instruct them, their last moments are not disturbed by unwelcome and unpleasant ceremonies, their funerals cost them nothing, and no one starts lawsuits over their wills.
– Franois Marie Arouet (Voltaire)

Blogrolling for Today

Deception Blog

Furious Seasons

Cumbrian Sky

JeffsBench – Curtis’s blog

Marios’ Entangled Bank

A Knowble Blog

Nurses…In…Space!!!

Change of Shift: Volume 1, Number 26 is up on Nurse Ratched’s Place.
Carnival of Space #7 is up on Star Stryder.

Timing of duration of protein activity – a molecular clock or timer?

This article, of course, got my attention:
Clocking In And Out Of Gene Expression

Using steroid receptor coactivator-3 (SRC-3), they demonstrated that activation requires addition of a phosphate molecule to the protein at one spot and addition of an ubiquitin molecule at another point. Each time the message of the gene is transcribed into a protein, another ubiquitin molecule is chained on. Five ubiquitins in the chain and the protein is automatically destroyed.
“It’s built-in self destruction,” said O’Malley. “It prevents you from activating a potent factor in the cells that just keeps the clock running and the gene continuing to be expressed.” In that scenario, the result could be cancer, too much growth or an abnormal function.
“It means there’s a fixed length of time that the molecule can work. When it’s activated, it’s already preprogrammed to be destroyed. The clock’s running and each time an ubiquitin is added, it is another tick of the clock.”

So, it is a five-step ‘hourglass’ timer of sorts, which I would not, for he fear of confusion, imprecisely call a ‘clock’. A clock ends a cycle at the same state at which it begins, so the cycle can spontaneously repeat. An hourglass timer has a beginning and an end, and does not spontaneously restart the cycle.

Sexual Activity Reported In Dreams Of Men And Women

I wonder if this new study was designed better than this one:

In a detailed study that served to investigate the actual nature and content of sexual dreams across a large sample of dream reports from men and women, approximately eight percent of everyday dream reports from both genders contain some form of sexual-related activity.
The percentage of women that reported such dreams can be due to the fact that either women actually experience more sexual dreams now than they did 40 years ago, or that they now feel more comfortable reporting such dreams due to changing social roles and attitudes, or both, according to new research.
The study, authored by Antonio Zadra, PhD, of the Universite de Montreal, focused on over 3,500 home dream reports collected from men and women. Sexual intercourse was the most common type of sexual dream content, followed by sexual propositions, kissing, fantasies and masturbation.
The study found that both men and women reported experiencing an orgasm in about four percent of their sexual dreams. Orgasms were described as being experienced by another dream character in four percent of the women’s sexual dreams, but in none of the male dream reports. Current or past partners were identified in 20 percent of women’s sexual dreams, compared to 14 percent for men, and public figures were twice as likely to be the object of women’s sexual dream content. Multiple sex partners were reported twice as frequently in men’s sexual dreams.
“Observed gender differences may be indicative of different waking needs, experiences, desires and attitudes with respect to sexuality,” said Zadra. “This is consistent with the continuity hypothesis of dreaming which postulates that the content of everyday dreams reflects the dreamer’s waking states and concerns — that is, that dream and waking thought contents are continuous.”
An abstract of this research was presented June 14 at SLEEP 2007, the 21st Annual Meeting of the Associated Professional Sleep Societies.

Birds Are In Trouble!

An interesting paper came out last week in PLoS-Biology: Projected Impacts of Climate and Land-Use Change on the Global Diversity of Birds by Walter Jetz, David S. Wilcove and Andrew P. Dobson. You can view some bloggers’ responses on The DC Birding Blog, Field Of View and Living the Scientific Life and media coverage here, here and here.
The authors of the paper collected information about all known ranges of land birds and made a mathematical model for predicting how those ranges will be affected by global warming on one hand and the land-use on the other by years 2050 and 2100. They use four Millennium Ecosystem Assessment scenarios. Two of those scenarios assume a global response to environmental problems and two assume a local (fragmented) response. Also, two of them assume a proactive approach to environmental threats, while the other two predict that most problems will be dealt with reactively, i.e., after they happen.
The results differ between scenarios, but even under the best scenario, a strikingly large number of bird species are predicted to lose substantial proportions of their ranges, likely leading to their eventual extinction. Depending on the scenario, approximately 400 (of the 8750 species studied – they omitted seafaring and coastal species) will lose half or more of their range by 2050. That number may increase to 900-1,800 species by 2100.
The main message of the paper is that global warming will disproportionately affect species in higher latitudes, while the land-use will be more detrimental to the tropical species. Why?
In the tropics, there are many species of birds competing for local resources. How do they partition those resources? In one (or both) of two ways: one is to become specialists, e.g., to nest and feed on particular local plants; the other is to divvy up the territory through competitive exclusion. As a result of both of these mechanisms, the tropical species tend to cover very small ranges and, thus, have rather small population sizes to begin with. Clear-cutting a patch of forest may entirely wipe out the range of a local species which, when displaced elsewhere into the neighboring woods, will not be able to compete against the local tenants and will likely go extinct.
In the higher latitudes, the number of species is smaller, the ranges are larger and the population numbers are greater. Here, effects of global warming on the plants will have a greater effect on the range-sizes than land-use (this is for the most part already developed world not in a frenzy of clear-cutting forests any more). As a result, the ranges will become more fragmented and patchy, which can lead to extinction of some species.
The authors are quite upfront about the limits and underlying assumptions of their model, particularly the assumption that avian ranges will remain static, i.e., that the birds will not move their ranges to higher latitudes and/or altitudes. It has already been well documented that birds (as well as other organisms, e.g., insects, plants, mammals and fish) are in fact responding to global warming by changing their ranges: some are gradually moving to higher latitudes (i.e., in the Northern hemisphere, their ranges are shifting North), some retain their breeding grounds while shifting their migratory routes to different wintering grounds, while others are abandoning migration altogether.
Of course, as authors note, land-use and global warming are interconnected: clearing forests increases the albedo of the area so more of the Sun’s energy is absorbed instead of being reflected back out into space. The agricultural use of chemicals and their runoff into the oceans kills dinoflagellates which perform about half of Earth’s CO2 absorption and O2 release (the clear-cut rainforests provided the other half). At the same time, global warming affects human populations and activity, introducing droughts into already poor areas, thus motivating further destruction of forest in order to provide agricultural land.
Let’s assume that there is a fifth scenario, the most pessimistic one, that assumes there will be no response to environmental troubles at all, or too little too late (i.e., let me play an Alarmist here). Thus, both clear-cutting and global warming continue at the current rate. What will happen? According to the model in this paper, land-use will result in destruction of habitat in the tropics and poor countries, leading to mass extinction of local, small-area/small-population avian species. Global warming will bring in the droughts into the areas at higher latitudes, changing the nature of the plant cover, fragmenting the species ranges and leading to at least local extinctions of many more avian species in currently temperate zones.
But, if we reinstate the fact that avian species will move their ranges, what will be the result? In the tropics, there is not much place to move – the specialists have to stay where their host plants and food are. If they try to move, they will encounter different vegetation, different avian competitors who are better adapted to the local conditions, and different predators they are unfamiliar with. In other words, tropical birds have nowhere to go.
In the temperate zones, birds will shift their ranges to higher latitudes and, if we do nothing about global warming, will in the end, all end up at the ends of their continents. The narrow strips of the northernmost coasts of Europe, Asia and North America will become grounds for ferocious competition for limited resources between all those immigrant species. Many will go extinct. Others will survive at small ranges in small populations. There is nowhere else to go, as by this time, there will be no more
Arctic to fly to – it will be all ocean after the Arctic ice melts.
In the Southern hemisphere, the birds of South America may island-hop to and spread across the new lush tropical forests of Antarctica, but the birds of Africa, Australia and Pacific islands will not be able to make such a big leap and will concentrate on the southernmost edges of their continents until many of them go extinct due to competition.
And even this bleakest scenario makes an assumption that makes the picture look prettier. Species cannot just get up and go and move their ranges with no consequences. Species are parts of their local ecosystems. In those ecosystems, some species will shift their ranges faster, some slower, some not at all (changing the timing of annual events instead, i.e., adapting in time instead of space). The predators and prey will leave each other – the former trying to adapt to new prey, the latter trying to avoid new predators. The flowers and pollinators will split their ways. The mutualists may part ways as well. The remodeling of ecosystems will occur, i.e., we cannot expect entire intact ecosystems to migrate to higher latitudes in synchrony. Disruption of ecosystems by such remodeling will certainly lead to extinctions of numerous organisms, way before they reach the edges of their continents.

BirdBlogging of the Fortnight

I and the Bird #51 is up on Birdchaser. If you answer 20 questions correctly, you may win a nice prize!

My Picks From ScienceDaily

Why Was The Racehorse Eclipse So Good?:

Scientists from the Royal Veterinary College and the University of Cambridge are researching what made the undefeated 18th Century horse, Eclipse, such a great champion. The genetics research is giving insights into the origins of the world’s thoroughbred racing stock, including the sensational 1867 Derby winner, Hermit.

‘Divorce’ Among Galapagos Seabirds Investigated:

Being a devoted husband and father is not enough to keep an avian marriage together for the Nazca booby, a long-lived seabird found in the Galapagos Islands off the coast of Ecuador.

Biologists Unravel The Genetic Secrets Of Black Widow Spider Silk:

Biologists at the University of California, Riverside have identified the genes, and determined the DNA sequences, for two key proteins in the “dragline silk” of the black widow spider — an advance that may lead to a variety of new materials for industrial, medical and military uses.

…and much more good stuff under the fold…

Continue reading

ClockQuotes

The first day of spring was once the time for taking the young virgins into the fields, there in dalliance to set an example in fertility for Nature to follow. Now we just set the clock an hour ahead and change the oil in the crankcase.
– Elwyn Brooks White

Sleep News

More stuff from SLEEP 2007, the 21st Annual Meeting of the Associated Professional Sleep Societies:
Sleep Deprivation Affects Eye-steering Coordination When Driving:

Driving a vehicle requires coordination of horizontal eye movements and steering. Recent research finds that even a single night of sleep deprivation can impact a person’s ability to coordinate eye movements with steering.

Extra Sleep Improves Athletes’ Performance:

Athletes who get an extra amount of sleep are more likely to improve their performance in a game, according to recent research.

Going To Bed Late May Affect The Health, Academic Performance Of College Students:

College students who go to bed late are more likely to have poor quality sleep, which may affect their mental health and academic performance, according to new research.

Safety And Well-being Of Medical Interns And Patients At Risk From Extended Duration Work Shifts:

Working an extended duration shift can pose a risk to not only the safety and well-being of medical interns, but also to that of their patients, according to a recent research.

Sleep-related Breathing Disorder Common Among Aggressive, Bullying Schoolchildren:

Aggressive behavior and bullying, common among schoolchildren, are likely to have multiple causes, one of which may be an undiagnosed sleep-related breathing disorder (SRBD), according to recent research.

Late Weekend Sleep Among Teens May Lead To Poor Academic Performance:

Teenagers who stay up late on school nights and make up for it by sleeping late on weekends are more likely to perform poorly in the classroom. This is because, on weekends, they are waking up at a time that is later than their internal body clock expects. The fact that their clock must get used to a new routine may affect their ability to be awake early for school at the beginning of the week when they revert back to their old routine, according to new research.

Sleep Deprivation Can Lead To Smoking, Drinking:

Sleep loss or disturbed sleep can heighten the risk for adolescents to take up smoking and drinking, two habits that may prove to be detrimental to their health, according to recent research.

Children’s Brain Responses Predict Impact Of Sleep Loss On Attention:

The brain responses of those children who don’t get enough sleep can accurately predict the impact sleep loss has on their ability to pay attention during the course of a day, according to a recent research.

Snoring Children: Poor Sleep Hygiene In Children Associated With Behavioral Problems:

A snoring child’s poor sleep hygiene habits can have a negative influence on his or her daytime behavior, according to a new study.

Chronic Sleep Restriction Negatively Affects Cardiac Activity:

Chronic sleep restriction has a negative effect on a person’s cardiac activity, which may elevate the risk of cardiovascular disease and mortality, according to a research abstract presented at SLEEP 2007, the 21st Annual Meeting of the Associated Professional Sleep Societies (APSS).

Sleep Deprivation Is Common Among Members Of The US Marine Corps:

Members of the U.S. Marine Corps (USMC) experience combined stressors, including physical exertion and the threat of enemy fire. A research abstract that presentedJune 13 at SLEEP 2007, the 21st Annual Meeting of the Associated Professional Sleep Societies, finds that sleep deprivation, which can result in fatigue, is another factor that can impair troops’ vigilance and decision-making with potentially dangerous consequences.

Catastrophic Events Can Affect A Person’s Sleep:

A significant disruption of day-to-day life can take place in those areas affected by a natural disaster. One of the more recent disasters occurred when Hurricane Katrina struck the Gulf Coast in late August 2005, causing loss of lives, extensive damage, and the evacuation of hundreds of thousands of residents. Disasters such as Hurricane Katrina are more likely to affect the quality and the quantity of a person’s sleep, according to recent research.

Previously

EduBlogging of the week

The 123rd edition of The Carnival of Education is up on The Education Wonks.
The latest Carnival of Homeschooling is up on Kris’ Eclectic Homeschool.

Behavioral Biology Blog has moved

Matt at Berkeley has just moved his Behavioral Biology Blog from the old URL to a new URL. Please change your bookmarks, blogrolls and feeds accordingly.

The Open Laboratory and science blogging

Attila (read the entire transcript of our chat) alerted me to a new book review of ‘The Open Science 2006‘ science blogging anthology.
MC and Reed have already blogged about the review.
Let me know what you think. And keep the submissions for the 2007 edition flowing in.

Doesn’t reading about this make you salivate?

cockroach.jpgProbably not. You are not one of Pavlov’s dogs, after all. Or a Pavlov’s cat for that matter. Or a Pavlov’s sea slug. But, see what’s your salivary response to reading a brand new paper on Pavlov’s cockroaches and report your findings in the comments.

The Headline of the Week

“Fine in practice, but how does it work in theory?”

This headline (in a French paper, of course), prompted Sally Green to pen a fine, fine post – an Obligatory Reading of the Day – about class, education, the psychology of class, the difference between academia and the real world, the difference between theory and practice, and the difference between the people who fight for the equality of opportunity and the people who oppose it (and their rhetoric).

Gigantoraptor!

China finds new species of big, bird-like dinosaur:

Eight meters (26 ft) long and standing at twice the height of a man at the shoulder, the fossil of the feathered but flightless Gigantoraptor erlianensis was found in the Erlian basin in Inner Mongolia, researchers wrote in the latest issue of Nature.
The researchers said the dinosaur, discovered in April 2005, weighed about 1.4 tonnes and lived some 85 million years ago.
According to lines of arrested growth detected on its bones, it died as a young adult in its 11th year of life.
What was particularly surprising was its sheer size and weight because most theories point to carnivorous dinosaurs getting smaller as they got more bird-like.
“It had no teeth and had a beak. Its forelimbs were very long and we believe it had feathers,” Xu Xing at the Chinese Academy of Sciences’ Institute of Vertebrate Paleontology & Paleonanthropology said in a telephone interview.
Through analyzing its skeleton, the researchers believe the Gigantoraptor shared the same ancestor and belonged to the same family as the Oviraptor.

gigantoraptor.jpg
Read the whole thing….
Update: Grrrrl, PZ and NYTimes have more info.
Laelaps, Laelaps again, Tetrapod Zoology and The Hairy Museum of Natural History have more.

Sleep News

Children With Sleep Disorder Symptoms Are More Likely To Have Trouble Academically:

Students with symptoms of sleep disorders are more likely to receive bad grades in classes such as math, reading and writing than peers without symptoms of sleep disorders, according to recent research.

Slow Wave Activity During Sleep Is Lower In African-Americans Than Caucasians:

Slow wave activity (SWA), a stable trait dependent marker of the intensity of non-rapid eye movement (NREM) sleep, is lower in young healthy African-Americans compared to Caucasians who were matched for age, gender and body weight, according to recent research.

Sleep Disorders Highly Prevalent Among Police Officers:

A sampling of police officers shows a high incidence of sleep disorders among the members of this profession. Sleep disorders are common, costly and treatable, but often remain undiagnosed and untreated. Unrecognized sleep disorders adversely affect personal health and may lead to chronic sleep loss, which, in turn, increases the risk of accidents and injuries. These problems are exacerbated in shift workers such as police officers, who may experience chronic sleep loss due to their schedules. A sampling of police officers shows a high incidence of sleep disorders among the members of this profession, according to recent research.

Sleep Restriction Affects Children’s Speech:

Research examining the impact of sleep in school-age children suggests that even mild sleep loss produces marked deficits in their cognitive development and functioning. Sleep restriction can alter children’s initial stages of speech perception, which could contribute to disruptions in cognitive and linguistic functioning — skills necessary for reading and language development and comprehension, according to recent research.

Link Between Common Sleep Disorder And High Blood Pressure Discovered:

An international team of researchers, led by Emory University clinician scientists, has found evidence that people suffering from moderate to severe cases of restless legs syndrome (RLS) are at significantly increased risk for developing hypertension.

Patient Care Improves When Medical Residents Work Fewer Hours:

When medical residents work shorter hours, fewer patients are transferred to intensive care and there are not as many interventions by pharmacists to avoid errors in medication, according to a Yale School of Medicine study in Annals of Internal Medicine.

Sleep Problems May Affect A Person’s Diet:

Sleep problems can influence a person’s diet. Those who don’t get enough sleep are less likely to cook their own meals and, instead, opt to eat fast food. It is the lack of nutritional value of this restaurant-prepared food that may cause health problems for these people in the long-run, according to new research.

CPAP Improves Sleep In Patients With Alzheimer’s Disease, Sleep-related Breathing Disorder:

Patients with both Alzheimer disease and a sleep-related breathing disorder (SRBD) experience disrupted sleep, resulting in increased nocturnal awakenings and a decreased percentage of REM sleep. However, in another example of the effectiveness of continuous positive airway pressure (CPAP), CPAP has been found to reduce the amount of time spent awake during the night, increase the time spent in deeper levels of sleep, and improve oxygenation, according to a recent study.

Parenting

There are a lot of people blogging about their kids. But when Kate writes about parenting issues, it is pure science. After attending a meeting on parental behavior, she’s been churning out post after post on this fascinating topic:
Cheetah Infidelity and the Bruce Effect
Bird brains and sex reversal
Thanks, Dad – the paternal brain and his selfish genes
Thanks, Dad – footage of a paternal eagle
Perhaps there will be more over the next few days, so stay tuned…

A nice day in Chapel Hill

The other day, Anton Zuiker and I met at Weaver Street Market in Southern Village to do some planning for the Science Blogging Conference and Anton took this picture of me holding the brand new promotional postcards (want one? e-mail me) that he has designed and printed:
Bora%20at%20Weaver%20Street%20Market.JPG

Garden-Variety Experiment

Literally. If you want to know how to figure out what your slug has eaten today, just ask Aydin.

ClockQuotes

No Time, spoke the clocks, no God, rang the bells,
I drew the white sheet over the islands
And the coins on my eyelids sang like shells.

– Dylan Thomas

Look! There’s a hole in your head!

The history of trepanation. An utterly amazing post!
And, Bioephemera posted an appropriate illustration to go with it….

New SciBling and other science blogging news

Sheril Kirshenbaum has officially joined Chris Mooney on “The Intersection” (the first science blog I have ever seen in my life, almost three years ago). Hey, one more North Carolina SciBling can’t hurt!
Inkycircus has moved: The Brit ScienceBlogging Trio Fantasticus has moved from here to here. Fix your blogrolls, bookmarks and feeds.

Congratulations Ruby!

About a month ago, Ruby Sinreich quit her job and posted about looking for a new one. And today, she reveals that she landed a perfect job, telecommuting from Carrboro, working for the Fellowship of Reconciliation. They were smart to hire her!

My Picks From ScienceDaily

Lizard Moms Dress Their Children For Success:

Mothers know best when it comes to dressing their children, at least among side-blotched lizards, a common species in the western United States. Researchers at the University of California, Santa Cruz, have found that female side-blotched lizards are able to induce different color patterns in their offspring in response to social cues, “dressing” their progeny in patterns they will wear for the rest of their lives. The mother’s influence gives her progeny the patterns most likely to ensure success under the conditions they will encounter as adults.

Bird Song Study Gives Clues To Human Stuttering:

Researchers at the Methodist Neurological Institute (NI) in Houston and Weill Cornell Medical College in New York City used functional MRI to determine that songbirds have a pronounced right-brain response to the sound of songs, establishing a foundational study for future research on songbird models of speech disorders such as stuttering.

Trade Protection Denied For Two Shark Species Prized For Fins, Says World Wildlife Fund:

Two shark species highly prized for their meat and fins have not gained trade protection under CITES, the Convention for International Trade in Endangered Species of Wild Fauna and Flora, say World Wildlife Fund and TRAFFIC.

Physicist Cracks Women’s Random But Always Lucky Choice Of X Chromosome:

A University of Warwick physicist has uncovered how female cells are able to choose randomly between their two X chromosomes and why that choice is always lucky.

Color Pattern Spurs Speciation In Tropical Fish:

A team of researchers from McGill University and the Smithsonian Tropical Research Institute (STRI) has provided the first example of how colour patterns on a coral reef fish species can drive its evolution into many distinct species.

Massive Herds Of Animals Found To Still Exist In Southern Sudan:

Aerial surveys by the New York-based Wildlife Conservation Society confirm the existence of more than 1.2 million white-eared kob, tiang antelope and Mongalla gazelle in Southern Sudan, where wildlife was thought to have vanished as a result of decades-long conflict. Despite the war, some species of wildlife in Southern Sudan, last surveyed more than 25 years ago, have not only survived but have thrived east of the Nile River in numbers that rival those of the Serengeti.

Rove Beetles Act As Warning Signs For Clear-cutting Consequences:

New research from the University of Alberta and the Canadian Forest Service has revealed the humble rove beetle may actually have a lot to tell us about the effects of harvesting on forests species. Rove beetles can be used as indicators of clear-cut harvesting and regeneration practices and can be used as an example as to how species react to harvesting. It has been found that after an area of forest was harvested, the many forest species, including rove beetles, decreased dramatically. As the forest regenerated, it never fully replicated the full characteristics of the older forest it replaced.

International Carnival of Pozitivities

An e-mail from Ron Hudson just popped up in my mailbox:

Dear Friends of the International Carnival of Pozitivities (ICP):
The 13th consecutive and first edition of Year Two of the ICP will be hosted at ScribeSpirit eZine. We, myself and the hosts Jody and Jolen, are now seeking submissions for this first edition of the new year.
Please visit our last edition and the ICP Homepage to read the details of this project. All twelve existing editions are available via links from the homepage.
If you are living with, working to treat or cure, or concerned about HIV/AIDS and its potential effects on your loved ones, yourself or others, then consider adding your voice to the conversations about this disease. At the very least, please talk about HIV/AIDS among your peers and help us eliminate the stigma that so many of us in this community experience. Want to do more? Write up the story of your life with HIV/AIDS, tell about a loved one or friend who is your hero, or simply write how you feel about this topic. You can contribute anonymously, although our aim is to put a face on this illness and to live without shame and guilt for carrying a virus in our bodies. The more open, honest and genuine you can be, the more powerful your message.
We accept written testimonials, video, music, poetry, original artwork or anything else that might shed light on life with HIV/AIDS and its treatment. All of the work for the ICP is based on the idea of volunteerism. It is, in fact, a social experiment of sorts to show that through compassion and generosity, we can all gain more than what we put into life. If we care, we can make things happen on an international grassroots level without need for financial gain. If we simply take that first step of sharing, how powerful can we be? I hope that you will consider conquering fear. I hope that you can help us face our lives as the opportunities to promote compassion that they are rather than succumbing to our multi-culture of fear and stigma. We all need inspiration. Will you be inspiring?
As always, I must ask as well if you would like to host the blog carnival on your own website or blog. The ICP homepage has the schedule for future editions and a link to email me to volunteer. Any mention or permanent links added to your blogs and sites to promote the ICP will be appreciated. Feel free to forward this email to your friends as an invitation to join our community.

We’re All Journalists Now

Scott Gant is on NPR’s Diane Rehm show right now, valiantly defending bloggers from grouchy journalists. They will have a podcast up later.

Sleep News

Sleep Deprivation Affects Airport Baggage Screeners’ Ability To Detect Rare Targets:

A lack of sleep may affect the performance of airport employees, which can, in turn, compromise the safety of airline passengers. Sleep deprivation can impair the ability of airport baggage screeners to visually search for and detect infrequently occurring or low prevalence targets that may ultimately pose a threat to an airline and its passengers, according to new research.

Night Shift Nurses More Likely To Have Poor Sleep Habits:

Nurses who work the night shift are more likely to have poor sleep habits, a practice that can increase the likelihood of committing serious errors that can put the safety of themselves as well as their patients at risk, according to recent research.
Arlene Johnson, of the University of Alabama at Birmingham, surveyed 289 licensed nurses while they were working on the night shift in the hospital setting, and classified the subjects as either sleep deprived or not sleep deprived. The results showed that 56 percent of the sample was sleep deprived.

ClockQuotes

A minister has to be able to read a clock. At noon, it s time to go home and turn up the pot roast and get the peas out of the freezer.
– Garrison Keillor

Texans to drill for oil at the World Heritage Site in Sicily.

Skeptical Alchemist has the whole story.
Sign the petition to prevent the drilling.

Blogrolling for Today

Interprete

Biological Ramblings

A Passion For Nature

Life in the Bristolwood

Dragonfly Eye

Mary’s View

The Winding Path

Obligatory Reading of the Day – the Experimental Darwin

Darwin did not just sail on the Beagle and then settle down in his armchair and think for the rest of his life. He performed an amazing number of very creative experiments. Afarensis has been writing about them for a while now and I hope you are following his series every week.

Teaching tonight

Physiology: Coordinated Response
Blogging resumes later tonight….

My Picks From ScienceDaily

Ancient DNA Traces Woolly Mammoth’s Disappearance:

Some ancient-DNA evidence has offered new clues to a very cold case: the disappearance of the last woolly mammoths, one of the most iconic of all Ice Age giants, according to a recent article. DNA lifted from the bones, teeth, and tusks of the extinct mammoths revealed a “genetic signature” of a range expansion after the last interglacial period. After the mammoths’ migration, the population apparently leveled off, and one of two lineages died out.

For more, see this and this.
Scientists Propose The Kind Of Chemistry That Led To Life:

Before life emerged on earth, either a primitive kind of metabolism or an RNA-like duplicating machinery must have set the stage – so experts believe. But what preceded these pre-life steps? A pair of UCSF scientists has developed a model explaining how simple chemical and physical processes may have laid the foundation for life. Like all useful models, theirs can be tested, and they describe how this can be done. Their model is based on simple, well-known chemical and physical laws.

The Fisherman Is A Predator Like Any Other:

For Peru fishing is a prime source of foreign exchange, second only to mining. The country’s anchovy fishing fleet, which seeks the Peruvian anchovy Engraulis ringens, is the world’s largest single-species fishery, with an average of 8% of global landings. For safety and monitoring purposes, vessels have the statutory obligation to be equipped with satellite geopositioning indicators, seeing that industrial-scale fishing is prohibited within a band of 5 nautical miles (about 9 kilometres) from the coast. This satellite device, the vessel monitoring system (VMS), gives the real-time position of the vessels to an accuracy of 100 m, communicated to bodies responsible for vessel movement recording and scientific monitoring of fishing.

The Insect Vector Always Bites Twice:

The reality of the threat from vector-borne diseases has been recognized and the problem is prompting research scientists to take a strong interest. Most of these infections, classified as emerging or re-emerging diseases, are linked to ecosystem changes, climatic variations or pressure from human activities. Malaria, sleeping sickness and so on lead to the death of millions of people in the world. African countries are particularly strongly hit. The expansion of Dengue fever and the recent epidemics of Chikungunya and West Nile disease illustrate the trend.

ClockQuotes

I work until beer o’clock.
– Stephen King

Obligatory Reading of the Day – Sponges and Synapses

The best coverage of the paper so far:
Neurophilosophy
Pharyngula
Lab Notes
Dispatches from the Culture Wars

Science Blogging Conference

2008NCSBClogo200.pngI don’t have to remind you every day, but behind the scenes, we are busily working on the organization of the 2nd Science Blogging Conference. The organizing committee is meeting on Thursday and I’ll report on any news and updates then. The new wiki is almost all set up (and it will be updated on Thursday as well).
One of the pages we have not moved yet from the old to the new wiki is this one, a list of resources for finding science blogs, as well as a list of blogs that showcases the diversity of the scientific blogosphere and serves as an entry point into it without being too intimidatingly long and comprehensive. So yes, the list is totally subjective. I picked a number of blogs I know well that are as different from each other as possible so there is something there for everyone. The target audience are conference participants who are not familiar with science blogs, but are interested to find out more. So there is a small sampler for them.
I’ve been working on the list a little bit last night until I got tired and went to bed. Now, I’d like to ask you to help me, not by adding another gazillion science blogs, but by suggesting perhaps a dozen top medical blogs that are not already on the list. The medical blogosphere is rapidly expanding and I am not able to follow it as closely as I did before. I also am aware that several prominent medbloggers have recently stopped blogging (and perhaps restarted?). So, help me out, either in the comments here, or directly by editing that wiki page.
Also, did I miss any of the carnivals (bottom of the page), aggregators, or good articles about science blogging?
Finally, let me use this post for my monthly reminder to nominate posts, your own or other bloggers’, for the 2nd science blogging anthology. Use this online form. And go here to pick up the code that can help you spread the word about it.

The Iron Science Teacher

I love Iron Chef (on those rare occasions when I watch it, but I did more in the past), so I am excited about this spin-off – the Iron Science Teacher:

Parodying the syndicated, tongue-in-cheek, cult Japanese TV program, Iron Chef, the Exploratorium’s Iron Science Teacher competition showcases actual Bay Area science teachers as they build experiments around a given “secret ingredient” — an everyday item such as a paper-towel tube, a straw or a soda can. According to astrophysicist Dr. Linda Shore, Director of the Exploratorium Teacher Institute and host of the competition, “We try to show we can do science with anything. We show teachers how to use low-tech materials to illustrate classic principles of science and math.” As contestant Don Rathjen summed up, “This helps teachers teach the $10 million state science standards on a $10 budget.”
After building the gizmos, the teachers have a few minutes to explain what they are and the scientific principles they demonstrate. Judging is done on a less scientific basis, using what Dr. Shore refers to as “the clap-o-meter” — audience applause as measured by the human ear.
In one competition where the secret ingredient was a soda can, the diversity of science activities based on a simple object became clear. Using soda cans, a mathematician demonstrated the X, Y, and Z-axes of geometric shapes, a physicist illustrated the Bernoulli Effect (which affects such things as lift on an airplane’s wing), a biologist demonstrated that Classic Coke is denser than Diet Coke, and a chemist rigged up alcohol burners.
Given the popularity of the Iron Science Teacher competition, the Exploratorium is bringing science to teachers nationally via the World Wide Web.
The Exploratorium Teacher Institute provides teacher development for middle and high school science and mathematics teachers in the form of intensive summer long workshops and follow-up programs through the school year. There are currently 3000 alumni of the Teacher Institute, funded by the National Science Foundation, the State of California, the William and Flora Hewlett Foundation, the Noyce Foundation and the Eisenhower Program.

The event will take place on June 29, July 6, 13, and 20, and August 3, 10 in the Bay Area, so I may be able to go and watch two or three of those in person (and liveblog it!). For more information, check the Iron Science Teacher website and watch their Web Cams.

Obligatory Reading of the Day

All you need to know about Philosophy of Science (but were too afraid to ask) you can read in John Wilkins’ triptych:
Philosophy is to science, as ornithologists are to birds: 1. Introduction
Philosophy is to science, as ornithologists are to birds: 2. Two topics of philosophy of science
Philosophy is to science, as ornithologists are to birds: 3. Science is a Dynamic Process