Reverend William Paley’s Circadian Clock

Reverend William Paley's Circadian ClockAn oldie but goodie (June 12, 2005) debunking one of the rare Creationist claims that encroaches onto my territory.

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SBC – NC’07

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Emile Petrone is coming to the 2007 North Carolina Science Blogging Conference. Are you?
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EduBlogging of the week

The 93rd Carnival of Education is up on What It’s Like on the Inside.
The 46th Carnival of Homeschooling is up on Sprittibee.

Is he going to do it again?

Back in 2003, John Edwards announced his presidential candidacy on The Daily Show with John Stewart. Well, he’ll be there again tonight – watch it! Will he do the same thing again?
Update: No, he didn’t. But he said to watch his website over the next few weeks.
Update 2: Apparently, the appearance on the show moved some people to like him more and pay more attention to him. Shakespeare’s Sister is one, which makes me very happy. Read what she said.

Abducted by Aliens! Fundie Aliens!

Yikes! This was here in my neighborhood, in Winston-Salem, NC! Poor guy – did he get an education! What does he think about America now?
My Half-Year of Hell With Christian Fundamentalists:

When Polish student Michael Gromek, 19, went to America on a student exchange, he found himself trapped in a host family of Christian fundamentalists. What followed was a six-month hell of dawn church visits and sex education talks as his new family tried to banish the devil from his soul. Here’s his story.

Read the whole thing – it is an incredible story. The family’s whole purpose in taking him in was to recruit him to work on the building of a Baptist Church in Poland! How brazen!
(Thanks to The Science Pundit for the tip)

Green Grounds

53rd edition of the Carnival of the Green is up on Triplepundit.
Grand Rounds – the Monty Python edition – is up on The rumors were true.

Home: The Blueprints of Our Lives

Home: The Blueprints of Our Lives, new book by Sen.John Edwards hit the bookstores today (I can’t afford it right now but it is on my wish list for later). You can read an excerpt here, check the dates and places for his booksigning tour, see the schedule for his media appearances (lots of them, including The Daily Show and Letterman) here and discuss it here.

SBC – NC’07

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The 2007 North Carolina Science Blogging Conference is now listed on Confabb and the contents there will be filled over the next few days (I think).
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The Saga of the Bosnian Pyramid

The Saga of the Bosnian PyramidYou may have heard about the crazy “discovery” of a pyramid in Bosnia, the scientific nonsense about it and the political heat it provoked. I have covered the story last winter and spring in a lot of detail (see my posts from December 07, 2005, January 30, 2006, April 17, 2006, April 22, 2006, April 29, 2006, May 02, 2006, May 07, 2006, May 13, 2006, May 16, 2006, June 02, 2006 and June 07, 2006), but have lost touch since then. And a lot of stuff happened in the meantime. The members of the Anti-Pyramid Webring have been pursuing the story with vigor and I’ll try to catch up with them and write a summary of the news and views within the next week or two (almosty all of their work is in one variant or another of Serbian/Croatian/Bosnian language so I’ll have to do some translating). In the meantime, to get you all up to speed, here are the re-posts of all of my earlier coverage – lots of links for your enjoyment:

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World Science

* Cleansing nuclear fallout from the body:
A U.S. government scientist envisions purging the body of fallout with a compound from crab shells.
* Gay men likelier to gamble addictively, study suggests:
A small study may fuel a charged debate over why homosexuals, as growing evidence suggests, suffer addictions unusually often.
* Saturn moon found to resemble Earth at life’s birth:
Hazy skies on early Earth, similar to those on Saturn’s moon Titan, could have provided the ingredients for life, chemists say.
* Mystery of sudden infant deaths may be solved:
“Sudden infant death syndrome” results from abnormalities in the brain stem, a primitive brain region, a study suggests.
* Testosterone levels dropping, research finds:
Scientists cited a “substantial,” unexplained drop in American men’s testosterone levels in the past two decades.

Shermer on Evolution

Michael Shermer has an interview in the latest American Scientist on Creationism and his new book Why Darwin Matters.

SBC – NC’07

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Steve Burnett is coming to the 2007 North Carolina Science Blogging Conference. Are you?
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Playfight

Marbles (left) encroaching on Biscuit’s territory:
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Eight Hours a Circadian Rhythm Do Not Make

Blogging on Peer-Reviewed Research

Eight Hours a Circadian Rhythm Do Not MakeThis post is a relatively recent (May 24, 2006) critique of a PLoS paper.

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SBC – NC’07

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Selby Bateman is coming to the 2007 North Carolina Science Blogging Conference. Are you?
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Aftershocks of Feingold decision

Pam, Lindsay, Scott, Glen and Melissa and all of their commenters passionatelly discuss the effects of Feingold’s decision not to run. I suggest you read what Neil wrote (as well as some of his commenters). I only had a couple of words about it (and my commenters as well) here and here.

Blogs on NPR

On The Media is one of my favourite NPR shows and today I was lucky to be in the car for almost the entire show. Today’s show was very “bloggy”. First, they had a report of the election and mentioned the positive impact of the netroots as well as the way Internet was ahead of CNN et al. in posting results (e.g., in Virginia).
Then, Steve Rubel talked about the way large companies can use blogs to connect with their customers.
Then , they had Marc Lynch of Abu Aardvark on , not as a blogger, or a curiosity, but as an expert – the best person to summarize the responses of Middle-Eastern media to the U.S. elections. I think the interviewer was taken aback a little to hear that Al Qaeda wanted Republicans to win contrary to the MSM “conventional wisdom”, i.e., Republican wisdom.
Then, they had a segment in which they did not mention blogs, but the topic is a hot one in the blogosphere perhaps because it is triggered by the way bloggers write – the question of bias. Should MSM journalists openly show their affiliations/biases/leanings or should they try, at all costs, to preserve the appearance of fairness and balance, i.e., should they continue to play the game of ‘he-said-she-said’ and always present two sides to every issue even when one side is clearly wrong?
If that is not enough, Matt Hill Comer will be on State of Things tomorrow at noon and 9pm. Matt has all the info.

2008

Media is already handicapping the Presidential election. As you may expect, I really like this article. Now that Feingold is out of the race, Edwards is the leftest candidate (since Gore said he’s not running).

NeuroBlogging of the week

The Synapse #11 is up on Developing Intelligence. As expected, I am most excited about this post on Mouse Trap.

Bards Invade The Tar Heel Tavern

Here is another first in the world of blog carnivals – a fusion! Billy is hosting the Tar Heel Tavern (NC blogging) and the Ringing Of The Bards (poetry) all together. It is a virtual visit of blogging poets to North Carolina. Enjoy!

Where is Queen’s English?

What American accent do you have?

Your Result: The Inland North

You may think you speak “Standard English straight out of the dictionary” but when you step away from the Great Lakes you get asked annoying questions like “Are you from Wisconsin?” or “Are you from Chicago?” Chances are you call carbonated drinks “pop.”

The Midland
The Northeast
Philadelphia
The South
The West
Boston
North Central
What American accent do you have?
Take More Quizzes

Although I live in the South, where every vowel is really three vowels strung together (e.g., “ham” is pronounced as “hayam”, and a “bug” is really “boooooog”), I still stick to the standard British English of the kind taught in schools around Europe. This quiz could not uncover this, of course, as it considers only American dialects (how about Aussies?).

Blogrolling: C

Here are some blogs with titles that start with the letter C. Am I missing a good one? Yours? Let me know in the comments.
Also check (now updated) blogs that start with:
Number/Symbol
A
B

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Zell Miller?

An interesting piece of alternative history.

SBC – NC’07

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Kogepon (yup, I know her real name) is coming to the 2007 North Carolina Science Blogging Conference. Are you?
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Russ Feingold…

…is not going to run for President in 2008. A fine man. I am sure he will keep fighting in the Senate for what is good and what is right for the American people.

The Plan

What do you think about David Brin’s ideas:
OKAY, SO NOW WHAT?
What can the House of Representatives do, all by itself? – Step#1
What can the House of Representatives do, all by itself? – Step#2
What can the House of Representatives do, all by itself? – Step#3

Who should run against Elizabeth Dole in 2008?

Chairman of the NC Democratic Party wants to know who would you like to see run against her.

Chemistry blogs

Well, being a biologist and all, I had no idea there were so many chemistry blogs out there! It will take me some time to check them all out.

Art

It is pretty amazing what some people can do with just paper and scissors!

Blogrolling: B

Here are some blogs that start with B:

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SBC – NC’07

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Grace is coming to the 2007 North Carolina Science Blogging Conference. Are you?
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My last on the 2006 election

I agree with Publius’ final assessment of the election. Read it.
I spit my coffee (tea, actually) through the nose when I read this today:

“Sadly, it seems that the Party of Reagan has been hijacked by the neocons, the big government crowd and the pragmatists.”

PRAGMATISTS? Heellllooo?
As Deborah noted when she was calling VA voters, this was not about Iraq, it was about “throwing the bums out”. The word “corruption” that is being banded about is misleading. Corruption was not the top reason for kicking the bums out, courrption is just one of inevitable sub-symptoms of the greater sin of pride, self-grandiosity and the false sense of invincibility of the “we make reality” crowd.
Voters kicked out the incompetents who think that campaigning is the same as governing, that talking is the same as working (they do not know how to work), and that wishful thinking is the same as policy. They voted in the members of the reality-based community in hope that someone will start actually working in this government. They threw out the idealists, not pragmatists. Katrina had a much greater impact than Iraq. And Foley was just a recent reminder of the utter incompetence of the Republican leadership.
But it appears that the Democratic beltway aristocrats have themselves bought into the stupid GOP “face-saving” notion that conservative Democrats won and are planning on purging the party of Dean and abandoning the 50-state strategy. The “conservative” candidates Emanuel showered with millions mainly lost (some of them in the primaries). The netroots-supported candidates that Emanuel did not support (and in some cases actively campaigned against) mostly won or came much closer than deemed possible in some very Red districts. Morons! We have to do everything we can to stop them.
Finally, it’s time to start looking at 2008 and working immediately to mold the public opinion (see the Publius link above) and set the stage for a win then. As John says:

“…..I think the most valuable thing most of could do is to help shape the conventional wisdom. We blog, we write letters to the editor, we talk up our relatives, neighbors, and co-workers. We should try to take down the straight talking St. McCain and the weak-on-defense Democrats narratives. It’s never too soon to start casting doubt on the Republicans we plan to target; broken promises are the most effective critique. And, of course it’s never too soon to start talking up the candidates we support.”

My picks from ScienceDaily

Microbes Compete With Animals For Food By Making It Stink:

Microbes may compete with large animal scavengers by producing repugnant chemicals that deter higher species from consuming valuable food resources, a new study suggests. Ecologists have long recognized microbes as decomposers and pathogens in ecological communities. But their role as classic consumers who produce chemicals to compete with larger animals could be an important and common interaction within many ecosystems, according to a paper published this week in the journal Ecology

Decoded Sea Urchin Genome Shows Surprising Relationship To Humans:

The Sea Urchin Genome Sequencing Project consortium, led by the Human Genome Sequencing Center at Baylor College of Medicine in Houston, announced today the decoding and analysis of the genome sequence of the sea urchin, Strongylocentrotus purpuratus.

Social Exclusion Changes Brain Function And Can Lead To Poor Decision-making:

In new research, reported in the current online issue of the journal Social Neuroscience, researchers from the University of Georgia and San Diego State University report for the first time that social exclusion actually causes changes in a person’s brain function and can lead to poor decision-making and a diminished learning ability.

Tarantula Venom And Chili Peppers Target Same Pain Sensor:

Venom from a West Indian tarantula has been shown to cause pain by exciting the same nerve cells in mice that sense high temperatures and the hot, spicy ingredient in chili peppers, UCSF scientists have discovered.

Research Says Massage May Help Infants Sleep More, Cry Less And Be Less Stressed:

New research by a team at the University of Warwick says that massage may help infants aged under six months sleep better, cry less and be less stressed.

New election rules?

New election rules?
Some ideas from two years ago (August 26, 2004):

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SBC – NC’07

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Michael Good is coming to the 2007 North Carolina Science Blogging Conference. Are you?
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International Carnival Of Pozitivities

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Welcome to the fifth international carnival of pozitivities, blog carnival about HIV and AIDS founded and managed by my friend and neighbor (and great blogger) Ron Hudson.
I have to say that preparing this carnival has been quite an eye-opener for me and that I have learned so much. I feel it would be presumptious of me to write any editorials for today’s entries so I will just list them with brief quotes from each post, but I warmly recommend that you take your time and read each and every post here – perhaps they will be eye-openers for you as well.
Eric Jost of Confessions of a gay male feminist: Is HIV a Gay Disease?

The campaign has garnered a lot of public scrutiny and media attention because of a series of print ads and posters it posted in GLBT-owned and operated businesses. The posters feature the image of a male couple embracing with the tagline, “HIV is a gay disease. Own it. End it.”

Jim Johnson of Straight not narrow: Condi Rice Swears In (gasp!) a Gay Guy!</a

Yep, you could practically hear right-winger’s underwear getting twisted up as those words came out of Rice’s mouth.

Doug Ireland of Direland: THE GLOBAL AIDS CRISIS: PLEASE TAKE 8 MINUTES TO WATCH THIS VIDEO

We wish the AIDS problem would go away. Sometimes, we pretend it has.

Steve Schalchlin of Living In The Bonus Round: A Christianist Columnist Wakes Up?

It’s not going to change. And do you know why? Because justice and fairness for gay people is a moral imperative. Politically, conservative Christianists are simply on the wrong side of history and the wrong side of what’s right and wrong.

Chad Orzel of Uncertain Principles: Unhappy Anniversary

And let’s also applaud, encourage, and most importantly fund the efforts of the people who are working to bring that same security to the rest of the world.

Tara C. Smith of Aetiology: Emerging Disease and Zoonoses #16–the origins of HIV

I mentioned how much you can learn from, well, animal shit. That’s exactly what this study boils down to.

Sandra Porter of Discovering Biology in a Digital World: No, I don’t worry about AIDS anymore

I worry about date rape drugs and my daughters. I worry about young girls in communities that refuse to talk about protection. I feel sad that this epidemic is perpetuated by social mores, ignorance, and sexism.

Shelley Batts of Retrospectacle: A Neuroscience Blog: Where “Thin Means AIDS”; African Women Become Obese

As more and more women are acquiring AIDS in South Africa, a new trend is emerging: in order to not look HIV positive, women are becoming obese in large numbers.

David Ng of terry*: A GAME OF TWENTY QUESTIONS

AMERICAN: Hmm… Can I get it online?
ETHIOPIAN: I’m sorry, sir. I do not understand your meaning, sir. On where, sir?
AMERICAN: Online… You know, like at eBay or Amazon?
ETHIOPIAN: I do not think so, sir. You do not need to go all the way to the Amazon, sir.

Anupam Singhal of The Science Creative Quarterly: HELP, I NEED A VACCINE! (OR H.I.V. FOR SHORT)

Before I met Andrina, I had this mental picture of an HIV-positive African woman who was physically weak and emotionally devastated by the terminal illness with which she was afflicted.

The Dreamer of Nightmare Hall – Welcome to my nightmare: Mangled In The Medical Machine – Part 3

When you’re poz, surgeons don’t want to operate, coming up with every sort of excuse. A nurse I spoke with told me in private that surgeons are the most homo and HIV phobics he’s dealt with. He also said that in his experience they also have this attitude that people with HIV are not worth expending as much energy on as HIV negative patients.

Ron Hudson of 2sides2ron: The Angles of the Mirror

Soon I will need a mask to make myself less ghoulish, but I am lucky now to be passing through a phase where only I and old friends who rarely see me can discern the extent of my wasting.

Ten-K of Save Gay Life: Testing Upheaval

How else could he imagine that today’s medical treatments for AIDS have eliminated HIV stigma? Anyone who has been a victim of stigma knows that stigma is not a function of fact.

Florence Ferreira, guest-posting on 2sides2ron: How to Survive the Doctor’s Office

As in a job interview or negotiation, preserving your power when entering the doctor’s territory takes a proactive approach. It requires psychology and homework.

Vadim of Neweurasia: Tajikistan: HIV/AIDS problem in Tajikistan

Rahmon also says that the labor migrants are considered to be in the group of high risk. They don’t even realize that they have a great risk to be infected.

Jody Kuchar of Grey Matter Flatulence: Condo Cowboys

Apparently the old axiom of believing that people your parents’ age don’t engage in sex still exists among today’s more ‘enlightened’ young people. Given some thought, the fact that AIDS is growing among senior citizens should not be a surprise to anyone.

Carolyn of Texas AIDS Blog: Accountability and World AIDS Day 2006

The concept of accountability is a complex one. It is certainly au courant in the US, being used in one way or another in just about every political campaign we see these days. I’d like to see some exploration of the concept in terms of the current HIV epidemic in Texas.

Connor MacEachern of Where in the world is Connor MacEachern?: Halfway there?

In a country where cheating is a way of life, and AIDS is viewed by some as an inevitability, there is still a long way to go. Much longer than, say, nine years.

Reverend Tom Okeyo Obiero, guest-blogging on 2sides2ron: A Glimpse of AIDS in Kenya

Most people–mothers, wives and children–are infected and affected with the issue of HIV/AIDS in our community. The old are left with young children to feed, clothe and educate while the resourceful people are dying of AIDS. This made me come up with ideas to help these people stop the spread of HIV/AIDS and to see that those who are hurting are getting ways out of their problems.

Wes Fiser and Dr. Wessner of The AIDS Pandemic: The Condom Controversy: religious fundamentalism and the fight against AIDS in Zambia (click on the post title to listen to the podcast)

The condom controversy raises important questions as to the role of NGO involvement in health policy when NGOs are limited by their supporters of the religious right. Are they doing more harm than good in fighting the AIDS pandemic?

Brian of Blogswana: Our Children

Occasionally I come across a slogan, a tagline, or a quote that I really like.

JP of Japundit:Japan’s HIV Problem

One expert says that the number of people who actually have AIDS is four to five times the level being officially reported.

Next edition of the carnival will be in one month from now. Watch the homepage and Ron’s blog for the announcement of the next host.

Perspective, part II

Some more good post-election analysis:
Amanda
Tristero
Tristero
Digby
Digby
Digby
Publius
Melissa
Paul
Echidne
Echidne
John
Neil
Jonathan

Podesta on the election results – The End of the Grand Conservative Experiment

If you have not received the e-mail from the Center for American Progress, it is here, under the fold:

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2008

Just check the Wikipedia for the information on Senate seats up for (re)election in 2008. Democrats should really make a killing then.
You can also check their pages about House races, gubernatorial races and the Presidential election.

The Onion is the best, as always

Politicians Sweep Midterm Elections
Rumsfeld: ‘My Half-Assed Job Here Is Done’
Republicans Blame Election Losses On Democrats
Write-In Candidate Thought He Had Enough Friends To Win
Voter Turnout Reaches All-Time Low Of 17

My picks from ScienceDaily

Two Nerve Cells In Direct Contact:

For the first time, scientists at the Max Planck Institute for Neurobiology in Martinsried near Munich have been able to show how two nerve cells communicate with each other from different hemispheres in the visual center. This astoundingly simple circuit diagram could at a later date provide a model for algorithms to be deployed in technical systems.

A Silent Pandemic: Industrial Chemicals Are Impairing Brain Development Of Children Worldwide:

Researchers found that 202 industrial chemicals have the capacity to damage the human brain, and they conclude that chemical pollution may have harmed the brains of millions of children worldwide.

Why Exercising Muscles Tire When Needed Most:

Fleeing animals, human athletes and non-athletes alike have experienced skeletal muscles giving out during those intense efforts when they are needed most, whether running for survival, the finish line or the bus. While the cause of muscle fatigue has interested to physiologists, engineers and medical experts for more than half a century, the phenomenon remains incompletely understood. A new study from Rice and Harvard universities links failing muscles to the source of the chemical energy util ized to fuel vigorous contractions in the body.

Scientists See With X-rays How Bones Resist Strain Thanks To Their Nano And Micro Structure:

Scientists from Max Planck Institute (Germany) and the ESRF have just discovered the way deformation at the nanoscale takes place in a bone by studying it with the synchrotron X-rays. This study explains the enormous stability and deformability of bones. The hierarchical structure of bones makes them able to sustain large strains without breaking, despite being made of essentially rigid units at the molecular level.

Odor Discrimination Linked To Timing At Which Neurons Fire:

Timing is everything. For a mouse trying to discriminate between the scent of a tasty treat and the scent of the neighborhood cat, timing could mean life or death. In a striking discovery, Carnegie Mellon University scientists have linked the timing of inhibitory neuron activity to the generation of odor-specific patterns in the brain’s olfactory bulb, the area of the brain responsible for distinguishing odors.

Spectacular Dinosaur Skull Comes Back To Alberta:

A “spectacular beast” is coming back to its original stomping grounds and making a new home at the University of Alberta — a coup that will allow its researchers to study the rare dinosaur skull up close.

Regular Exercise Plays A Consistent And Significant Role In Reducing Fatigue:

A new analysis by University of Georgia researchers finds overwhelming evidence that regular exercise plays a significant role in increasing energy levels and reducing fatigue.

Cold War Invisible Ink Secrets Unlocked:

Two Michigan State University researchers are the first to unlock the secrets of the invisible ink used by East Germany’s secret police force, the Stasi, and in the process have mixed a batch of chemistry, history and mystery to teach students.

Happy People Are Healthier, Psychologist Says:

Happiness and other positive emotions play an even more important role in health than previously thought, according to a study published in the journal Psychosomatic Medicine by Carnegie Mellon University psychology Professor Sheldon Cohen.

Children Show Strong Preference For Lucky Individuals:

Children as young as five to seven years of age prefer lucky individuals over the less fortunate, according to new research by psychologists at Harvard University and Stanford University. This phenomenon, the researchers say, could clarify the origins of human attitudes toward differing social groups and help explain the persistence of social inequality.

Female Pronghorns Choose Vigorous Mates; Offspring More Likely To Survive:

When a female animal compares males to choose a mate, she can’t order a laboratory genetic screen for each suitor. Instead, she has to rely on external cues that may indicate genetic quality. Until now, biologists have focused on elaborate ornaments, such as the peacock’s tail, as cues that females might use.

Why Wolves Are Not Dispersing As Fast As Expected In Yellowstone:

The slow dispersal rate of wolves in Yellowstone National Park had stumped researchers across North America until a team of mathematical biologists at the University of Alberta recently solved the puzzle.

Metapolitics

Carnival of the Liberals #25 – the Metapolitical edition – is up on Philosophy, Etc. and Richard has picked some fantastic winners for this week’s carnival.

Retinal cell transplantation restores photoreception

Cell transplant for eyes?

In the current study, the scientists looked at these photoreceptors’ development — from the embryonic stages to those in the newborn. They found that the cells that worked best came from animals between the first and fifth days of life. “Photoreceptors are just being born and starting to make connections,” said Pearson, one of the co-authors of the study, published this week in Nature.
The retinal cells were transplanted in normal adult mice and others with two different types of vision problems that cause blindness. In earlier studies, researchers found that the cells looked like photoreceptors and seemed to act like them. But the real test was laid out in this current study.
Ten mice who received the retinal transplants were studied to see whether there were functional changes. When a light was shone in the retina, electrical signals came out of the cells, suggesting that the animals were responding to a light that under normal situations they would not have seen. Scientists also observed the pupils constricting in the mice, another sign they were registering the light in their eyes and the message was traveling to the brain.
“We restored some aspects of visual function,” Pearson said. “But we have no idea yet what the animals can or can’t see. It’s still a long way off from a human treatment.”

So, photoreception was restored, but vision probably was not. I am wondering if a cell transplant of retinal ganglion cells mat restore circadian photoreception – a serious problem in some blind people who “freerun” instead of being synchronized to the day-night cycle.

Now, for 2008.

As easily predicted, the 2008 presidential election is starting today. Apparently, Villsack is announcing today.

Cell Structure

Cell StructureSecond lecture notes from my BIO101 class (originally from May 08, 2006). As always, in this post and the others in the series, I need comments – is everything kosher? Any suggestions for improvement?

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Avian Skeptics

The 47th edition of the Skeptics’ Circle is up on Polite Company (OK, it is really here).
I and the Bird #36 is up on Words & Pictures.

SBC – NC’07

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Muni Subramani is coming to the 2007 North Carolina Science Blogging Conference. Are you?
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Perspective

Some good post-mortems:
Dave
Amanda
Ezra
Mike
Christy
Publius
Echidne
Atrios
Chris
Rick
Kos
Glenn
Glenn
Jason

A Woman’s Place Is In The House!

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(Title shamelessly stolen from Kristine because it is priceless)

It’s official

Webb won