Yearly Archives: 2007

Oekologie #5

The latest edition of Oekologie is a real feast – a chockfull of great posts wrapped around the snippets of ancient and medieaval Arabic science for the history buffs, courtesy of Jeremy Bruno. Enjoy!

Green Rounds

Grand Rounds (Vol 3, No. 34) are up on Medical Humanities Blog
Carnival of the Green #77 is up on Natural Collection

My Picks From ScienceDaily

Sleepless For Science: Flies Show Link Between Sleep And Immune System:

Go a few nights without enough sleep and you’re more likely to get sick, but scientists have no real explanation for how sleep is related to the immune system. Now, researchers at the Stanford University School of Medicine are finding that fruit flies can point to the answers.

Professor Creates ‘Reverse Alarm Clock’ That Keeps Young Children Sleeping:

John Zimmerman, an associate professor in Carnegie Mellon University’s School of Design and Human-Computer Interaction Institute, has developed an unconventional alarm clock every new parent needs — a clock to keep their children sleeping. Called the Reverse Alarm Clock, the product aims to keep young children from interrupting their parents’ sleep.

Continue reading

The Encyclopedia of Life

Everybody is talking about Encyclopedia of Life these days. It is alll still very Beta – we’ll wait and see how it turns out in the end. Many are enthusiastic, some are skeptical. But, what happened to the Tree of Life? Remember it from 1995 and after? I found it useful during the last decade for teaching and finding info. Why build a whole new thing when the old one could be updated and modernized instead – it is already chockful of information.

ClockQuotes

A sage thing is timely silence, and better than any speech.
– Plutarch

Carnivalia

Panta Rei #5 – Chemical Sciences – is up on Nonoscience. Next edition is a Life Sciences special, planned for May 28, 2007 also at Nonoscience.
Carnival of the Godless #66 is up on The Atheist Experience.
Oekologie #5 – last call for submissions for tomorrow’s edition on The Voltage Gate.
The next Carnival of the Liberals will be hosted by me on May 23rd.
The International Carnival of Pozitivities (HIV/AIDS) is now accepting submissions for its 12th edition to be published in June, 2007. on HIV Health and Support Network Community News

The Inter-Ghost Connection

The other day I was chatting with my brother (the smarter brother of Sherlock Holmes) on the phone, and he said something that may have some truth to it – I was predisposed, from early childhood, to understand and like the Web and the blogs. How? By reading and re-reading a million times the books about the adventures of The Three Investigators. Actually, only four of the early books in the series were tranlated into Serbo-Croatian, but I read them over and over. Later, here in the USA, I managed to find and read a few more in English.
What does that have to do with blogging? Well, back in the 1960s when the adventures were going on, there were no computers and the Internet. Yet, the three intrepid boys had to use their smarts and every contraption they could build from readily available materials, to solve mysteries and catch criminals. Usually, there would be something apparently supernatural happening and Jupiter Jones, Pete Cranshaw and Bob Andrews would figure out the completely natural explanation for it – usually some smokscreen built by the villain in order to cover his tracks (Mary V. Carey, one of the author of later volumes, broke this essential rule and left some supernatural stuff as such at the great consternation of readers who were all budding skeptics).
One of the inventions they came up with was the Ghost-to-Ghost Hookup:

Developed by Jupe in “Stuttering Parrot,” the Ghost to Ghost hookup was designed to get a lot of kids looking for something or someone at once without each person having to be personally contacted by the Three Investigators. Jupe, Pete, and Bob would each phone five friends and ask for the requested information. If none of those fifteen boys could help, then they would pass the message along to five each of their friends. The sheer numbers involved made it possible to mobilize the kids of Rocky Beach in a short time to be on the lookout for whatever person or object the boys were hunting. Jupe named it “Ghost to Ghost” because they would most likely not know who would be calling with information, and the voices on the phone would appear like “ghosts” to the boys, plus the name has flavor and color. The down side to the hookup was that all the phones in Rocky Beach would have busy signals while the messages were being passed along. The Ghost to Ghost Hookup helps out in several cases, including “Stuttering Parrot,” “Whispering Mummy,” “Crooked Cat,” “Shrinking House,” and others.

Or, from here:

Perhaps you remember the moment in The Mystery of the Stuttering Parrot when Bob and Jupiter, together, invent the Ghost-To-Ghost hookup? As Jupiter points out, the scheme could be used for contacting people “all the way from here to the Atlantic Ocean, if necessary. That would make it a Coast-To-Coast Hookup. But such a phrase has been used in the past by the television and radio networks. I prefer to be distinctive. So we will call ours a Ghost-To-Ghost Hookup.” In the Ghost-To-Ghost Hook-up, each of the Three Investigators calls five friends and asks each of the friends to call five more friends, and asks those in turn to call five more, and so on, until as Jupiter puts it, “we get results.”

You can find more about the books (and the movie coming out in a few months – I am excited!) here, here and here.
First, let me say that the ‘Ghost-to-Ghost Hookup’ was translated into Serbo-Croatian as “medjuduhovski spoj” whcih then translates back into English as “Interghost Connection”, a term I prefer to the original.
And, that is what we want whenever we post something online. If I want to get some informaiton out, or ask a question, I do not call five friends, but write a blog post. The post will be seen by about 1500 people on the first day, then cumulatively by as many or more over the subseuqne days and weeks. If the information is deemed important or interesting by the readers, they can take any kind of action. Know the answer? Post it in a comment or send me an e-mail. If not, you can print out the post and show the hardcopy version to your computer-shy friends. You can click on the “e-mail this article” button and send it to your friends. Or, you can click on one of the buttons on the bottom and send the information to places like Digg, Reddit, Slashdot or Stumbelupon. You can place a link to it in the Notes on your facebook profile or MySpace. You can post the information and the link on your own blog. Unlike telephones – the lines are never busy. Unlike telephones, there is no game of broken telephones: copy+paste coupled with the link to the original post makes the spread of information in high fidelity. So, instead of covering the small town of Rocky Beach in a few hours, I can, theoretically, cover half of the world in a few minutes, especially if he informaiton is really important.
So, once I saw my first blog, I subconsciously realized that this is the superior and modern version of the Interghost Connection. Remembering its effectiveness from the old books, of course I was immeditaelly drawn to use this way of communication for my own nefarious purposes. And I am still doing it, apparently….

Digital data preservation, sharing, and discovery: Challenges for Small Science Communities in the Digital Era

From Paul I learned about the DRIADE Workshop on Digital data preservation, sharing, and discovery: Challenges for Small Science Communities in the Digital Era, organized by NESCent (National Evolutionary Synthesis Center) and the UNC Metadata Research Center. I am not sure if the participation is by invitation only, or if it is free, but I’ll try to sneak in somehow. We’ll see if that works and will let you know if it does.

My Picks From ScienceDaily

Rare Sighting Of Threatened Bottlenose Dolphins In English Channel:

On a crossing of the English Channel aboard the P&O Cruise Ferry, the Pride of Bilbao on the 5th of May, a large group of approximately 30 Bottlenose Dolphin was sighted by Clive Martin, Director for the wildlife charity Marinelife and senior Wildlife Officer for the Biscay Dolphin Research Programme.

DNA Reveals Hooded Seals Have Wanderlust:

Researchers have discovered a new fact about hooded seals, a mysterious 200 to 400 kilogram mammal that spends all but a few days each year in the ocean.

Simpler Way To Counter Global Warming Explained: Lock Up Carbon In Soil And Use Bioenergy Exhaust Gases For Energy:

Writing in the journal Nature, a Cornell biogeochemist describes an economical and efficient way to help offset global warming: Pull carbon dioxide out of the atmosphere by charring, or partially burning, trees, grasses or crop residues without the use of oxygen.

Back from the ER

Yup, it happened again. My left shoulder popped out of the socket, right around 12:30 after midnight. I used to be able to put it straight back. My wife did it a couple of times before – she’s a nurse after all. It first happened at a horse show when I was abotu 18 or so and had it fixed on the spot by a sports medicine doc. I had it put back by friends, passers-by, medical students, veterinarians, but as the time passes it gets more and more difficult to put back. This is the second time in a row (last time was about 5 years ago) that I had to go to ER, be put to sleep and wake up with the arm in place. It usually hurts like hell for a few days afterwards, so i got some pain medicine.
I am supposed to teach tonight and meet some people over the next couple of days – I hope I am able to do so.

The importance of being an expert on …something, anything!

Today’s Obligatory Reading of the Day is this essay by Kagro X:

Have you ever read, seen, or heard a mainstream media account of some event in which you’ve been personally involved? Or in which you have developed, under whatever circumstances, some sort of expertise? Ninety-nine times out of hundred, people with that sort of personal or specialized knowledge of the events covered will come away with some sort of substantial complaint about the quality of the coverage…
——-snip———–
Why, though, should the general audience settle for “sufficient?” Or perhaps more to the point, why should audience members with specific knowledge of the nuances, shortcomings, omissions, etc. have to settle for it, or keep it to themselves? As I said above, the Internet and the blogosphere now make it impossible to predict with certainty where true expertise lies….

Read the whole thing….

ClockQuotes

There are no insoluble problems. Only time-consuming ones.
– James A. Michener

Ha!

3291_Marija_Serifovic.jpgAfter all those years that I actually cared about this, now that I don’t any more Serbia finally won the Eurovision contest!

Direct Spanish ancestry of the Shackleford wild horses

Shackleford ponies are often in the media around here. Some love them, some hate them, some want to preserve them, some to exterminate them, and it is not easy to get all the surplus horses adopted each year. Perhaps the new findings of their Spanish origin (DNA will tell the tale of wild horses) will tilt the scales towards their preservation, especially on the island of Corolla.
Thanks to Bill for the heads-up.

Blogrolling for Today

PLoS blog

Blue Cat Blog

Yan Feng

Dangerous Intersection

PhDiva

1420Mhz

RichardDawkins.net Forums

George’s Blog

Alone on a Limb

Nobel Intent

Learning in the Great Outdoors!

The first and the second editions of the new Learning in the Great Outdoors carnival are already up on Alone On A Limb. It’s time to set up the homepage with archives, instructions for submissions and hosting, etc.

My Picks From ScienceDaily

Venomous Brown Widow Spiders Making Themselves Known In Louisiana:

A dangerous spider is making itself known to Louisiana residents. The brown widow spider is becoming more common, according to entomologists with the LSU AgCenter.

Bat Flight Generates Complex Aerodynamic Tracks:

Bats generate a measurably distinct aerodynamic footprint to achieve lift and maneuverability, quite unlike birds and contrary to many of the assumptions that aerodynamicists have used to model animal flight, according to University of Southern California aerospace engineer Geoffrey Spedding.

Continue reading

ClockQuotes

Time is the scarcest resource and unless it is managed nothing else can be managed.
– Peter F. Drucker

Updates…

First, I’d like to thank Archy, Rev. BigDumbChimp, Melissa and PZ for the birthday wishes.
Also, a couple of my blog readers (who, I assume, wish to remain anonymous), hit my amazon wish list and bought me birthday presents which arrived with perfect timing – today. I am very happy I got this, this and this. Thank you so much!
I had a wonderful day today. After sleeping late, we went up to the Village green in Southern Village, feasted on the recently revamped menu of the Town Hall Grill, got coffee and gelato (as well as my favourite newspaper) at La Vita Dolce (which has really improved with the recent change of ownership), then walked up to Weaver Street Market and bought (and imbibed) some Eye of the Hawk. Finally we went home and had birthday cake, made at Southern Season (chocolate, chocolate, chocolate – just the way I like it). I talked to a lot of people on the phone. Tomorrow, I may go and visit my old friends at the horse show at Triton Stables if I manage to wake up early enough. Oh, and don’t tell anyone who knows me, but I have a cell phone now. I’ll try to learn how to use it tomorrow.
In other news, another great local blogger is leaving the area – Josh Steiger has left IBM and is going to the Bay Area to work for Google next week.
My ears are still a little iffy from the four flights (especially the last one). My NC colleagues may be appalled, but during the wait at the Dallas airport I tried Texas-style BBQ and I have to admit I liked it. That does not mean I don’t like NC-style BBQ (both eastern and western version, tomato vs. vinegar) – it is just a completely different food-group. One can easily like both.
Now, for the people at PLoS who may be reading this, a little help, making it easier for you to find stuff – here are some of the posts we discussed on Thursday:
On the globalization of science this, this, this, this and this.
On the duck paper.
On the 2007 anthology and conference and the 2008 anthology and conference.
On my use of a blog in teaching, reviewing a paper and getting personal.
My old thoughts about science blogging (and some even older thoughts…) , my attempt to find all science blogs and about blog carnivals (and again) and how some carnivals are moving towards peer-review (and a response by Pedro Beltrao).
On re-writing papers on blogs after some time has passed: this, this, this, this, this and this.

On this day in history, part 2 (or is it 3?)

Happy birthday to Melissa McEwen aka Shakespeare’s Sister, a great blogger and friend!

Today’s carnivals

The 60th Skeptic’s Circle is up on Infophilia.
The Carnival of Space #2 is up on Why Homeschool.
Friday Ark #138 is up on The Modulator

On this day in history

Oh, no, you are thinking that I was going to write yet another post about my own birthday. Fear not. This is a different kind of voyage that started on this day. On May 11th, 1820, that curiously important litttle ship, HMS ‘Beagle’, was first launched (via Beagle Project blog)

Back from SF

Sorry for the delay – I was exhausted and slept almost 10 hours straight ina deep coma once I got home….
Thank you all for birthday wishes both here, by e-mail and on Facebook.
I think I lost my fear of flying this week. Perhaps it was some magic in the little yellow pills that my wife gave me to take 30 minutes before take-off- but could the effect really last for 7-8 hours over two flights in each direction? Perhaps it was the nice, clear weather and prefectly executed flights. Perhaps it was my excitement about the trip itself. Perhaps it was cool people I sat with: a Siemens guy (who is telecommuting, i.e., he is the Raleigh office for the company) who was reading the latest Bob Woodward book and we talked about Tesla and Edison, about physicis and about science and math education; or the IBM guy who designs educational and classroom software which I am ineterested in; or the National High School Rodeo Barrel-Racing Champion who was coming back home to Napa from her Texas college with a great rodeo program, just to pick up her family and horses and go competing to Wyoming, Montana and rest of the West for the summer.
The last leg of the journey home was delayed by about an hour so I joined the mile-high club….no, not in that way! I celebrated my birthday up in mid-air and got my birthday coffee from the nice stewardesses exactly at midnight!
I am sorry I did not get to see more of San Francisco, but I saw a little bit, galivanting around town with Janet (and you can see a picture she posted from the evening. We went to a cool asian restaurant where I had a duck curry soup spread over a bed of rice that was delicious. Then we went to a bar wher I had Guinness. And we had great fun talking about science, blogging, open science, children and everything else.
I stayed in The Mosser, a hotel built in 1913 – it was the first thing built in that part of town! Although it was obviosuly renovated and looking perfectly clean and fresh, one could easily shoot a period movie there – everything in it, including the insides of the rooms, looks like something from the early 20th century. Very romantic. And teh bed was so comfortable I slept like a baby!
In the morning I took a walk to to PLoS where I was sure to meet some gentle people there (though I forgot to put a flower in my hair). Frankly, it did not feel like a job interview! I was relaxed and it was just so much fun to talk to all the people who are excited about open science and the role they play in making it happen. They have great ideas (which I am not at liberty to divulge) and they seemed to like my ideas. It is not like interviewing for a company that wants to sell a product, it is interviewing for an organization with a mission to change the world (or at least one aspect of it) and that is exactly my own personal mission as well. No doubts, no second thoughts about this at all…. Of course, I’ll let you know when the final verdict is in.

41

Two years ago today, I posted this. One year ago today, I only linked to it, though I should have reposted it instead to start a tradition. Well, I’ll fix that this year on this day – under the fold:

Continue reading

ClockQuotes

Our birthdays are feathers in the broad wing of time.
– Jean Paul Richter

ClockQuotes

A single day is enough to make us a little larger or, another time, a little smaller.
– Paul Klee

Off to SF

Leaving RDU at noon, arriving in SF in the afternoon. If Janet remembers to bring her camera to dinner tonight, she’ll post them on her blog so check it out later tonight or tomorrow. If she brings her laptop, I’ll check my e-mail and comments (and of course my Sitemeter!) briefly – if not, I’ll be back online on Friday. I have scheduled just a couple of little things to show up here automatically while I was gone….and you can always read the long post from earlier this morning.
I forgot, while there was still enough time, to pick up Professor Steve Steve, so he is not coming with me. He’s been everywhere, but I doubt he’s seen the offices of PLoS yet, especially not on a Thursday! Hopefully, there will be another opportunity soon.

My Picks From ScienceDaily (Neuro edition)

Lots of interesting Neuro/Behavioral stuff came out lately, some really cool, some questionable…so you let me know what you think:
Brain’s White Matter: More ‘Talkative’ Than Once Thought:

Johns Hopkins scientists have discovered to their surprise that nerves in the mammalian brain’s white matter do more than just ferry information between different brain regions, but in fact process information the way gray matter cells do. The discovery in mouse cells, outlined in the March issue of Nature Neuroscience, shows that brain cells “talk” with each other in more ways than previously thought. “We were surprised to see these nerve axons talking to other cells in the white matter,” says Dwight Bergles, Ph.D., an associate professor of neuroscience at Hopkins.

Traumas Like Sept. 11 Make Brains More Reactive To Fear:

According to a new brain study, even people who seemed resilient but were close to the World Trade Center when the twin towers toppled on Sept. 11, 2001, have brains that are more reactive to emotional stimuli than those who were more than 200 miles away.

Newborn Neurons Like To Hang With The ‘In’ Crowd:

Like any new kid on the block that tries to fit in, newborn brain cells need to find their place within the existing network of neurons. The newcomers jump right into the fray and preferentially reach out to mature brain cells that are already well connected within the established circuitry, report scientists at the Salk Institute for Biological Studies in the online edition of Nature Neuroscience.

Continue reading

Today’s carnivals

Tangled Bank #79 is up on Epigenetics News
Four Stone Hearth #4 is up on Anthropology 2.0
118th edition of the Carnival of Education is up on NYC Educator
38th Carnival of the Liberals is up on That is so queer….
The latest Carnival of Homeschooling is up on Homeschoolblogger

ClockQuotes

Journalist: a person without any ideas but with an ability to express them; a writer whose skill is improved by a deadline: the more time he has, the worse he writes.
– Karl Kraus

The Work-Place, or, Catching a Catfish Online

I will be offline for a couple of days so I will not be able to post at my usual frantic pace. Instead, I decided to write something that will take you a couple of days to read through: a very long, meandering post, full of personal anecdotes. But there is a common theme throughout and I hope you see where I’m going with it and what conclusions I want you to draw from it.
Pigeons, crows, rats and cockroaches
I was born and grew up in a big, dirty city and I am not going back (my ex-Yugoslav readers have probably already recognized the reference to the good old song Back to the Big, Dirty City by my namesake Bora Djordjevic of the uber-popular Fish Soup band). I spent the first 25 years of my life in Belgrade, population 2 million. No, I did not feel uncomfortable there. I knew every nook and cranny of the city. I walked around town most of the time, even if that meant two hours at a brisk pace in the middle of the night from the northernmost part of Zemun all the way home south of center.
And I still think that it is a great city – a wild mosaic of architecture from Roman and Ottoman times, through the Austro-Hungarian time, the pre-WWII Serbian and early Yugoslav kingdom era and the Tito communist period, to the Milosevic decade and Wes Clark’s enriched uranium. Steeped in history, yet not trying to live in it. Some cities try to keep looking the same the way they did a century or two ago when they were at the hight of their influence. Stratford-upon-Avon keeps trying to look as if Shakespeare is still living there. Not Belgrade. Far too confident in its 11 centuries of history to care about anything but youth and future. It can be dizzying walking around – there may be an old mosque from the times of Turkish occupation embedded into the remains of the Roman fortress, looking down the street of houses built in Austro-Hungarian style in one direction, in soc-realist style in another direction and overlooked by a huge green-glass modern hotel. There is great art and the ugliest kitch standing side-by-side, European hyper-intellectuals walking side-by-side with peasants, bookstores sinking under the weight of philosophy books and Gypsies collecting scrap metal – and all equally poor.
But it hurts one’s throat to arrive in Belgrade (at least it did in 1995, the last time I went to visit, when my father was still alive). Clean air is not the first priority when the retirees are waiting for months to get their pensions. That is why I escaped whenever I could – summers in our small weekend house at the base of the Mt.Avala just about 20 minutes south of Belgrade when I was a little kid, a couple of weeks at the Adriatic coast every summer when I was little before that became too expensive, teenage years spent on the Danube river in Eastern Serbia in the village my father grew up in, and many years, day after day, at the Belgrade racecourse and the surrounding woods.
~.~.~.~.~.~
Back in 1989 or so, the rats at the racecourse got really numerous and big. Ten-pounders, some of them, I bet. They were not afraid to walk around in the middle of the day. They chased, caught, killed and ate our barn cats. Our terriers were afraid to approach the feed-rooms. We forbade the kids from going to get horse feed. Even we adults banged on the doors before going in. But gradually, we moved all the grain into bins and barrells, plugged all holes, reinforced the walls, and kept the floors as clean as possible. There was just not enough food around any more to sustain such a huge population. As it always goes, after a boom, there is a bust. The rat population collapsed and dissappeared as suddenly as it initially appeared.
~.~.~.~.~.~
I grew up in a small appartment on the 7th floor. My school (K-12) was a walking distance from home. I took a bus to school anyway, being an owl and a late riser, but I had plenty of time to walk home after classes and stop by various food establishments, or parks, or the Natural History Museum, or the library, or stealing cherries and appricots from trees along the route…

Continue reading

Conception Date Affects Baby’s Future Academic Achievement (!?)

It could be the seasonal use of pesticides, as this study suggests, or it could be seasonality in nutrition of mothers and infants, or seasonality of environmental stressors, or seasonality of mothers’ hormone profiles. Most likely all or most of these and other factors play a role, and the relative importance of the factors differs between geographic regions, between socioeconomic strata, and between times in history.
But there is one factor that has been repeatedly demonstrated to play no role at all: the position of planets, moons and stars, as seen from Earth, at the moment of birth of a baby….

Another job ad

If you are idle, retired or rich, if you live in (or are willing to move to) Oakland, California, if you have decent computer skills and if you want to help fight against Creationism, then this job is perfect for you:
From the National Center for Science Education:

Information technology technician needed by the National Center for Science Education, a nonprofit organization that defends the teaching of evolution in the public schools, to maintain and expand NCSE’s web presence, including maintenance of hardware platforms, determining software needs, and overseeing migration of content to a new web site. NCSE is pursuing open source solutions to information technology services.

Mammoths, many mammoths….

An Ancient Bathtub Ring Of Mammoth Fossils:

Pacific Northwest National Laboratory geologists have put out a call for teeth tusks, femurs and any and all other parts of extinct mammoths left by massive Ice Age floods in southeastern Washington.
The fossils, in some cases whole skeletons of Mammathus columbi, the Columbian mammoth, were deposited in the hillsides of what are now the Yakima, Columbia and Walla Walla valleys in southeastern Washington, where the elephantine corpses came to rest as water receded from the temporary but repeatedly formed ancient Lake Lewis. PNNL geologists are plotting the deposits to reconstruct the high-water marks of many of the floods, the last of which occurred as recently as 12,000 to 15,000 years ago.
“Now is the perfect time to collect geologic and paleontologic data,” said George Last, a senior research scientist at the Department of Energy laboratory in Richland, Wash., whose sideline is researching the ice-age floods. “Winter has eroded the slopes, exposing new evidence. We’re interested in researching any known or suspected mammoth find, to collected additional evidence and to improve documentation of those sites.”

Well, Archy is in that neck of the woods and mammoths are his Big Blogging Topic, so I hope he’ll write something about this soon.

Grand Green Garden

Mendel’s Garden #14 is up on Epigenetics News
Grand Rounds, Volume 3, No 33 are up on The Blog That Ate Manhattan
Carnival of the Green #76 is up on Eco-Worrier

NeuroBlogging of the Week

Encephalon #22 is up on John Hawks Anthropology blog

How to teach as much biology in as little time

Yup, I am teaching my accelerated BIO101 class tonight again. It is all about figuring out what is really important, stripping away everything else, trying not to fry the students’ brains, and keeping one’s own sanity in the process. I’ll probably spend about 30 minutes on cell division and DNA replication, about 45 minutes on development, about 30 minutes on genotype and phenotype and about an hour on evolution, taking breaks between each two topics. In the end, if there is time, I may show an old movie. How old? Well, Steve Jones is in it and he looks young and he talks about his – then current – snail research! That old.

Framing Science – a new page

Chris and Matt just announced their tour as well as a scienceblogs.com page dedicated solely to Speaking Science 2.0. You can check out the original blogospheric responses here (there have been only a few comments since I quit updating that post – most of the debate was highjacked by the interesting, but unrelated, discussion of the fight between religion and reason).

A Pacemaker is a Network

Blogging on Peer-Reviewed Research

This is going to be a challenging post to write for several reasons. How do I explain that a paper that does not show too much new stuff is actually a seminal paper? How do I condense a 12-page Cell paper describing a gazillion experiments without spending too much time on details of each experiment (as much as I’d love to do exactly that)? How do I review it calmly and critically without gushing all over it and waxing poetically about its authors? How do I put it in proper theoretical and historical perspective without unnecessarily insulting someone? I’ll give it a try and we’ll see how it turns out (if you follow me under the fold).
Clock Genes – a brief history of discovery
Late 1990s were a period of amazing activity and rate of discovery in chronobiology, specifically in molecular basis of circadian rhythms. Sure, a few mutations resulting in period changes or arrhythmicity were known before, notably period in fruitflies, frequency in the fungus Neurospora crassa, the tau mutation in hamsters and some unidentified mutations in a couple of Protista.
But in 1995, as the molecular techniques came of age, flood-gates opened and new clock genes were discovered almost every week (or so it appeared).

Continue reading

Blogrolling for Today

Thought Capital

Neurozone

The Situationist

Library of Congress Blog

Madam Fathom

The Dispersal Of Darwin

Plant Physiological Ecology

On The Brain

Cat Cubed

Mike has a great idea

Three out of ten Republican presidential candidates raised hands in the recent debate indicating they do not believe in evolution. Jason has an excellent round-up of responses (Arianna Huffington rocks!) with some good comments by readers as well. How can you help combat scientific ignorance? If your blog is NOT a science blog, try to do what Mike suggests and link to five science-related posts every week.
There is plenty of stuff here at scienceblogs.com, but you can also use this page when you are looking for science posts, especially the science-related carnivals listed at the very bottom of that page. Carnivals act as filters, showcasing the best that science/nature/medical/environmental blogosphere has to offer on any given week.

Gene Genie

Gene Genie, the carnival of human genetics, now has a homepage and the Sixth issue is now up on ScienceRoll

This is someone you WANT to hire!

Tatjana Jovanovic is a fellow escapee from Serbia and a fellow biologist. She got her MS in Biology at the University of Belgrade and has collected enough data before emigrating to be able to immediately get a PhD if someone would sponsor her here. She is currently in Arizona, but she is moving to North Carolina later this year. She will send you her impressive CV on demand – her publications range from immunology to pest control, but most of it is focused on small rodents, their avian predators and the dynamics of predator-prey relationships. She has combined lab and field work, from biochemistry through mathematical modelling to field experiements, in most of her papers and has made discoveries of small mammals not previously known to reside in that part of the world.
Tatjana particularly likes owls (a subject of several of her papers), she has performed the Serbian portion of the research for the Global Owl Project and is active on The Owl Pages.
She is also an artist and has acted as a mentor for several high-school and undergraduate theses in biology (yes, we do simple research and write theses on topics related to our majors in high school in Serbia). Science education is one of her strengths and passions. Environmental protection is another.
If you are in North Carolina and have a place for a hard-working, honest, smart, highly-educated and well-rounded person in your lab, school, organization or company, contact Tanja at: tanjasova AT gmail DOT com

Panta Rei

Panta Rei is back with a new concept. Send your entries and apply to host.

ClockQuotes

“The time has come,” the Walrus said,
“To talk of many things:
Of shoes – and ships – and sealing-wax –
Of cabbages – and kings –
And why the sea is boiling hot –
And whether pigs have wings.”

– Lewis Carroll

Another review of the SBC-NC’07

I know it’s almost halfway between the first and second Science Blogging Conference, but reviews of the first one are still coming out. Check out the latest one, written by Eva Amsen and published by ‘Hypothesis’ yesterday.

Give the spherical cow an orgasm!

Good luck

That’s one mighty fast horse!

Street Sense won the Derby in style. He hung back in 19th place (out of 20 horses) for most of the race. About 3/4 miles before the end, jockey Borel switched to a new gear and stepped on the gas. He passed all but the last two horses by riding on the rail – all the other horses (and it was horses, not jockeys) just moved away from him as he passed them one by one. That was so fast, all the other horses looked like Clydesdales in comparison. Not wanting to gamble any more, Borel decided to pass the last two on the outside and won so easily he started celebrating a hundred yards before the finish line! Awesome race!

Web, politics and everything else….

Writing actual science posts takes a lot of time, research, thinking and energy. I assembled a large pile of papers I want to comment on and I actually started writing posts about a couple of them already, but Real Life interferes…and it is so much easier and quicker to post a short opinion-post or a linkfest.
Also, my mind has lately been mostly focused on Science Blogging, more Science Blogging, Open Science, Open Notebook Science, organizing the next Science Blogging Conference, Framing Science, Teaching Science and similar stuff I’ve been reading about a lot lately due to the excitement about the potential job. I’ll be in San Francisco interviewing on Wednesday and Thursday and I’ll try to write and schedule a couple of straight-up science posts to appear here while I’m gone.
I always blogged in phases, i.e., my interests shift week after week, so I just realized that it’s been a very long time since I last wrote anything about electoral politics or wrote a pitch for John Edwards. Perhaps I’ll do that again next week, but here is something brief about the way current campaigns are using (or not) the power of the Internet wisely. There is a tension in all campaigns between the dinosaur campaign managers who grew up in the age of flyers and thought TV ads were the next best thing and the new generation of Web-savvy folks who actually do grok the power of the Web.
As Andrew Rasiej says in Jose Antonio Vargas’ excellent article in WaPo (via, via):

“But you have to look at where the power lies. How much influence do their online people have? Not much right now. Fact is, most campaigns, on both sides of the political aisle, think that the Internet is just a slice of the pie. They don’t realize it’s actually the pan.”

Or, as Ed Cone summarizes:

Traditional media remain powerful and relevant, and it’s easy for those of us who live online to forget that a lot of Americans aren’t (yet) right there with us. But as the 2008 campaign gets serious, it looks like the net still isn’t getting the respect it deserves from some of the folks in charge.

I’ve argued before (and I am far from being the only one) that the Edwards campaign gets the Internet better than any other campaign, or at least that their star-studded online team pulls more weight inside his campaign than their equivalents working for other candidates of both parties. Recent hiring of Joe Trippi adds to that impression. Here is the most recent example of their embrace of Web 2.0 in a smart combination with the rusty, old media:

Continue reading

ClockQuotes

If you don’t have the time to read, you don’t have the time or the tools to write.
– Stephen King