Category Archives: Science Practice

Science and Congress

The Science Communication Consortium presents:

Science and Congress: The Role of Think Tanks and Congressional Science Committees
Thursday, April 24, 2008
7:00-8:30pm
CUNY – 365 Fifth Avenue, NY NY (directions below)
Recent years have seen a rise in prominence of legislative issues that control how scientists work or that require scientific information for decision making. How do legislators receive this information, and what are the potential effects of distortion or misunderstanding of it on science in the United States? Join us for a discussion on how science-related think tanks and congressional science committees are involved in this process.
Panelists:
Joanne Carney, Director of the American Association for the Advancement of Scientists (AAAS) Center for Science, Technology and Congress
David Goldston, former chief of staff for the House Committee on Science and author of Nature’s “Party of One” column on Congress and science policy
Michael Stebbins, Director of the Biology Policy for the Federation of American Scientists and author of ‘Sex, Drugs & DNA’
Wine and cheese reception to follow.
Registration will open soon at NYAS.org, and will be limited to the first 70 attendees. Please check the Science Alliance portal (http://www.nyas.org/sa/) soon for more details.
Location:
Martin E. Segal Theatre
CUNY – City University of New York
365 Fifth Avenue
New York, NY

NIH getting serious about brain doping

There have recently been several articles in the media about brain enhancers, so-called Nootropics, or “smart drugs”. They have been abused by college students for many years now, but they are now seeping into other places where long periods of intense mental focus are required, including the scientific research labs. Here is a recent article in New York Times:

So far no one is demanding that asterisks be attached to Nobels, Pulitzers or Lasker awards. Government agents have not been raiding anthropology departments, riffling book bags, testing professors’ urine. And if there are illicit trainers on campuses, shady tutors with wraparound sunglasses and ties to basement labs in Italy, no one has exposed them.
Yet an era of doping may be looming in academia, and it has ignited a debate about policy and ethics that in some ways echoes the national controversy over performance enhancement accusations against elite athletes like Barry Bonds and Roger Clemens.

And here is a recent article in the Baltimore Sun:

Despite the potential side effects, academics, classical musicians, corporate executives, students and even professional poker players have embraced the drugs to clarify their minds, improve their concentration or control their emotions.

It is apparently used in business:

I’ve long thought that the use of performance enhancing drugs, typically associated with professional sports, would spread to other endeavors as science progresses. Arguably, many professionals already use chemicals to improve their performance. Constant nicotione and caffeine consumption has been endemic in the business world for a long time, and more recently prescription drugs such as Adderall have been used and abused by white collar professionals to improve focus and concentration. Chemical-assisted performance is by no means a panacea. It carries with it a host of medical and ethical questions. Yet as we gain deeper insight into the way the human brain works, we’ll inevitable be confronted with new opportunities and dilemmas such as these.

Nature also recently had a discussion on the use of brain enhancers by the academics:

Barbara Sahakian and Sharon Morein-Zamir from the Department of Psychiatry at Cambridge University argue that the increased usage of brain-boosting drugs by ill and healthy individuals raises ethical questions that cannot be ignored. An informal questionnaire Sahakian and Morein-Zamir sent to some of their scientific colleagues in the US and UK revealed fairly casual use by academics, and we now want to hear your views on the topic..

The problem is getting serious enough that an international organization has recently been founded, the World Anti-Brain Doping Authority:

The agency works to help individual academic federations implement testing procedures in the fields of academic research. It also produces a list of prohibited substances that academics are not allowed to take and maintains the World Anti Brain-Doping Code.

This is pretty scary stuff. On one hand, these drugs have not been tested very well, so nobody knows what nasty side-effects they mat have with repeated and prolonged use, so this is certainly a worry. But I thought that it was a little bit too much, or at least premature, that the NIH is jumping in on this bandwaggon, with, IMHO, quite drastic proposed measures:

The National Institutes of Health (NIH) today announced three new initiatives to fight the use of brain enhancing drugs by scientists. The new initiatives are (1) the creation of the NIH Anti-Brain Doping Advisory Group (NABDAG), a new trans-NIH committee, (2) a collaboration with the World Anti-Doping Authority (WADA) and the European Commission to create the World Anti-Brain Doping Authority (WABDA) and (3) the adoption by the NIH of the World Anti-Brain Doping Code – a set of regulations on the use of brain enhancing drugs among scientists.
“These new initiatives are designed to level the playing field among scientist in terms of intellectual activities,” said NIH Director Elias A. Zerhouni, M.D. “These three activities are designed to get NIH ahead of the curve in terms of performance enhancing drug use among scientists.”
NABDAG will serve to coordinate activities across different NIH agencies in terms of regulating the use of brain enhancing drugs. The trans-NIH group will be directed by internationally renowned doping authority Jonathan Davis, Ph.D., current director of research at WADA.
“The priority of NABDAG will be to seek out input from the scientific community and from within NIH,” Davis said. “The availability of tremendous expertise and the remarkable infrastructure at NIH will make our activities more robust and will allow us to tackle questions about brain doping that were not possible to address in the past. For example, new testing procedures will need to be developed and we will be able to bring the entire NIH infrastructure to this task.”
While “doping” is now accepted as a problem among athletes, it is less widely known that so-celled “brain doping” has been affecting the competitive balance in scientific research as well. It is for this reason that NIH is collaborating with the World Anti-Doping Authority (WADA), which has led the fight against doping in athletics, to create the World Anti Brain Doping Authority (WABDA). “Because brain doping is not just an American problem,” said Richard Pound, the current Director of WADA and acting Director of WABDA until a permanent head can be found, “we are working with the European Union’s research funding agency, the European Commission Research, to make sure WABDA is effective.
NABDAG will be established within the NIH Office of Intramural Research and administered by the National Institute of Mental Health (NIMH). Additional support for the center will come from the NIH Office of the Director, the National Institute on Drug Abuse (NIDA) and the Center for Scientific Review (CSR). The research activities of NABDAG will take place on the NIH Bethesda campus. An additional focus of NABDAG will be to provide training opportunities for students and established scientists from developing countries and from minority groups in the United States.
Together with WABDA, NABDAG will work to develop the international rules for the use of performance enhancing drugs among scientists as well as testing and punishment procedures. Most importantly they will administer the World Anti Brain-Doping Code, a set of uniform anti-brain doping rules. The NIH and European Commission have formally adopted this Code for the conduct of all scientists which receive funding in any form (intramural or extramural) from these agencies. The Code includes regulations on which drugs are prohibited, what the recommended testing procedures should be, and what the punishments should be for positive tests. More information on the WABDA Code can be found at http://wabda.org/. We note that the implementation will include testing of all NIH funded scientists both at the time they receive funding as well as at random times during the course of working on an NIH funded project. Testing will also be implemented at all NIH-funded or NIH-hosted events such as conferences and workshops and at grant review panels.
NIMH, NIDA, and CSR are among the 27 institutes and centers at the NIH, an agency of the Department of Health and Human Services. The NIMH mission is to reduce the burden of mental and behavioral disorders through research on mind, brain, and behavior. More information is available at the NIMH website http://www.nimh.nih.gov. The National Institute on Drug Abuse is a component of the National Institutes of Health, U.S. Department of Health and Human Services. NIDA supports most of the world’s research on the health aspects of drug abuse and addiction. The Institute carries out a large variety of programs to ensure the rapid dissemination of research information to inform policy and improve practice. Fact sheets on the health effects of drugs of abuse and further information on NIDA research can be found on the NIDA web site at http://www.drugabuse.gov. The Center for Scientific Review organizes the peer review groups that evaluate the majority of grant applications submitted to the National Institutes of Health. CSR recruits about 18,000 outside scientific experts each year for its review groups. CSR also receives all NIH and many Public Health Service grant applications — about 80,000 a year — and assigns them to the appropriate NIH Institutes and Centers and PHS agencies. CSR’s primary goal is to see that NIH applications receive fair, independent, expert, and timely reviews that are free from inappropriate influences so NIH can fund the most promising research. For more information, visit http://www.csr.nih.gov.
The National Institutes of Health (NIH) — The Nation’s Medical Research Agency — includes 27 Institutes and Centers and is a component of the U.S. Department of Health and Human Services. It is the primary federal agency for conducting and supporting basic, clinical and translational medical research, and it investigates the causes, treatments, and cures for both common and rare diseases. For more information about NIH and its programs, visit http://www.nih.gov.

That’s pretty harsh, don’t you think? And if egalitarianism is the goal, this will backfire due to inherent differences between people – an insomniac like me can certainly get more done than someone else who actually gets 8 hours of sleep every day. Back in the day I did experiments that lasted 24 hours, sometimes 36 hours, a couple of times even 72 hours straight. Not everyone’s physical and mental constitution would allow for such exertion. This would actually favor people like me. And the others? Let them eat Provigil!
Then, is the next step going to be to force morning people to work only in the morning and the evening types only in the evenings?
Will research that involves mental rotation of 3D objects be limited only to female researchers, or will the men have to be handicapped in some way, perhaps by having more than 0.08% blood alcohol so the 3D objects spin faster?
There is also a dangerous potential for going down the slippery slope. Will they start adding new chemicals to the list? In my long experiments, I was also aided by copious amounts of chocolate, Coca Cola and junk food from the vending machine (and who knows what chemicals are in those!). If NIH bans caffeine, the entire business of science in the USA will grind to a halt. No coffee, no data, sorry, sir.
Environment is known to affect our cognitive abilities as well. A factor that probably helped me the most during my long experiments was the radio tuned to a local station specializing in reruns of the Rush Limbaugh show. Our technician thought it was great that Rush was speaking the Truth to the Power, while I was inclined to scream but held back as I did not want to stress my birds and thus get unreliable data (hmmm, in retrospect, does listening to Rush affects a bird directly?). Will NIH ban radios? iPods? If it does try to completely control the environment, say Good Bye to all the field work, not to mention all the research going on up on the Space Station.
But all of this is besides the point – who ever said that science should be egalitarian!? Scientists are selected and self-selected for their intelligence, curiosity and overall geekiness. It is in the interest of scientific progress that scientists always do their best, so if they want to use brain enhancers, that’s fine, its their own choice and their own sacrifice for the greater good.
I think that NIH thinks of science like running. On an even playing field, the best runner will win. But why limit oneself to running speed. Give runners additional equipment and they go faster and soon enough you will have another exciting sport – NASCAR! I think of science as NASCAR! The spoils go to the one with the best brain enhancer! And next, we will have people racing their small personal spaceships, just like in Star Wars!
And that is just how it should be. The competition should not really be between scientists, but between Science and Nature (not talking about the journals here, as anyone knows there PLoS wins, of course). And Nature is powerful, autonomous from NIH, and as we all know, loves to play dirty. So, we should use everything we can come up with to speed ourselves up. As Nature tries to hide her secrets from us, we need to deploy all our armamentaria to snatch them from her.
And that is why we need Open Access. Just sayin’ (they pay me to do this, you know?). And I even did not have my coffee yet!
Hat-tip to Jonathan who has more.

Update:

Anna has more….
Blake puts it in proper context.
Chris has a good point.
Update 2: There is more from:
Pedro
Howard
Jenna
Martin
Bob
Hsien
Steve
Andy
Genome Technology

Yes, we need more scientists in office, and they need to know how to run

SEA will train scientists to run for office:

SEA is holding a workshop to train scientists to run for office on May 10th at Georgetown University. If you are a scientist or engineer and have been considering running for office or working on an election campaign, then join us for a crash course on how it’s done. Below is a video for the workshop featuring Congressman and former physicist Vern Ehlers.


Hat-tip.

WiSE pictures

The WiSE panel earlier today was fun and informative. On the content – later. Perhaps two other SciBlings who were in the audience will have better renditions anyway. The panel was recorded and once the recording and other blog posts are available, I will give you the links. For now, just pictures (under the fold):

Continue reading

I’ll try to say something WiSE tomorrow

WiSE, a network of Women in Science and Engineering at Duke University is hosting a panel Shaping the world, one job at a time: An altruistic/alternative career panel tomorrow, Friday, at noon in Teer 203. If you want to show up, please RSVP online as soon as possible so they know how many boxed lunches to get.
It will be an informal panel: each one of us will get 3-5 minutes to introduce ourselves, followed by a discussion and Q&A. We are also likely to hang around for a few more minutes afterwards. The panelists? Under the fold….

Continue reading

AAAS and NSF Communicating Science Workshop – April 3 – Raleigh, NC

Got an e-mail from AAAS and will try to go if at all possible:

The American Association for the Advancement of Science (AAAS), in partnership with the National Science Foundation (NSF) and North Carolina State University, will be holding a one-day workshop “Communicating Science: Tools for Scientists and Engineers” on Thursday, April 3, 2008. We aim to extend an invitation to the faculty scientists, engineers, and Ph.D. students at your institution who would like to attend this workshop, in order to learn more about communicating science to news media and the general public. Please feel free to forward this invitation to faculty scientists and engineers at your institution.
The AAAS Center for Public Engagement with Science and Technology has partnered with NSF to provide resources for scientists and engineers, both online and through in-person workshops, to help researchers communicate more broadly with the public.
Although traditional scientific training typically does not prepare scientists and engineers to be effective communicators outside of academia, NSF and other funding agencies are increasingly encouraging researchers to extend beyond peer-reviewed publishing and communicate their results directly to the greater public. Further, scientists and engineers who foster information-sharing and respect between science and the public are essential for the public communication of and engagement with science.
There is no registration fee for science and engineering faculty and Ph.D. students to attend this workshop; however, space is limited, and pre-registration is required. Please register by Wednesday, March 26, 2008. A registration form is enclosed. You can register by sending the requested information by email to tlohwate@aaas.org or by faxing or mailing the registration as indicated on the form.
The workshop will be held in the Walnut Room at the Talley Student Center at North Carolina State University in Raleigh. A map and directions can be found at http://www.ncsu.edu/student_center/driving_directions.html. We expect that both those who are interested in science communication and those who are already familiar with ways to communicate science broadly will find “Communicating Science: Tools for Scientists and Engineers” useful and informative.

Here is the program, see you there:
8:30 – 9:00 am Breakfast
9:00 – 9:30 am Welcome and Introduction
9:30 – 9:45 am Who is “General Public?”: Defining Audience
9:45 – 10:30 am Practice Research Messages and Public Talks
10:30 – 10:45 am Break
10:45 – 11:30 am Media Panel
11:30 am – 12:00 pm Enhancing Your Message: Gestures and Language
12:00 – 1:00 pm Lunch – provided
1:00 – 2:30 pm Practice Interviews
2:30 – 2:45 pm Break
2:45 – 3:30 pm Public Outreach Panel
3:30 – 4:00 pm Conclusion and Materials Review

The so-called Facebook Scandal

[rant]So, if you organize a study-group online instead of in meat-space, the old fogies who still remember dinosaurs go all berserk. A student is threatened by expulsion for organizing a Facebook group for studying chemistry. Moreover, as each student got different questions, nobody did the work for others, they only exchanged tips and strategies. See the responses:
The Star:

Yet students argue Facebook groups are simply the new study hall for the wired generation.

Yes, they are.
Greg:

How much of this is a matter of administrative fear of the internet?

100%.
Larry:

Today, that sense of “honor” seems horribly old-fashioned. To most students it will not seem like cheating if they ask their friends for help with the assignments and share information. That’s what happened on the Facebook study group.

Old-fashioned is too nice a term. It is outdated and anachronistic.
Post-Diluvian Diaspora:

Honestly, do you not see the difference between studying together and exchanging answers on a graded assignment?

The problem is in a stupid professor who thinks in terms of “graded assignments” in the 21st century.
This all stems from the old German universities of a couple of centuries ago, where getting a degree was essentially a hazing process. Toughening the individual. For what? For replicating and preserving the hierarchy, both within the academia and in society as a whole. The educational systems around the world, at all levels, are still based on such outrageous ideas.
No individual can know everything needed knowing. No individual can make the necessary societal changes on one’s own. So why teach them as if it is all up to an individual? Both learning and social change are communal processes. What we need to be teaching is how to be a member of a community, how to network, how to contribute, how to share, how to pull together in order to increase the global knowledge and, by using this knowledge, to increase the global welfare.
Science is supposed to be a collaborative activity. Why is it organized (and taught) as if it was a competitive activity? How does that affect science? Negatively, by increasing secretiveness and sometimes outright fraud.
The Web is changing all this. The teenagers already grok that the old selfish notions of intellectual property are going by the way of the dodo. They naturally think in terms of networks, not individuals. And thinking in term of newtorks as opposed to a linear, hierarchical, individualistic focus, is necessary for speeding up the advancement of knowledge and societal good.
In other words, it is not important what each individual knows or does, it is important what the interactions between individuals can do, and how the group or community (or global community) learns and acts upon the knowledge.
Thus, education, especially science education, from Kindergarden through post-doc and beyond, should be organized around collaborations, teaching people and letting them practice the networking skills and collaborative learning and action. Individuals will make mistakes and get punished by the group (sometimes as harshly as excommunication). They will learn from that experience and become more collaborative next time. The biggest sin would be selfish non-sharing of information.
If I could, I would not give individual students grades on their individual performance at all. I would give a common grade for the entire class. Each individual will then get that same grade. If the last semester’s cohort got an A, do you think that this semester’s group would settle for anything less? And how do they get an A? By pooling their resources, sharing all the information, closely collaborating on all assigned projects, and coaxing/teaching/punishing individuals who are not pulling their weight. Neither the reward nor the punishment would be meted out by some outside self-appointed ‘authority’, but by peers – the people who matter the most.
Then, they would take this approach to the Real World, where such things really matter, where sucess is that of a community, not that of any individual.
So, if you do not get this, if you are not mentally ready for the 21st century, if you still harbor the outdated competition-based, individualistic mindset, you should not be in the teaching business. Quit today. Save yourself the embarassment of being laughed at by your students. Save your students from having to deal with an authoritarian. Save the society from promulgating the counter-productive, anti-social methods of knowledge-acquisition and knowledge-use.[/rant]

Jane – the Journal/Author Name Estimator

Jane is the cool new tool that everyone is talking about – see the commentary on The Tree of Life, on Nature Network and on Of Two Minds.
In short, the Journal/Author Name Estimator is a website where you can type in some text and see which scientific Journal has the content closest to the text you input, as well as people who published on similar topics. If you click on “Show extra options” you can narrow your search by a few criteria, e.g., you can search only Open Access journals.
The idea is to discover journals to which you can submit your work. Most people know the journals available for their stuff, but this is the way to discover new journals, see which are Green or Gold OA, or find a place for a manuscript that has already been rejected by all of your usual venues 😉
Another use is for editors of broad-topic journals, to find relevant referees for the incoming manuscripts.
So, I did first the obvious test of the site – I copied and pasted the abstract of one of my papers. It gave the correct journal at 100% confidence, and all four co-authors at equal split of 25%. So, it works in that way. The other people mentioned down the list are also relevant researchers who would be appropriate for reviewing such a mansucript.
Then I copied and pasted a small chunk from my unpublished dissertation and got a list of potential reviewers that was pretty much perfect – people I’d suggest if asked.
Then, I typed in a bunch of terms that I know occur frequently in PLoS ONE in different papers, all mixed up – and PLoS ONE came up high on the list (and first among OA journals). So far so good.
Apparently, if you paste non-scientific text, you always get Harvard Business Review – they’ll take anything silly. Figures.
So, what would you use it for? Is it useful?

Books on careers in science

Anne-Marie reviews two books that appear to be useful in thinking about one’s career in science: The Beginner’s Guide to Winning a Nobel Prize, by Peter Doherty, and The Chicago Guide to Landing a Job in Academic Biology, by Chandler, Wolfe, and Promislow. Read the review and, if you think this is something you need, buy the books.
And, if you have additional recommendations, let Anne-Marie know in her comments.

How to have your papers deposited into PubMed Central

Are you confused with the new NIH Policy and unsure as to what you need to do? If so, Association of Research Libraries has assembled a very useful website that explains the process step by step. But the easiest thing to do is to publish with a journal that does the depositing for you free of charge and here is the list of such journals. Of course, PLoS automatically does that for you as well.

Open Access Beer!

What is the difference between Free Access Beer and Open Access Beer?
You go to a bar to get your Free Access Beer. You sit down. You show your ID. The barista gives you a bottle. You don’t need to pay anything for it – it’s free, after all. You take your own bottle-opener from your pocket and open the bottle. You drink the beer from the bottle. You return the empty bottle to the barista. You go home.
You order you Open Access Beer online or by phone. You pick what kind of beer you want. It gets delivered to your door really fast. The delivery man opens the bottle for you. You are not carded, nor do you have to pay. That beer is now yours to do whatever you want with it – you can drink it out of the bottle, or pour it into a glass. You can use it for cooking or you can use it to water your plants. You can do a chemical analysis of it in your lab and use the knowledge to produce an even better homebrew.
See the difference?
Unfortunately, there is no such thing as Open Access Beer, or even Free Access Beer. Which, it turns out, may be a Good Thing. For science, at least. Especially if you are Bohemian kind of guy. You need to read this very Grim report (from Emmett, via Kevin):
A possible role of social activity to explain differences in publication output among ecologists:

Publication output is the standard by which scientific productivity is evaluated. Despite a plethora of papers on the issue of publication and citation biases, no study has so far considered a possible effect of social activities on publication output. One of the most frequent social activities in the world is drinking alcohol. In Europe, most alcohol is consumed as beer and, based on well known negative effects of alcohol consumption on cognitive performance, I predicted negative correlations between beer consumption and several measures of scientific performance. Using a survey from the Czech Republic, that has the highest per capita beer consumption rate in the world, I show that increasing per capita beer consumption is associated with lower numbers of papers, total citations, and citations per paper (a surrogate measure of paper quality). In addition I found the same predicted trends in comparison of two separate geographic areas within the Czech Republic that are also known to differ in beer consumption rates. These correlations are consistent with the possibility that leisure time social activities might influence the quality and quantity of scientific work and may be potential sources of publication and citation biases.

beer%20and%20science.JPG

Generally, inhabitants of Bohemia (western region of
the Czech Republic) are known to drink more beer than
people from Moravia (eastern region of the country). This
difference was confirmed for my sample of researchers:
researchers from Bohemia drank significantly more beer
per capita per year (median 200.0 litres) than those from
Moravia (median 37.5 litres; Mann-Whitney test: U17,17
2.84, p0.005). Therefore I predicted lower measures of
publication output for the former in comparison to latter
group of researchers (I could not include nominal variable
”region” in regression models because of its significant
interdependence with another effect variable, the beer
consumption). Indeed, researchers from Bohemia published
fewer papers per year (U17,172.32, p0.02), were less
cited per year (U17,172.99, p0.003), and showed lower
citation rate per paper per year (U17,172.30, p0.02).

The question is: do you do less science because you drink too much, or do you drink too much because your science sucks? And, is 200 liters of beer per year too much? Who’s to judge? Moravians? Is there a similar correlation with wine and other drinks? Other non-alcoholic social activities?
Or is beer-drinking one of the possible symptoms of the Impostor Syndrome (see mrswhatsit’s series on it: Part I, Part II, Part III, also Zuska, Sciencewoman, Revere, Laelaps and DrugMonkey to learn more about it).

Open Students

Open Students is a new blog for students about open access to research. It is run by Gavin Baker (who also recently joined Peter Suber at Open Access News – Congratulations!) and sponsored by SPARC, the Scholarly Publishing and Academic Resources Coalition, as part of its student outreach activities.
The blog will cover the issues of Open Science as it affects the college students and will have frequent guest-bloggers (students, librarians, researchers, publishers…) – of which you can be one if you contact Gavin.

Who’s scooping whom and why this matters?

Aetosaurs. No, I have not heard of them until now. But that does not matter – the big story about them today is the possibility – not 100% demonstrated yet, to be fair – that some unethical things surround their discovery and naming. And not just Aetosaurs. Some other fossils as well.
As I am not on the inside loop of the story, you need to first read the background story on Aetosaurs by Darren Naish – Part 1 and Part 2.
Then, carefully read Darren’s today’s post and responses by Laelaps, Cryptomundo and Paleochick.
For the ethical side of the story, read Janet’s take.
For the gory details of the story, read the timeline, the entire collection of information and the brief summary of it.
Finally, this was all made public today in an article in Nature. In short, it appears that a group of people have made it a habit to scoop their colleagues by publishing other people’s information (shown by colleagues in private) and naming species faster by using their in-house Journal.
Now imagine a world in a not-so-distant future….
You just spent a long, hard, but exciting day in the Gobi desert. You finally get to eat dinner and shower and get back to your tent and turn on your computer. You post on your blog:
“Gobi. Day 23. It was a very exciting day today – we struck gold: an apparently well-preserved fossil of something that is clearly in the X family, and perhaps related to Y species, but astragalus is so weird – look at this picture of it [insert a photo of the bone]. This is most certainly a new species. It will take a year or two to dig this thing out, clean it up, analyze it and publish the full description, but for now, we name it Blogosaurus….”
And there is a time-stamp on the blog post. And a bunch of palaeo-colleagues post congratulations in the comments. And it is aggregated by a bunch of sites (ResearchBlogging.org, Connotea, etc.).
Scoop that if you can!
Everyone knows that you, indeed, are in the Gobi, as they know about your grant proposal for it and they have been following your blog daily, including all the pictures from the trip. They know they did not just see you two hours ago sipping tea in the faculty lounge at your University. They post congratulatory posts on their own blogs. They discuss the pictures and early descriptions that you posted. Over the next months and years, they keep up with the digging, cleaning and analysis by reading your blog. They come to visit and help with analysis. They teach about it in their classes. Finally, when you publish the official description of the Blogosaurus, they add comments on the paper itself.
Of course, as they all also keep blogs, they have changed the official rules of naming, allowing for official publication no matter how many times the name has been mentioned elsewhere, offline or online (as long as the description was not published in another taxonomy journal). And if they discovered that you kept another fossil find a secret, at least for a while, that would raise all sorts of red flags: was there something fishy about the fossil? Why didn’t you immediately tell the world about it if everything was legit? That kind of secretive behavior is automatically suspect, and considered unethical and anti-social.
Sunlight is the best disinfectant…

Cool new Open Access Journal

From Sage Ross, via John Lynch come exciting news about a new Open Access Journal – Spontaneous Generations: A Journal for the History and Philosophy of Science

Spontaneous Generations is a new online academic journal published by graduate students at the Institute for the History and Philosophy of Science and Technology, University of Toronto. The journal aims to establish a platform for interdisciplinary discussion and debate about issues that concern the community of scholars in HPS and related fields.
Apart from selecting peer reviewed articles, the journal encourages a direct dialogue among academics by means of short editorials and focused discussion papers which highlight central questions, new developments, and controversial matters affecting HPS.

Check out the first issue – there is some very cool stuff in there.

Life Sciences in North Carolina

OK, this may not be very new, but for all of you taking a look at science in North Carolina next week due to the focus on the Science Blogging Conference, The Scientist has published a number of essays looking at every aspect of Life Science in the state – check it out: The State of Life Sciences.
For the latest news on life science in North Carolina, visit the Bioscience Clearinghouse, a very useful website hosted by The North Carolina Association for Biomedical Research.

Grapevine Genomes

Two grape genomes were published this year, one in Nature, the other in PLoS ONE. Larry Moran explains the methodologies and results of both and discusses the trustworthiness of each. The Nature paper is explained in The Grapevine Genome, and the PLoS ONE paper is discussed in The Second Grapevine Genome Is Published. Obligatory Readings of the Day.

New on…..Publishing

In the wake of the signed omnibus bill that funds NIH and ensures open deposition of NIH-funded research, here are some thoughtful questions:
Why the NIH bill does not require copyright violation:

The great advantage of the requirement to deposit in Pubmed (rather than simply to expose on a publisher or other website) is that the act is clear. You can’t “half-deposit” in Pubmed. They have the resources to decide whether any copyright statement allows the appropriate use of the information or is suffiently restrrictive that it does not meet the NIH rules.
At some stage the community will get tired of the continual drain on innovation set by the current approach to publihing. Whether when that happens many publishers will be left is unclear.

What does USD 29 billion buy? and what’s its value?

So, while Cinderella_Open_Access may be going to the ball is Cinderella_Open_Data still sitting by the ashes hoping that she’ll get a few leftovers from the party?

What is peer review, anyway?

A final question is perhaps the most difficult: How do we identify journals offering acceptable levels of peer review? Who’s to say whether a given journal is good enough? After all, even the most rigorous scholarly journals sometimes make errors — indeed, one of the most important parts of the scientific process is identifying and correcting problems in earlier work. Indeed, too rigorous a standard of peer review can stifle research just as much as too lax a standard.

Theory and Practice

First: the difference between theory and practice.
Second: the theory.
Third: still to come, I hope, a YouTube video of Steinn demonstrating the practice of parallel parking.

The Impacted Factor in need of Cleansing

I buried this among a bunch of other cool links yesterday, but there was a study the other day, in the Journal of Cell Biology, that seriously calls in question the methodology used by Thompson Scientific to calculate the sacred Impact Factor, the magic number that makes and breaks lives and careers of scientists.
Apparently, it is really a magic number calculated in a mysterious way, not in the way that Thompson Scientific claims they do it. Who knows what subjective factors they include that they do not tell us about?

When we examined the data in the Thomson Scientific database, two things quickly became evident: first, there were numerous incorrect article-type designations. Many articles that we consider “front matter” were included in the denominator. This was true for all the journals we examined. Second, the numbers did not add up. The total number of citations for each journal was substantially fewer than the number published on the Thomson Scientific, Journal Citation Reports (JCR) website (http://portal.isiknowledge.com, subscription required). The difference in citation numbers was as high as 19% for a given journal, and the impact factor rankings of several journals were affected when the calculation was done using the purchased data (data not shown due to restrictions of the license agreement with Thomson Scientific).
Your database or mine?
When queried about the discrepancy, Thomson Scientific explained that they have two separate databases–one for their “Research Group” and one used for the published impact factors (the JCR). We had been sold the database from the “Research Group”, which has fewer citations in it because the data have been vetted for erroneous records. “The JCR staff matches citations to journal titles, whereas the Research Services Group matches citations to individual articles”, explained a Thomson Scientific representative. “Because some cited references are in error in terms of volume or page number, name of first author, and other data, these are missed by the Research Services Group.”
When we requested the database used to calculate the published impact factors (i.e., including the erroneous records), Thomson Scientific sent us a second database. But these data still did not match the published impact factor data. This database appeared to have been assembled in an ad hoc manner to create a facsimile of the published data that might appease us. It did not.
Opaque data
It became clear that Thomson Scientific could not or (for some as yet unexplained reason) would not sell us the data used to calculate their published impact factor. If an author is unable to produce original data to verify a figure in one of our papers, we revoke the acceptance of the paper. We hope this account will convince some scientists and funding organizations to revoke their acceptance of impact factors as an accurate representation of the quality–or impact–of a paper published in a given journal.
Just as scientists would not accept the findings in a scientific paper without seeing the primary data, so should they not rely on Thomson Scientific’s impact factor, which is based on hidden data. As more publication and citation data become available to the public through services like PubMed, PubMed Central, and Google Scholar®, we hope that people will begin to develop their own metrics for assessing scientific quality rather than rely on an ill-defined and manifestly unscientific number.

Of course, this was written in a polite language of science. But on a blog, I can say that this is at least very fishy and suspect. And several other bloggers seem to agree, including Bjoern Brembs, The Krafty Librarian, Eric Schnell, Peter Suber and Stevan Harnad who each dissect the paper in more detail than I do, so go and read their reactions.

New on…. Open Access and Science 2.0

Subscription-supported journals are like the qwerty keyboard:

Are there solutions? One reason for optimism is that changing how we pay the costs of disseminating research is not an all-or-nothing change like switching from qwerty to Dvorak keyboards. Some new open-access journals are very prestigious. Granting agencies are giving strong ‘in-principle’ support to open access publishing, and my last grant proposal’s budget included a hefty amount for open-access publication charges. And libraries are looking for ways to escape the burden of subscription charges.

This is an interesting idea: an Open Access journal for brief notes and updates, i.e., parts of papers.
Is the End of the Print Journal Near?: New ARL Report Examines This Issue
Related to the three posts above: The Scientific Paper: past, present and probable future
Open Access and Accessibility for the Print Disabled. Of course. Open for Everyone!
Sharing, Privacy and Trust in a Networked World “on the potential roles of social networks for libraries”.
At this lab, everyone is required to maintain a science blog, and response: Why take the risk of writing a research blog? Read the comments on both posts as well.
The Ethics of Being an Open Access Publisher
WHO embargoes health information
Listen to Peter Murray-Rast’s talk at Berlin5 on Open Access.
Listen to the recording of Jean-Claude Bradley’s talk on Open Notebook Science.
Sequence the genomes of microbes or yourself, then plug the genomes into the Interactive Tree of Life.
Nurturing your talent in academia – some good ideas to think about.
CC, Open Access, and moral rights and Intellectual Property Rights: Wrong for Developing Countries?.
Re-writing for Proseminar:

It’s time to share another round of student writing! I asked students in the Proseminar course at USU (in which all faculty take three week turns introducing students to their research interests) to put together a paper about issues related to open education. The twist (there always is one) is that they were to write as little of the paper as possible. You see, wholesale plagiarism is discouraged, but weaving together a coherent piece from ten or fifteen different extant sources is tough and an excellent chance to get some first hand experience with reuse. =) Here are links and some summaries to these re-writing exercises, in which students assembled papers from pre-existing pieces:

Behold! The New Anti-Open Access FUD
Both this article and this article completely forget that scientists at universities are also academics and also bloggers (just look around scienceblogs.com for a start)!!! Why such focus on the humanities blogs in the first place? Where did that come from?
Dancing with words:

There is a great attraction to publishers in finding ways to describe Restricted Access as open. Carried to its logical conclusion, all publications thus become Open Access. Some are Delayed-For-A-Bit Open Access, others are Quite-A-Lot-Delayed Open Access, some are Very-Delayed Open Access and the rest – where the publisher never intends to make them freely available at all – are simply Permanently-Delayed Open Access. You see, what is there to complain about?

Open Science project on domain family expansion
Bursty work. Sort of… how science works, too. Not detectable from publications, though.
Corie Lok: Bringing science out of the dark ages
John Wilbanks: No tenure for Technorati: Science and the Social Web and Seeding the Social Web for Science
Is knowledge ‘property’?

The Scientific Paper: past, present and probable future

Communication
Communication of any kind, including communication of empirical information about the world (which includes scientific information), is constrained by three factors: technology, social factors, and, as a special case of social factors – official conventions. The term “constrained” I used above has two meanings – one negative, one positive. In a negative meaning, a constraint imposes limits and makes certain directions less likely, more difficult or impossible. In its positive meaning, constraint means that some directions are easy and obvious and thus much more likely for everyone to go to. Different technological and societal constraints shape what and how is communicated at different times in history and in different places on Earth.
Technology – Most communication throughout history, including today, is oral communication, constrained by human language, cognitive capabilities and physical distance. Oral communication today, in contrast to early history, is more likely to include a larger number of people in the audience with whom the speaker is not personally acquanted. It may also include technologies for distance transmission of sound, e.g., telephone or podcasts. This is the most “natural” means of communication.
Smoke signals and tom-toms introduced new constraints to communication – the messages had to be codified, short and simple and much of verbal and non-verbal communication had to be eliminated. Invention of writing, on stone tablets, clay tablets and papyrus, and later on paper and in print, changed the constraints further, making some aspects of communication easier and others more difficult, leading to the development of universal rules and norms of written communication. Unlike oral communication, the written communication is unidirectional, from one to many, making feedback from the audience difficult or impossible. Thus, it is necessarily linear. Its permanence also requires greater care be taken about the form and content. Finally, physical constraints (i.e., the size of a book) impose a structure to written communication, e.g., breaking down the work into chapters, subheadings and paragraphs, placed in a particular order. Also, written communication introduces the concept of authorship (and readership) while oral communication is “owned” by all the participants in the conversation.
Society – What and how is communicated differs dramatically if the audience is small and familiar (e.g., one’s children or neighbors) or large and unfamiliar (speaking at a conference). Written communication is, by definition, aimed at a large and unfamiliar audience, which has an effect on form, style and content of communication. Local habits and traditions further determine the forms and styles of communication.
Conventions – Different types of communication within particular groups of people are often officially codified, often precisely defining the language, style and format. Legal and scientific literature are probably the most extreme examples of a very strict code imposed by official societies. Such strict formalization of communication was initially very useful, imposing order (positive meaning of “constraint”) to an otherwise chaotic and undependable mish-mash of communication forms, allowing all the members of the community to understand and trust each other. However, when such strict forms last for decades and centuries, they are often made out-dated by the passage of time, invention of new technologies and societal changes, thus making the negative meaning of ‘constraint’ more and more obvious.
Scientific Communication
Development of communication of science reflects the development of science itself. Communication of information about the facts about the world did not differ much from other forms of communication for most of history until science itself started distinguishing itself as a special type of human endeavor, different from philosophy and religion. The way science communication evolved parallels the changes in our thinking about the scientific method. At the time when trips to the countryside and armchair thinking were still regarded as science, much of communication was in the form of books. When the hypothetico-deductive aspect of the scientific method “won” as the scientific method, the fledgling scientific societies, led by the Royal Society in the UK and the Academy in France, designed the form and structure of the scientific paper – the form we still use today: title, author, abstract, introduction, materials and methods, results, discussion and references.
Today, we understand that the hypothetico-deductive method is just one of several elements of the scientific method (see this) and that the standard format of the scientific paper is perfectly unsuitable for publication of findings reached through other methods.
Description of new species (extant or extinct) requires a monograph format, for which specialized journals exist that cater to this particular format. Ecological surveys are often straight-jacketed into the standard format, with addition of unwarranted mathematization – not all science requires numbers and statistics. Finally, science is getting more and more collaborative – single-author papers are becoming a rarity, while the papers boasting 10, 20, 50 or even 100 authors are becoming a norm, which challenges the way authorship in science is determined (see this and links within).
But what really made the limitations of the standard format obvious is the genomic revolution. Sequencing a genome is not hypothetico-deductive science – it is akin to an ecological survey: apply a technique and see what you get! Now that the excitement of publication of the first few genomes has receded, the existing journals are inadequate platforms for publication of new genomes. While sequencing is getting easier with time, it is still expensive and time-consuming. Yet, the techniques have been standardized and there is really not much to say in the introduction, materials and methods or discussion sections of a genome paper. All that is needed is a place to deposit the raw data as tools for future research in an easily-minable format that makes such future research easy. The data would be accompanied by the minimal additional information: which species (or individual) was sequenced, which standard method was used (and if it was modified), and who did the work. It is not, any more, an intellectually creative endeavor, as useful as it is for the progress of biology and medicine.
Science On The Web
When e-mail first became popular as a communication method, some people understood it as an extension of the written communication (letters) while others took it to be a new form of oral communication (telephone). Of course, it is both and more. Two people can rapidly exchange a large number of brief personal messages (as in a phone conversation), or one can send a long e-mail message to a large group of people, written with proper grammar, capitalization, punctuation and formatting (as a pamphlet). And yet, it is also neither – unlike oral communication, there is no way to convey non-verbal communication (thus the invention of emoticons 😉 ). Unlike written communication, it is fast, informal, not usually taken very seriously or read carefully, and is easy to delete. E-mail is now a communication form of its own.
The communication on the Web is, likewise, a whole new form. Again, some people see it as written communication (putting an article or book online in order to reach more readers and nothing more), while others see it as a more personal, oral communication that is written down (and such people, unlike the first group, love podcasts and videos which add the non-verbal components of communication to the text). The former prefer static web-pages with their ‘feel’ of permanence. The latter prefer Usenet, livejournals and blogs. The latter perceive the former as stodgy, authoritarian and boring. The former perceive the latter as wild, illiterate and untrustworthy. Again, they are both right and they are both wrong – it is a whole new way of communicating, fusing and meshing the two styles in sometimes unpredictable ways – it is a mix of written and oral communication that combines permanency and authority with immediacy, honesty and the ability for rapid many-to-many communication. The younger generation will use it naturally (though this does not mean that many senior citizens today did not grasp it already as well).
So, how will the constraints (both positive and negative) imposed by the new technology and new social norms alter the formality of the scientific communication, including the format of the scientific paper?
Online, the constraints of the paper and printing press will be gone. No more need for volumes, or issues, or page numbers, or, for that matter, for the formal scientific papers.
The standard format of the scientific paper will become just one of many (and probably not the dominant or most frequent) form of scientific communication. Different people have different talents and inclinations. One is analytic, another synthetic. One is creative, another a hard worker. One has great hands with the equipment or animals, while another is good with computers and statistics. One has a lot of space and money and a network of collaborators at a prestigious institution, another is stuck in a small office somewhere in the developing world with no research funds at all. And each can make a valid and useful contribution to science. How?
One will have a great idea and publish it online. The other will turn the idea into an experimental protocol that tests the idea and will publish it somewhere online. The next will make a video of the experimental method. The next person will go to the lab and actually follow the protocol and post raw data online. The next person will take the data an analyze it and post the results somewhere else online. The next person will graph and visualize the data for easier understanding. The next person will write an essay that interprets the findings and puts them into the broader context (e.g., what does it mean?). The next one will write a summary that combines several of those findings (a review). The next will place that entire research program into the historical or philosophical context. The next will translate it into normal language that lay-people can understand.
They are all co-authors of the work. Each used his/her own strengths, knowledge and talents to contribute to the work. Yet they did not publish together, simultaneously or in the same online space, though all the pieces link to each other and thus can be accessed from a single spot. That single spot is the Scientific Journal, a place that hosts all of the pieces and links them together (also see Vernor Vinge’s vision of the science of the future, combining laboratories at universities with online boards where ideas and results are rapidly exchanged).
In the future, journals will be online hosts for all styles of scientific contribution and ways to link them together (within and betwen journals) – from hypotheses and experimental methods, to data, analyses, graphs to syntheses and philosophical discussions. The peers will review each other in real time and assign each other portions of the available funding according to the community perceptions of the individual’s needs and qualities. Universities will be places for teaching/training the next generations of scientists and for housing the labs. The PhD will be needed for becoming a professor, but not for becoming a worthy and respected contributor to science – that evaluation will be up to peers.
This may sound like science fiction, but we are already living in it. Repositories (like arXiv and Nature Precedings), science blogs, OA journals, Open Notebook Science (what Rosie Redfield and Jean-Claude Bradley do, for instance) are already here. And there is no going back.
So, how do we prepare for this future? Word: slowly but smartly. Science has some very conservative elements (in a non-political sense of the term) that will resist change. They will denigrate online contributions unless they are peer-reviewed in a traditional sense and published in a reputable journal in the traditional format of a scientific paper. Some will retire and die out. Others can be reformed. But such reforming takes patience and careful hand-holding.
The division of scientists into two camps as to understanding of the Web is obvious in the commentary on PLoS ONE articles (which is my job to monitor closely). Some scientists, usually themselves bloggers, treat the commentary space as a virtual conference – a place where real-time oral communication is written down for the sake of historical record. Their comments are short, blunt and to the point. Others write long treatises with lists of references. Even if their conclusions are negative, they are very polite about it (and very sensitive when on the receiving end of criticism). The former regard the latter as dishonest and thin-skinned. The latter see the former as rude and untrustworthy (just like in journalism). In the future, the two styles will fuse – the conversation will speed up and the comments will get shorter, but will still retain the sense of mutual respect (i.e., unlike on political blogs, nobody will be called an ‘idiot’ routinely). It is important to educate the users that the commentary space on TOPAZ-based journals is not a place for op-eds, neither it is a blog, but a record of conversations that are likely to be happening in the hallways at conferences, at lab meetings and journal clubs, preserved for posterity for the edification of students, scientists and historians of the future.
PLoS ONE is a good example of the scientific journal of the future that I have in mind – the ONE place where all the data will be deposited. The commentary space and the Hubs are where all the really interesting stuff will be happening before and after publication of data: hypotheses, methods, videos, podcasts, blogs, debates, discussions, user-user peer-review, etc. The other PLoS Journals will be places, closely connected to ONE and the Hubs, of course, where works of special value will be highlighted – high-quality, media-worthy and large/complete pieces of work, plus editorials, news, etc. – the added value. They are a necessary link between the present (past?) and the future – the showcase of the quality that we can provide and thus hopefully change the minds of the more resistant members of the scientific community.

Zotero Translator for PLoS Articles

Zotero is a Firefox plug-in that allows you to manage and cite research papers. They just announced that Zotero now works with PLoS papers. If you have no idea what I am talking about, Rich Cave explains.

Science Videos

JoVE, SciVee, LabAction and DnaTube are mentioned in this nice article, also found in a number of other newspapers, e.g., USA Today and Seattle Times.

How to Think About Science

CBC has started a series of interviews (later available as podcasts) with scientists and others about the nature of science, the public undrestanding of science and related issues. Let me know what you think and feel free to blog about individual interviews if you particularly like or dislike what someone there said.
(Hat-tip)

Don’t go near that empty beer bottle if your metabolism is fast!

That is, if you are a shrew and do not want to be just a dead data-point for some ingenious young ecologists….who at least clean up the tricky trash left by drunk drivers.

Boston – Part 2: Publishing in the New Millennium

It’s been a while since I came back from Boston, but the big dinosaur story kept me busy all last week so I never managed to find time and energy to write my own recap of the Harvard Conference.
Anna Kushnir, Corie Lok, Evie Brown, Kaitlin Thaney (Part 2 and Part 3) and
Alex Palazzo have written about it much better than I could recall from my own “hot seat”. Elizabeth Cooney of Boston Globe has a write-up as well. Read them all.
So, here is my story, in brief….and pictorial, just like the first part (under the fold).

Continue reading

On my last scientific paper, I was both a stunt-man and the make-up artist.

Cannot. Resist. Funny. Titles. Sorry.
But seriously now, the question of authorship on scientific papers is an important question. For centuries, every paper was a single-author paper. Moreover, each was thousands of pages long and leather-bound. But now, when science has become such a collaborative enterprise and single-author papers are becoming a rarity, when a 12-author paper turns no heads and 100-author papers are showing up more and more, it has become necessary to put some order in the question of authorship.
Different scientific areas have different traditions. In one discipline your contribution to the work would place you at the first author spot, in another at the last spot. Who can make heads and tails out of it all? And what about all those people who are middle-authors? Are they not worthy of getting a job?
Now that everyone is exploring alternatives to Impact Factors of journals, some are focusing on a metric for evaluating individual papers, while others are trying to figure out how to measure contributions of individual people. Both are important! A good measure of the impact of a paper is needed for the progress of science (and to historians of science). A good measure of the impact of people is needed for making sound career decisions: who gets a post-doc where, who gets a job, promotion and tenure, who gets lecture invitations and prizes.
Setting aside the possibilities of including contributions other than paper authorship (e.g., teaching, writing reviews and editorials, science popularization, books, lectures, political activity/advisory, expert witness role in courts, administrative duties, peer-reviewing, blogging, vigorous and high-quality activity online, e.g., in comments on articles published on platforms that allow interactivity, such as PLoS ONE, PLoS Neglected Tropical Diseases, PLoS Hub for Clinical Trials, etc.) and narrowing it down to just authorship on peer-reviewed research articles, it is obvious that the ambiguous system in place right now is not coming even close to what is needed for a fair evaluation of individuals engaged in the scientific endeavors.
As the authorship system affects so many people personally, in terms of their careers, it is no surprise that the discussion of this topic can get quite heated. And that is aside from the fact that some people still adhere to the silly notion that authorship has something to do with the typing of words of the final article (just see the hot exchanges in the comments on this post and this post if you don’t believe me). Authoring is creating. Or contributing to a creation of something new, regardless of the verbal description of that creation that must come at the end of the process (and can be done by hired writing professional, unless he/she is on strike right now).
Some journals require more detailed descriptions for each author’s contribution to the work. That is definitely a move in the right direction, but is not yet perfect.
Now, there is a new proposal that, at first reading, sounds ridiculous but if you stop and read it again and think about it should make you reconsider – a credit list. Yes, just like in the movies, when the credits roll at the end. Each person is listed, some people more than once, and each person’s contribution is very well defined. Everyone knows exactly what a “producer” does, what the “director” does and what the “2nd camera assistant” means. Look at the Oscars – they give awards for music composition, animation, special effects, writing, acting, directing, and all the possible roles in what it takes to make a movie.
How is science different? Someone is good at getting money, another one at having creative ideas, another at experimental design, another has a great “touch” with the animals or pipetters, while another is brilliant with statistics or making beautiful graphs. Why not reward each contribution in its own right?
Make your comments here.

I Wish I Could Be There

The fifth Science Festival is going on right now in Genoa, Italy. It is a longish affair, from 25th October till 6th November, so if you just happen to be in the area you can still make it. They have hundredr of events, e.g., exhibitions, workshops, performances and shows, all related to science in some way and targeted at a broad audience, from children to senior scientists.
I wish I could attend the session on Rhythms of Life as well as the one on Where is Science Dissemination Going?:

Nowadays, almost 2/3 of press agency releases on scientific topics are based on news given by press offices. The development of public relations activities and the search for media visibility by research institutions are only two of the most important factors that have led to a change in the panorama of scientific public communication, thus influencing its field of research as well.
In the US, the number of people working in public relations is now far greater than the number of journalists; the Internet has now revolutionised both the chronological sequence and the solidity of those “filters” that formerly marked the milestones in the dissemination of results from the researcher to the wider public.
We need to look at these profound changes and at their mutual interactions in order to understand the role played by communication in modern science.

Perhaps there will be some kind of recording of the session, or I may be able to get a summary from someone. I’d like to know how many science bloggers are there in Italy. I know one of my posts was translated into Italian and posted on one of their blogs. So was one of Mo’s posts. How organized are they? Do they meet up in Real Life sometimes? Anyone liveblogging the Science Festival?

Links and files from ConvergeSouth and ASIS&T

My brain is fried. My flight home was horrifying – the pilot warned us before we even left the gate that the weather is nasty and that he ordered the stewardess to remain seated at least the first 30 minutes of the flight. Did the warning make the experience more or less frightening? I think it made it more so. Yes, the wind played with our airplane as if it was a toy, but knowing that the pilot thought it was nasty made it less comforting that he is confident himself in his abilities to keep us afloat. The scariest was the landing – we were kicked around throughout the descent until the moment of touch-down. The pilot had to fight it by going on with more power than he would normally use, so the touch-down was followed by very sharp breaking. Yuck. I was hoping to take a nap on the flight – yeah, right!
Anyway, while I am recovering (and trying to catch up with work), here are some files and links from the two conferences I presented at over the last week:
Let me just put everything in one place:
ConvergeSouth
The audio is here (missing the interesting Q&A unfortunately (you may have to crank up the volume on your computer to the max to hear it).
I used these links as a basis for the talk, though focusing primarily on PLoS, SciVee.com and Open Access.
CIT blog summary: Scientific publications, now with interactivity
And here is my summary.
ASIS&T:
You can watch a streaming Flash of the session (sans the last part of the Q&A) here.
My PPT can be downloaded here. Note in the recording how quickly I went through the slideshow about blogs and left the PLoS ONE slide up forever talking about the way OA publications will get integrated into other ways of doing, teaching and communicating science (including blogs) online – I certainly earned my pay for PLoS on Tuesday 😉
The Rashomon of blog summaries:
me
me
Janet
Jean-Claude
Christina Pikas
Ken Varnum
Stephanie Willen Brown

Felice Frankel wins The Lennart Nilsson Award for science photography

Nobel Prizes are not the only awards given in Stockholm these day. Karolinska Institute also gives an annual Lennart Nilsson Award for photography. This year’s prize has just been announced and I am happy to report that the recepient is a friend of mine (and Scifoo camper), Felice Frankel for her amazing science photography. From the Press Release:

Felice Frankel, a scientific imagist and researcher at Harvard University’s Initiative in Innovative Computing, has been named the recipient of the 2007 Lennart Nilsson Award. Frankel was sited for creating images that are exquisite works of art and crystal-clear scientific illustrations – both fascinating and valuable to the general public and scientific community alike.
The Lennart Nilsson Award is given out annually in honour of the internationally celebrated Karolinska Institutet photographer. As with the Swedish photographer’s own images, Felice Frankel’s work reveals previously invisible aspects of the world in unique, novel ways. Her subjects range from nanotechnology to magnetism and the surface tension of water droplets.
“In studying Ms. Frankel’s work, I recognize my own way of looking at the world. We share the same passion for using images to explain and communicate science,” says Lennart Nilsson.
In selecting Felice Frankel, the board of the Lennart Nilsson Foundation stated: “Those viewing Ms. Frankel’s images are initially captivated by their form and colour. No sooner is their curiosity aroused than they want to know what the photograph depicts. She has thus fulfilled a scientific reporter’s paramount task: to awaken people’s interest and desire to learn.”
Felice Frankel began her academic career in biology, but then moved on to architectural and landscape photography. During a fellowship year at Harvard’s Graduate School of Design, she turned once again to science, beginning work in her present specialty. Today, she is a Senior Research Fellow at the Initiative in Innovative Computing at Harvard University and also holds an appointment as a research scientist at the Massachusetts Institute of Technology (MIT).
Throughout her professional life, Felice Frankel has worked to make visual imagery a key tool in scientific communication. Her photographs, like Nilsson’s, have often been reproduced on the covers of leading science magazines like Nature and Science. She writes a regular column in American Scientist, and has published a series of books. Her latest — Envisioning Science: The Design and Craft of the Science Image (MIT Press, 2002) — is a guide to creating visual scientific images that convey research to a wider audience. Felice Frankel lectures regularly about scientific photography and new methods of using images to improve the teaching of science.
The Lennart Nilsson Award was established in 1998 and is administered by Karolinska Institutet in Stockholm, Sweden. The Award of 100,000 SEK (approximately 15,600 USD) will be presented in Berwaldhallen concert hall in Stockholm on the first of November 2007. The occasion will also host the annual installation of professors at Karolinska Institutet, Sweden’s largest centre for medical research and training and the home of the Nobel Assembly. Lennart Nilsson will be present at the ceremony.

A Global Slant On Nobel Prizes

So far this week, my blogging had a distinctly local slant on Nobel Prizes, so now I want to do something different. Quite a lot of people have noticed how many science prizes this year went to Europeans. Read the excellent treatments by Katherine Sharpe, Abel Pharmboy, Steinn Sigurosson, Chad Orzel and PZ Myers to see the range of ideas and opinions on this.
I want to add just a couple of brief points…
If you look at the list of winners of Nobels for Literature, you will notice that they come from all over the world.
If you look at the Peace Prizes, they are also from all over, though U.S. recepients are quite frequent probably due to the fact that the US, as a country with a huge military which it is quite willing to use, is in the position to affect where and when the wars start and where and when they end. Often those decisions are disastrous, but sometimes they are a force for good and the US leaders behind those decisions deserve the prize.
The science prizes are mainly going to Americans and Europeans. This, in my mind, is not due to inherent superiority of scientists in these places, but due to difficulties facing scientists elsewhere. Especially for disciplines awarded by the Nobel committee – physics, chemistry, biomedical research – there is a necessity for quite a lot of space, money, infrastructure, equipment, state support, national science tradition, institutional memory, network of qualified collaborators and access to literature, none of which is readily available to scientists in developing countries. If the prizes were awarded for mathematics, non-medical areas of biology or archeology, for instance, I bet there would be many more recipients from other places, as at least some areas of such research can be done by individuals with minimal need for support, infrastructure and funds.
Let’s start with literature. If your library cannot afford subscriptions to any journals, as just subscription to Science and Nature exceeds entire annual operating budget, your research will be based on 40-year old hand-me-down textbooks, not on last week’s cutting-edge papers, thus your research is outdated and perhaps flawed even before you start doing it! Forget Nobel – you are doomed to mediocrity no matter how brilliant you may be. You know my solution to this problem: Open Access.
There are about 180 countries in the world (depends who is counting).
There are three science prizes every year, with potentially a total of nine recepients.
In an ideal world, each country would expect, on average (180/9 = 20) to have a science Nobel laureate once every 20 years. This would not mean that US science has gone down the drain, but that science has really became global as it should be. I can’t wait for this to happen.

How To Cite a Blog Post Properly in your List of References

A couple of years ago, a blog post of mine appeared in the List of References of a paper. Unfortunately, the form in which it was cited was this:
#16 Zivkovic B. Clock tutorial #6: To entrain or not to entrain, that is the question. (2005); Available at: http://circadiana.blogspot.com.
As you can see, it is far from specific. The actual URL of the post is http://circadiana.blogspot.com/2005/02/clock-tutorial-6-to-entrain-or-not-to.html. When I reposted it here I added on the bottom what I thought would be the Proper Reference to this post:
Zivkovic, BD (2005/2006) Clock Tutorial #6: To Entrain Or Not To Entrain, That Is The Question. A Blog Around The Clock, http://scienceblogs.com/clock/2006/08/clock_tutorial_6_to_entrain_or.php
I even contacted the authors about this, but nothing was done to fix it.
As that post was for a long time the only example of a cited blog-post, it was kinda OK (except for me alone). But now that the practice is spreading, some uniformity is neccessary and authors/editors need to be informed about it. Now, The NLM Style Guide for Authors, Editors, and Publishers has added the official rules for citing blog posts (via Medgadget):
Sample Citation and Introduction to Citing Blogs
Citation Rules with Examples for Blogs
Examples of Citations to Blogs
Bookmark those and remember to use them!
Update: Now that I took a second look and removed my perceptual blind-spots, prompted by a commenter, I see that they are actully not including correct permalinks in their references. I will contact them and you should, too.

A Local Slant On Nobel Prizes, Again.

Smithies is not the only winner of this year’s Nobel Prize with a local connection.
The Nobel Prize for Peace was awarded this morning and one of the recepients is the Intergovernmental Panel on Climate Change (IPCC). The chair of IPCC is Dr. Rajendra Kumar Pachauri, a triple alumnus and former professor at my alma mater North Carolina State University:

Pachauri, chair of the Intergovernmental Panel on Climate Change (IPCC), obtained all three of his graduate degrees from NC State, including a master’s degree in industrial engineering in 1972, and doctorates in industrial engineering and economics. He also served at NC State as an assistant professor (August 1974 – May 1975) and visiting faculty member (summer 1976 and 1977) in the Department of Economics.

Oh, and unless you just woke up from The Long Sleep, you probably heard that the other recepient sharing the prize is some fella by the name of Al Gore. Ever heard of him? Apparently, he is the only person in history to get both a Nobel and an Oscar (is that true?). Next for him: an Olympic Gold medal and then he’ll have everything. Except Pulitzer, Emmy and winning the American Idol…oh, and the U.S.Presidency – darn, that’s the one he should have won some seven years ago.

How much does pharmaceutical industry control what appears in medical literature?

Ghosts, drugs, and blogs:

By its hidden nature, it is obviously a challenge to determine the exact prevalence of “ghost management,” defined by Sismondo as the phenomenon in which “pharmaceutical companies and their agents control or shape multiple steps in the research, analysis, writing, and publication of articles.”

Of course they fight against Open Access Publishing – too much sunshine scares them and would make them scurry away in panic…

Laboratory Web Site and Video Awards

You may remember, from several months ago, that Attila started a contest for the best designed lab web page.
Soon, the project became too big for a lone blogger to tackle. Especially after an article about this appeared on the online pages of Nature. So, as Attila announced today, the contest goes Big Time.
The Scientist is now hosting the official contest. Of course, Attila is one of the judges. Several web-pages have already been nominated and now it is your job to think of the best-designed, prettiest, most-functional and most up-to-date laboratory homepages and nominate them for the prize.
Also, spread the word about this.

Journal Clubs – think of the future!

The recent return of Journal Clubs on PLoS ONE has been quite a success so far. People are watching from outside and they like what they see.
The first Journal Club article, on microbial metagenomics, has already, in just one week, gathered 3 ratings, each accompanied with a short comment, one trackback (this will be the second) and 7 annotations and 4 discussions eliciting further 14 responses in the comment threads. The 12-comment-and-growing thread on the usefulness of the term ‘Prokaryote’ is quite exciting, showing that it is not so hard to comment on PLoS ONE after all, once you get over the initial reluctance. You should join in the conversation there right now!
If you encounter a technical problem, please contact the Webmaster so the glitch can be fixed promptly. For a brand-new software built in-house, TOPAZ is performing remarkably well, but glitches do sometimes happen. It is essential to report those to the Webmaster so the IT/Web team can fix them quickly and make the site better and better for all users as time goes on. Just like anything else in development, it needs feedback in order to improve over time. For the time being, I guess, compose in Notepad, WordPad or something similar before copying and pasting there. And thank you for your participation.
One thing to keep in mind is that a PLoS ONE article is not a blog post – the discussion is not over once the post goes off the front page. There is no such thing as going off the front page! The article is always there and the discussion can go on and on for years, reflecting the changes in understanding of the topic over longer periods of time.
Imagine if half a century ago there was Internet and there were Open Access journals with commenting capability like PLoS ONE. Now imagine if Watson and Crick published their paper on the DNA structure in such a journal. Now imagine logging in today and reading five decades of comments, ratings and annotations accumulated on the paper!!!! What a treasure-trove of information! You hire a new graduate student in molecular biology – or in history of science! – and the first assignment is to read all the commentary to that paper. There it is: all laid out – the complete history of molecular biology all in one spot, all the big names voicing their opinions, changing opinions over time, new papers getting published trackbacking back to the Watson-Crick paper and adding new information, debates flaring up and getting resolved, gossip now lost forever to history due to it being spoken at meetings, behind closed door or in hallways preserved forever for future students, historians and sociologists of science. What a fantastic resource to have!
Now imagine that every paper in history was like that (the first Darwin and Wallace letters to the Royal Society?!). Now realize that this is what you are doing by annotating PLoS ONE papers. It is not the matter so much of here-and-now as it is a contribution to a long-term assessment of the article, providing information to the future readers that you so wished someone left for you when you were reading other people’s papers in grad school and beyond. Which paper is good and which erroneous (and thus not to be, embarrassingly, cited approvingly) will not be a secret lab lore any more transmitted from advisor to student in the privacy of the office or lab, but out there for everyone to know. Every time you check out a paper that is new to you, you also get all the information on what others think about it. Isn’t that helpful, especially for students?
So, go forth and comment on papers in areas you are interested in. And if you are a member of a lab group, a graduate seminar, an honors class, or an AP Biology class, let me know if you would be interested in doing a Journal Club on one of the PLoS ONE papers in the future – a great exercise for you, nice exposure to your group, and a service to the scientific community of today and tomorrow.

UNC researcher wins a Nobel for the Knock-Out Mouse

Dr. Oliver Smithies, the Excellence Professor of Pathology and Laboratory Medicine, University of North Carolina at Chapel Hill, NC, USA, together with Mario R. Capecchi and Martin J. Evans, won this year’s Nobel Prize in Physiology and Medicine:

This year’s Nobel Laureates have made a series of ground-breaking discoveries concerning embryonic stem cells and DNA recombination in mammals. Their discoveries led to the creation of an immensely powerful technology referred to as gene targeting in mice. It is now being applied to virtually all areas of biomedicine – from basic research to the development of new therapies.
Gene targeting is often used to inactivate single genes. Such gene “knockout” experiments have elucidated the roles of numerous genes in embryonic development, adult physiology, aging and disease. To date, more than ten thousand mouse genes (approximately half of the genes in the mammalian genome) have been knocked out. Ongoing international efforts will make “knockout mice” for all genes available within the near future.

Update: Here is the UNC press release.
[Hat-tip to Abel]

World Health Organization breaks embargo and messes up.

Before two papers passed the peer-review and got published, WHO (which was given the data) made its own interpretation of the findings and included it in its press kit, including the errors they made in that interpretation. A complex story – what’s your take on it?

Science 2.0 at SILS

Yes, I’ll be there this Friday. Come by and say Hello if you are in the building or close at lunchtime.

Help make NIH-funded research findings freely available to everyone!

Back in July, the House of Representatives passed a bill that requires all the NIH-funded research to be made freely available to the public within at most 12 months subsequent to publication.
The equivalent bill has passed the Senate Appropriations Committee earlier this summer and will be up for vote in the Senate very soon! In advance of this important vote, The Alliance for Taxpayer Access has issued a Call for action:

As the Senate considers Appropriations measures for the 2008 fiscal year this fall, please take a moment to remind your Senators of your strong support for public access to publicly funded research and – specifically – ensuring the success of the National Institutes of Health (NIH) Public Access Policy by making deposit mandatory for researchers.
Earlier this summer, the House of Representatives passed legislation with language that directs the NIH to make this change (http://www.taxpayeraccess.org/media/release07-0720.html). The Senate Appropriations Committee approved a similar measure (http://www.taxpayeraccess.org/media/release07-0628.html). Now, as the Appropriations process moves forward, it is critically important that our Senators are reminded of the breadth and depth of support for enhanced public access to the results of NIH-funded research. Please take a moment to weigh in with your Senator now.

Read the rest for talking points and the contact information of your Senators, then do your part and contact them! And spread the word – by e-mail, posting on your blog or website, on forums and mailing lists. Let’s get this bill passed this month and thus ensure that taxpayer-funded research is freely available to its funders – the taxpayers.
This needs to be done no later than Friday, September 28, 2007, when the bill is slated to appear in the Senate.

Computational Biology around the world

Johanna Dehlinger writes:

In September, PLoS Computational Biology begins a series entitled “Developing Computational Biology” about the pursuit of scientific endeavors in computational biology around the world. Each country has unique features in areas from educational programs, types of research being undertaken and the ways that research is funded. The series starts with a perspective on computational biology in Mexico, followed by contributions about Brazil, Cuba, Argentina, China, and South Africa.

This will be interesting to watch – tune in.

Ethics Code for Scientists?

BBC reports that scientists working in the UK government have adopted a Scientific Ethics Code, written by Professor Sir David King. Here is the Code:

Act with skill and care, keep skills up to date
Prevent corrupt practice and declare conflicts of interest
Respect and acknowledge the work of other scientists
Ensure that research is justified and lawful
Minimise impacts on people, animals and the environment
Discuss issues science raises for society
Do not mislead; present evidence honestly

Several bloggers have responded to this. Here is Janet’s take:

They seem like quite sensible principles — so sensible, in fact, that you might ask why they need to be formalized in a code of ethics. Don’t scientists already know that they should be honest, be fair to their fellow scientists, avoid conflicts of interest, keep up with the literature in their field, and all that good stuff?
Surely they do, but we’ve noted before that knowing what you ought to do and actually doing it are two different things. The question then becomes, how exactly does having a code of ethics help?

Oldcola has several suggestions to edit or add to the Code – I like them all but of course I especially like this one:

In general, I would like to make it mandatory to spend a week per year discussing issues science raises for society for every single scientist. And maybe mandatory to read and rate papers on PLoS ONE. Now, come on, I’m not joking. And yes, I do started doing so myself, with a minimal objective of 3/week.
And maybe the scientists should be trained to blog, also.

Perhaps they will discuss the Code at the ESF-ORI First World Conference on
RESEARCH INTEGRITY: FOSTERING RESPONSIBLE RESEARCH

What do you think?

Word of the Day

Copyfraud

Qualitative vs. Quantitative Research (in Medicine and elsewhere)

In a commentary and a blog post, the editors of PLoS Medicine ask:

….is there still a reluctance to accept that anything useful can be learned from research without numbers?

An old question that tends to generate a lot of heat. Where do you stand on it, within medicine or within your own area of research?

MS Excel is the tool of the Devil!

There is a good reason why scientists in general despise MS Excel. It is cumbersome, non-common-sensical, and the stats cannot be trusted. The graphs are ugly. I am sure it took a lot of hard work to design Excel (and Word), but if I were Charles Simonyi, I would hide the authorship of those two programs as much as possible. Charles went to the Space Station, after all, paying for the ticket out of his own pocket, so there is something much more exciting (and safe) to brag about (not to mention dating Martha Stewart).
There are so many good pieces of software out there, many capable of doing some very complex statistics. For quick simple tests, nothing beats the free online GraphPad QuickCalcs. A few seconds of pasting in the data, click on “Calculate” and the numbers are all there, ready to copy and paste into the manuscript.
I still use CricketGraph (the ancient version 3.0, not anything newer) for drawing graphs as nothing beats its simplicity and the crisp clarity of the graphs. For the stuff in my field, the open source program Circadia, small enough to fit on the old big soft floppies, not updated since 1982, is still a golden standard that no newer software package can begin to match in its ease of use, clarity and ability to do everything a chronobiologist wants to do with data in a matter of few minutes. I wish I did not have to keep an old Mac around just for those two programs (new MacOS cannot read them).
But, darned Excel is the corporate standard. So, I spent the last few days cussing and cursing, being mean to the dog, and generally having a bad time, because I had to use Excel. And I started out all wrong – it was a common-sensical way to do it, but, hey, common sense does not operate here. I consulted people better versed with it to see if I was doing it right. When they said No, I had to start from scratch. And I am still doing it (a day overdue now). And it appears I’ll be doing it all day or longer…. Yuck!

What is an “Author”?

There are some die-hards in the comment thread of this post on Evolgen who assert that the only thing that makes one an author of something is the act of writing, i.e., using writing materials to commit language to paper. Preferably English language… Thus, in their minds, there is something fishy about multi-author scientific papers, i.e., only the individual who crafted the sentences of the paper should be considered an author of that paper.
But…
Leonardo painted Mona Lisa. Leonardo is the “Author” of Mona Lisa. People who named it, framed it, marketed it, hung it up in The Louvre and described it in the Catalogue – all of them are equivalent to editors and publishers. They are not authors. Leonardo is. Although, note that he never commited language to paper. For all practical purposes he could have been illiterate, he would still be the Author.
Mozart composed The Little Night Music. Mozart is the “Author” of The Little Night Music. He wrote it down in musical notation, but for all practical purposes he could have just played it and had some court musician (Salieri?) jot down the notes on paper. In any case, Mozart is the Author. Although, note that he never committed language (German, English or any other) to paper. For all practical purposes he could have been illiterate, he would still be the Author.
Many modern music bands are composed of musically illiterate people. They get together and start playing their instruments. After a while and many fits and starts, they come up with something that actually sounds good. They then practice it and in the end they record it. The music is never written down, but it is distributed in the form of a digital file, perhaps as a CD. They are collectively Authors of the piece. Others – producers, recording engineers, marketers, etc. are not Authors. The band members are. No language was committed to paper in the entire process, not even musical notation. For all practical purposes they could all have been illiterate, they would still be the Authors.
When a bunch of scientists get together and talk, they may come up with an idea, which they then refine and develop. They contact other scientists who possess particular skills or expertise needed for the project. The work gets done, with each person doing his/her own part. They all participate in data production, data analysis and/or interpretation. Finally, almost as an afterthought, one unlucky member of the group is assigned the tedious job of writing the paper, i.e., the textual part of the paper. This one person commits language to paper, though the statistics and graphs are a much more important parts of the paper (and much more difficult to produce than text). All the people involved in the process are Authors of that piece of work. If the group hired someone else, e.g., a professional writer (and yes, some labs do that), to write the textual part of the paper, the ONLY person who is NOT an Author of that paper is the ONLY person who actually committed language to paper.
So, where does the confusion arise from? Authorship has NOTHING to do with language. It has everything to do with the creative process. People who produce something new, be it art, music, ideas (including stories) or knowledge are the authors of it. The writing is just one of the many possible ways that the authored thing is recorded for others to enjoy. A novelist is an author not because she typed, but because she creatively invented the story she subsequently typed.
Imagine if 20 or 50 years from now there is no scientific paper in the current form at all. All of science is reported in the video format on places like SciVee or JoVE. The authors of the work turn on the camera and talk about their initial idea and background, then show around the lab, demonstrate their techniques, put up a short clip of something relevant to the work (e.g., animal behavior), display the data and the analysis, then again turn to the camera and talk about their conclusions and the directions for the future research. The YouTube generation, now in their 50s and 60s and with long white beards, watches this and, if intrigued, clicks on another button that shows all the raw data sitting there ready to be mined. No writing is involved at all. No putting language on paper. Yet, all the people who participated in the creation of this piece of knowledge are Authors. For all practical purposes they could all be illiterate, they would still be the Authors.

Nature mission (sic) statement

Maxine Clarke:

In printing the statement verbatim every week as we have done, making it clear when it originated, we have hitherto assumed that readers will excuse the wording in the interests of historical integrity. But feedback from readers of both sexes indicates that the phrase, even when cited as a product of its time, causes displeasure. Such signals have been occasional but persistent, and a response is required.

Suzanne Franks:

Who needs outright discrimination? It’s so much more pleasant and civilized to discriminate while pretending to be inclusive. It’s just one tiny step sideways, but in the right direction to deflect real and meaningful change. It’s just our small way of saying “patriarchy RULES!”

Chris Surridge:

I had always thought it was a disclaimer when quoting text letting me indicate that I know there is an error in the text but that I am quoting verbatim. Basically [sic] says “I didn’t make a mistake, the error is in the original”. Now it seems we can use it to indicate that we disagree with the original wording and are sure that the author would too if they were around to ask.

Bill Hooker:

So now at least I know what it is that I disagree with. I don’t think NPG should link to the 1869 statement, at least not without going through the modern version, as Nature (the journal site) does. I think the print journal should print the modern mission statement — with, if they want a nod to their impressive history, a comment to the effect that apart from updating sexist and exclusive language, not much has changed from the original (which is visible on our website, etc etc).

Suzanne Franks 2:

Well, I’m sorry, but much of my original critique remains unchanged. I don’t care if you have a nice new online mission statement. If you want to keep printing your old sexist one every week then contextualize it as a historical document and explain that it is sexist and outdated and was outdated at the time it was published and is included here only as another example of how women were explicitly excluded in the past. And contextualize it that way every time you print it, every week, not once in an editorial. That tiny little [sic] does not do the job. What it does is say “we know this is wrong but we don’t care, we are going to keep printing it anyway”. Continuing to print it uncontextualized each week says “we revere this bit of our history so much that we want you to read it every week. And we don’t really care all that much that it is sexist, ’cause we think it rocks so much!”
As I said in a comment, imagine the historical mission statement said “for scientific white men”. Would you still feel comfortable printing it every week? Would you feel that just inserting a little [sic] after it was a sufficient gesture to allow you to keep printing it unmodified? I’m guessing it’s less likely the answer would be yes.

Thoughts?

Alone in the lab…and you get hungry!

So, you look around to see if there is anything edible!
Of course, it’s easy if you work with tasty animals….(just ask the guys in the next door lab who work on lobsters, crayfish and oysters…or wait until you get some brains out of quails and notice the plump breastmeat….just joking).

Who is Eva Vertes?

I have linked to and posted pictures of Eva Vertes from SciFoo before and you may ask: “Who is she? Why was she invited there?” The Wikipedia page I linked to earlier is a short stub and full of errors. So, to make it clear, see this page as well as comments on this talk she gave two years ago when she was 17:

The 7 Most Exciting Moments in Science

Ruchira comments on the article in the Discover Magazine and their choice of seven most magical eureka moments in the history of science.
They are:
* Otto Lowei: discovering the chemical transmission of nerve impulses
* Rene Descartes: developing the Cartesian co-ordinate system of perpendicular lines and planes
* Nikola Tesla: designing the alternate current motor
* Edwin Hubble: discovering the existence of galaxies outside the Milky Way
* Robert Hooke: discovery of the cell as the building block of all living organisms
* Henry Becquerel: discovery of radioactivity
* Alexander Fleming: discovery of penicillin
Agree or disagree?
Didn’t Darwin have an ‘a-ha!’ moment when reading Malthus? How about Kekule’s dream?