Science Blogging of the Fortnight

Tangled Bank 72: What’s in a name? Read the best of last two weeks’ science blogging on Ouroboros.

Is it possible to collect enough this way?

Graduate school is expensive, even with grants and loans. Perhaps if a lot of A-listers linked to this, it could be possible to collect enough. (via Chickpea Science)

My picks from ScienceDaily

Student’s Research With Disney Giraffes May Help Conserve Several Species:

University of Central Florida doctoral student Jennifer Fewster is studying giraffe excrement at Disney’s Animal Kingdom Lodge in Lake Buena Vista in an effort to figure out what the animals eat in the wild and to improve the nutrition of those in captivity.
Fewster’s research, conducted in January and February, could potentially help conserve a wide array of herbivores, including endangered ones.
“I find it fascinating, but I forget people find it odd,” Fewster said. “It’s not the most glamorous work. In fact, it can be a bit boring at times, but the goal is worthwhile and it has applications for the wild and for the better care and nutrition of animals in captivity.”

More….

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Clock Quotes

Regret for wasted time is more wasted time.
Mason Cooley, O Magazine, April 2004

Network-like Mode of Thinking

I am so glad to see that conversations started face-to-face at the Science Blogging Conference are now continuing online (see the bottom of the ever-growing linkfests here and here). While some are between science bloggers, as expected, others are between people who have never heard of each other before and who came from very different angles and with different interests. The cross-fertilization we hoped for is happening (and if you had such an experience, let us know)!
See, for instance, what a casual chat over lunch at the Conference did to David Warlick – made him think about education and about online technologies from a – new to David – perspective of someone who watches the way scientists think:

…He said that science used to be reductionist in nature. I asked what that meant, and he said that science was about drilling down to components, cutting out and examining bits of the world, reducing it to its barest fundamentals. He said that the younger scientists spend more time synthesizing, that they seem much more interested in systems and networks, not so much how things operate independently, but how they operate as part of a larger organism, ecosystem, or cosmos.
I suspect that all kinds of speculation might be made about why science seems, at least in the eyes of this science communicator, to be shifting, and one could probably make a case relating it to younger scientists’ digital experiences. The connection that occurred to me, however, was with schools, which seem to me to be in a reductionist mode still…..
——–snip————-
My own state, for one, has been teaching and testing computer skills for more than ten years. However, it is a reductionist response to the need for digital literacy (what I call contemporary literacy). We have reduced computer skills out into their own list of standards, separated again into objectives, and performance indicators. We’ve reduced it down to components that can be discretely measured.
I don’t think that this happens entirely because of the industrial mechanized environment that many of us come from. I think it’s just easier to separate things out and teach them in isolation, especially when we believe that our job is to simply teach.

Read the rest…then go and comment on his blog with your ideas. Cross-fertilize some more!
Technorati Tag:

EduBlogging of the week

Teaching Carnival #19 is up on Scribblingwoman
The 104th Carnival of Education is up on The Median Sib
57th Carnival of Homeschooling is up on PalmTree Pundit

But can you…

…handle the Truth?

Copycats!

Ha! We broke the ice and now others are following our example. The Best of Technology Writing 2007 is being planned (hat-tip: Pimm).
I think this is great! Biotech articles are welcome as well, so send in your faves for consideration. Of course, they are a little timid – non-blog articles can also be included, and they intend to work on it for something like nine months! I guess they are not nuts like me….
What is next? Medical Blogging Anthology? Who is going to spearhead that project?

Blogrolling – added today

Scientia Natura: Evolution And Rationality

Blogfish

Agricultural Biodiversity Weblog

1Third

Live-awake

Weblog

Eco-Chick

A History of Histrionics

Scaryduck

The Beagle Project Blog

Slow Down Now

Blackprof

Eyeteeth

The Southern Fried Skeptic

Spewing Truth in the face of lies

Insufficiently advanced

CUTE THINGS FALLING ASLEEP

Snoozester

The Most Fantastic Blogospheric News of the Day (or longer)!

Amanda Marcotte of Pandagon, the quickest draw of the Internets, the master of witty blog titles, and the scourge of mysoginists worldwide (like my regulars could avoid my almost-daily links to Pandagon and don’t know who she is…), has just become the Blogmaster of the John Edwards campaign blog. Some of the bestest, snarkiest bloggers are joining Pandagon at the same time. And Amanda is moving to Chapel Hill so we finally get to meet! Waaaaay tooooo cooool!

MedBlogging of the Week

Grand Rounds: 3.19 are now up on Envisioning 2.0

We Get Mail…

[Pushed to the top of the page due to interesting updates…]
Ah, the perils of growing traffic! I get e-mail. Usually those are nice questions about sleep disorders, or requests for link exchanges. But today I got a christianist. Oy vey!
I hope I never get PZ’s traffic – I guess he gets dozens of those a day! And I don’t even bash religion on my blog every day like he does.
Below the fold is the exchange so far:

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Teen Parenthood for the X-box generation

Teen Parenthood for the X-box generationParenting is hard. Are you ready (re-posted from October 20, 2005)

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My picks from ScienceDaily

As always, see how well the press release matches the actual paper:

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Clock Quotes

If you can’t sleep, then get up and do something instead of lying there and worrying. It’s the worry that gets you, not the loss of sleep.
Dale Carnegie

Around The Science Blogs….

The ‘Basic Concepts in Science” list is getting longer and longer every couple of hours or so, it seems. Try to keep up with it. You may even want to Google-bomb (by linking using the same words as Wilkins does) some or all of the posts if you think they should come up on top in Google searches for these terms. Dan adds his own contribution on Cell Migration and Jennifer makes a wish-list for the Top Ten Physics Concepts that need to be included. To those, I’d add the series on statistics by ECHIDNE OF THE SNAKES: Part 1: Samples, Part 2: Probability, Part 3: Sample Statistics, Part 4: Sampling Distributions and Part 5: Constructing a Confidence Interval for the Sample Proportion.
If you know of an open-source, open-access journal that is not on this list, let Jackie know about it. Let’s fight the nasty anti-open-science PR!
Are you an Academic? And male? If so, you may be a ‘babe magnet’. Or not (Dr.Petra is an expert in administering cold showers).
Are you going to take the blog course on Joys of Science along with Zuska?
Magical Properties of Water (bought last week in my neighborhood): Part 1 and Part 2. Scooped Orac for the Friday Dose Of Woo series this week!
Vaughn of Mind Hacks is not surprised that ‘sleep’ is on the Wired Magazine’s list of 42 biggest unanswered questions in science. Though I’d say the magazine’s short blurb is at least mammalocentric if not entirely anthropocentric, as well as mildly adaptationist. After all, we have no idea why fruitflies sleep!
Alon Levy nicely rips into Steven Pinker, over on 3 Quarks Daily. Interestingly, he is stil linking back to his old flop-of-a-post on Lewontin that was debunked here.
There is a new group discussing Philosophy with emphasis on religion and Creationism. Catch up with them on their blog and forums.
John Hawks reviews a new paper on signalling in monkeys by Frans de Waal.
Everything you need to know about the Seismosaurus.
Pictures of some science bloggers at the conference last week. Can you recognize everyone? Perhaps this will help.

Chapel Hill-Carrboro Blogger Meetups – new time and place!

All the new information is here – four meetings over the next month: one in cyberspace, two in the Real World (sitting and sipping coffee) and one in the Real World (moving about and doing fun stuff).

She Has Good Instincts!

Kate Michelman, lifelong feminist and former head of NARAL, talks about why she’s signed up to work for John Edwards (click through the ad to read the entire thing):

….I think that says a lot about his seriousness and commitment to addressing the experiences of women in society. I think it speaks very well of him. And while I’ve been a leader on women’s liberties and equality, I’m known mostly for my work on reproductive rights, which could make a candidate feel somewhat reluctant or questioning. But it didn’t with John and Elizabeth.
I have often felt that in the past, campaigns have paid lip service to women, or treated them as a constituency. Well, excuse me. I hate to be treated as a constituency. We are people. We are a force, a vital centerpiece of society as a whole — and in the past I have felt insulted that issues of concern to women have been given only lip service. But John is doing anything but that. Bringing someone like me on board is a real statement about that…

Read the whole thing.

Responsible consumption of shrimp

I love seafood, but I eat it quite rarely. About a third of my old Department did fisheries and aquaculture science so I’ve seen many seminars and Thesis defenses on the topic and am quite aware of the problems with the world’s fisheries stocks.
I also prefer freshwater fish – I grew up on the Danube and my Mom fixes the best Fish Soup in the history of the Universe.
But, if you like seafood and you want to eat shrimp occasionally, yet you want to act in an environmentally responsible way, you need to know quite a lot about ecology, about behavior and natural history of shrimp, about the methods of harvesting and/or farming shrimp, about the way shrimp are processed and marketed. Armed with all that information, you’ll know where, when, how, how often and from whom to buy shrimp. It is not easy to find all that informaiton, but now you can find it all in one place.
Mark H (better known around science blogs as the person running the Biomes Blog), as a part of his marvelous Marine Life Series, has put it all together here.
He even provides a recipe at the end, which looks promising – I may try to use it one day, once I figure out how to find environmentaly not-so-bad shrimp around here.

NeuroBlogging of the fortnight

Encephalon #15: Neuroscience Blog Carnival is up on SharpBrains.

New potential sleeping pill

If you discover a brain chemical which, when missing or malfunctioning (due to a mutation in its receptor) abruptly puts people and animals to sleep when they don’t want to – a condition called narcolepsy – then you can work on creating a drug that acts in the opposite way and induces sleep when you want to.
Apparently, that is what a Swiss team just did (Nature news report here and Nature blog commentary here). The drug, still without a sexy name, is known by its “code-name” ACT-078573.
The target of the drug is the orexin system. Orexins (also known as hypocretins – the discovery was simultaneous in two laboratories several years ago and both terms are in equal use in the literature – you may remember one of the studies as it received some media coverage because it tested narcoleptic Doberman pinchers) are two closely related neuropeptides (orexin 1 and orexin 2). They are produced by cleavage of a single precursor protein. They are strongly conserved through the vertebrate evolution. They are produced in a small cluster of nerve cells, but those cells make projections widely across the brain.
The major function of orexins is to integrate circadian, sleep and metabolic information to determine if the animal should be awake or asleep. The connection to metabolism is also responsible for a secondary role of orexins in the control of appetite.
In narcoleptic people (or dogs), the levels of orexin are very low, or the orexin receptor is not functioning. In other words, the funciton of orexins is to promote wakefulness. ACT-078573 is an orexin antagonist – it blocks effects of orexin, thus promoting sleepiness.
It is too early to talk to your physician about this drug yet. This was just a first preliminary study. The drug was given only once, so we do not know possible effects of prolonged use. It was given to 42 healthy males with no history of sleep disorders, thus we do not know how it would effect women, children or people WITH sleep disorders – exactly those who would potentially benefit from this drug.
Just because a single use did not provoke other symptoms of narcolepsy – loss of muscle tone, loss of coordination and hallucinations – does not mean that long-term use of the drug would not result in such side-effects (after all, even the early narcoleptic events in affected people do not usually have such side-effects – they develop over time).
Another consideration is timing. In the study, the drug was given during the day when the orexin levels are naturally high (remember – orexin promotes wakefulness). We do not know what effect, if any, the orexin antagonist would have at night when orexin levels are naturally low. After all, as with all drugs targeting the circadian system, the effect is highly dependent on timing.
Another concern is with a possible side-effects of the drug on the appetite. Though this may be turned into a positive for the drug if it can be shown to be useful in control of appetite. Nothing sells better than sleep pills except the diet pills, after all!

Fish Eyes

Fish EyesLots of food blogging around here lately, so why not re-post this one (from October 27, 2005):

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Is it really counter-propaganda?

As a follow-up on the whole PETA brouhaha, my astute commenter oneproudaardvark notices that the SOTU-farce ad campaign by PETA is strangely coinciding with the beginning of the trial against PETA for butchering dogs in the back of the truck here in North Carolina. Cosmic synchronicity? Don’t think so….

Listen to my radio interview

You may remember last week I gave a radio interview. It is airing in Asheville area tonight but you can already listen to it on the Brainshrub blog.

Children’s Medicine Blogging of the Week

Pediatric Grand Rounds Volume 1 Edition 21: What Dreams May Come…..now up on Unintelligent Design

Anthology update

Now that the Anthology is arriving at people’s homes, getting read and even reviewed on blogs, I hope that more people will take a minute to post reviews or ratings on the actual book webpage. In one week, it has moved from non-existent to 33rd to 27th on the Lulu.com top sellers of the week list. I am also working on having the book more widely available, e.g., on sites like amazon.com and in independent bookstores.

My picks from ScienceDaily

Fruit Flies And Global Warming: Some Like It Hot:

Researchers working in Australia have discovered ways in which fruit flies might react to extreme fluctuations in temperature. Short-term exposure to high heat stress (“heat hardening”) has been known to have negative effects on Drosophila. But Loeschcke and Hoffmann discovered that it can have advantages too. Flies exposed to heat hardening were much more able to find their way to bait on very hot days than were the flies that were exposed to cooler temperatures, but the heat hardened flies did poorly on cool days.

Beating Heart Muscle With Built-In Blood Supply Created From Stem Cells:

Researchers at the Technion-Israel Institute of Technology have created new heart muscle with its own blood supply using human embryonic stem cells. The researchers say the newly engineered muscle could replace cardiac tissue damaged in heart attacks. Their study was published online January 11 in the journal Circulation Research.

Complex Channels: Scientists Discover How Ion Channels Are Organized To Control Nerve Cell Communication:

The messages passed in a neuronal network can target something like 100 billion nerve cells in the brain alone. These, in turn communicate with millions of other cells and organs in the body. How, then, do whole cascades of events trigger responses that are highly specific, quick and precisely timed? A team at the Weizmann Institute of Science has now shed light on this mysterious mechanism. Their discovery could have important implications for the future development of drugs for epilepsy and other nervous system diseases. These findings were recently published in the journal Neuron.
The secret is in the control over electrical signals generated by cells. These signals depend on ion channels — membrane proteins found in excitable cells, such as nerve cells — that allow them to generate electrical signals, depending on whether the channels are opened or closed. Prof. Eitan Reuveny, together with Ph.D. students Inbal Riven and Shachar Iwanir of the Weizmann Institute’s Biological Chemistry Department, studied channels that work on potassium ions and are coupled to a protein called the G protein, which when activated, causes the channel to open. Opening the channel inhibits the conductance of electrical signals, a fact that might be relevant, for example, in the control of seizures.

Clock Quotes

Time cools, time clarifies; no mood can be maintained quite unaltered through the course of hours.
Mark Twain (1835 – 1910)

Meta-meta-blogging

Yes, I know, I’ve been guilty on occasion of this nasty navel-gazing practice myself, but I was never this funny or this funny. Links discovered by Bitch PhD who also indulges herself in some meta-blogging about 18th century blogging. So, this post is meta-meta-meta-blogging itself, isn’t it?

Gene?

In the series of “Basic Concept And Terms” (yup, I know, John is well known for misspelling people’s last names, including mine), several people have already chimed in with their own definitions of the “gene”, demonstrating how unclear this concept is and how much disagreement there is among the practitioners depending on the type of research they are doing (e.g, molecular biology, developmental biology, population genetics, evolution, etc.).
See how the term was defined and explained by PZ, Sandra and Greg so far and you’ll see those differences in emphasis.
Now Larry Moran joins the fray with one post on what a gene is not (though many erroneously cling to this definition) and one post on what a gene is, at least from Larry’s perspective. Good reading altogether.

I was tagged…

…by Matt. No celebrity is very much look-alike with me (and I included only male faces to eliminate Lindsay Lohan’s childhood picture):

http://www.myheritage.com

Everyone’s a Little Bit Jewish

Since I think that Fiddler on the Roof is the best musical ever, of course I totally loved this:

(Found here by Joolya)
I blogged somewhere before (I cannot find it now – darned Google and Technorati are imperfect!) that I think that, upon arriving in America, the fourth daughter married a black guy and the fifth daughter married a woman. I never expected one to marry a puppet!

Blogrolling – added today

Since Katrina…

Women in Science

She’s Such A Geek

Street Anatomy

Tangled Up In Blue Guy

Common Ills

Sasa Radojcic

KoBSON

I did not know more people tuned in than to American Idol…

…because I was not one of them. But now, thanks to Ed Cone, I know what the State of the Union address was all about.

I hope they come in chocolate glazed version

Perhaps it’s time for me to get serious about eating doughnuts!
(Hat tip: Greg)

Of course…

What Kind of Reader Are You?

Your Result: Obsessive-Compulsive Bookworm

You’re probably in the final stages of a Ph.D. or otherwise finding a way to make your living out of reading. You are one of the literati. Other people’s grammatical mistakes make you insane.

Dedicated Reader
Literate Good Citizen
Book Snob
Non-Reader
Fad Reader
What Kind of Reader Are You?
Create Your Own Quiz

(Hat-tip: Grrrrl)

Medical Imaging of the Week

Radiology Grand Rounds-VIII are up on Sumer’s Radiology Site

Clock Quotes

Life is something that happens when you can’t get to sleep.
Fran Lebowitz (1950 – )

Basics: Biological Clock

Considering I’ve been writing textbook-like tutorials on chronobiology for quite a while now, trying always to write as simply and clearly as possible, and even wrote a Basic Concepts And Terms post, I am surprised that I never actually defined the term “biological clock” itself before, despite using it all the time.
Since the science bloggers started writing the ‘basic concepts and terms’ posts recently, I’ve been thinking about the best way to define ‘biological clock’ and it is not easy! Let me try, under the fold:

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The Cultural Politics of Sleep

Nicole Eugene recently defended her Masters Thesis called Potent Sleep: The Cultural Politics of Sleep (PDF) on a topic that I find fascinating:

Why is sleep, a moment that is physiologically full and mentally boundless, thought to be a moment of absence and powerlessness? Where did this devalued notion of sleep come from and how can we situate sleep studies within a continuation of a historical processes and economic infuences? In other words, how does sleep effect and exist within systems of power? To answer these questions I turn to a range of scholarship and theoretical studies to examine the complexities and dynamics at work within the cultural discourses on sleep. By creating a genealogy of sleep I am able to track the way notions of sleep have changed and evolved over time. I develop a theoretical framework to examine how the Enlightenment effected notions of sleep by strengthening a cultural disposition for logical, rational and phonomenological modes of knowledge. I find that the advent of modernity is signified by the moment in which sleep, darkness and unknowing become negative while being awake, light and knowledge become positive. To understand how sleep (and sleep studies) operates in contemporary situations I examine them within the economy of time in which clock time is conflated with money. Here I also visit the way sleep functions in relation to work in a neo-Taylorist management era. I offer an account of sleep’s connections to passivity within the patriarchal systems of thought. I determine that the cultural politics of sleep and sleep disorders point to a rift in the Western Self because of a presumed simultaneity of thinking, acting and being. I have engaged in a range of disciplines and use theory, historical studies, textual analysis , and autoethnography as methodologies to outline some of the major cultural discussions that surround sleep.

And she is not the only one in the world interested in cultural, social and political aspects of sleep. I wish someone would pay for me to go and liveblog the Workshop: New Directions in the Social and Cultural Study of Sleep to be held in Vienna on 7-9 June 2007:

This international and interdisciplinary workshop aims at exploring new directions in the study of sleep from the perspectives of the Humanities, Social and Cultural Sciences. The aim is to raise awareness of the social, cultural, political, and environmental influences on sleep behaviour and to describe in detail variations of sleep patterns in different countries and social groups as well as the meanings people attribute to their sleep and sleep-related behaviour.

Once I read the 191 pages of Nicole’s thesis (and I’ll have to find some time to do it), I will post my thoughts on it here, so stay tuned.
(Related)

I always like it…

.. when someone rips PETA a new one
Added later: Jill and Chris have more (and watch all those disccussions in the comment threads on all three posts!).
Added even later: Archy has a great analysis of this.

All the cool folks are doing it….

I am:

Robert A. Heinlein

Beginning with technological action stories and progressing to epics with religious overtones, this take-no-prisoners writer racked up some huge sales numbers.

Which science fiction writer are you?

Science Under Attack II – blogospheric response

There are also more responses to the U of California lawsuit described by Sara Robinson the other day.
See what Amanda and PZ Myers have to say about it.
Edit: and Mike

Science Under Attack – blogospheric response

More and more science bloggers are chiming in on the story about a nasty PR campaign against open-source publishing. See Revere, Alex, Steve, Tim and Corie for a taste and several more are linked from here. Also, read David Biello in Scientific American who wrote an article about it: Open Access to Science Under Attack
Update: Now WaPo chimes in here (thanks Alex).
Please go to discuss this on the SciAm blog.

Quotidian

The Merriam-Webster Word of the Day for January 27, 2007 is:
quotidian • \kwoh-TID-ee-un\ • adjective
1 : occurring every day
*2 : belonging to each day : everyday
3 : commonplace, ordinary
Example Sentence:
As an employee, Fiona is gifted at solving the difficult problems that arise from time to time, but she is often careless about the quotidian responsibilities of her job.
Did you know?
In Shakespeare’s play As You Like It, the character Rosalind observes that Orlando, who has been running about in the woods carving her name on trees and hanging love poems on branches, “seems to have the quotidian of love upon him.” Shakespeare’s use doesn’t make it clear that “quotidian” derives from a Latin word that means “every day.” But as odd as it may seem, Shakespeare’s use of “quotidian” is just a short semantic step away from the “daily” adjective sense. Some fevers occur intermittently — sometimes daily. The phrase “quotidian fever” and the noun “quotidian” have long been used for such recurring maladies. Poor Orlando is simply afflicted with such a “fever” of love.
*Indicates the sense illustrated in the example sentence.

Sort of like “circadian”. Perhaps one day I’ll use ‘quotidian’ in a paper instead of ‘circadian’ just to see what reviewers say…

My picks from ScienceDaily

Fish Can Determine Their Social Rank By Observation Alone, Study Finds:

A male fish can size up potential rivals, and even rank them from strongest to weakest, simply by watching how they perform in territorial fights with other males, according to a new study by Stanford University scientists. The researchers say their discovery provides the first direct evidence that fish, like people, can use logical reasoning to figure out their place in the pecking order.

Genetic Evaluations Help Breed Better Bossies:

Breeding dairy cattle is an inexact science, so many gene-linked traits must be considered. Some of the major ones are quantity of milk produced, its fat and protein content, mothers’ pregnancy rates, calving ease and, most recently, stillbirth rate. Such evaluating of genetic traits has allowed dairy farmers to increase milk production to all-time highs.

Living Near A Highway Affects Lung Development In Children, Study Shows:

Children who live near a major highway are not only more likely to develop asthma or other respiratory diseases, but their lung development may also be stunted. According to a study that will appear in the February 17 issue of The Lancet and now available online, researchers at the Keck School of Medicine of the University of Southern California (USC) found that children who lived within 500 meters of a freeway, or approximately a third of a mile, since age 10 had substantial deficits in lung function by the age of 18 years, compared to children living at least 1500 meters, or approximately one mile, away.

Clock Quotes

There is never enough time, unless you’re serving it.
Malcolm Forbes (1919 – 1990)

We agree again

After a very pleasant dinner on Saturday where we discovered we agree on pretty much everything (e.g., religion, evolution, etc.), I am pleased that Larry Moran and I also agree on yet another thing.

What Is It Like to Be a Bat?


I am not surprised at all.
Read more on Splintered Mind and Cognitive Daily (check the comments on both)

This aired too early in the day for my adolescent brain…

I was too busy with the conference so I missed the NPR Morning Edition story on one of my favourite subjects: Adolescent Sleep, which was followed by two more stories on the same subject! I am glad to see this topic becoming this prominent.
Hat-tip: Mind Hacks