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My picks from ScienceDaily
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Posted in Science News
Why crash an internet poll?
Simon Owens just published a nice article on PBS’ MediaShift about crashing internet polls. My SciBlings PZ Myers and Greg Laden were interviewed for the article and have said some smart things with which I agree.
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Posted in Blogging, Technology
Today’s carnivals
Carnival of the Blue #18 is up on Deep Sea News
The latest edition of Four Stone Hearth is up on Archaeoporn
99th Skeptic’s Circle is up on Ferret’s Cage
Transition and the new Cabinet
There are rumors aplenty, but take them with caution, about potential members of the Obama Administration.
Despite understanding, on a cerebral level, what Obama is trying to do, on a visceral level my instinct is to use the majority to implement progressive policies fast and forcefully, to have enough time for those policies to take hold and demonstrate to the people that they are good – two years of gradual economic recovery, new jobs, affordable health-care, serious environmental programs and such can lead to further increase in Dem numbers in Congress instead of decline, and would ensure Obama’s re-election another two years after.
I understand that, as a Progressive, I will not like all of his cabinet picks or agree with all of his policy proposals.
I guess I can live with Rahm Emanuel.
But there are people I cannot live with.
Robert Kennedy Jr. is one of those. He is the typical paranoid, conspiracy-theorist, hyperbolic quack. A kind of person shunned, ignored and marginalized by the Democratic Party for decades now for two good reasons: such people’s judgment cannot be trusted, and such people give the party a bad name. We are supposed to be Reality-Based Community and RFK Jr. does not belong.
For more information, this is your Obligatory Reading of the Day. RFK Jr as a head of a Federal Agency (either Interior or Environment) would be equivalent to Michael Crichton advising Bush on climate change, or McCain choosing Sarah Palin for VP. Embarrassing.
The other one is Larry Summers. Others are also vocing doubts, for various reasons. But if you search Scienceblogs you will see that Summers would be a very, very bad choice.
Now, how can Obama be notified that most scientists, academics and otherwise educated folks would be very unhappy about these two choices? Does anyone have a personal touch with a member of his Transition Team? Good connections in the Mainstream Media? Or could we, by screaming to the tops of our voices on many blogs catch the attention of the Media sufficiently for Obama himself to be made aware of it? What is the best way to do this?
But there are also positive suggestions. We have already discussed several potential Science Advisors. We know that Obama is very pro-science and he mentions science in every speech. I have pushed for my choice, but there are several other good choices as well.
How about Lawrence Lessig? Obama’s campaign has used the technology in a truly winning way so he should understand how important freedom of information is.
And how do we push these ideas loudly enough to get picked up by the media and the Transition Team?
Update – more from my SciBlings:
Revere
Mike the Mad Biologist
Mike Dunford
Josh Rosenau
Blake
Chad
Sciencewoman
Orac
Orac
Orac
PalMD
ERV
MarkH
DarkSyde
Brandon Keim
Posted in Politics
Paleontologist to discuss detecting life on other planets
In today’s News and Observer:
Mary H. Schweitzer, associate professor of paleontology at N.C. State University, will talk about how paleontology can help determine whether life ever existed on other planets.
She will speak at a Periodic Tables event sponsored by the Museum of Life and Science in Durham on Tuesday.
Periodic Tables is a regular program that gives adults a chance to learn and discuss the latest in science. Schweitzer will share her expertise in the field of astrobiology and explain how we can use the tools of molecular paleontology to detect biomarkers not only in fossils but also in extraterrestrial samples.
The program begins at 7 p.m. at the Broad Street Cafe, 1116 Broad St., Durham. It is free and open to the public.
For more information, go to the Periodic Tables page on the Museum of Life and Science’s Web site.
North Carolina newspapers – yesterday’s front pages
NC Press Asociation’s front pages from Wednesday.
Due to narrow margin – about 12,000 in Obama’s favor – the state has to count all the provisional ballots (which usually favor Dems) and all the mail-in ballots (mostly from the military personnel abroad – who knows who that favors any more!). There is little chance, though, officials and statisticians say, that the additional counting will reverse the order, but the official business has to be done in an orderly way. Unofficially, North Carolina went Blue this year. This will become official in a couple of days, I guess. How? Large influx of people from NY, OH, CA, MI and elswehere, coming to NC to work in technology and biotech industries. Large urban centers (Charlotte, Raleigh, Durham, Chapel Hill, Cary, Greensboro, Winston-Salem, Asheville, etc.) getting more and more democratic, but also good ground game in heavily Republican counties in the mountains that each have a small University campus brought many of the students to vote and turned those counties blue as well.
The state went for Obama. The state legislature remains Democratic. The Dem governor Mike Easley was replaced by the Dem governor Beverly Purdue. Congressman Hayes was kicked out by Larry Kissel. Elizabeth Dole was trounced by the new Senator Kay Hagan. It feels good to be a North Carolinian today.
There were celebrations around here – in Durham, Chapel Hill and Carrboro on Tuesday night. And there were fireworks coming from the direction of the UNC campus and/or Carolina stadium after the 11pm announcement.
Update: It is official now – AP reports that Obama won North Carolina! w00t!!!!
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Posted in North Carolina, Politics
A History Lesson
Uploaded on authorSTREAM by jahanl1
Clock Quotes
Freedom is a powerful animal that fights the barriers, and sometimes makes people wish for higher fences.
– Lance Morrow
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Posted in Clock Quotes
My picks from ScienceDaily
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Posted in Science News
New and Exciting in PLoS ONE
There were 15 new articles in PLoS ONE published last night but I was too busy watching the election returns. As always, you should rate the articles, post notes and comments and send trackbacks when you blog about the papers. Here are my own picks for the week – you go and look for your own favourites:
Historical Mammal Extinction on Christmas Island (Indian Ocean) Correlates with Introduced Infectious Disease:
It is now widely accepted that novel infectious disease can be a leading cause of serious population decline and even outright extinction in some invertebrate and vertebrate groups (e.g., amphibians). In the case of mammals, however, there are still no well-corroborated instances of such diseases having caused or significantly contributed to the complete collapse of species. A case in point is the extinction of the endemic Christmas Island rat (Rattus macleari): although it has been argued that its disappearance ca. AD 1900 may have been partly or wholly caused by a pathogenic trypanosome carried by fleas hosted on recently-introduced black rats (Rattus rattus), no decisive evidence for this scenario has ever been adduced. Using ancient DNA methods on samples from museum specimens of these rodents collected during the extinction window (AD 1888-1908), we were able to resolve unambiguously sequence evidence of murid trypanosomes in both endemic and invasive rats. Importantly, endemic rats collected prior to the introduction of black rats were devoid of trypanosome signal. Hybridization between endemic and black rats was also previously hypothesized, but we found no evidence of this in examined specimens, and conclude that hybridization cannot account for the disappearance of the endemic species. This is the first molecular evidence for a pathogen emerging in a naïve mammal species immediately prior to its final collapse.
Sex Differences in Neural Activation to Facial Expressions Denoting Contempt and Disgust:
The facial expression of contempt has been regarded to communicate feelings of moral superiority. Contempt is an emotion that is closely related to disgust, but in contrast to disgust, contempt is inherently interpersonal and hierarchical. The aim of this study was twofold. First, to investigate the hypothesis of preferential amygdala responses to contempt expressions versus disgust. Second, to investigate whether, at a neural level, men would respond stronger to biological signals of interpersonal superiority (e.g., contempt) than women. We performed an experiment using functional magnetic resonance imaging (fMRI), in which participants watched facial expressions of contempt and disgust in addition to neutral expressions. The faces were presented as distractors in an oddball task in which participants had to react to one target face. Facial expressions of contempt and disgust activated a network of brain regions, including prefrontal areas (superior, middle and medial prefrontal gyrus), anterior cingulate, insula, amygdala, parietal cortex, fusiform gyrus, occipital cortex, putamen and thalamus. Contemptuous faces did not elicit stronger amygdala activation than did disgusted expressions. To limit the number of statistical comparisons, we confined our analyses of sex differences to the frontal and temporal lobes. Men displayed stronger brain activation than women to facial expressions of contempt in the medial frontal gyrus, inferior frontal gyrus, and superior temporal gyrus. Conversely, women showed stronger neural responses than men to facial expressions of disgust. In addition, the effect of stimulus sex differed for men versus women. Specifically, women showed stronger responses to male contemptuous faces (as compared to female expressions), in the insula and middle frontal gyrus. Contempt has been conceptualized as signaling perceived moral violations of social hierarchy, whereas disgust would signal violations of physical purity. Thus, our results suggest a neural basis for sex differences in moral sensitivity regarding hierarchy on the one hand and physical purity on the other.
Recognition Profile of Emotions in Natural and Virtual Faces:
Computer-generated virtual faces become increasingly realistic including the simulation of emotional expressions. These faces can be used as well-controlled, realistic and dynamic stimuli in emotion research. However, the validity of virtual facial expressions in comparison to natural emotion displays still needs to be shown for the different emotions and different age groups. Thirty-two healthy volunteers between the age of 20 and 60 rated pictures of natural human faces and faces of virtual characters (avatars) with respect to the expressed emotions: happiness, sadness, anger, fear, disgust, and neutral. Results indicate that virtual emotions were recognized comparable to natural ones. Recognition differences in virtual and natural faces depended on specific emotions: whereas disgust was difficult to convey with the current avatar technology, virtual sadness and fear achieved better recognition results than natural faces. Furthermore, emotion recognition rates decreased for virtual but not natural faces in participants over the age of 40. This specific age effect suggests that media exposure has an influence on emotion recognition. Virtual and natural facial displays of emotion may be equally effective. Improved technology (e.g. better modelling of the naso-labial area) may lead to even better results as compared to trained actors. Due to the ease with which virtual human faces can be animated and manipulated, validated artificial emotional expressions will be of major relevance in future research and therapeutic applications.
From Oxford to Hawaii Ecophysiological Barriers Limit Human Progression in Ten Sport Monuments:
In order to understand the determinants and trends of human performance evolution, we analyzed ten outdoor events among the oldest and most popular in sports history. Best performances of the Oxford-Cambridge boat race (since 1836), the channel crossing in swimming (1875), the hour cycling record (1893), the Elfstedentocht speed skating race (1909), the cross country ski Vasaloppet (1922), the speed ski record (1930), the Streif down-hill in Kitzbühel (1947), the eastward and westward sailing transatlantic records (1960) and the triathlon Hawaii ironman (1978) all follow a similar evolutive pattern, best described through a piecewise exponential decaying model (r2 = 0.95±0.07). The oldest events present highest progression curvature during their early phase. Performance asymptotic limits predicted from the model may be achieved in fourty years (2049±32 y). Prolonged progression may be anticipated in disciplines which further rely on technology such as sailing and cycling. Human progression in outdoor sports tends to asymptotic limits depending on physiological and environmental parameters and may temporarily benefit from further technological progresses.
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Posted in Science News
Clock Quotes
If there is anyone out there who still doubts that America is a place where all things are possible; who still wonders if the dream of our founders is alive in our time; who still questions the power of our democracy, tonight is your answer.
– Barack Obama, President-Elect
Posted in Clock Quotes
My picks from ScienceDaily
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Posted in Science News
ScienceOnline09 – Rhetoric of science

You already know that the Program for ScienceOnline09 contains several sessions that look, from different angles, at the question of reputation and authority in science, online and offline.
Related to this, as a recent lively discussion on science blogs demonstrated, is the question of the use of language. So, it is quite fitting that we have a session planned just about this topic:
Rhetoric of science: print vs. web:
This session is moderated by Christian Casper and Neil Caudle:
There is no doubt that online communication environment is changing the way we use language. LOL. Scientific papers are an example of some of the most unreadable literature in existence, yet now that it is all online, will this change? Is the public access to papers going to induce scientists to keep lay audience in mind, as well as their scientific peers, when writing their manuscripts? Should readers’ comments and notes on papers be more formal than the comments on blogs? Why?
Roosevelts on Toilets

If you are wondering why I posted this picture and what it all (including the title of this post) means, you need to read the comment threads on these posts:
The Transition to Daylight Savings Time and the Risk of Myocardial Infarction
The Response from Janszky and Ljung — Dr. Isis Defends the Blogosphere
What is ‘the normal way to debate and discuss scientific findings’ anyway?
Spring Forward, Fall Back – should you watch out tomorrow morning?
Notes of importance
Bora is the Most Brilliant Man Ever and I Love Him
Pseudonimity, scientific criticism and respect on the blogs…
Discourse give me hives
The Pseudonymity Laboratory: When Authors and Bloggers Collide
Letter to the Editor as a mechanism of post-publication scientific discussion
Cadres vertueux
Update – there’s more:
On Caricature
Getting the roles of blogs and journals straight
Bring in da light, bring in da snark
On the Need for Women to Defend Women in Science…
Posted in Blogging, Open Science
Low-Hanging Fruit
Low-Hanging Fruit is a website which collects data about drug/compound screens against parasitic organisms.
Michelle Arkin and James McKerrow explain:
The apples on the tree at the website represent links to data for the parasites indicated. In some cases, this data is a simple list of hits to be viewed by those individuals and agencies interested in rapid follow-up. In other instances, a more complete database can be accessed under “protocols and statistics” as compiled by Pipeline Pilot (Accelrys) software.
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Posted in Medicine, Open Science
I have voted. Have you?
This is an uber-liberal enclave in NC, so more than 80% excited voters already voted early. Still, it was hard to find parking this morning.



Posted in North Carolina, Politics
Climate Change and the Neglected Majority
The next Sigma Xi lunch pizza in RTP will be noon MONDAY, Nov. 17. Come hear Rob Dunn, assistant professor of zoology at NC State, talk about “Climate Change and the Neglected Majority.” Dunn, among other things, is interested in insects and how changes in their distribution affect ecosystems.
Sigma Xi’s Pizza Lunch speaker series is free and open to science journalists and science communicators of all stripes (feel free to forward this message to anyone you would like to be included). RSVPs are required to cclabby@amsci.org.
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Posted in Ecology, Environment, North Carolina, Science Education, Science Reporting
Clock Quotes
Those disputing, contradicting, and confuting people are generally unfortunate in their affairs. They get victory, sometimes, but they never get good will, which would be of more use to them.
– Benjamin Franklin
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Posted in Clock Quotes
How Drosophila circadian pacemaker drives organismal rhythms?
Totally cool:
Phase Coupling of a Circadian Neuropeptide With Rest/Activity Rhythms Detected Using a Membrane-Tethered Spider Toxin:
The regulation of the daily fluctuations that characterize an organism’s physiology and behavior requires coordination of the cellular oscillations of individual “clock” neurons within the circadian control network. Clock neurons that secrete a neuropeptide called pigment dispersing factor (PDF) calibrate, or entrain, both the phase of organismal rhythms and the cellular oscillations of other clock neurons. In this study, we tested the hypothesis that phase of PDF secretion rhythms entrains phase of non-PDF neurons and locomotor rhythms using the tethered- toxin technique (which affixes toxins to the cell membrane) to express ion channel-specific peptide toxins in PDF neurons. A particular toxin inhibits inactivation of the Drosophila para sodium (Na+) channel. Inhibition of Na+ channel inactivation in PDF neurons of transgenic flies induces phase advance of PDF rhythm, and correlated phase advance of lights-on anticipatory locomotor activity, suggesting that phase of morning activity is determined by phase of PDF oscillation. Therefore, voltage-gated Na+ channels of Drosophila clock neurons play a key role in determining the phase relationship between circadian transcriptional feedback oscillation and PDF secretion, and PDF-secreting clock neurons entrain the phase of organismal rhythms via the temporal patterning of secreted PDF signals.
Posted in Chronobiology, Clock News
ScienceOnline09 – tapping into the hive-mind

Continuing with the series of posts highlighting sessions in the Program at the upcoming ScienceOnline09, here are some sessions that deal with collaboration and networking between scientists and between their data.
Community intelligence applied to gene annotation:
This session is moderated by Andrew Su and John Hogenesch:
Despite identification of the ~25,000 genes which comprise the “parts list” of the human genome, researchers continue to largely study previously-studied genes, leaving half of the genes in the human genome virtually unannotated. Moreover, there is growing recognition that under-resourced curators at official annotation centers will be overwhelmed with the pace of scientific discovery. This session will explore the application of community intelligence principles (“crowdsourcing”) to the goal of genome-wide gene annotation. As a starting point for the discussion, we will overview several recent efforts in this area, including the Gene Wiki, WikiProteins, WikiPathways, and WikiGenes. We will also overview BioGPS, an extensible and customizable gene portal that allows the entire scientific community to collaboratively build a gene annotation portal. Issues to be discussed include data reliability, credit and incentives, and community-building.
Links:
Gene Wiki (website – paper)
WikiProteins (website – paper)
WikiPathways (website – paper)
WikiGenes (website – paper)
BioGPS (website)
Semantic web in science: how to build it, how to use it:
This session is moderated by John Wilbanks:
Connections, connections, connections (as Miss Frizzle would say). What is new and what else needs to be done to make data “talk” to each other? What will it all mean?
Open Notebook Science – how to do it right (if you should do it at all):
This session is moderated by Jean-Claude Bradley and Cameron Neylon:
Some scientists are now putting their entire, detailed lab notebooks online and updating them in real time. How is this done? Why is this done? What are the pros and cons? Is this something you should consider doing?
For a good current discussion see the Wikipedia entry of Open Notebook Science.
Social networking for scientists:
This session is moderated by Cameron Neylon and Deepak Singh:
It seems that everyone is developing ‘facebooks’ for scientists these days. But they are not catching on. Why? What will make one of them a success one day?
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Posted in SO'09
Today’s carnivals
Mendel’s Garden #25 is up on evolgen
The Last Edition of the Carnival to Replace Michele Bachmann. Ever. is up on Tangled Up in Blue Guy
Carnival of the Green # 152 is up on Real Central VA
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Posted in Carnivals
Semlin Judenlager
This is a website worth spending some time on and looking at every page:
This website is linked to a British Academy funded research project on the post-World War Two memorialisation of one of the main sites of the Holocaust in Nazi-occupied Serbia, the Semlin Judenlager. Established by Nazi Germany in December 1941 on the outskirts of Belgrade, Semlin (also known by its Serbian name Sajmište) was one of the first concentration camps in Europe, created specifically for the internment of Jews. Between March and May 1942, approximately 7,000 Jewish women, children and the elderly (almost half of the total Jewish population of Nazi-occupied Serbia) were systematically murdered there by the use of a mobile gas van. After the Jewish interns were killed, Semlin was turned into an Anhaltelager, a temporary detention camp for political prisoners, captured Partisans and forced labourers, most of whom were subsequently transported to various labour camps in Germany. Between May 1942 and July 1944, 32,000 inmates (mainly Serbs) passed through the camp, of which 10,600 were killed or died of starvation, exposure, or disease. Semlin was the largest concentration camp in Nazi occupied Serbia.
In spite of its importance as a place of the Holocaust, the Semlin Judenlager played a marginal place in the memorialisation of the destruction of Serbian Jewry in post-war Yugoslav/Serbian society. The research project seeks to explain why this is the case by looking at the representations of the camp in Yugoslav/Serbian historiography of the Second World War, in the media and at commemorative ceremonies between 1945 and the present. It explores the nexus of ideological and institutional dynamics implicated in remembering the Holocaust in Serbia, and specifically the manner in which the memory of the destruction of the Jews was assimilated within the dominant symbolic orders, first within multi-ethnic Yugoslavia – where the heroism of the Partisans, rather than the victimisation of the civilian population, constituted the primary object of memory – and later within the post-Yugoslav ideological milieu, which was dominated by Serbian nationalism and preoccupied with the suffering of Serbs under the Ustasha regime in Croatia during the Second World War.
In exploring the creation, maintenance and transformation of the memory of the Semlin camp since 1945, the project also considers a number of broader issues relevant to the understanding of Holocaust memorialisation in Eastern Europe, including the dynamic relationship between the historiography of the Holocaust and its place in public remembrance, and the continuities and discontinuities between the Communist and post-Communist periods in the way in which the destruction of Jews is understood and remembered.
At present, the website contains a brief history of the Holocaust in Nazi-occupied Serbia, a history of the Semlin camp between 1941 and 1944, and an insight into the life at the Semlin Judenlager through the letters of a nineteen year old inmate, Hilda Dajč, which are made available for the first time in the English language. Also, it contains an account of the post-war fate of the site of the Semlin camp, which outlines the various attempts over the years to commemorate the victims. Finally, the site offers a ‘virtual tour’ of the main sites in Belgrade relevant to the history of the Holocaust.
Once you are done with the website, do yourself a favor and order Gotz and Meyer by David Albahari – you will find yourself finishing it in one sitting:
Embodiments of the banality of evil, Gotz and Meyer are two German SS noncommissioned officers who drive a truck in which, over a period of weeks, they gas to death 5,000 Jewish inmates of a Belgrade concentration camp. “They are conscientious, they always arrive on time, they are calm and cheerful… their uniforms tidy, their step light,” and they even hand out chocolates to cheer up the children they are about to kill. The nameless narrator of this haunting Holocaust story, a Jewish teacher in post-Cold War Belgrade, fixates on the two men to get a handle on the murder of his parents’ families by the Nazis. Serbian novelist Albahari (‘Bait’) imagines the mundane circumstances of their lives as their obscene task dulls into everyday routine, and delves into the history of those who died in the camp. He elaborates the details of the Nazi extermination apparatus, how the carbon monoxide gas acts, the hopeless stabs at normality by the imprisoned Jews. Eventually, the narrator’s flat, prosaic recitation of facts merges with hallucinatory reveries in which both his relatives and their murderers come to life. Even as his attempts to extract meaning through a historical recreation of the catastrophe grow increasingly futile, they yield in the end a numbed but moving elegy.
————————
“What would I have done?” is a fundamental question in Holocaust literature. Translated from the Serbian, this stirring novel draws on a wealth of archival materials, maps, and Nazi bureaucratic records about the concentration camp at the Belgrade Fairgrounds, from where, over five months in 1942, 5,000 Jews were loaded into a truck and gassed. A Serbian Jewish college professor looks back now and obsessively imagines himself as perpetrator, victim, and bystander. Who were the two drivers who connected the exhaust pipe each time so that the fumes killed the passengers? How did it become just a routine job? Who buried the heaped corpses? What if one kid tried to resist? How could Belgrade citizens not know? There are no chapters or even paragraphs, but the spacious text is simple and eloquent, and readers will be drawn into the professor’s obsessive first-person narrative in which the horror is in the facts of bureaucratic efficiency and the unimaginable evil in ordinary life.
Power of the online community?
Let’s see if social web services can be used for the science and research causes? Please read: MacBook for me – the power of Web!
I’d like to see her use that MacBook when she comes to ScienceOnline09 in January….
‘Experimental Heart’ – first novel by Jennifer Rohn
Jennifer Rohn’s first lab lit novel, ‘Experimental Heart‘ is now available for sale! It is described as “A literary thriller/romance set in the London research scene, ‘Experimental Heart’ is a thought-provoking, page-turning lab adventure that exposes the hidden world of modern scientists”:
During his many long nights in the lab, scientist Andy O’Hara has plenty of time to wonder about the mysterious and beautiful Gina, first glimpsed in a lit window across the courtyard. He doesn’t realize she is consumed by her vaccine research, concerned about her biotech company’s financial problems, and about to become the prime target of animal rights activists. She is also distracted by a charming pharmaceutical mogul who offers funding for her work and a glamorous escape from her past mistakes.
When Andy finally meets Gina, his monotonous life starts to unravel. Soon he becomes embroiled in an increasingly complex web of deception as he scrambles to discover his rival’s true intentions. When Gina abruptly disappears, Andy sets off to find her. But is it too late? Is there a more sinister reason behind Gina’s involvement with the company? Is Gina’s vaccine all it appears to be? And is Andy ready to acknowledge that there is more to life than work?
Narrated with Andy’s irreverent view of a profession that both fascinates and frustrates him, Experimental Heart is an engaging romantic thriller set against the backdrop of contemporary scientific research.
As you know, Jennifer is this year’s guest editor of Open Laboratory. You can buy the book and get more information at:
– Amazon.com
– Amazon.co.uk
– Publisher’s sale site
– Press release
Posted in Books
This is why….
…to this day, every time I walk through the front door, I say, I ALWAYS say: “Honey, I’m home!”
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Posted in Fun
My picks from ScienceDaily
Ageism More Prevalent Than Racism Among Presidential Voters, Study Finds:
An ongoing study by UCLA and Stanford University researchers of 20,000 registered voters has found that far more of them would vote against Sen. John McCain because of his age than would vote against Sen. Barack Obama because of his race.
Does Your Personality Influence Who You Vote For?:
Does your personality influence who you vote for? The short answer is yes, according to John Mayer, professor of psychology at the University of New Hampshire. As Americans go to the polls in record numbers to vote for the next U.S. president, some voters will crave social stability and others will crave social change. Liberals and conservatives divide according to these personality preferences.
Ultrasound Shown To Exert Remote Control Of Brain Circuits:
In a twist on nontraditional uses of ultrasound, a group of neuroscientists at Arizona State University has developed pulsed ultrasound techniques that can remotely stimulate brain circuit activity.
Posted in Science News
Clock Quotes
Each time a man stands up for an ideal, or acts to improve the lot of others, or strikes out against injustice, he sends forth a tiny ripple of hope … and crossing each other from a million different centers of energy and daring those ripples build a current that can sweep down the mightiest walls of oppression and resistance.
– Robert F. Kennedy
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Posted in Clock Quotes
The Best of October
The monthly recap of posts I liked, but you may have missed. Lotsa politics, understandably, but not all – I did manage to post some other cool stuff as well. Where are the SuperReaders when one needs them?!
From Telecommuting to Coworking
Bloggers at the Zoo – movies #10
Offal is Good
Wikipedia, just like an Organism: clock genes wiki pages
Politics of Animal Protection
What insect is this?
Carrboro Citizen – a model for the newspaper of the future
The Nobel Prize conundrum
Open Access Day – the blog posts
And the Winner is…..!
Quick ConvergeSouth08 recap
Obama-McCain race – a Serbian parallel lesson?
Clay Shirky: It’s Not Information Overload. It’s Filter Failure.
Smoke Signals, Blogs, and the Future of Politics
Publishing and Communicating Science
Palin, autism and fruitflies – it does not add up
Lawrence Lessig for Copyright Czar!
Small Town Fear Itself – the Zombie Attack!
Information vs. Knowledge vs. Expertise
In today’s ‘Guardian’
Reading Recommendation for today
Atheists – the last U.S. minority that can be openly maligned without consequence
Open Laboratory 2008 – just one month left for your entries!
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Posted in Blogging, Housekeeping
27 Best Deep-Sea Species, take two
The list is now final. Here are the top 13:
#13 Deep-sea corals
#12: Yeti Crab
#11 Venus’s Flower Basket
#10: Echinothuriid Sea Urchins
#9: Bathynomus, the GIANT ISOPOD!!!!
#8 Red Lure Jellyfish
#7 Predatory Tunicates
#6: Giant Sea Spiders
#5 Barreleye Fish
#4 Gold-Footed or Scaly Foot Snail
#3 Flesh Eating Sponges
#2: Bone-Devouring Zombie Worms from Hell
#1 Vampire Squid
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Posted in Basic Biology, Ecology, Environment, Invertebrates
So, my question is how birds, insects, worms, frogs and fish do it?
An Evolutionary Look at Sperm Holds Secrets of Mobility, Fertility:
The fusion of sperm and egg succeeds in mammals because the sperm cells hyperactivate as they swim into the increasingly alkaline female reproductive tract. One fast-moving sperm drives on through the egg’s fertilization barrier.
Mammals have sperm with a tail that reacts when calcium ions enter a microscopic channel in the tail and make the sperm go into overdrive. In fact, four genes are needed to produce the so-called CatSper ion channel in the sperm tail that hypermotivates the sperm. The CatSper genes may someday be targeted in a male contraceptive: no calcium-ion channel gene = no sperm hyperactivity = no fertilization (infertility correlation to the gene blockage has been proven in mice).
The interesting thing is that mammals, reptiles, sea urchins, and even some primitive lower invertebrates, animals without backbones, have all of these four genes, while birds, insects, worms, frogs, and most fish species, do not, says co-author Xingjiang Cai, M.D., Ph.D., of the Duke Department of Cell Biology and the Duke Department of Medicine, in the Division of Cardiology.
The research is reported in: Cai X, Clapham DE (2008) Evolutionary Genomics Reveals Lineage-Specific Gene Loss and Rapid Evolution of a Sperm-Specific Ion Channel Complex: CatSpers and CatSperβ. PLoS ONE 3(10): e3569. doi:10.1371/journal.pone.0003569
Abstract: The mammalian CatSper ion channel family consists of four sperm-specific voltage-gated Ca2+ channels that are crucial for sperm hyperactivation and male fertility. All four CatSper subunits are believed to assemble into a heteromultimeric channel complex, together with an auxiliary subunit, CatSperβ. Here, we report a comprehensive comparative genomics study and evolutionary analysis of CatSpers and CatSperβ, with important correlation to physiological significance of molecular evolution of the CatSper channel complex. The development of the CatSper channel complex with four CatSpers and CatSperβ originated as early as primitive metazoans such as the Cnidarian Nematostella vectensis. Comparative genomics revealed extensive lineage-specific gene loss of all four CatSpers and CatSperβ through metazoan evolution, especially in vertebrates. The CatSper channel complex underwent rapid evolution and functional divergence, while distinct evolutionary constraints appear to have acted on different domains and specific sites of the four CatSper genes. These results reveal unique evolutionary characteristics of sperm-specific Ca2+ channels and their adaptation to sperm biology through metazoan evolution.
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Posted in Basic Biology, Physiology, Reproductive Health
Spring Forward, Fall Back – should you watch out tomorrow morning?
If you live in (most places in) the United States as well as many other countries, you have reset your clocks back by one hour last night (or last week). How will that affect you and other people?
One possibility is that you are less likely to suffer a heart attack tomorrow morning than on any other Monday of the year. Why? Let me try to explain in as simple way as possible (hoping that oversimplification will not lead to intolerable degrees of inaccuracy).
Almost all biochemical, physiological and behavioral parameters in almost all (at least multicellular) organisms display diurnal (daily) rhythms and most of those are directly driven by the circadian clock (or, more properly, by the circadian system). Here is an old and famous chart displaying some of the peaks (acrophases) of various physiological functions in the human:
It may be a little fuzzy, but you can see that most of the peaks associated with the cardiovascular function are located in the afternoon. The acrophases you see late at night are for things like “duration of systole” and “duration of diastole” which means that the Heart Rate is slow during the night. Likewise, blood pressure is low during the night while we are asleep.
Around dawn, heart rate and blood pressure gradually rise. This is a direct result of the circadian clock driving the gradual rise in plasma epinephrine and cortisol. All four of those parameters (HR, BP, Epinephrine and Cortisol) rise roughly simultaneously at dawn and reach a mini-peak in the morning, at the time when we spontaneously wake up:
This rise prepares the body for awakening. After waking up, the heart parameters level off somewhat and then very slowly rise throughout the day until reaching their peak in the late afternoon.
Since the four curves tend to be similar and simultaneus in most cases in healthy humans, let’s make it easier and clearer to observe changes by focusing only on the Cortisol curve in the morning, with the understanding that the heart will respond to this with the simultaneous rise in heart rate and blood pressure. . This is how it looks on a day when we allow ourselves to wake up spontaneously:
But many of us do not have the luxury of waking up spontaneously every day. We use alarm clocks instead. If we set the alarm clock every day to exactly the same time (even on weekends), our circadian system will, in most cases (more likely in urban than rural areas, though), entrain to the daily Zeitgeber – the ring of the alarm-clock – with a particular phase-relationship. This usually means that the rise in cardiovascular parameters will start before the alarm, but will not quite yet reach the peak as in spontaneous awakening:
The problem is, many of us do not set the alarm clocks during the weekend. We let ourselves awake spontaneously on Saturday and Sunday, which allows our circadian clock to start drifting – slowly phase-delaying (because for most of us the freerunning period is somewhat longer than 24 hours). Thus, on Monday, when the alarm clock rings, the gradual rise of cortisol, heart rate and blood pressure will not yet be as far along as the previous week. The ring of the alarm clock will start the process of resetting of the circadian clock – but that is the long-term effect (may take a couple of days to complete, or longer.).
The short term effect is more dramatic – the ring of the alarm clock is an environmental stressor. As a result, epinephrine and cortisol (the two stress hormones) will immediately and dramatically shoot up, resulting in an instantenuous sharp rise in blood pressure and heart rate. And this sharp rise in cardiovascular parameters, if the heart is already damaged, can lead to a heart attack. This explains two facts: 1) that heart attacks happen more often on Mondays than other days of the week, and 2) that heart attacks happen more often in the morning, at the time of waking up, than at other times of day:
Now let’s see what happens tomorrow, the day after the time-change. Over the weekend, while you were sleeping in, your circadian system drifted a little, phase delaying by about 20 minutes on average (keep in mind that this is an average – there is a vast variation in the numerical value of the human freerunning circadian period). Thus, your cardiovascular parameters start rising about 20 minutes later tomorrow morning than last week. But, your alarm clock will ring an entire hour later than last week – giving you an average of a 40-minute advantage. Your heart will be better prepared for the stress of hearing the ringing than on any other Monday during the year:
Now let’s fast-forward another six month to the Spring Forward weekend some time in March or April of next year. Your circadian system delays about 20 minutes during the weekend. On top of that, your alarm clock will ring an hour earlier on that Monday than the week before. Thus, your cardiovascular system is even further behind (80 minutes) than usual. The effect of the stress of the alarm will be thus greater – the rise in BP and HR will be even faster and larger than usual. Thus, if your heart is already damaged in some way, your chances of suffering an infarct are greater on that Monday than on any other day of the year:
This is what circadian theory sugests – the greater number of heart attacks on Mondays than other days of the week (lowest during the weekend), the greatest number of heart attacks on the Monday following the Spring Forward time-change compared to other Mondays, and the lowest incidence of heart attacks on the Monday following the Fall Back time-change compared to other Mondays.
A couple of days ago, a short paper appeared that tested that theoretical prediction and found it exactly correct (Imre Janszky and Rickard Ljung, October 30, 2008, Shifts to and from Daylight Saving Time and Incidence of Myocardial Infarction, The New England Journal of Medicine, Volume 359:1966-1968, Number 18.). The authors looked at a large dataset of heart attacks in Sweden over a large period of time and saw that (if you look at the numbers) the greatest number of heart attacks happens on Mondays compared to other days of the week (and yes, the numbers are lowest during the weekend), the greatest number of heart attacks occur on the Monday following the Spring Forward time-change compared to Mondays two weeks before and after, and the lowest incidence of heart attacks happens on the Monday following the Fall Back time-change compared to Mondays two weeks before and after:
Thus, the predictions from the circadian theory were completely and clearly correct. But I was jarred by the conclusions that the authors drew from the data. They write:
The most plausible explanation for our findings is the adverse effect of sleep deprivation on cardiovascular health. According to experimental studies, this adverse effect includes the predominance of sympathetic activity and an increase in proinflammatory cytokine levels.3,4 Our data suggest that vulnerable people might benefit from avoiding sudden changes in their biologic rhythms.
It has been postulated that people in Western societies are chronically sleep deprived, since the average sleep duration decreased from 9.0 to 7.5 hours during the 20th century.4 Therefore, it is important to examine whether we can achieve beneficial effects with prolonged sleep. The finding that the possibility of additional sleep seems to be protective on the first workday after the autumn shift is intriguing. Monday is the day of the week associated with the highest risk of acute myocardial infarction, with the mental stress of starting a new workweek and the increase in activity suggested as an explanation.5 Our results raise the possibility that there is another, sleep-related component in the excess incidence of acute myocardial infarction on Monday. Sleep-diary studies suggest that bedtimes and wake-up times are usually later on weekend days than on weekdays; the earlier wake-up times on the first workday of the week and the consequent minor sleep deprivation can be hypothesized to have an adverse cardiovascular effect in some people. This effect would be less pronounced with the transition out of daylight saving time, since it allows for additional sleep. Studies are warranted to examine the possibility that a more stable weekly pattern of waking up in the morning and going to sleep at night or a somewhat later wake-up time on Monday might prevent some acute myocardial infarctions.
And in the quotes in the press release they say the same thing, so it is not a coincidence:
“It’s always been thought that it’s mainly due to an increase in stress ahead of the new working week,” says Dr Janszky. “But perhaps it’s also got something to do with the sleep disruption caused by the change in diurnal rhythm at the weekend.”
Dr.Isis has already noted this and drew the correct conclusion. She then goes on to say something that is right on the mark:
And, of course, my first thought is, what about all the other times we are sleep deprived by, you know, one hour. Is waking up in the middle of the night to feed Baby Isis potentially going to cause Dr. Isis to meet her maker early? In that case Baby Isis can freakin’ starve. But, this is the New England Journal of Medicine and Dr. Isis appreciates the innate need that authors who publish here have to include some clinical applicability in their work.
The authors responded to Dr.Isis in the comments on her blog and said, among else:
We wonder whether you have ever tried to publish a research letter somewhere. The number of citations (maximum 5!) and the number of words are strictly limited. Of course we are familiar with studies on circadian rhythms and cardiovascular physiology. There was simply no space to talk more about biological rhythms than we actually did.
But what they wrote betrays that even if they are familiar with the circadian literature, they do not really understand it. Nobody with any circadian background ever speculates about people’s conscious expectations of a stressful week as a cause of heart attacks on Monday mornings. Let me try to explain why I disagree with them on two points they raise (one of which I disagree with more strongly than the other).
1) Sleep Deprivation. It is important to clearly distinguish between the acute and the chronic sleep deprivation. Sleepiness at any given time of day is determined by two processes: a homeostatic drive that depends on the amount of sleep one had over a previous time period, and a circadian gating of sleepiness, i.e., at which time of day is one most likely to fall asleep. Sleep deprivation affects only the homeostatic drive and has nothing to do with circadian timing.
Humans, like most other animals, are tremendously flexible and resilient concerning acute sleep deprivation. Most of us had done all-nighters studying for exams, or partying all night with non ill effects – you just sleep off the sleep debt the next day or the next weekend and you are fine. Dr.Isis is not going to die because her baby wakes her up several times during the night. This is all part of a normal human ecology, and human physiology had adapted to such day-to-day variations in opportunities for sleep.
The Chronic sleep deprivation is a different animal altogether. This means that you are getting less sleep than you need day after day, week after week, month after month, year after year, with rarely or never sleeping off your sleep debt (“catching up on sleep”). As a result, your cognitive functions suffer. If you are a student, you will have difficulties understanding and retaining the material. If you are a part of the “creative class”, you will be less creative. If you are a scientist, you may be less able to clearly think through all your experiments, your data, and your conclusions. No matter what job you do, you will make more errors. You may suffer microsleep episodes while driving and die in a car wreck. Your immune system will be compromised so you will constantly have sniffles and colds, and may be more susceptible to other diseases.
And yes, a long term chronic sleep deprivation may eventually damage your heart to the extent that you are more susceptible to a heart attack. This means that you are more likely to suffer a heart attack, but has no influence on the timing of the heart attack – it is the misalignment between the natural circadian rhythms of your body and the social rhythms imposed via a very harsh stressor – the alarm clock – that determines the timing. Being sleep deprived over many years means you are more likely to have a heart attack, but cannot determine when. Losing just one hour of sleep will certainly have no effect at all.
Thus, the data presented in the paper have nothing to say about sleep deprivation.
2) Cytokines. These are small molecules involved in intercellular signaling in the immune system. Like everything else, they are synthesized in a diurnal manner. But they act slowly. Maybe they play some small part in the gradual damage of the heart in certain conditions (prolonged inflammation, for instance), thus they may, perhaps, have a role in increasing risk of a heart attack. But they play no role in timing of it. Thus they cannot be a causal factor in the data presented in the paper which are ONLY about timing, not the underlying causes. The data say nothing as to who will suffer a heart attack and why, only when you will suffer one if you do.
If I was commissioned to write a comprehensive review of sleep deprivation, I may have to force myself to wade through the frustratingly complicated and ambiguous literature on cytokines in order to write a short paragraphs under a subheading somewhere on the 27th page of the review.
If I had a severe word-limit and needed to present the data they showed in this paper, I would not waste the space by mentioning the word “cytokine” at all (frankly, that would not even cross my mind to do) as it is way down the list of potential causes of heart attack in general and has nothing to do with the timing of heart attacks at all, thus irrelevant to this paper.
So, it is nice they did the study. It confirms and puts clear numbers on what “everybody already knew for decades” in the circadian community. But their interpretation of the data was incorrect. This was a purely chronobiological study, yet they chose to present it as a part of their own pet project instead and tried mightily to make some kind of a connection to their favourite molecules, the cytokines, although nothing warranted that connection. Nails: meet hammer.
The fake-insulted, haughty and inappropriate way/tone they responded to Dr.Isis is something that is important to me professionally, as is there misunderstanding of both the role and the tone of science blogs, so I will revisit that issue in a separate post later. I promise. It is important.
But back to Daylight Saving Time. First, let me ask you (again) to see Larry’s post from last year, where you will find a lot of useful information and links about it. What is important to keep in mind is that DST itself is not the problem – it is the time-changes twice a year that are really troubling.
Another important thing to keep in mind is that DST was instituted in the past at the time when the world looked very different. At the time when a tiny sliver of the population is still involved in (quite automated and mechanized) agriculture, when electricity is used much more for other things than illumination (not to mention that even the simple incandescent light bulbs today are much more energy efficient than they used to be in the past, not to mention all the newfangled super-efficient light-bulbs available today), when many more people are working second and third shifts than before, when many more people work according to their own schedules – the whole idea of DST makes no sense any more.
Even if initially DST saved the economy some energy (and that is questionable), it certainly does not do so any more. And the social cost of traffic accidents and heart attacks is now much greater than any energy savings that theoretically we may save.
Furthermore, it now seems that circadian clocks are harder to shift than we thought in the past. Even that one-hour change may take some weeks to adjust to, as it is not just a singular clock but a system – the main pacemaker in the SCN may shift in a couple of days, but the entire system will be un-synchronized for some time as it may take several weeks for the peripheral clocks in the liver and intestine to catch up – leading to greater potential for other disorders, e.g., stomach ulcers.
The social clues (including the alarm clocks) may not be as good entraining agents as we thought before either, especially in rural areas where the natural lighting still has a profound effect.
Finally, the two time-change days of the year hit especially hard people with Bipolar Disorder and with Seasonal Affective Disorder – not such a small minority put together, and certainly not worth whatever positives one may find in the concept of DST. We should pick one time and stick with it. It is the shifts that cost the society much more than any potential benefits of DST.
Related reading:
Daylight Saving Time
Daylight Savings Time worse than previously thought
Time
Sun Time is the Real Time
Seasonal Affective Disorder – The Basics
Lesson of the Day: Circadian Clocks are HARD to shift!
Lithium, Circadian Clocks and Bipolar Disorder
Everything You Always Wanted To Know About Sleep (But Were Too Afraid To Ask)
Posted in Chronobiology, Clock News, Mis-clock-ceptions, Rhythmic Human, Sleep
On Voting
Vote early and vote often.
– Al Capone, 1899 – 1947
Suffrage, n. Expression of opinion by means of a ballot. The right of suffrage (which is held to be both a privilege and a duty) means, as commonly interpreted, the right to vote for the man of another man’s choice, and is highly prized.
– Ambrose Bierce, The Devil’s Dictionary, 1881 – 1906
Ask a man which way he is going to vote, and he will probably tell you. Ask him, however, why, and vagueness is all.
– Bernard Levin
Truth is not determined by majority vote.
– Doug Gwyn
Always vote for principle, though you may vote alone, and you may cherish the sweetest reflection that your vote is never lost.
– John Quincy Adams, 1767 – 1848
My problem is that, with the two-party system, you only get to vote against one candidate in each race.
– G. Armour Van Horn
From Quotes of the Day
Clock Quotes
$100 invested at 7% interest for 100 years will become $100,000, at which time it will be worth absolutely nothing.
– Robert Anson Heinlein
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Posted in Clock Quotes
Today’s carnivals
Carnival of Evolution #5 is up on The Other 95%
Berry Go Round #10 is up on 10000birds
Festival of the Trees #29 is up on Via Negativa
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Posted in Carnivals
ScienceOnline09 – an Interview with Brian Switek

Here is the fifth interview in the series on Miss Baker’s Biology class blog – Stephen’s interview with Brian Switek.
Previously in this series:
ScienceOnline09 – an interview with…me!
ScienceOnline09 – an interview with Eric Roston
ScienceOnline09 – an interview with Clinton Colmenares
ScienceOnline09 – an interview with Erica Tsai
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Posted in SO'09
My picks from ScienceDaily
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Posted in Science News
A month for writing
Choose one:
NaNoWriMo
InaDWriMo
NaBloPoMo
Then sit down and write something every day – a novel, an academic piece, or a blog post.
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Posted in Blogging
Your weekend politics
Annals of McCain – Palin, XLI: how I palled around with terrorists:
No one who knows me would ever consider me a domestic terrorist. I am, in fact, a pacifist. You may think that’s naive, but it would be a real stretch to consider my pacifism to be the same as terrorism, even if you think it helps terrorism (in which case I strenuously disagree). I’m a doctor and take the responsibility to heal pretty seriously. Barack Obama is being accused of “palling around with terrorists” because he has had an association with people the McCain campaign decided they want to call domestic terrorists purely for the purpose of inferring guilt — guilt, literally, by association. So in the interests of full disclosure and for the purpose of making a clear statement, I declare that by their standard I’ve palled around with a few domestic terrorists in my time. Most of them weren’t terrorists at all. Not by any stretch of the imagination. I’ll concede some could plausibly be described as low level domestic terrorists. Like Bill Ayres. Although I don’t know Bill Ayres from a hole in the wall, I may indeed have “palled around with him” once. I have no idea. Here’s the story.
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Posted in Politics
Sarah Palin pranked by a Canadian shock jock
At first I thought this was fake, but apparently the call was real. If true – what a moment!
Posted in Politics
Clock Quotes
You don’t tell deliberate lies, but sometimes you have to be evasive.
– Margaret Thatcher
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Posted in Clock Quotes
Happy Hallo-Meme
After making several potential designs in silico, my daughter chose one and we carved it. In order to participate in the Happy Hallo-Meme, we brought out the camera – first picture immediately after, the second once the darkness arrived and we lit up the candle inside:
Of course, Juno in costume was a hit with neighbors….
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Posted in Fun
Strikes a chord….
Mathematician Cracks Mystery Beatles Chord:
It’s the most famous chord in rock ‘n’ roll, an instantly recognizable twang rolling through the open strings on George Harrison’s 12-string Rickenbacker. It evokes a Pavlovian response from music fans as they sing along to the refrain that follows:
It’s been a hard day’s night
And I’ve been working like a dog
The opening chord to A Hard Day’s Night is also famous because for 40 years, no one quite knew exactly what chord Harrison was playing. Musicians, scholars and amateur guitar players alike had all come up with their own theories, but it took a Dalhousie mathematician to figure out the exact formula.
OK, that is all very nice – but: where is the chord!? I want to play it. Now. Come on, don’t be selfish – publish it somewhere online for all of us!
Posted in Science News
New and Exciting in PLoS this week
So, let’s see what’s new in PLoS Genetics, PLoS Computational Biology, PLoS Pathogens, PLoS ONE and PLoS Neglected Tropical Diseases this week. As always, you should rate the articles, post notes and comments and send trackbacks when you blog about the papers. Here are my own picks for the week – you go and look for your own favourites:
Curling Up with a Story: An Interview with Sean Carroll:
To meet Sean Carroll on his home turf in the early spring of Wisconsin is like encountering a bear cuddled up in his lair, waiting out the cold winter. I burrowed into the softly lit cave of small offices, with stalactites of yellow post-its dripping from every imaginable surface. Tiptoeing over misaligned stacks of books and reprints, I had to resist the urge to pick up one of the worn works, settle into a corner, and join in the reverie.
Carroll is an expert in the field known as “evo devo,” an amalgam of developmental molecular biology as applied to the workings of animal evolution. Following his initial work with fushi tarazu (ftz)–one of the segmentation genes in the Antennapedia complex of Drosophila–he has been instrumental in elaborating the developmental regulation and interaction of a variety of genes, at first in the developing embryo, and later in the genesis of leg and wing appendages. A chance encounter fueled his long-standing interest in evolution and prompted him to re-tool his lab for the study of butterfly wing development; comparison between the two species led to groundbreaking insights into the subtle evolutionary changes that can give rise to spectacularly different appearances.
Waterfowl–The Missing Link in Epidemic and Pandemic Cholera Dissemination?:
Cholera, a life-threatening diarrhoeal disease, has afflicted human beings and shaped human history for over two millennia. The disease still kills thousands of people annually. Vibrio cholerae, the etiologic agent of cholera, is endemic to aquatic environments [1], but despite intensive research efforts its ecology remains an enigma. The fatal effects of cholera are mainly due to the toxin produced by specific serogroups (O1 and O139) of V. cholerae [1]. Strains of V. cholerae that belong to serogroups other than O1 and O139, collectively referred to as the non-O1, non-O139 V. cholerae, have also been implicated as etiologic agents of moderate to severe human gastroenteritis [2]. The disease is endemic in Southern Asia and in parts of Africa and Latin America, where outbreaks occur widely and are closely associated with poverty and poor sanitation. The epidemic strains spread across countries and continents over time, giving rise to cholera pandemics [1]. It has been suggested that zooplankton function as a carrier of V. cholerae via ocean currents. However, the mechanism that enables V. cholerae to cross freshwater bodies within a continent, as well as oceans between continents, remains unknown. Here, we put forward a strongly neglected hypothesis that deserves more attention, and discuss evidence from the scientific literature that supports this notion: migratory water birds are possible disseminators of V. cholerae within and between continents.
There is considerable interest from the wider scientific community in the heritability of epigenetic states across generations, and this has arisen as a result of a series of studies in mice [1],[2], flies [3], plants [4],[5], and yeast [6] over the past decade. These studies have identified genetic elements at which epigenetic states appear to be inherited through meiosis. The Lamarckian implications of these findings are hard to avoid. Transgenes, transposons, and other “foreign DNA” appear to be particularly prone to transgenerational epigenetic inheritance (reviewed in [7]). In this issue of PLoS Genetics, Singh et al. [8] describe the identification of a locus in the genome of maize at which a transposon, silenced by an RNAi-based mechanism, becomes reactivated over subsequent generations. This article reports an activating “position effect,” i.e., an integration site that is associated with the reversal of a previously established silent state in plants.
Genetic and Linguistic Coevolution in Northern Island Melanesia:
The coevolution of genes and languages has been a subject of enduring interest among geneticists and linguists. Progress has been limited by the available data and by the methods employed to compare patterns of genetic and linguistic variation. Here, we use high-quality data and novel methods to test two models of genetic and linguistic coevolution in Northern Island Melanesia, a region known for its complex history and remarkable biological and linguistic diversity. The first model predicts that congruent genetic and linguistic trees formed following serial population splits and isolation that occurred early in the settlement history of the region. The second model emphasizes the role of post-settlement exchange among neighboring groups in determining genetic and linguistic affinities. We rejected both models for the larger region, but found strong evidence for the post-settlement exchange model in the rugged interior of its largest island, where people have maintained close ties to their ancestral lands. The exchange (particularly genetic exchange) has obscured but not completely erased signals of early migrations into Island Melanesia, and such exchange has probably obscured early prehistory within other regions. In contrast, local exchange is less likely to have obscured evidence of population history at larger geographic scales.
Of Asian Forests and European Fields: Eastern U.S. Plant Invasions in a Global Floristic Context:
Biogeographic patterns of species invasions hold important clues to solving the recalcitrant ‘who’, ‘where’, and ‘why’ questions of invasion biology, but the few existing studies make no attempt to distinguish alien floras (all non-native occurrences) from invasive floras (rapidly spreading species of significant management concern), nor have invasion biologists asked whether particular habitats are consistently invaded by species from particular regions. Here I describe the native floristic provenances of the 2629 alien plant taxa of the Eastern Deciduous Forest of the Eastern U.S. (EUS), and contrast these to the subset of 449 taxa that EUS management agencies have labeled ‘invasive’. Although EUS alien plants come from all global floristic regions, nearly half (45%) have native ranges that include central and northern Europe or the Mediterranean (39%). In contrast, EUS invasive species are most likely to come from East Asia (29%), a pattern that is magnified when the invasive pool is restricted to species that are native to a single floristic region (25% from East Asia, compared to only 11% from northern/central Europe and 2% from the Mediterranean). Moreover, East Asian invaders are mostly woody (56%, compared to just 23% of the total alien flora) and are significantly more likely to invade intact forests and riparian areas than European species, which dominate managed or disturbed ecosystems. These patterns suggest that the often-invoked ‘imperialist dogma’ view of global invasions equating invasion events with the spread of European colonialism is at best a restricted framework for invasion in disturbed ecosystems. This view must be superseded by a biogeographic invasion theory that is explicitly habitat-specific and can explain why particular world biotas tend to dominate particular environments.
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Posted in Science News








