Invertebrate blogging of the month

Circus of the Spineless #14 is up on Neurophilosopher’s blog

Biology and the Scientific Method

Biology and the Scientific Method
I am currently teaching only the lab portion of BIO101 and will not teach the lecture again until January, but this is as good time as ever to start reposting my lecture notes here, starting with the very first one (originally posted on May 07, 2006) and continuing every Thursday over the next several weeks.
Although this is old, I’d love to get more comments on each of those lecture notes. Did I get any facts wrong? Is the material inappropriate for the level I am teaching? Is there a bette rway to do it? Are there online resources I can tap into?

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Wine is Good For You

Shelley has already explained the recent study about the life-span increasing properties of Resveratrol, a compound found in wine.
Article in NYT tries to make a quick calculation (apparently erroneous) as of how much wine a person would have to drink in order to receive the same dose as the lab mice got in this study – “from 1,500 to 3,000 bottles of red wine a day”!
Perhaps the dose would be smaller if you could stand drinking the super-sweet Scuppernong (from muscadine grape – Vitis Rotundifolia) wine from Duplin Winery here in Rose Hill, North Carolina. As horribly sweet as it is, I actually like it. It comes in a couple of different versions, plus I heard that they also make and pack raisins (which are supposed to have an even higher concentration of Resveratrol).
There has been some research on the health effects of Resveratrol in muscadine wines locally, e.g.,. here, here and here (pdf). Duplin wines can be found in every store around here, but I wonder how easy it is to find them around the country? Have you tried them? Did you like them? Do you think you could drink a thousand bottles of it every day?
Addendum: Abel has more on the research.

SBC – NC’07

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Vedran Vucic is coming to the 2007 North Carolina Science Blogging Conference. That is the third blogger from Belgrade (including myself) at the conference!!!! We are definitely having a Balkan session! With slivovitz.
Are you registered yet?
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A blogging science librarian with stamina

Happy fourth blogiversary to John Dupuis, the confessing librarian! Go say Hello.

Blogger meetup

The next Chapel Hill Bloggers Meetup will be tonight, on Thursday, November 2nd at 6pm EST at Open Eye Cafe. I will try not to oversleep this time around and get to see you there.

Nursing blogging of the week

Change of Shift #10 is up on DisappearingJohn RN

A nice article about clocks

Eva of Easternblot just published a nice article about circadian clocks in her school newspaper. Much good stuff was cut out during the editing process, but she posted those good parts on her blog so you can see what the editors left out.

Salvation Candy

Yikes! I hope nobody gave you this candy last night!
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Is that just sand inside? I’d like to see someone do a chemical analysis of “Jesus’ Blood”
From this child-terrorrizing site, via Mr.Sun.

EduBlogging of the week

The 91st Edition of the Carnival of Education is up on The Median Sib.
The 44th edition of Carnival of Homeschooling is up on Why Homeschool.

What This Blog Is NOT About: Biorhythms

What This Blog Is NOT About: BiorhythmsOne of th efirst posts on Circadiana, just defining what the blog was about (January 17, 2005):

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SBC – NC’07

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A.K. Ravishankar of the Biotechnologist2020 – Mr.Jatropha is coming to the 2007 North Carolina Science Blogging Conference. Are you?
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Jump on the HealthTrain

Check out the freshly unvailed Open Healthcare Manifesto, designed to foster “open media” in healthcare and medicine and to implement “some sort of a new “integrity standard” … needed to help people sort through the junk that openness unfortunately tends to generate.”
To see the details, download the HealthTrain – the Open Healthcare Manifesto (pdf) and the HealthTrain Press Release (pdf)

You can help a student science blogger get a scholarship

You may be aware of the $5000 scholarship for students who are science bloggers.
Now the 10 finalists have been announced and you should go here to cast your vote.
I have initially nominated (and will vote for) Jenna (Jennifer Wong) of Cyberspace Rendezvous which is, in my opinion, the best student science blog around at this time and I hope you vote for her (but I cannot blame you if you choose Shelley instead).
What are the techie blogs doing on that list I have no idea. I do not think those are science blogs, but I am not running the contest. So, do your part to help a real science blogger beat the techies and get the money! Go now!
Update: Now I have looked at all 10 finalists and…wtf?! Why did I think this was for science bloggers? Only three are (Jenna, Shelley and anthropplogy.net) and we should all go and vote for thenm because the rest are…well, two I still have no idea what they are about after skimming the front page and sidebar, one is blogging friggin’ religion on Vox, one is a DailyKos diarist (is a Kos diary really a blog?) and the rest are techies. Why is Paul Stamatiou on there? He’s been on Technorati’s Top 100 list for, like, ages and probably rakes in more than 5 grand per year via blogads. He can also summon the greatest avalanche of readers to vote for him and sweep the board and leave the better bloggers in the dust. So, post the link to the vote on your blogs, please, and urge your readers to go and vote for Jenna.

Fizzler on the Roof

Fizzler on the RoofThe worst Tevye ever (January 26, 2005)

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Elephants pass the mirror test

Humans do it, great apes do it, dolphins do it, now elephants (also here) have also been shown to do it – recognize themselves in the mirror, i.e., realize that the image in the mirror is the image of themselves and not a strange animal. That’s a biggie in the world of cognitive science and the study of evolution of consciousness:

When the mirror was unveiled in their yard, they immediately walked over and began poking and prodding and inspecting and playing. They used their trunks to inspect it and then themselves. Two got on their hind legs to look on top of the mirror. One got on the ground to inspect the bottom of it. They opened their mouths, exploring an area of their body they were familiar with but had never seen. They even brought their food over to eat in front of the mirror.
“All three of the elephants demonstrated this self-directed behavior,” said Joshua Plotnik, a co-author of the study and a graduate student at Emory. And like children inspecting their own bodies, the elephants put their eyes right up to the mirror, seemingly to figure out what it was and how it worked, he said. Then they investigated parts of their bodies they had never seen. They grabbed one of their ears and pulled it towards the mirror for inspection. “These are behaviors that they don’t normally do,” he added.
The scientists used a non-toxic paint to mark a small spot on one side of each animal’s forehead, which would be visible when it looked in the mirror. They also marked an identical spot on the other side of the forehead, but invisible paint was used to test whether the animals were seeing rather than feeling the mark.
Happy was the only one of the three who noticed the spot and used her trunk to examine it — over and over again. She did not go after the invisible spot on the other side of her forehead.

Halloween Grand Rounds

When doctors get scary, than it is really scary – go check it out on Doctor Hébert’s Medical Gumbo

Google News?

I have a couple of subscription for Google News e-mail notifications for terms like “circadian” and what-not. This makes me informed fast enough for what I need (i.e., making a decision to blog or not about the news). Usually, I’d get 2-3 new entries for the “circadian” search-term each day (and even less for some other terms). A couple of days ago, I noticed that I am getting dozens. What is interesting that the entries are not from MSM or places like EurekAlert, but from blogs and MySpace!
So, what is the purpose of Google News? If I want to see what all websites have, I’ll use Google Search. If I want to see what bloggers are saying, I use Google Blogsearch. Google News is specifically for seeing what the MSM is saying. So, why did they do this? What is the distinction now between the three search engines?
The only positive I can think of is that my own entries show up there. But that only started about 5 minutes ago when Technorati finally updated my blog there after about 5 months of my whining and complaining to them. So, what is the connection between Technorati and Google? How did that work?

My picks from ScienceDaily

Groups And Grumps: Study Identifies ‘Sociality’ Neurons:

A University of California, San Diego study has for the first time identified brain cells that influence whether birds of a feather will, or will not, flock together. The research demonstrates that vasotocin neurons in the medial extended amygdala — which are present in most animals, including humans — respond differently to social cues in birds that live in colonies compared to their more solitary cousins.

Evolutionary Oddity: Erectile Tissue Helps Flamingos Eat:

With their spindly legs, long necks and bright plumage, flamingos are a curiosity of nature. Now a new discovery by a team of Ohio University researchers reveals an anatomical oddity that helps flamingos eat: erectile tissue.

Study Challenges Belief That Tree Frogs Depress Metabolic Rate After ‘Waxing’ Themselves:

Researchers from the University of Florida explore wiping behaviours in a tree frog that waxes itself, and test whether these frogs become dormant to conserve energy during dehydration. Many amphibians have skin that offers little resistance to evaporative water loss. To compensate, these and some other arboreal frogs secrete lipids and then use an elaborate series of wiping motions to rub the waxy secretions over their entire bodies.

Remember This: Receptors Govern How Brain Cells Communicate:

An hour from now, will you remember reading this? It all depends on proteins in your brain called NMDA receptors, which allow your neurons to communicate with each other. University of Pittsburgh researchers have discovered how different types of NMDA receptors perform varied functions. Their findings are published in the current issue of the Journal of Neuroscience.

Fruit Flies Tricked Into Thinking That Silkworm Moths Are Potential Mates:

It’s all about “the birds and the bees.” And now, “the silkworm moths and the fruit flies.” A chemical ecologist and a genetics researcher at the University of California, Davis, have joined forces to trick fruit flies into thinking that silkworm moths are potential mates. Groundbreaking research in the labs of chemical ecologist Walter Leal and genetics researcher Deborah Kimbrell shows that genetically engineered fruit flies responded to the silkworm moth scent of a female.

Women On Hormone Therapy Regain Emotion Response:

Older women on hormone therapy are more sensitive to negative events, confirming speculation that age-related estrogen loss affects the brain’s ability to process emotion, an Oregon Health & Science University study shows. Researchers found that hormone therapy appears to reverse the age-related loss of arousal to negative emotional events experienced by the elderly. It also points to specific changes in the brain’s arousal system, in the regions that process emotion, and intensification of negative emotions.

Circadian variation in athletic performance neglected by Beijing Games organizers

Apparently, the timing of sporting events in Beijing, probably driven by needs of American TV audiences, did not take into consideration the best time of day for athletic performance. But who cares about athletes, or even about breaking Olympic and world records, when delivering Joe Schmoe to the Budweiser commercial is much, much more important for the success of Olumpic games?!
This article provides a nice summary of the issue and the current state of understanding of the way circadian clocks affect athletic performance:
Science Says Athletes Perform Better At Night

SBC – NC’07

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Danica Radovanovic of Belgrade and Beyond is coming to the 2007 North Carolina Science Blogging Conference all the way from Belgrade! We can now have our own break-out session in Serbo-Croatian language. And we have not heard of each other until now.
Are you registered yet?
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Open Access Science Publishing

Bill Hooker has joined the blogging stable at 3 Quarks Daily – congratulations! He is starting with an excellent and well-documented article about Open Access Publishing.

On Velikovsky

Archy sums it all up in An object lesson in Wiki research. Nice to see a professional historian take a look at history of pseudoscience.

Carnival of the Green #51

Carnival of the Ghoulish Green is up on Groovy Green. Next week, the carnival celebrates its first anniversary by going back home to City Hippy.

The Kindergarden Regime

A hat-trick from Orcinus:
Sara explores new frames in Adult Supervision. Funny, as well as insightful.
Dave on Science And Republicans and Those Republican values.

Amanda’s Hat-Trick

Three-in-a-row for Amanda Marcotte, on what liberalism is, totally brilliant (can someone hire her, please, for an editorial page?):
The non-ideological era
Liberalism in ascendance
Who Counts?:

…what conservatives mean when they say they’re for “small” government and liberals are for “big” government–those adjectives describe the size of the number of people that count as worthy of government attention, protection, and assistance in their view.

Neuroblogging of the week

The Synapse #10 is up on Neurocritic. Next week, it is the turn for Encephalon (the two neurocarnivals appear on alternate weeks) and it will be hosted by me, right here. Send your entries by November 5th at 5pm EST to: Coturnix AT gmail DOT com.

My picks from ScienceDaily

Trotting With Emus To Walk With Dinosaurs:

One way to make sense of 165-million-year-old dino tracks may be to hang out with emus, say paleontologists studying thousands of dinosaur footprints at the Red Gulch Dinosaur Tracksite in northern Wyoming. Because they are about the same size, walk on two legs and have similar feet, emus turn out to be the best modern version of the enigmatic reptiles that once trotted along a long-lost coastline in the Middle Jurassic.

Grape Seed Extract Halts Cell Cycle, Checking Growth Of Colorectal Tumors In Mice:

Chemicals found in grape seeds significantly inhibited growth of colorectal tumors in both cell cultures and in mice, according to researchers who have already demonstrated the extract’s anti-cancer effects in other tumor types.

Hive Mentality: Researchers Create Buzz Over Social Behavior Genetics:

Though you may not be able to teach an old dog new tricks, Arizona State University researchers have found that evolution may have taught old genes new tricks in the development of social behavior in honeybees. The genetic basis of social behavior is being deciphered through the efforts of ASU researchers and their work with the honeybee, Apis mellifera.

Social Amoebas’ Family Tree Reveals Evolutionary Clues:

The full family tree of the species known as social amoebas has been plotted for the first time — a breakthrough which will provide important clues to the evolution of life on earth.

Flight of the Bumblebee: Flower Choice Matters:

Bees play a vital role in the pollination of native wildflowers, and UWM researchers are studying how invasive species interfere with seed production in these native plants.

New Web-based System Leads To Better, More Timely Data:

After two years of work, an innovative project using web-based technologies to speed researcher access to a large body of new scientific data has demonstrated that not only access to but also the quality of the data has improved markedly. The data-entry process for the web-enabled ThermoML thermodynamics global data exchange catches and corrects data errors in roughly ten percent of journal articles entered in the system.

Global Warming And Your Health:

Global warming could do more to hurt your health than simply threaten summertime heat stroke, says a public health physician. Although heat-related illnesses and deaths will increase with the temperatures, climate change is expected to also attack human health with dirtier air and water, more flood-related accidents and injuries, threats to food supplies, hundreds of millions of environmental refugees, and stress on and possible collapse of many ecosystems that now purify air and water.

Let’s Divide: How Daughter Cells Get Their Share Of Genetic Material:

When cells divide, control mechanisms ensure that the genetic material, in other words the chromosomes, is correctly distributed to the daughter cells. Researchers at the Max Planck Institute for Molecular Genetics in Berlin have now explained the molecular principles of these control processes.

Brain Research Supports Drug Development From Jellyfish Protein:

With the research support from the University of Wisconsin-Milwaukee, a Wisconsin biotech company has found that a compound from a protein found in jellyfish is neuroprotective and may be effective in treating neurodegenerative diseases.

Michigan State Researcher Traces The Evolution Of Honey Bee Gender:

A first-of-its-kind evolutionary strategy discovered among invertebrate organisms — or honey bees — shows how a complex genetic mechanism determines gender and maximizes gene transmission to the next generation of several bee species.

Time

In my part of the world, and most of the US and Europe as well, there was a general agreement that all clocks would be set an hour off back in April. This may have made sense in a world in which most people worked on a single shift, and most factories were lit via skylights for that single shift, but it’s absurd in the 24/7 world of this millennium. Fortunately, as of 2:30 this morning we’ve allowed to set our clocks back to the correct time. The computers switch automatically, I think I know how to set my wristwatch back (well, ahead 23 hours actually, it’s digital), but millions will be digging our the manuals for their VCRs today. Today’s theme: Time.
Okay, so it’s yesterday’s theme. By the time I had the quotes selected something else came up and I forgot to mail them!
Take time to deliberate; but when the time for action arrives, stop thinking and go in.
– Andrew Jackson, 1767 – 1845
Lost time is like a run in a stocking. It always gets worse.
– Ann Morrow Lindbergh, 1906 – 2001
Time is the coin of your life. It is the only coin you have, and only you can determine how it will be spent. Be careful lest you let other people spend it for you.
– Carl Sandburg, 1878 – 1967
Bad times, hard times, this is what people keep saying; but let us live well, and times shall be good. We are the times: Such as we are, such are the times.
– Augustine of Hippo, 354 – 430
The shortest way to do many things is to do only one thing at a time.
– Sydney Smiles
Nine-tenths of wisdom is being wise in time.
– Theodore Roosevelt, 1858 – 1919

From today’s Quotes Of The Day

SBC – NC’07

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Josh Staiger is coming to the 2007 North Carolina Science Blogging Conference. Are you?
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The Mooney Experience

Just a quick note. I finally got to meet Chris Mooney, my fellow Seed Scienceblogger and the author of The Republican War on Science.
On Saturday, we met early enough to have coffee and a little chat before his book-reading and signing event at Quail Ridge Books in Raleigh. The long weekend in local schools (Friday off in Orange Co. and Monday off in Wake Co.) and a break in bad weather we had recently propably prompted a lot of locals to make that last trip out of town for the year this week, so the size of the crowd was not as impressive as it could have been, but those present were good and asked good questions afterwards.
I have to say that Chris has got his schtick down pat – the talk flows smoothly, is funny and to the point, and pre-empts all the usual protestations before they get to be voiced by anyone in the audience. If he comes to your neck of the woods, by all means go and see him.
His visit (which continues today at Regulator Bookshop in Durham and tomorrow at Duke University) was also an opportunity to just hang out (something I am out of practice with), chat and have a beer with friends who are also (science) bloggers, including Dave Munger,
Reed Cartwright and Tiffany, Abel PharmBoy, etbnc and Anton Zuiker.
Chris was not in a mood for a dinner at an elegant place, so instead we went to a cheep-beer/good-bar-food place, my old grad-school haunts where we stayed until midnight, chatting about science, politics, blogging, journalism, hurricanes (the topic of his next book) and many other things.
Even better, Chris gave us each a CD (“Luckless Pedestrian”) of his brother’s jazz band, the David Mooney Trio. I listened to it today and it’s great.

On the Window Sill

Marbles (left) and Biscuit (right):
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Heat and Flow

Panta Rei #4 is up on Down To Earth

NC blogging of the week

The Tar Heel Tavern has a new host this week – Dr.R of Evolving Education has just posted the 88th edition. Go there, say Hi, and check out the best North Carolina blogging of the week.

Medical Imaging of the Week

Radiology Grand Rounds #5 are now up on Sumer’s Radiology Site.

Godlessness of the week

Carnival of the Godless #52 is up on Skeptic Rant. Check the invisible links.

SBC – NC’07

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Connie Childrey is coming to the 2007 North Carolina Science Blogging Conference. Are you?
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My picks from ScienceDaily

Insights Into Honey Bee Sex Gene Could Bring Sweet Success In Breeding:

What makes a bee a he or a she? Three years ago, scientists pinpointed a gene called csd that determines gender in honey bees, and now a research team led by University of Michigan evolutionary biologist Jianzhi “George” Zhang has unraveled details of how the gene evolved. The new insights could prove useful in designing strategies for breeding honey bees, which are major pollinators of economically important crops–and notoriously tricky to breed.

Key Gene Controlling Eye Lens Development Identified:

Investigators at St. Jude Children’s Research Hospital have discovered in mouse models that a gene called Six3 is one of the earliest critical regulators controlling lens development in the eye of the mammalian embryo.

Keep Your Eyes On The Puck: Hockey Goalies With The Quiet Eye Have A Better Chance Of Making Big Saves:

Researchers at the University of Calgary’s Faculty of Kinesiology may have found the secret to dazzling goaltending, after they discovered the exact spot a goalie needs to watch to be successful.

Honey Bee Chemoreceptors Found For Smell And Taste:

Honey bees have a much better sense of smell than fruit flies or mosquitoes, but a much worse sense of taste, according to researchers at the University of Illinois at Urbana-Champaign.

Out Of Africa: Scientists Uncover History Of Honey Bee:

“Every honey bee alive today had a common ancestor in Africa” is one conclusion drawn by a team of scientists that probed the origin of the species and the movements of introduced populations, including African “killer” bees in the New World.

New Genetic Analysis Forces Re-draw Of Insect Family Tree:

The family tree covering almost half the animal species on the planet has been re-drawn following a genetic analysis which has revealed new relationships between four major groups of insects.

The science of polling

Zeno has posted a nice, easy-to-understand primer on statistics and polling.

SBC – NC’07

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Dave Johnson is coming to the 2007 North Carolina Science Blogging Conference. Are you?
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Kefli

Kefli was my second horse, back in Yugoslavia. I raised him from foal until he was almost 3 years old. I sold him a few days before I left for he US. I just got a picture of him, from a few years later:
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Teaching Biology Lab

Tomorrow morning I am starting to teach again. Only the lab this time around, my colleague is teaching the lecture. And it is going to look pretty much the same as last couple of times I did it:
Week 1
Week 2
Week 3
Week 4

Tangled Bank #65

Tangled Bank, Darwin or Wallace edition, is (finally) up on Thoughts From Kansas. There is something wrong with the intended host’s website, so Josh volunteered to save the carnival and did a splendid job at such short notice.

Lakoff on “staying the course”

In today’s New York Times. (via Ed Cone)

How Should We Call Them?

How Should We Call Them?A follow-up on last week’s repost (originally from April 06, 2005)…

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My picks from ScienceDaily

Cougar Predation Key To Ecosystem Health:

The general disappearance of cougars from a portion of Zion National Park in the past 70 years has allowed deer populations to dramatically increase, leading to severe ecological damage, loss of cottonwood trees, eroding streambanks and declining biodiversity. Researchers are calling it a “trophic cascade” of environmental degradation.

Professor Analyzes Nuclear Receptors In Bee Genome:

Susan Fahrbach, a Wake Forest University biologist, is among the more than 170 researchers who helped decode the honey bee genome. She contributed to the article on the bee genome sequence that appears in the October 26 issue of Nature. Her piece of the puzzle — analyzing the nuclear hormone receptors found in the bee genome — also appears in the current issue of Insect Molecular Biology.

Secrets Revealed In Sequencing Of Honey Bee Genome:

What do fruit flies, mosquitoes, silk moths and honey bees have in common? First, they are all insects. Second, they have all had their genomes sequenced, a feat that will make it much easier to discern both similarities and differences.

Moderate Drinking May Boost Memory, Study Suggests:

In the long run, a drink or two a day may be good for the brain. Researchers found that moderate amounts of alcohol — amounts equivalent to a couple of drinks a day for a human — improved the memories of laboratory rats. Such a finding may have implications for serious neurodegenerative diseases like Alzheimer’s.

SBC – NC’07

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Fred Stutzman, the Facebook expert from Unit Structures is coming to the 2007 North Carolina Science Blogging Conference. Are you?
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Google-Bomb the Election

If you go here and copy and paste the code into your blog, you will get something that looks like this:

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Republican War On Science comes to the Triangle

Chris Mooney will be in the Triangle for three days – October 28-30th. Come to one of his book-readings:
Saturday, October 28
7:00 PM-8:30 PM
Quail Ridge Books
3522 Wade Ave.
Raleigh, NC 27607
Sunday, October 29
4:00 PM-5:30 PM
Regulator Bookshop
720 Ninth Street
Durham, NC 27705
Monday, October 30th
12 noon-1 PM
“Science Friction: When Science and Politics Collide”
Duke University Medical Center
Duke Center for the Study of Medical Humanities and Ethics
Room 2002, Duke North Lecture Hall
If you want to do more, i.e., meet Chris at some other time/venue, ask me, or even better, ask Abel who is in charge of the schedule.
Note: Bumped to top as the events are coming really close….

Internet use in Serbia

There is a new study out on computer and internet use in Serbia (via). Several things immediately jumped out at me: how many people connect by modem, how many connect from home (as opposed to work, school, etc.), how big is the rural/urban divide, and how many people think they have no use for the Internet and expect never to use it in their lives.
I have a feeling that these findings are quite different from other countries (not to mention the US). I’d like to know what are the equivalent numbers in other countries in which such studies have been done.
The numbers in Serbia may be also a result of the migrations over the past 15 years. Hundreds of thousands of people have left the country – mostly young, educated people who speak foreign languages (and thus have the ability and need to use the Internet fully). Thus, the population may have a slight skew at the moment towards older and less educated people. The youngest generations are still at the personal IM-ing stage and may start using the Internet more over the next few years as they grow up, MySpace first, then the rest of it.
Anyway, the numbers are not so bleak as they are rising every year (the study has been conducted annually since 1999) and the new generations will use the Internet more. Once the businesses, schools and “old” media get smarter about their Internet use and there is more broadband/wifi connection available, the use will likely skyrocket. There are certainly somne great blogs there, see here, here and here.